![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 13 months ago
Last modified 13 months ago
#16419 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.1.1-arm64-arm-64bit
ChimeraX Version: 1.9rc202411082121 (2024-11-08 21:21:14 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000203c03840 (most recent call first):
File "/Applications/ChimeraX-1.9-rc2024.11.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/dialog.py", line 50 in display
File "/Applications/ChimeraX-1.9-rc2024.11.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/dialog.py", line 138 in show_save_file_dialog
File "/Applications/ChimeraX-1.9-rc2024.11.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/toolbar/providers.py", line 38 in _file_save
File "/Applications/ChimeraX-1.9-rc2024.11.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/toolbar/providers.py", line 56 in run_provider
File "/Applications/ChimeraX-1.9-rc2024.11.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/toolbar/__init__.py", line 37 in run_provider
File "/Applications/ChimeraX-1.9-rc2024.11.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/toolshed/__init__.py", line 1419 in run_provider
File "/Applications/ChimeraX-1.9-rc2024.11.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/toolshed/info.py", line 397 in run_provider
File "/Applications/ChimeraX-1.9-rc2024.11.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/toolbar/tool.py", line 170 in callback
File "/Applications/ChimeraX-1.9-rc2024.11.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9-rc2024.11.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9-rc2024.11.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, lxml._elementpath, lxml.etree, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, psutil._psutil_osx, psutil._psutil_posix, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, chimerax.segment._segment, PIL._imagingmath (total: 61)
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"codeSigningMonitor" : 1,
"incident" : "864F86A4-CCE9-496F-9C01-ABE4A0DD4DA8",
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"procLaunch" : "2024-12-04 15:50:53.6040 -0600",
"procStartAbsTime" : 55263465718,
"procExitAbsTime" : 234410925150,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9-rc2024.11.08.app\/Contents\/MacOS\/ChimeraX",
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"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
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}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9rc202411082121 (2024-11-08)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/ndeese/Desktop/NdeeseFitted.cxs format session
Opened map.mrc as #1, grid size 400,400,400, pixel 1.12, shown at level
0.0263, step 2, values float32
Opened 8uej-assembly1.cif map 4 as #3, grid size 236,251,238, pixel 1.33,
shown at level 0.0961, step 1, values float32
Opened volume difference as #4, grid size 400,400,400, pixel 1.12, shown at
level 0.0183, step 1, values float32
Opened ThirdSegFit.mrc as #6, grid size 48,89,84, pixel 1.12,1.12,1.12, shown
at level 0.0227, step 1, values float32
Opened FOURSEGFIT.mrc as #7, grid size 83,92,72, pixel 1.12,1.12,1.12, shown
at level 0.0263, step 1, values float32
Opened First SegFit.mrc as #8, grid size 62,41,105, pixel 1.12,1.12,1.12,
shown at level 0.0285, step 1, values float32
Opened FIVESEGFIT.mrc as #9, grid size 69,66,58, pixel 1.12,1.12,1.12, shown
at level 0.0261, step 1, values float32
Opened SecSegFit.mrc as #10, grid size 48,89,84, pixel 1.12,1.12,1.12, shown
at level 0.0227, step 1, values float32
Opened ONESEGFIT.mrc as #11, grid size 121,109,34, pixel 1.12,1.12,1.12, shown
at level 0.0245, step 1, values float32
opened ChimeraX session
Showing volume difference.seg - 193 regions, 193 surfaces
> hide #2 models
> hide #!4 models
> hide #!5 models
> show #!5 models
> show #!4 models
> open /Users/ndeese/Downloads/fold_1144_1225/fold_1144_1225_model_0.cif
Chain information for fold_1144_1225_model_0.cif #12
---
Chain | Description
A | .
Computing secondary structure
> open /Users/ndeese/Downloads/fold_481_526/fold_481_526_model_0.cif
Chain information for fold_481_526_model_0.cif #13
---
Chain | Description
A | .
Computing secondary structure
> open /Users/ndeese/Downloads/fold_1145_1226/fold_1145_1226_model_0.cif
Chain information for fold_1145_1226_model_0.cif #14
---
Chain | Description
A | .
Computing secondary structure
> open /Users/ndeese/Downloads/fold_3433_3497/fold_3433_3497_model_0.cif
Chain information for fold_3433_3497_model_0.cif #15
---
Chain | Description
A | .
Computing secondary structure
> open /Users/ndeese/Downloads/fold_2697_2754/fold_2697_2754_model_0.cif
Chain information for fold_2697_2754_model_0.cif #16
---
Chain | Description
A | .
Computing secondary structure
> volume #!4,6-11 style surface
> volume #6 level 0.01877
> volume #7 level 0.01891
> volume #8 level 0.01901
> volume #9 level 0.01911
> volume #10 level 0.01883
> volume #11 level 0.01902
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!4 models
> hide #!6 models
> hide #13 models
> hide #14 models
> hide #15 models
> hide #16 models
> transparency #5 50
> select add #12
1730 atoms, 1928 bonds, 82 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #12,1,0,0,53.147,0,1,0,112.5,0,0,1,-72.028
> view matrix models #12,1,0,0,197.57,0,1,0,114.42,0,0,1,-85.865
> view matrix models #12,1,0,0,268.57,0,1,0,87.361,0,0,1,-58.968
> view matrix models #12,1,0,0,347.18,0,1,0,69.665,0,0,1,95.499
> view matrix models #12,1,0,0,285.2,0,1,0,174.2,0,0,1,234.85
> view matrix models #12,1,0,0,249.39,0,1,0,268.78,0,0,1,294.13
> view matrix models #12,1,0,0,265.5,0,1,0,263.46,0,0,1,285.13
> ui mousemode right "rotate selected models"
> view matrix models
> #12,0.97968,-0.10624,-0.17011,266.51,0.10083,0.99409,-0.040146,263.44,0.17337,0.022179,0.98461,284.79
> view matrix models
> #12,0.24588,-0.58271,-0.77459,271.74,-0.55638,0.56952,-0.60506,268.23,0.79372,0.57974,-0.18417,286.36
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 1 atomic models, 0 maps.
> hide #!5 models
> show #!4 models
> show #!5 models
> fitmap #12 inMap #4
Fit molecule fold_1144_1225_model_0.cif (#12) to map volume difference (#4)
using 1730 atoms
average map value = 0.0155, steps = 368
shifted from previous position = 11.1
rotated from previous position = 37.3 degrees
atoms outside contour = 1130, contour level = 0.0183
Position of fold_1144_1225_model_0.cif (#12) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
0.09519642 -0.84874857 -0.52015719 266.00586031
-0.02864063 0.51997868 -0.85369894 262.18108421
0.99504641 0.09616671 0.02519141 293.47896478
Axis 0.48280245 -0.77015523 0.41684855
Axis point 67.34271107 0.00000000 348.91707370
Rotation angle (degrees) 100.35908586
Shift along axis 48.84442698
> ui mousemode right "translate selected models"
> view matrix models
> #12,0.095196,-0.84875,-0.52016,243.86,-0.028641,0.51998,-0.8537,253.1,0.99505,0.096167,0.025191,299.67
> ui mousemode right "rotate selected models"
> view matrix models
> #12,-0.32152,0.33913,-0.88409,242.25,0.22191,-0.88068,-0.41852,255.43,-0.92053,-0.33075,0.20789,303.99
> fitmap #12 inMap #4
Fit molecule fold_1144_1225_model_0.cif (#12) to map volume difference (#4)
using 1730 atoms
average map value = 0.01744, steps = 624
shifted from previous position = 18.5
rotated from previous position = 26.9 degrees
atoms outside contour = 914, contour level = 0.0183
Position of fold_1144_1225_model_0.cif (#12) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
-0.19148308 0.46957071 -0.86188026 232.53128081
-0.22298607 -0.87597943 -0.42771164 270.06040684
-0.95583024 0.11028775 0.27244296 309.82496898
Axis 0.60998415 0.10652056 -0.78522144
Axis point 277.71778723 115.07293879 0.00000000
Rotation angle (degrees) 153.83264443
Shift along axis -72.67382524
> show #!11 models
> show #!10 models
> show #!9 models
> show #!8 models
> show #!7 models
> show #!6 models
> hide #!5 models
> hide #!4 models
> show #!4 models
> show #!5 models
> hide #!6 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #12 models
> show #12 models
> select subtract #12
Nothing selected
> hide #!4 models
> show #13 models
> select add #13
977 atoms, 1090 bonds, 46 residues, 1 model selected
> view matrix models
> #13,0.86985,0.12923,-0.47609,-0.6875,-0.4805,0.44052,-0.75833,-1.3351,0.11173,0.88839,0.44528,-0.57849
> view matrix models
> #13,0.54557,0.41891,-0.72585,-1.1964,-0.79281,0.53873,-0.28499,-0.77304,0.27165,0.73095,0.62603,-0.23263
> view matrix models
> #13,0.5454,0.41881,-0.72605,-1.1967,-0.79311,0.53808,-0.2854,-0.77359,0.27114,0.73149,0.62563,-0.23362
> ui mousemode right "translate selected models"
> view matrix models
> #13,0.5454,0.41881,-0.72605,108.77,-0.79311,0.53808,-0.2854,-25.684,0.27114,0.73149,0.62563,149.33
> view matrix models
> #13,0.5454,0.41881,-0.72605,76.675,-0.79311,0.53808,-0.2854,101.87,0.27114,0.73149,0.62563,161.4
> view matrix models
> #13,0.5454,0.41881,-0.72605,133.74,-0.79311,0.53808,-0.2854,116.56,0.27114,0.73149,0.62563,106.15
> view matrix models
> #13,0.5454,0.41881,-0.72605,161.25,-0.79311,0.53808,-0.2854,99.553,0.27114,0.73149,0.62563,116.12
> view matrix models
> #13,0.5454,0.41881,-0.72605,179.83,-0.79311,0.53808,-0.2854,93.965,0.27114,0.73149,0.62563,155.86
> view matrix models
> #13,0.5454,0.41881,-0.72605,212.83,-0.79311,0.53808,-0.2854,248.5,0.27114,0.73149,0.62563,232.36
> view matrix models
> #13,0.5454,0.41881,-0.72605,223.38,-0.79311,0.53808,-0.2854,244.88,0.27114,0.73149,0.62563,203.67
> view matrix models
> #13,0.5454,0.41881,-0.72605,199.75,-0.79311,0.53808,-0.2854,227.12,0.27114,0.73149,0.62563,178.19
> view matrix models
> #13,0.5454,0.41881,-0.72605,154.17,-0.79311,0.53808,-0.2854,258.26,0.27114,0.73149,0.62563,170.62
> view matrix models
> #13,0.5454,0.41881,-0.72605,162.43,-0.79311,0.53808,-0.2854,276.85,0.27114,0.73149,0.62563,172.83
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 2 atomic models, 0 maps.
> hide #12 models
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 1 atomic models, 0 maps.
> show #!4 models
> fitmap #13 inMap #4
Fit molecule fold_481_526_model_0.cif (#13) to map volume difference (#4)
using 977 atoms
average map value = 0.01657, steps = 252
shifted from previous position = 13.6
rotated from previous position = 34.9 degrees
atoms outside contour = 624, contour level = 0.0183
Position of fold_481_526_model_0.cif (#13) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
0.53066364 0.40688601 -0.74353203 173.12952037
-0.81765033 0.01468191 -0.57552791 274.14455747
-0.22325779 0.91336094 0.34048164 180.64588593
Axis 0.74566042 -0.26056203 -0.61326826
Axis point 0.00000000 73.54920176 326.36833279
Rotation angle (degrees) 93.27258935
Shift along axis -53.12022110
> ui mousemode right "rotate selected models"
> view matrix models
> #13,-0.23143,-0.25674,0.93836,175.2,-0.43401,0.89049,0.1366,275.63,-0.87067,-0.37565,-0.31751,179.03
> fitmap #13 inMap #4
Fit molecule fold_481_526_model_0.cif (#13) to map volume difference (#4)
using 977 atoms
average map value = 0.02113, steps = 984
shifted from previous position = 8.23
rotated from previous position = 161 degrees
atoms outside contour = 365, contour level = 0.0183
Position of fold_481_526_model_0.cif (#13) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
-0.28950191 -0.21877521 0.93184014 167.19790380
0.12333545 -0.97393964 -0.19034166 276.47800583
0.94919809 0.05982465 0.30894013 179.86222725
Axis 0.58977186 -0.04092169 0.80653243
Axis point -1.17982992 144.80738109 0.00000000
Rotation angle (degrees) 167.75529534
Shift along axis 232.35939230
> view matrix models
> #13,-0.20716,-0.20001,0.95764,167.26,0.0044605,-0.97906,-0.20352,276.41,0.9783,-0.037889,0.20371,179.7
> fitmap #13 inMap #4
Fit molecule fold_481_526_model_0.cif (#13) to map volume difference (#4)
using 977 atoms
average map value = 0.02113, steps = 104
shifted from previous position = 0.273
rotated from previous position = 8 degrees
atoms outside contour = 367, contour level = 0.0183
Position of fold_481_526_model_0.cif (#13) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
-0.29107079 -0.22011769 0.93103491 167.25734949
0.11235730 -0.97430218 -0.19522063 276.48274499
0.95008085 0.04778555 0.30832273 179.88482123
Axis 0.58945566 -0.04619941 0.80647854
Axis point -0.65756896 145.40625015 0.00000000
Rotation angle (degrees) 168.10448362
Shift along axis 230.89069926
Smoothing and grouping, standard deviation 5 voxels
Showing 143 region surfaces
Got 143 regions after smoothing 5 voxels.
> view matrix models
> #13,-0.29073,-0.22019,0.93112,167.26,0.11195,-0.9743,-0.19545,276.48,0.95023,0.047418,0.30791,179.88
> select #5.101
1 model selected
> select #5.50
1 model selected
> select add #5.172
2 models selected
Grouped 2 regions
> hide #13 models
> show #12 models
> select add #12
1730 atoms, 1928 bonds, 82 residues, 2 models selected
> view matrix models
> #12,-0.19276,0.43112,-0.88146,231.21,-0.23534,-0.8924,-0.38501,270,-0.9526,0.13323,0.27348,309.3,#5.20,0.99907,0.042338,-0.0083509,-9.9475,-0.042149,0.99888,0.021634,3.3457,0.0092574,-0.021262,0.99973,3.1506
> view matrix models
> #12,-0.21767,0.42054,-0.88078,232.48,-0.20284,-0.9022,-0.38064,267.99,-0.95471,0.095799,0.28169,308.84,#5.20,0.99828,0.056873,0.014479,-19.494,-0.056742,0.99835,-0.0093259,14.459,-0.014985,0.0084882,0.99985,0.24913
> view matrix models
> #12,-0.19677,0.44651,-0.87288,231.54,-0.22551,-0.88702,-0.40291,269.7,-0.95416,0.11756,0.27523,309.14,#5.20,0.99966,0.026084,-0.00048658,-7.8068,-0.026079,0.99963,0.007953,3.3394,0.00069385,-0.0079377,0.99997,1.31
> select add #5
1730 atoms, 1928 bonds, 82 residues, 144 models selected
> select subtract #5
1730 atoms, 1928 bonds, 82 residues, 1 model selected
> select add #5.75
1730 atoms, 1928 bonds, 82 residues, 2 models selected
> select add #5.158
1730 atoms, 1928 bonds, 82 residues, 3 models selected
> select add #5.134
1730 atoms, 1928 bonds, 82 residues, 4 models selected
Grouped 3 regions
> select add #5
1730 atoms, 1928 bonds, 82 residues, 142 models selected
> select subtract #5
1730 atoms, 1928 bonds, 82 residues, 1 model selected
> select subtract #12
Nothing selected
> hide #12 models
> show #12 models
> hide #12 models
> show #14 models
> select add #14
1732 atoms, 1931 bonds, 82 residues, 1 model selected
> view matrix models
> #14,0.96102,-0.24314,0.13164,0.9641,0.23232,0.96825,0.092345,-0.4121,-0.14992,-0.058162,0.98699,0.54923
> ui mousemode right "translate selected models"
> view matrix models
> #14,0.96102,-0.24314,0.13164,176.28,0.23232,0.96825,0.092345,125.11,-0.14992,-0.058162,0.98699,-18.29
> view matrix models
> #14,0.96102,-0.24314,0.13164,128.61,0.23232,0.96825,0.092345,186.17,-0.14992,-0.058162,0.98699,73.211
> view matrix models
> #14,0.96102,-0.24314,0.13164,170.09,0.23232,0.96825,0.092345,289.85,-0.14992,-0.058162,0.98699,150.79
> view matrix models
> #14,0.96102,-0.24314,0.13164,193.71,0.23232,0.96825,0.092345,306.32,-0.14992,-0.058162,0.98699,143.91
> ui mousemode right "rotate selected models"
> view matrix models
> #14,-0.68188,-0.045901,0.73003,198.92,0.73034,0.012604,0.68297,307.36,-0.04055,0.99887,0.024929,140.52
> view matrix models
> #14,-0.79082,0.21147,0.57436,198.3,0.57659,-0.057377,0.81501,308.19,0.20531,0.9757,-0.076559,139.74
> ui mousemode right "translate selected models"
> view matrix models
> #14,-0.79082,0.21147,0.57436,183.97,0.57659,-0.057377,0.81501,306.11,0.20531,0.9757,-0.076559,153.4
> view matrix models
> #14,-0.79082,0.21147,0.57436,182.64,0.57659,-0.057377,0.81501,300.13,0.20531,0.9757,-0.076559,159.8
> fitmap #14 inMap #4
Fit molecule fold_1145_1226_model_0.cif (#14) to map volume difference (#4)
using 1732 atoms
average map value = 0.01839, steps = 764
shifted from previous position = 13.9
rotated from previous position = 37.2 degrees
atoms outside contour = 827, contour level = 0.0183
Position of fold_1145_1226_model_0.cif (#14) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
-0.83161301 0.54880378 0.08505420 194.22900212
0.05320750 -0.07371296 0.99585911 294.79307657
0.55280084 0.83269491 0.03210018 166.71406204
Axis -0.23284827 -0.66751158 -0.70725524
Axis point 76.64761790 54.60040127 0.00000000
Rotation angle (degrees) 159.49030117
Shift along axis -359.91307339
> ui mousemode right "rotate selected models"
> view matrix models
> #14,-0.73988,-0.11707,0.66247,196.36,-0.61509,0.51656,-0.59568,292.66,-0.27247,-0.84821,-0.4542,171.89
> view matrix models
> #14,-0.73102,-0.12581,0.67066,196.36,-0.62919,0.50467,-0.59113,292.73,-0.26409,-0.8541,-0.44808,171.88
> view matrix models
> #14,-0.65343,-0.18363,0.73438,196.31,-0.73297,0.3959,-0.55318,293.29,-0.18916,-0.89974,-0.39329,171.81
> fitmap #14 inMap #4
Fit molecule fold_1145_1226_model_0.cif (#14) to map volume difference (#4)
using 1732 atoms
average map value = 0.01624, steps = 208
shifted from previous position = 11.5
rotated from previous position = 20.2 degrees
atoms outside contour = 966, contour level = 0.0183
Position of fold_1145_1226_model_0.cif (#14) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
-0.51847831 -0.45582283 0.72346789 188.21715442
-0.84963650 0.17921266 -0.49598452 290.11468715
0.09642646 -0.87184194 -0.48020159 164.38828688
Axis -0.45263041 0.75512149 -0.47425441
Axis point 208.54022666 0.00000000 142.55898819
Rotation angle (degrees) 155.46856549
Shift along axis 55.91715855
> fitmap #14 inMap #4
Fit molecule fold_1145_1226_model_0.cif (#14) to map volume difference (#4)
using 1732 atoms
average map value = 0.01624, steps = 48
shifted from previous position = 0.0373
rotated from previous position = 0.323 degrees
atoms outside contour = 966, contour level = 0.0183
Position of fold_1145_1226_model_0.cif (#14) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
-0.51509219 -0.46030458 0.72304891 188.25247947
-0.85142118 0.17753590 -0.49352099 290.12173773
0.09880284 -0.86982797 -0.48336042 164.39780614
Axis -0.45491574 0.75464815 -0.47281903
Axis point 208.92159532 0.00000000 142.45667770
Rotation angle (degrees) 155.56877049
Shift along axis 55.57040615
> view matrix models
> #14,-0.67353,-0.18541,0.71553,187.82,0.73203,-0.30148,0.61094,289,0.10245,0.93527,0.33878,162.43
> fitmap #14 inMap #4
Fit molecule fold_1145_1226_model_0.cif (#14) to map volume difference (#4)
using 1732 atoms
average map value = 0.01839, steps = 772
shifted from previous position = 9.02
rotated from previous position = 58.6 degrees
atoms outside contour = 827, contour level = 0.0183
Position of fold_1145_1226_model_0.cif (#14) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
-0.83265503 0.54669277 0.08838907 194.19764451
0.05520158 -0.07687763 0.99551123 294.79654519
0.55103393 0.83379665 0.03383425 166.68556777
Axis -0.23298924 -0.66655258 -0.70811275
Axis point 76.63000419 54.98983985 0.00000000
Rotation angle (degrees) 159.69343993
Shift along axis -359.77553674
> view
> transparency #5#4.1 0
> transparency #5#4.1 50
> view matrix models
> #14,-0.75226,0.26542,-0.60305,193.33,-0.038287,0.89612,0.44216,292.46,0.65776,0.35571,-0.66395,166.11
> ui mousemode right "translate selected models"
> view matrix models
> #14,-0.75226,0.26542,-0.60305,249.66,-0.038287,0.89612,0.44216,167.67,0.65776,0.35571,-0.66395,228.28
> view matrix models
> #14,-0.75226,0.26542,-0.60305,183.65,-0.038287,0.89612,0.44216,165.39,0.65776,0.35571,-0.66395,190.25
> ui mousemode right "rotate selected models"
> view matrix models
> #14,-0.787,-0.44621,-0.42605,185.83,-0.0093512,0.69912,-0.71494,163.77,0.61688,-0.55868,-0.55439,192.65
> view matrix models
> #14,0.70897,-0.37498,-0.59729,181.47,-0.55767,0.22035,-0.80028,166.38,0.4317,0.90046,-0.052897,191.42
> view matrix models
> #14,0.75674,0.1693,-0.63142,180.15,-0.63744,0.40529,-0.65529,166.3,0.14497,0.89837,0.41462,192.89
> ui mousemode right "translate selected models"
> view matrix models
> #14,0.75674,0.1693,-0.63142,219.46,-0.63744,0.40529,-0.65529,135.65,0.14497,0.89837,0.41462,173.38
> fitmap #14 inMap #4
Fit molecule fold_1145_1226_model_0.cif (#14) to map volume difference (#4)
using 1732 atoms
average map value = 0.0163, steps = 424
shifted from previous position = 20.6
rotated from previous position = 23.1 degrees
atoms outside contour = 1011, contour level = 0.0183
Position of fold_1145_1226_model_0.cif (#14) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
0.46469456 0.23354296 -0.85411747 203.53716941
-0.82648914 0.46055773 -0.32373181 147.20256725
0.31776512 0.85635522 0.40703939 175.67853584
Axis 0.59836000 -0.59419997 -0.53748647
Axis point 0.00000000 32.98270397 289.42615349
Rotation angle (degrees) 80.43619493
Shift along axis -60.10409495
> ui mousemode right "rotate selected models"
> view matrix models
> #14,0.5318,0.14184,-0.8349,203.53,-0.75778,0.51985,-0.39436,146.81,0.37809,0.8424,0.38395,175.5
> view matrix models
> #14,0.74575,-0.56257,-0.35689,205.03,0.18367,0.68854,-0.70156,143.44,0.64041,0.45764,0.6168,175.63
> view matrix models
> #14,0.087484,0.56744,-0.81876,204.16,-0.97663,0.21082,0.041755,148.56,0.1963,0.79597,0.57262,176.2
> fitmap #14 inMap #4
Fit molecule fold_1145_1226_model_0.cif (#14) to map volume difference (#4)
using 1732 atoms
average map value = 0.01608, steps = 404
shifted from previous position = 3.19
rotated from previous position = 18 degrees
atoms outside contour = 1031, contour level = 0.0183
Position of fold_1145_1226_model_0.cif (#14) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
0.32874977 0.37444311 -0.86701554 204.42271841
-0.91196124 0.36446815 -0.18838701 148.10299712
0.24545933 0.85261675 0.46129643 173.33317422
Axis 0.52206222 -0.55790490 -0.64513034
Axis point 255.38233669 -210.43784954 0.00000000
Rotation angle (degrees) 85.56907457
Shift along axis -87.72849996
> ui mousemode right "translate selected models"
> view matrix models
> #14,0.32875,0.37444,-0.86702,105.41,-0.91196,0.36447,-0.18839,190.42,0.24546,0.85262,0.4613,251.9
> view matrix models
> #14,0.32875,0.37444,-0.86702,241.97,-0.91196,0.36447,-0.18839,268.32,0.24546,0.85262,0.4613,191.83
> view matrix models
> #14,0.32875,0.37444,-0.86702,214.81,-0.91196,0.36447,-0.18839,159.61,0.24546,0.85262,0.4613,218.81
> view matrix models
> #14,0.32875,0.37444,-0.86702,204.54,-0.91196,0.36447,-0.18839,165.03,0.24546,0.85262,0.4613,168.31
> view matrix models
> #14,0.32875,0.37444,-0.86702,207.96,-0.91196,0.36447,-0.18839,136.2,0.24546,0.85262,0.4613,159.97
> view matrix models
> #14,0.32875,0.37444,-0.86702,266.4,-0.91196,0.36447,-0.18839,145.38,0.24546,0.85262,0.4613,147.27
> view matrix models
> #14,0.32875,0.37444,-0.86702,270.04,-0.91196,0.36447,-0.18839,157.71,0.24546,0.85262,0.4613,159.98
> fitmap #14 inMap #4
Fit molecule fold_1145_1226_model_0.cif (#14) to map volume difference (#4)
using 1732 atoms
average map value = 0.0148, steps = 244
shifted from previous position = 23.5
rotated from previous position = 39.5 degrees
atoms outside contour = 1280, contour level = 0.0183
Position of fold_1145_1226_model_0.cif (#14) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
0.40756279 0.03277528 -0.91258882 279.12263590
-0.89630159 -0.17687903 -0.40664144 179.00253061
-0.17474562 0.98368673 -0.04271277 166.99993829
Axis 0.76068440 -0.40369304 -0.50832192
Axis point 0.00000000 80.23747791 262.75101138
Rotation angle (degrees) 113.95471724
Shift along axis 55.17242978
> view matrix models
> #14,0.40756,0.032775,-0.91259,210.99,-0.8963,-0.17688,-0.40664,164.89,-0.17475,0.98369,-0.042713,170.91
> view matrix models
> #14,0.40756,0.032775,-0.91259,140.83,-0.8963,-0.17688,-0.40664,241.95,-0.17475,0.98369,-0.042713,264.4
> view matrix models
> #14,0.40756,0.032775,-0.91259,122.59,-0.8963,-0.17688,-0.40664,301.49,-0.17475,0.98369,-0.042713,257.86
> view matrix models
> #14,0.40756,0.032775,-0.91259,193.29,-0.8963,-0.17688,-0.40664,311.14,-0.17475,0.98369,-0.042713,238.28
> ui mousemode right "rotate selected models"
> view matrix models
> #14,-0.83996,-0.16262,-0.5177,197.51,0.52436,-0.48884,-0.6972,307.47,-0.13969,-0.85708,0.49588,241.93
> fitmap #14 inMap #4
Fit molecule fold_1145_1226_model_0.cif (#14) to map volume difference (#4)
using 1732 atoms
average map value = 0.01972, steps = 412
shifted from previous position = 14.9
rotated from previous position = 19 degrees
atoms outside contour = 696, contour level = 0.0183
Position of fold_1145_1226_model_0.cif (#14) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
-0.82125907 -0.17806412 -0.54205785 210.52662693
0.56867804 -0.17845419 -0.80296911 306.61020750
0.04624750 -0.96770205 0.24781828 235.03496951
Axis -0.17074082 -0.60976105 0.77397612
Axis point 84.40476719 279.69980866 0.00000000
Rotation angle (degrees) 151.15730982
Shift along axis -40.99299780
> show #!10 models
> show #!11 models
> show #12 models
> show #13 models
> show #!9 models
> show #!8 models
> show #!7 models
> show #!6 models
> hide #!5 models
> hide #!4 models
> hide #!6 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #12 models
> hide #13 models
> show #!4 models
> show #!5 models
> select add #5.117
1732 atoms, 1931 bonds, 82 residues, 2 models selected
> select add #5.24
1732 atoms, 1931 bonds, 82 residues, 3 models selected
> select add #5.41
1732 atoms, 1931 bonds, 82 residues, 4 models selected
Grouped 3 regions
> select add #5
1732 atoms, 1931 bonds, 82 residues, 140 models selected
> select subtract #5
1732 atoms, 1931 bonds, 82 residues, 1 model selected
> hide #14 models
> select subtract #14
Nothing selected
> show #15 models
> select add #15
1357 atoms, 1516 bonds, 64 residues, 1 model selected
> view matrix models
> #15,0.94629,-0.040836,-0.32073,0.18449,5.6052e-05,0.99201,-0.12614,0.063665,0.32332,0.11935,0.93873,-0.12846
> ui mousemode right "translate selected models"
> view matrix models
> #15,0.94629,-0.040836,-0.32073,234.53,5.6052e-05,0.99201,-0.12614,205.02,0.32332,0.11935,0.93873,69.936
> view matrix models
> #15,0.94629,-0.040836,-0.32073,216.49,5.6052e-05,0.99201,-0.12614,180.11,0.32332,0.11935,0.93873,173.81
> view orient
> view matrix models
> #15,0.94629,-0.040836,-0.32073,226.31,5.6052e-05,0.99201,-0.12614,101.77,0.32332,0.11935,0.93873,195.39
> view matrix models
> #15,0.94629,-0.040836,-0.32073,265.17,5.6052e-05,0.99201,-0.12614,161.4,0.32332,0.11935,0.93873,156.61
> ui mousemode right "rotate selected models"
> view matrix models
> #15,0.32124,0.48974,-0.81053,264.41,-0.19225,0.8718,0.45057,161.36,0.92728,0.011091,0.37421,157.1
> fitmap #15 inMap #4
Fit molecule fold_3433_3497_model_0.cif (#15) to map volume difference (#4)
using 1357 atoms
average map value = 0.01307, steps = 460
shifted from previous position = 4.59
rotated from previous position = 5.92 degrees
atoms outside contour = 1103, contour level = 0.0183
Position of fold_3433_3497_model_0.cif (#15) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
0.26620256 0.42475967 -0.86528343 266.97304516
-0.15212141 0.90493752 0.39742568 164.63677951
0.95183784 0.02583240 0.30551173 159.10206547
Axis -0.19130917 -0.93551735 -0.29699849
Axis point 59.30304186 0.00000000 202.45405024
Rotation angle (degrees) 76.21224505
Shift along axis -252.34802583
> view matrix models
> #15,0.3451,0.91293,-0.21788,266.28,0.42691,-0.35942,-0.8298,166.67,-0.83586,0.19335,-0.51377,158.08
> fitmap #15 inMap #4
Fit molecule fold_3433_3497_model_0.cif (#15) to map volume difference (#4)
using 1357 atoms
average map value = 0.01674, steps = 684
shifted from previous position = 6.7
rotated from previous position = 62.8 degrees
atoms outside contour = 763, contour level = 0.0183
Position of fold_3433_3497_model_0.cif (#15) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
0.06107634 0.25102357 -0.96605220 265.43068961
0.12460655 -0.96220505 -0.24214595 159.98365345
-0.99032464 -0.10558704 -0.09004714 159.38520807
Axis 0.72766766 0.12933810 -0.67362559
Axis point -0.00000000 48.93572610 207.27549521
Rotation angle (degrees) 174.61582725
Shift along axis 106.47135550
> show #14 models
> show #13 models
> show #12 models
> show #!11 models
> show #!10 models
> show #!9 models
> show #!8 models
> show #!7 models
> show #!6 models
> hide #!5 models
> hide #!4 models
> show #!5 models
> show #!4 models
> hide #!6 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #12 models
> hide #13 models
> hide #14 models
> select add #5.124
1357 atoms, 1516 bonds, 64 residues, 2 models selected
> select add #5.183
1357 atoms, 1516 bonds, 64 residues, 3 models selected
> select add #5.186
1357 atoms, 1516 bonds, 64 residues, 4 models selected
Grouped 3 regions
> select add #5
1357 atoms, 1516 bonds, 64 residues, 138 models selected
> select subtract #5
1357 atoms, 1516 bonds, 64 residues, 1 model selected
> select subtract #15
Nothing selected
> hide #15 models
> show #16 models
> select add #16
1225 atoms, 1365 bonds, 58 residues, 1 model selected
> view matrix models
> #16,0.70368,-0.25226,-0.66422,0.74839,0.34112,0.94001,0.0043886,-0.19035,0.62327,-0.22967,0.74752,-0.26872
> view matrix models
> #16,0.31336,0.68103,-0.66182,-0.16265,0.11793,0.66362,0.73872,0.41751,0.94228,-0.30953,0.12764,-0.47576
> ui mousemode right "translate selected models"
> view matrix models
> #16,0.31336,0.68103,-0.66182,113.83,0.11793,0.66362,0.73872,-27.681,0.94228,-0.30953,0.12764,-15.002
> view matrix models
> #16,0.31336,0.68103,-0.66182,19.157,0.11793,0.66362,0.73872,181.32,0.94228,-0.30953,0.12764,240.05
> view matrix models
> #16,0.31336,0.68103,-0.66182,172.56,0.11793,0.66362,0.73872,248.26,0.94228,-0.30953,0.12764,183.37
> view matrix models
> #16,0.31336,0.68103,-0.66182,167.27,0.11793,0.66362,0.73872,301.06,0.94228,-0.30953,0.12764,209.71
> view matrix models
> #16,0.31336,0.68103,-0.66182,62.683,0.11793,0.66362,0.73872,268.57,0.94228,-0.30953,0.12764,277.64
> view matrix models
> #16,0.31336,0.68103,-0.66182,211.04,0.11793,0.66362,0.73872,271.32,0.94228,-0.30953,0.12764,267.34
> view matrix models
> #16,0.31336,0.68103,-0.66182,169.19,0.11793,0.66362,0.73872,202.12,0.94228,-0.30953,0.12764,301.43
> view matrix models
> #16,0.31336,0.68103,-0.66182,235.42,0.11793,0.66362,0.73872,143.66,0.94228,-0.30953,0.12764,277.8
> view matrix models
> #16,0.31336,0.68103,-0.66182,281.62,0.11793,0.66362,0.73872,139.76,0.94228,-0.30953,0.12764,220.66
> view matrix models
> #16,0.31336,0.68103,-0.66182,264.52,0.11793,0.66362,0.73872,185.33,0.94228,-0.30953,0.12764,208.49
> view matrix models
> #16,0.31336,0.68103,-0.66182,195.24,0.11793,0.66362,0.73872,154.39,0.94228,-0.30953,0.12764,173.64
> view matrix models
> #16,0.31336,0.68103,-0.66182,205.83,0.11793,0.66362,0.73872,151.02,0.94228,-0.30953,0.12764,172.17
> ui mousemode right "rotate selected models"
> view matrix models
> #16,-0.68098,-0.60975,0.40556,209.38,-0.72424,0.64274,-0.24972,151.53,-0.1084,-0.46377,-0.8793,173.03
> view matrix models
> #16,-0.60169,-0.67383,0.42886,209.38,-0.79867,0.51438,-0.31232,151.69,-0.010146,-0.53044,-0.84766,173.02
> ui mousemode right "translate selected models"
> view matrix models
> #16,-0.60169,-0.67383,0.42886,208.5,-0.79867,0.51438,-0.31232,139.4,-0.010146,-0.53044,-0.84766,176.16
> fitmap #16 inMap #4
Fit molecule fold_2697_2754_model_0.cif (#16) to map volume difference (#4)
using 1225 atoms
average map value = 0.01786, steps = 148
shifted from previous position = 10.4
rotated from previous position = 13.6 degrees
atoms outside contour = 627, contour level = 0.0183
Position of fold_2697_2754_model_0.cif (#16) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
-0.47096302 -0.78697034 0.39858689 206.23586357
-0.86462103 0.32216392 -0.38553971 143.59312819
0.17499801 -0.52620156 -0.83215841 166.89433968
Axis -0.51088198 0.81207190 -0.28202628
Axis point 154.96257823 0.00000000 100.37860316
Rotation angle (degrees) 172.08720742
Shift along axis -35.82283146
> view matrix models
> #16,-0.47096,-0.78697,0.39859,199.29,-0.86462,0.32216,-0.38554,173.97,0.175,-0.5262,-0.83216,155.57
> ui mousemode right "rotate selected models"
> view matrix models
> #16,-0.23907,0.57724,0.78079,197.56,-0.5363,-0.74883,0.3894,175.17,0.80946,-0.32565,0.4886,155.15
> view matrix models
> #16,0.15547,0.70786,0.68903,197.03,-0.47299,-0.55901,0.68102,174.96,0.86724,-0.43178,0.2479,155.19
> view matrix models
> #16,-0.33132,0.18395,0.92541,197.85,-0.94326,-0.087793,-0.32025,174.24,0.022334,-0.97901,0.2026,156.28
> view matrix models
> #16,-0.97174,-0.033689,0.23364,198.78,-0.11763,0.92723,-0.35554,172.16,-0.20466,-0.37298,-0.90499,155.59
> ui mousemode right "translate selected models"
> view matrix models
> #16,-0.97174,-0.033689,0.23364,192.5,-0.11763,0.92723,-0.35554,164.21,-0.20466,-0.37298,-0.90499,160.28
> fitmap #16 inMap #4
Fit molecule fold_2697_2754_model_0.cif (#16) to map volume difference (#4)
using 1225 atoms
average map value = 0.01693, steps = 152
shifted from previous position = 12.7
rotated from previous position = 20.2 degrees
atoms outside contour = 668, contour level = 0.0183
Position of fold_2697_2754_model_0.cif (#16) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
-0.84359601 -0.20716160 0.49540876 200.90436988
-0.40283743 0.85418318 -0.32877516 169.58018339
-0.35506024 -0.47692260 -0.80403797 152.68456260
Axis -0.16736521 0.96079228 -0.22105900
Axis point 136.32811163 0.00000000 69.51244059
Rotation angle (degrees) 153.73091963
Shift along axis 95.55463267
> view matrix models
> #16,-0.8436,-0.20716,0.49541,171.71,-0.40284,0.85418,-0.32878,224.6,-0.35506,-0.47692,-0.80404,225.21
> view matrix models
> #16,-0.8436,-0.20716,0.49541,241.36,-0.40284,0.85418,-0.32878,203.24,-0.35506,-0.47692,-0.80404,238.49
> view matrix models
> #16,-0.8436,-0.20716,0.49541,226.91,-0.40284,0.85418,-0.32878,166.14,-0.35506,-0.47692,-0.80404,258.13
> view matrix models
> #16,-0.8436,-0.20716,0.49541,204.73,-0.40284,0.85418,-0.32878,207.61,-0.35506,-0.47692,-0.80404,188.83
> view matrix models
> #16,-0.8436,-0.20716,0.49541,228.49,-0.40284,0.85418,-0.32878,181.06,-0.35506,-0.47692,-0.80404,201.84
> view matrix models
> #16,-0.8436,-0.20716,0.49541,238.18,-0.40284,0.85418,-0.32878,142.46,-0.35506,-0.47692,-0.80404,205.51
> view matrix models
> #16,-0.8436,-0.20716,0.49541,202.43,-0.40284,0.85418,-0.32878,144.07,-0.35506,-0.47692,-0.80404,174.58
> fitmap #16 inMap #4
Fit molecule fold_2697_2754_model_0.cif (#16) to map volume difference (#4)
using 1225 atoms
average map value = 0.01786, steps = 536
shifted from previous position = 8.68
rotated from previous position = 46.8 degrees
atoms outside contour = 628, contour level = 0.0183
Position of fold_2697_2754_model_0.cif (#16) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
-0.47236546 -0.78695782 0.39694868 206.24153020
-0.86390452 0.32408385 -0.38553682 143.59924448
0.17475656 -0.52504004 -0.83294244 166.89381375
Axis -0.51024048 0.81267956 -0.28143665
Axis point 154.82949075 0.00000000 100.36296522
Rotation angle (degrees) 172.14286895
Shift along axis -35.50264131
> view matrix models
> #16,-0.47237,-0.78696,0.39695,211.84,-0.8639,0.32408,-0.38554,137.05,0.17476,-0.52504,-0.83294,167.5
> ui mousemode right "rotate selected models"
> view matrix models
> #16,0.14533,0.5851,0.79783,209.8,-0.41422,-0.69634,0.58612,138.13,0.8985,-0.41566,0.14116,167.05
> view matrix models
> #16,0.9715,-0.10146,0.21423,210.05,0.2166,0.74716,-0.62836,135.86,-0.096308,0.65686,0.74784,166.32
> fitmap #16 inMap #4
Fit molecule fold_2697_2754_model_0.cif (#16) to map volume difference (#4)
using 1225 atoms
average map value = 0.01647, steps = 624
shifted from previous position = 12.9
rotated from previous position = 29.5 degrees
atoms outside contour = 673, contour level = 0.0183
Position of fold_2697_2754_model_0.cif (#16) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
0.76869483 -0.44287060 0.46149093 207.55607943
0.60489962 0.73782844 -0.29950901 147.15359267
-0.20785739 0.50938672 0.83505717 160.86286212
Axis 0.54533732 0.45125794 0.70638055
Axis point 18.02830996 98.17936992 0.00000000
Rotation angle (degrees) 47.87191623
Shift along axis 293.22269995
> view matrix models
> #16,-0.19313,-0.45887,0.86726,208.43,-0.86619,0.49493,0.068969,148.95,-0.46088,-0.7379,-0.49305,162.9
> view matrix models
> #16,-0.91476,0.25594,-0.31257,207.43,0.03303,0.81851,0.57355,148.12,0.40264,0.51434,-0.75719,160.55
> ui mousemode right "translate selected models"
> view matrix models
> #16,-0.91476,0.25594,-0.31257,208.23,0.03303,0.81851,0.57355,135.3,0.40264,0.51434,-0.75719,169.66
> fitmap #16 inMap #4
Fit molecule fold_2697_2754_model_0.cif (#16) to map volume difference (#4)
using 1225 atoms
average map value = 0.01786, steps = 848
shifted from previous position = 8.08
rotated from previous position = 103 degrees
atoms outside contour = 628, contour level = 0.0183
Position of fold_2697_2754_model_0.cif (#16) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
-0.47316429 -0.78692903 0.39605334 206.24155111
-0.86352770 0.32525721 -0.38539287 143.61017302
0.17445763 -0.52435718 -0.83343511 166.89212319
Axis -0.50986862 0.81304832 -0.28104523
Axis point 154.75858789 0.00000000 100.34198320
Rotation angle (degrees) 172.16766812
Shift along axis -35.29831907
> view matrix models
> #16,-0.47316,-0.78693,0.39605,211.31,-0.86353,0.32526,-0.38539,133.85,0.17446,-0.52436,-0.83344,177.27
> ui mousemode right "rotate selected models"
> view matrix models
> #16,-0.92273,0.10013,-0.37222,210.21,-0.13765,0.81641,0.56083,132.91,0.36004,0.56873,-0.73954,175.69
> view matrix models
> #16,-0.70788,0.62393,-0.33109,209.49,0.094903,0.5485,0.83074,132.98,0.69993,0.55665,-0.44749,175.42
> view matrix models
> #16,-0.57228,0.77692,-0.26248,209.29,0.14918,0.41336,0.89827,133.09,0.80638,0.4749,-0.35245,175.46
> fitmap #16 inMap #4
Fit molecule fold_2697_2754_model_0.cif (#16) to map volume difference (#4)
using 1225 atoms
average map value = 0.01926, steps = 152
shifted from previous position = 10.3
rotated from previous position = 22.4 degrees
atoms outside contour = 526, contour level = 0.0183
Position of fold_2697_2754_model_0.cif (#16) relative to volume difference
(#4) coordinates:
Matrix rotation and translation
-0.45208712 0.84460087 -0.28682156 204.23352965
0.46431148 0.49739039 0.73281488 134.72176142
0.76159837 0.19812163 -0.61702167 184.35076673
Axis -0.43231608 -0.84768004 -0.30747577
Axis point 46.38589153 0.00000000 86.57107180
Rotation angle (degrees) 141.80021394
Shift along axis -259.17778192
> select add #5.46
1225 atoms, 1365 bonds, 58 residues, 2 models selected
> select add #5.167
1225 atoms, 1365 bonds, 58 residues, 3 models selected
> select add #5.17
1225 atoms, 1365 bonds, 58 residues, 4 models selected
> select add #5.153
1225 atoms, 1365 bonds, 58 residues, 5 models selected
Grouped 4 regions
> show #15 models
> select subtract #16
1 model selected
> show #14 models
> show #13 models
> show #12 models
> hide #12 models
> hide #13 models
> hide #14 models
> hide #15 models
> hide #16 models
> open /Users/ndeese/Downloads/fold_pin_1/fold_pin_1_model_0.cif
Chain information for fold_pin_1_model_0.cif #17
---
Chain | Description
A | .
Computing secondary structure
> open /Users/ndeese/Downloads/fold_pin_2/fold_pin_2_model_0.cif
Chain information for fold_pin_2_model_0.cif #18
---
Chain | Description
A | .
Computing secondary structure
> open /Users/ndeese/Downloads/fold_pin_3/fold_pin_3_model_0.cif
Chain information for fold_pin_3_model_0.cif #19
---
Chain | Description
A | .
Computing secondary structure
> open /Users/ndeese/Downloads/fold_pin4/fold_pin4_model_0.cif
Chain information for fold_pin4_model_0.cif #20
---
Chain | Description
A | .
Computing secondary structure
> open /Users/ndeese/Downloads/fold_5th_loop/fold_5th_loop_model_0.cif
Chain information for fold_5th_loop_model_0.cif #21
---
Chain | Description
A | .
Computing secondary structure
> show #!11 models
> hide #18 models
> hide #19 models
> hide #20 models
> hide #21 models
> hide #!4 models
> hide #!5 models
> select add #5
134 models selected
> select subtract #5
Nothing selected
> select add #17
2078 atoms, 2320 bonds, 98 residues, 1 model selected
> view matrix models
> #17,0.46027,0.85976,0.22128,-0.31261,-0.7878,0.28063,0.54829,-2.4438,0.4093,-0.42669,0.80648,0.46387
> ui mousemode right "translate selected models"
> view matrix models
> #17,0.46027,0.85976,0.22128,86.409,-0.7878,0.28063,0.54829,182.2,0.4093,-0.42669,0.80648,-71.927
> view matrix models
> #17,0.46027,0.85976,0.22128,229.89,-0.7878,0.28063,0.54829,247.2,0.4093,-0.42669,0.80648,81.875
> view matrix models
> #17,0.46027,0.85976,0.22128,195.66,-0.7878,0.28063,0.54829,244.29,0.4093,-0.42669,0.80648,114.62
> ui mousemode right "rotate selected models"
> view matrix models
> #17,0.51239,0.51803,0.68491,196.19,0.032513,-0.80869,0.58733,245.63,0.85813,-0.27868,-0.43121,115.13
> ui mousemode right "translate selected models"
> view matrix models
> #17,0.51239,0.51803,0.68491,206.23,0.032513,-0.80869,0.58733,244.58,0.85813,-0.27868,-0.43121,151.15
> fitmap #17 inMap #11
Fit molecule fold_pin_1_model_0.cif (#17) to map ONESEGFIT.mrc (#11) using
2078 atoms
average map value = 0.01245, steps = 2000
shifted from previous position = 6.1
rotated from previous position = 127 degrees
atoms outside contour = 1187, contour level = 0.019016
Position of fold_pin_1_model_0.cif (#17) relative to ONESEGFIT.mrc (#11)
coordinates:
Matrix rotation and translation
0.10997358 -0.48177551 0.86936652 202.19316715
0.99206790 0.10678590 -0.06631774 240.56166441
-0.06088582 0.86976383 0.48969765 149.07849484
Axis 0.47316496 0.47021844 0.74498963
Axis point 1.55806497 102.67234570 0.00000000
Rotation angle (degrees) 98.43987257
Shift along axis 319.84918376
Smoothing and grouping, standard deviation 6 voxels
Showing 95 region surfaces
Got 95 regions after smoothing 6 voxels.
> hide #17 models
> select subtract #17
2 models selected
> hide #!11 models
> select subtract #11
Nothing selected
> show #!10 models
> show #18 models
> view orient
> select add #18
1718 atoms, 1918 bonds, 81 residues, 1 model selected
> view matrix models #18,1,0,0,224.51,0,1,0,242.5,0,0,1,0
> view matrix models #18,1,0,0,236.96,0,1,0,298.34,0,0,1,0
> view matrix models #18,1,0,0,347.66,0,1,0,252.57,0,0,1,91.012
> view
> view matrix models #18,1,0,0,309.97,0,1,0,222.85,0,0,1,71.851
> view matrix models #18,1,0,0,291.48,0,1,0,298.77,0,0,1,235.5
> view matrix models #18,1,0,0,196.17,0,1,0,276.13,0,0,1,233.43
> ui mousemode right "rotate selected models"
> view matrix models
> #18,0.96986,-0.17384,-0.17073,196.21,-0.036122,-0.79553,0.60484,276.4,-0.24097,-0.58044,-0.77783,233.54
> fitmap #18 inMap #10
Fit molecule fold_pin_2_model_0.cif (#18) to map SecSegFit.mrc (#10) using
1718 atoms
average map value = 0.007523, steps = 676
shifted from previous position = 15.5
rotated from previous position = 53.8 degrees
atoms outside contour = 1274, contour level = 0.018833
Position of fold_pin_2_model_0.cif (#18) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
0.74039284 0.02713672 0.67162641 188.14609544
-0.49087997 -0.66075509 0.56783762 264.65304960
0.45918982 -0.75011087 -0.47589746 239.58205068
Axis -0.92039216 0.14835555 -0.36175807
Axis point 0.00000000 184.08836038 14.70302415
Rotation angle (degrees) 134.27715393
Shift along axis -220.57618307
> view matrix models
> #18,-0.97115,-0.10318,0.21498,191.1,0.044078,0.80833,0.58708,263.59,-0.23435,0.57962,-0.78046,240.64
> fitmap #18 inMap #10
Fit molecule fold_pin_2_model_0.cif (#18) to map SecSegFit.mrc (#10) using
1718 atoms
average map value = 0.007656, steps = 432
shifted from previous position = 14.4
rotated from previous position = 35.6 degrees
atoms outside contour = 1254, contour level = 0.018833
Position of fold_pin_2_model_0.cif (#18) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
-0.92471949 0.02932500 -0.37951800 185.00773914
-0.22008757 0.77228723 0.59593112 274.57289690
0.31057258 0.63459632 -0.70769498 248.02039570
Axis 0.05262024 -0.93915813 -0.33943057
Axis point 86.49205469 0.00000000 94.91366728
Rotation angle (degrees) 158.44473481
Shift along axis -332.31792212
> view matrix models
> #18,-0.61314,0.31918,-0.72262,184.34,0.3679,-0.69412,-0.61874,273.38,-0.69908,-0.64523,0.30817,250.2
> ui mousemode right "translate selected models"
> view matrix models
> #18,-0.61314,0.31918,-0.72262,186.9,0.3679,-0.69412,-0.61874,267.99,-0.69908,-0.64523,0.30817,245.23
> fitmap #18 inMap #10
Fit molecule fold_pin_2_model_0.cif (#18) to map SecSegFit.mrc (#10) using
1718 atoms
average map value = 0.006226, steps = 456
shifted from previous position = 6.53
rotated from previous position = 32.2 degrees
atoms outside contour = 1367, contour level = 0.018833
Position of fold_pin_2_model_0.cif (#18) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
-0.11267963 0.30975858 -0.94411489 182.19108995
0.41216745 -0.84999308 -0.32806974 272.82173574
-0.90411354 -0.42610020 -0.03189550 242.96834246
Axis -0.66551009 -0.27156151 0.69523425
Axis point 200.34075545 188.22857792 0.00000000
Rotation angle (degrees) 175.77630618
Shift along axis -26.41797622
> fitmap #18 inMap #10
Fit molecule fold_pin_2_model_0.cif (#18) to map SecSegFit.mrc (#10) using
1718 atoms
average map value = 0.006223, steps = 44
shifted from previous position = 0.0405
rotated from previous position = 0.604 degrees
atoms outside contour = 1369, contour level = 0.018833
Position of fold_pin_2_model_0.cif (#18) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
-0.10322919 0.30599511 -0.94641995 182.21832745
0.41434508 -0.85178569 -0.32059211 272.85166300
-0.90424659 -0.42523891 -0.03885843 242.94703449
Axis -0.66898372 -0.26960492 0.69265718
Axis point 200.92393767 188.34496099 0.00000000
Rotation angle (degrees) 175.51412828
Shift along axis -27.18423652
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #18,-0.89601,0.42226,-0.13735,183.89,-0.14149,-0.56471,-0.81307,273.67,-0.42089,-0.70909,0.56573,242.29
> view matrix models
> #18,0.97625,0.19661,0.090992,180.51,0.070445,-0.68526,0.72488,273.65,0.20487,-0.70125,-0.68284,240.89
> view matrix models
> #18,0.47859,0.36065,-0.80055,181.13,0.78953,-0.5757,0.21265,272.12,-0.38418,-0.73383,-0.56027,242.04
> view matrix models
> #18,0.50561,0.25805,-0.82326,181.09,0.71678,-0.65674,0.23436,272.26,-0.48019,-0.70859,-0.51702,242.21
> view matrix models
> #18,0.6457,0.1553,-0.74763,180.88,0.68199,-0.55768,0.47316,272.37,-0.34346,-0.8154,-0.46601,242
> ui mousemode right "translate selected models"
> view matrix models
> #18,0.6457,0.1553,-0.74763,185.77,0.68199,-0.55768,0.47316,272.66,-0.34346,-0.8154,-0.46601,243.14
> fitmap #18 inMap #10
Fit molecule fold_pin_2_model_0.cif (#18) to map SecSegFit.mrc (#10) using
1718 atoms
average map value = 0.007904, steps = 412
shifted from previous position = 6.59
rotated from previous position = 77.3 degrees
atoms outside contour = 1238, contour level = 0.018833
Position of fold_pin_2_model_0.cif (#18) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
-0.55640701 -0.01849997 -0.83070391 185.21899408
0.55786669 -0.74923559 -0.35697449 273.58756304
-0.61578892 -0.66204515 0.42720046 249.74806596
Axis -0.44430406 -0.31300159 0.83941879
Axis point 128.47805125 204.84288414 0.00000000
Rotation angle (degrees) 159.92115512
Shift along axis 41.71632654
> ui mousemode right "rotate selected models"
> view matrix models
> #18,0.12711,-0.28398,-0.95037,183.95,0.39424,-0.86474,0.31112,274.09,-0.91017,-0.41422,0.002043,250.12
> view matrix models
> #18,-0.51395,-0.41763,-0.74929,185.09,0.5603,-0.82485,0.07542,273.63,-0.64955,-0.38107,0.65793,249.83
> view matrix models
> #18,-0.27514,0.23704,-0.93172,184.53,0.59491,-0.71933,-0.35868,273.44,-0.75524,-0.65298,0.056902,249.89
> view matrix models
> #18,0.93086,-0.1686,-0.32416,182.57,0.18305,-0.55262,0.81308,274.42,-0.31622,-0.8162,-0.48355,249.01
> view matrix models
> #18,0.9642,0.10168,-0.24493,182.5,0.22388,-0.80712,0.5463,274.28,-0.14214,-0.58157,-0.80098,248.55
> fitmap #18 inMap #10
Fit molecule fold_pin_2_model_0.cif (#18) to map SecSegFit.mrc (#10) using
1718 atoms
average map value = 0.006594, steps = 352
shifted from previous position = 6.32
rotated from previous position = 27.7 degrees
atoms outside contour = 1310, contour level = 0.018833
Position of fold_pin_2_model_0.cif (#18) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
0.97440423 0.12474910 0.18701351 188.20374327
-0.04653014 -0.70196483 0.71069003 273.10219937
0.21993485 -0.70120114 -0.67819291 245.89214820
Axis -0.99245610 -0.02314129 -0.12039676
Axis point 0.00000000 180.46059939 55.14240190
Rotation angle (degrees) 134.65826430
Shift along axis -222.70850633
> show #19 models
> select add #19
3332 atoms, 3720 bonds, 157 residues, 2 models selected
> select subtract #18
1614 atoms, 1802 bonds, 76 residues, 1 model selected
> view matrix models
> #19,0.94954,-0.27648,-0.14811,0.33168,0.23153,0.93641,-0.26368,-0.4406,0.21159,0.21608,0.95317,-0.62521
> view matrix models
> #19,0.59289,0.42395,0.68465,0.050873,-0.7866,0.48698,0.37962,1.9194,-0.17247,-0.76362,0.6222,1.311
> hide #18 models
> view matrix models
> #19,0.99517,-0.082214,-0.05365,0.092399,0.077911,0.99391,-0.077889,-0.19309,0.059727,0.073333,0.99552,-0.22397
> ui mousemode right "translate selected models"
> view matrix models
> #19,0.99517,-0.082214,-0.05365,103.24,0.077911,0.99391,-0.077889,324.6,0.059727,0.073333,0.99552,132.34
> view matrix models
> #19,0.99517,-0.082214,-0.05365,197.44,0.077911,0.99391,-0.077889,247.3,0.059727,0.073333,0.99552,203.29
> ui mousemode right "rotate selected models"
> view matrix models
> #19,0.8284,-0.14927,-0.53987,197.54,0.5545,0.082201,0.82812,248.01,-0.079236,-0.98537,0.15087,204.57
> ui mousemode right "translate selected models"
> view matrix models
> #19,0.8284,-0.14927,-0.53987,177.92,0.5545,0.082201,0.82812,280.79,-0.079236,-0.98537,0.15087,250.65
> fitmap #19 inMap #10
Fit molecule fold_pin_3_model_0.cif (#19) to map SecSegFit.mrc (#10) using
1614 atoms
average map value = 0.005631, steps = 132
shifted from previous position = 5.98
rotated from previous position = 13.9 degrees
atoms outside contour = 1295, contour level = 0.018833
Position of fold_pin_3_model_0.cif (#19) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
0.87800394 -0.26036086 -0.40164820 179.67539711
0.40539208 -0.04165963 0.91319314 276.90916828
-0.25449227 -0.96461219 0.06897091 254.76273967
Axis -0.93995663 -0.07366056 0.33325014
Axis point 0.00000000 278.30978691 22.65012111
Rotation angle (degrees) 92.71353354
Shift along axis -104.38464650
> view matrix models
> #19,0.878,-0.26036,-0.40165,186.06,0.40539,-0.04166,0.91319,269.98,-0.25449,-0.96461,0.068971,249.19
> fitmap #19 inMap #10
Fit molecule fold_pin_3_model_0.cif (#19) to map SecSegFit.mrc (#10) using
1614 atoms
average map value = 0.00933, steps = 568
shifted from previous position = 3.87
rotated from previous position = 23.5 degrees
atoms outside contour = 1069, contour level = 0.018833
Position of fold_pin_3_model_0.cif (#19) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
0.64987404 -0.51311120 -0.56069653 186.22629360
0.65522953 0.00439857 0.75541703 268.32436753
-0.38514668 -0.85831085 0.33906413 245.65581879
Axis -0.80686843 -0.08777541 0.58417362
Axis point 0.00000000 286.68901628 26.16278907
Rotation angle (degrees) 90.19088862
Shift along axis -30.30675100
Smoothing and grouping, standard deviation 7 voxels
Showing 64 region surfaces
Got 64 regions after smoothing 7 voxels.
> hide #!10 models
> select subtract #10
1614 atoms, 1802 bonds, 76 residues, 1 model selected
> hide #19 models
> select subtract #19
Nothing selected
> show #18 models
> show #!6 models
> fitmap #18 inMap #6
Fit molecule fold_pin_2_model_0.cif (#18) to map ThirdSegFit.mrc (#6) using
1718 atoms
average map value = 0.006588, steps = 60
shifted from previous position = 0.00525
rotated from previous position = 0.405 degrees
atoms outside contour = 1310, contour level = 0.018766
Position of fold_pin_2_model_0.cif (#18) relative to ThirdSegFit.mrc (#6)
coordinates:
Matrix rotation and translation
0.97309428 0.12447284 0.19389180 188.20495317
-0.05173676 -0.70198652 0.71030855 273.10213385
0.22452355 -0.70122852 -0.67665924 245.88674382
Axis -0.99206800 -0.02152886 -0.12384507
Axis point 0.00000000 180.46830008 54.70066802
Rotation angle (degrees) 134.65012831
Shift along axis -223.04354806
> ui mousemode right "rotate selected models"
> select add #18
1718 atoms, 1918 bonds, 81 residues, 1 model selected
> view matrix models
> #18,0.47158,-0.12335,0.87316,189.26,0.78925,0.50067,-0.35553,271.22,-0.39331,0.8568,0.33346,247.01
> fitmap #18 inMap #6
Fit molecule fold_pin_2_model_0.cif (#18) to map ThirdSegFit.mrc (#6) using
1718 atoms
average map value = 0.00665, steps = 156
shifted from previous position = 5.39
rotated from previous position = 13.7 degrees
atoms outside contour = 1326, contour level = 0.018766
Position of fold_pin_2_model_0.cif (#18) relative to ThirdSegFit.mrc (#6)
coordinates:
Matrix rotation and translation
0.57707565 -0.18942783 0.79441853 187.62590430
0.67328992 0.66090210 -0.33149524 267.57489368
-0.46223845 0.72617182 0.50893036 243.52731012
Axis 0.57007954 0.67733454 0.46500241
Axis point 43.35162734 0.00000000 74.97483054
Rotation angle (degrees) 68.07120394
Shift along axis 401.44019255
> hide #18 models
> show #20 models
> select subtract #18
Nothing selected
> select add #20
1609 atoms, 1794 bonds, 76 residues, 1 model selected
> view matrix models
> #20,-0.69709,0.69869,-0.16092,-7.0885,0.092014,0.30976,0.94635,-0.012058,0.71105,0.64489,-0.28022,3.924
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #20,-0.69709,0.69869,-0.16092,158.4,0.092014,0.30976,0.94635,216.41,0.71105,0.64489,-0.28022,281.99
> view matrix models
> #20,-0.69709,0.69869,-0.16092,164.01,0.092014,0.30976,0.94635,263.32,0.71105,0.64489,-0.28022,242.01
> view matrix models
> #20,-0.69709,0.69869,-0.16092,182.95,0.092014,0.30976,0.94635,267.35,0.71105,0.64489,-0.28022,250.77
> fitmap #20 inMap #6
Fit molecule fold_pin4_model_0.cif (#20) to map ThirdSegFit.mrc (#6) using
1609 atoms
average map value = 0.007782, steps = 372
shifted from previous position = 10.3
rotated from previous position = 25.4 degrees
atoms outside contour = 1156, contour level = 0.018766
Position of fold_pin4_model_0.cif (#20) relative to ThirdSegFit.mrc (#6)
coordinates:
Matrix rotation and translation
-0.67871885 0.69551469 0.23579659 186.59919208
0.47659697 0.17286230 0.86195937 265.81081981
0.55874506 0.69740801 -0.44880510 240.71976172
Axis -0.38860997 -0.76268590 -0.51700340
Axis point 23.18867867 0.00000000 32.46220316
Rotation angle (degrees) 167.77695688
Shift along axis -399.69740474
> view
> lighting soft
> transparency #6.1 50
Smoothing and grouping, standard deviation 8 voxels
Showing 38 region surfaces
Got 38 regions after smoothing 8 voxels.
> hide #20 models
> select subtract #20
2 models selected
> show #21 models
> select add #21
1487 atoms, 1659 bonds, 70 residues, 3 models selected
> hide #!6 models
> select subtract #6
1487 atoms, 1659 bonds, 70 residues, 1 model selected
> show #!9 models
> view matrix models #21,1,0,0,227.46,0,1,0,215.07,0,0,1,164.73
> ui mousemode right "rotate selected models"
> view matrix models
> #21,0.92749,-0.19829,0.31693,227.85,0.051375,-0.77211,-0.63341,212.96,0.3703,0.60376,-0.70594,164.55
> view matrix models
> #21,0.99333,-0.095984,0.063876,227.72,-0.017807,-0.67509,-0.73752,213.37,0.11391,0.73146,-0.6723,165.76
> view matrix models
> #21,0.87829,0.45055,0.16006,228.75,0.45755,-0.69483,-0.55485,211.24,-0.13878,0.56055,-0.81641,166.71
> ui mousemode right "translate selected models"
> view matrix models
> #21,0.87829,0.45055,0.16006,212.78,0.45755,-0.69483,-0.55485,245.64,-0.13878,0.56055,-0.81641,148.3
> fitmap #21 inMap #9
Fit molecule fold_5th_loop_model_0.cif (#21) to map FIVESEGFIT.mrc (#9) using
1487 atoms
average map value = 0.009202, steps = 108
shifted from previous position = 5.03
rotated from previous position = 12.7 degrees
atoms outside contour = 1001, contour level = 0.019105
Position of fold_5th_loop_model_0.cif (#21) relative to FIVESEGFIT.mrc (#9)
coordinates:
Matrix rotation and translation
0.77990459 0.61408303 0.12104074 217.41523632
0.59587619 -0.66930343 -0.44380682 243.94262175
-0.19152125 0.41825227 -0.88791027 147.72250775
Axis 0.93992789 0.34079536 -0.01985144
Axis point 0.00000000 62.74674720 95.13976337
Rotation angle (degrees) 152.70466228
Shift along axis 284.55665340
> view
> view matrix models
> #21,0.7799,0.61408,0.12104,223.68,0.59588,-0.6693,-0.44381,246.25,-0.19152,0.41825,-0.88791,145.35
> fitmap #21 inMap #9
Fit molecule fold_5th_loop_model_0.cif (#21) to map FIVESEGFIT.mrc (#9) using
1487 atoms
average map value = 0.01059, steps = 136
shifted from previous position = 2.89
rotated from previous position = 17.9 degrees
atoms outside contour = 955, contour level = 0.019105
Position of fold_5th_loop_model_0.cif (#21) relative to FIVESEGFIT.mrc (#9)
coordinates:
Matrix rotation and translation
0.60975633 0.70836943 0.35554179 222.25328137
0.79133043 -0.51883007 -0.32343703 245.18069646
-0.04464713 0.47856882 -0.87691420 147.42520088
Axis 0.89098173 0.44458656 0.09216483
Axis point 0.00000000 51.41247722 75.91192722
Rotation angle (degrees) 153.25191291
Shift along axis 320.61507327
> view matrix models
> #21,0.60976,0.70837,0.35554,220.55,0.79133,-0.51883,-0.32344,248.23,-0.044647,0.47857,-0.87691,153.23
> ui mousemode right "rotate selected models"
> view matrix models
> #21,0.86342,0.40302,0.30345,219.21,0.50395,-0.7167,-0.48205,249.26,0.023207,0.56914,-0.82191,153.05
> ui mousemode right "translate selected models"
> view matrix models
> #21,0.86342,0.40302,0.30345,225.89,0.50395,-0.7167,-0.48205,247.99,0.023207,0.56914,-0.82191,147.04
> fitmap #21 inMap #9
Fit molecule fold_5th_loop_model_0.cif (#21) to map FIVESEGFIT.mrc (#9) using
1487 atoms
average map value = 0.01059, steps = 132
shifted from previous position = 4.94
rotated from previous position = 23.2 degrees
atoms outside contour = 959, contour level = 0.019105
Position of fold_5th_loop_model_0.cif (#21) relative to FIVESEGFIT.mrc (#9)
coordinates:
Matrix rotation and translation
0.61009234 0.70827852 0.35514626 222.26363551
0.79106430 -0.51917276 -0.32353811 245.19156213
-0.04477283 0.47833165 -0.87703718 147.41349858
Axis 0.89108529 0.44441383 0.09199647
Axis point 0.00000000 51.44415378 75.93258149
Rotation angle (degrees) 153.26016768
Shift along axis 320.58389978
> fitmap #21 inMap #9
Fit molecule fold_5th_loop_model_0.cif (#21) to map FIVESEGFIT.mrc (#9) using
1487 atoms
average map value = 0.01059, steps = 48
shifted from previous position = 0.026
rotated from previous position = 0.0394 degrees
atoms outside contour = 955, contour level = 0.019105
Position of fold_5th_loop_model_0.cif (#21) relative to FIVESEGFIT.mrc (#9)
coordinates:
Matrix rotation and translation
0.60965200 0.70840027 0.35565923 222.25039847
0.79141487 -0.51874614 -0.32336501 245.17744999
-0.04457501 0.47861414 -0.87689314 147.43046281
Axis 0.89095078 0.44463626 0.09222425
Axis point 0.00000000 51.40484590 75.90421062
Rotation angle (degrees) 153.25187103
Shift along axis 320.62561265
> view matrix models
> #21,0.60965,0.7084,0.35566,221.55,0.79141,-0.51875,-0.32337,242.94,-0.044575,0.47861,-0.87689,145.92
> view matrix models
> #21,0.60965,0.7084,0.35566,221.83,0.79141,-0.51875,-0.32337,246.08,-0.044575,0.47861,-0.87689,149.77
> ui mousemode right "rotate selected models"
> view matrix models
> #21,0.45576,0.88942,-0.034982,222.61,0.88984,-0.4543,0.042519,245.84,0.021925,-0.050506,-0.99848,148.91
> view matrix models
> #21,0.49928,0.84025,0.2114,222.37,0.8548,-0.43783,-0.27861,245.97,-0.14155,0.31981,-0.93685,150.05
> view matrix models
> #21,0.837,0.32507,0.44018,220.48,0.54717,-0.48754,-0.68038,247.25,-0.0065609,0.81033,-0.58594,149.9
> view matrix models
> #21,0.80091,0.44088,0.40518,220.78,0.59737,-0.54181,-0.59126,246.93,-0.041146,0.71559,-0.69731,150.01
> fitmap #21 inMap #9
Fit molecule fold_5th_loop_model_0.cif (#21) to map FIVESEGFIT.mrc (#9) using
1487 atoms
average map value = 0.01059, steps = 116
shifted from previous position = 3.46
rotated from previous position = 22.7 degrees
atoms outside contour = 959, contour level = 0.019105
Position of fold_5th_loop_model_0.cif (#21) relative to FIVESEGFIT.mrc (#9)
coordinates:
Matrix rotation and translation
0.61003229 0.70830594 0.35519474 222.26483039
0.79111154 -0.51911802 -0.32351044 245.19486489
-0.04475638 0.47835047 -0.87702776 147.41491474
Axis 0.89106736 0.44444539 0.09201767
Axis point 0.00000000 51.44081522 75.92929412
Rotation angle (degrees) 153.25990591
Shift along axis 320.59343969
> fitmap #21 inMap #9
Fit molecule fold_5th_loop_model_0.cif (#21) to map FIVESEGFIT.mrc (#9) using
1487 atoms
average map value = 0.0106, steps = 48
shifted from previous position = 0.00649
rotated from previous position = 0.00816 degrees
atoms outside contour = 959, contour level = 0.019105
Position of fold_5th_loop_model_0.cif (#21) relative to FIVESEGFIT.mrc (#9)
coordinates:
Matrix rotation and translation
0.61008227 0.70829771 0.35512530 222.26793647
0.79107618 -0.51921923 -0.32343447 245.20053481
-0.04470001 0.47825280 -0.87708390 147.41458052
Axis 0.89108546 0.44441084 0.09200931
Axis point 0.00000000 51.45248199 75.92858859
Rotation angle (degrees) 153.26674248
Shift along axis 320.59301564
> ui mousemode right "translate selected models"
> view matrix models
> #21,0.61008,0.7083,0.35513,199.19,0.79108,-0.51922,-0.32343,256.46,-0.0447,0.47825,-0.87708,158.8
> ui mousemode right "rotate selected models"
> view matrix models
> #21,0.81959,0.56973,0.060662,198.23,0.57066,-0.80226,-0.17527,257.13,-0.05119,0.17827,-0.98265,158.64
> ui mousemode right "translate selected models"
> view matrix models
> #21,0.81959,0.56973,0.060662,207.47,0.57066,-0.80226,-0.17527,255.87,-0.05119,0.17827,-0.98265,141.85
> view matrix models
> #21,0.81959,0.56973,0.060662,215.22,0.57066,-0.80226,-0.17527,248.31,-0.05119,0.17827,-0.98265,145.08
> ui mousemode right "rotate selected models"
> view matrix models
> #21,0.73077,0.65,-0.20851,215.69,0.66307,-0.7485,-0.0094915,248.02,-0.16224,-0.13132,-0.97797,145.14
> view matrix models
> #21,0.73533,0.60748,-0.30044,215.66,0.6205,-0.78175,-0.061986,248.18,-0.27252,-0.14084,-0.95179,145.53
> view matrix models
> #21,0.65878,0.68881,-0.30257,216.05,0.7067,-0.70451,-0.065141,247.89,-0.25803,-0.17091,-0.9509,145.46
> view matrix models
> #21,0.76109,0.58986,-0.26985,215.53,0.59562,-0.80027,-0.069391,248.23,-0.25688,-0.10791,-0.9604,145.52
> view matrix models
> #21,0.43722,0.74382,0.50554,216.93,0.89043,-0.27902,-0.35956,247.77,-0.12639,0.60736,-0.78431,145.88
> fitmap #21 inMap #9
Fit molecule fold_5th_loop_model_0.cif (#21) to map FIVESEGFIT.mrc (#9) using
1487 atoms
average map value = 0.01059, steps = 108
shifted from previous position = 6.15
rotated from previous position = 16 degrees
atoms outside contour = 955, contour level = 0.019105
Position of fold_5th_loop_model_0.cif (#21) relative to FIVESEGFIT.mrc (#9)
coordinates:
Matrix rotation and translation
0.60978814 0.70835002 0.35552590 222.25215347
0.79130574 -0.51885788 -0.32345282 245.17764935
-0.04465040 0.47856738 -0.87691482 147.42342598
Axis 0.89099105 0.44456923 0.09215827
Axis point 0.00000000 51.41389726 75.91267836
Rotation angle (degrees) 153.25169813
Shift along axis 320.60940640
> ui mousemode right "translate selected models"
> transparency #9.1 50
> view matrix models
> #21,0.60979,0.70835,0.35553,223.18,0.79131,-0.51886,-0.32345,239.85,-0.04465,0.47857,-0.87691,143.3
> fitmap #21 inMap #9
Fit molecule fold_5th_loop_model_0.cif (#21) to map FIVESEGFIT.mrc (#9) using
1487 atoms
average map value = 0.01059, steps = 76
shifted from previous position = 6.81
rotated from previous position = 0.0102 degrees
atoms outside contour = 958, contour level = 0.019105
Position of fold_5th_loop_model_0.cif (#21) relative to FIVESEGFIT.mrc (#9)
coordinates:
Matrix rotation and translation
0.60967329 0.70845919 0.35550535 222.25436249
0.79139521 -0.51879653 -0.32333229 245.17997321
-0.04463279 0.47847230 -0.87696760 147.43786627
Axis 0.89096025 0.44463100 0.09215800
Axis point 0.00000000 51.40668533 75.91322316
Rotation angle (degrees) 153.25846327
Shift along axis 320.62199900
Smoothing and grouping, standard deviation 9 voxels
Showing 28 region surfaces
Got 28 regions after smoothing 9 voxels.
> show #20 models
> select subtract #21
2 models selected
> show #19 models
> show #18 models
> show #17 models
> show #16 models
> show #15 models
> show #14 models
> show #13 models
> show #12 models
> show #!11 models
> show #!10 models
> show #!8 models
> show #!7 models
> show #!6 models
> show #!5 models
> hide #15 models
> show #15 models
> hide #20 models
> show #20 models
> hide #19 models
> show #19 models
> hide #18 models
> show #18 models
> hide #!7 models
> show #!7 models
> hide #!8 models
> hide #!9 models
> select subtract #9
Nothing selected
> hide #!10 models
> hide #!11 models
> hide #12 models
> hide #!7 models
> hide #!6 models
> hide #!5 models
> show #!7 models
> hide #13 models
> hide #14 models
> hide #15 models
> hide #16 models
> hide #17 models
> hide #19 models
> hide #21 models
> select add #20
1609 atoms, 1794 bonds, 76 residues, 1 model selected
> view matrix models
> #20,-0.67872,0.69551,0.2358,198.22,0.4766,0.17286,0.86196,245.9,0.55875,0.69741,-0.44881,266.81
> ui mousemode right "rotate selected models"
> view matrix models
> #20,0.96319,-0.26035,0.066957,205.46,-0.26835,-0.94597,0.18202,246.03,0.01595,-0.19329,-0.98101,267.04
> view matrix models
> #20,0.84849,-0.14199,-0.5098,205.72,-0.23262,-0.96535,-0.1183,246.68,-0.47534,0.21896,-0.85212,264.1
> ui mousemode right "translate selected models"
> view matrix models
> #20,0.84849,-0.14199,-0.5098,199.98,-0.23262,-0.96535,-0.1183,217.23,-0.47534,0.21896,-0.85212,280.16
> view matrix models
> #20,0.84849,-0.14199,-0.5098,172.48,-0.23262,-0.96535,-0.1183,204.14,-0.47534,0.21896,-0.85212,240.29
> view matrix models
> #20,0.84849,-0.14199,-0.5098,163.97,-0.23262,-0.96535,-0.1183,214.15,-0.47534,0.21896,-0.85212,237.87
> view matrix models
> #20,0.84849,-0.14199,-0.5098,167.19,-0.23262,-0.96535,-0.1183,214.58,-0.47534,0.21896,-0.85212,242.3
> view matrix models
> #20,0.84849,-0.14199,-0.5098,160.26,-0.23262,-0.96535,-0.1183,208.65,-0.47534,0.21896,-0.85212,243.88
> fitmap #20 inMap #7
Fit molecule fold_pin4_model_0.cif (#20) to map FOURSEGFIT.mrc (#7) using 1609
atoms
average map value = 0.01156, steps = 216
shifted from previous position = 11.8
rotated from previous position = 24.5 degrees
atoms outside contour = 986, contour level = 0.018912
Position of fold_pin4_model_0.cif (#20) relative to FOURSEGFIT.mrc (#7)
coordinates:
Matrix rotation and translation
0.82034045 0.26997629 -0.50413723 170.37307867
0.05305803 -0.91367925 -0.40295790 203.09977515
-0.56940881 0.30381414 -0.76385246 241.01997271
Axis 0.95228376 0.08794499 -0.29226925
Axis point 0.00000000 66.09472630 166.19951979
Rotation angle (degrees) 158.21694690
Shift along axis 109.66239875
> hide #18 models
Smoothing and grouping, standard deviation 10 voxels
Showing 20 region surfaces
Got 20 regions after smoothing 10 voxels.
> hide #20 models
> select subtract #20
2 models selected
> show #21 models
> show #18 models
> hide #18 models
> show #19 models
> hide #19 models
> show #17 models
> hide #17 models
> hide #!7 models
> select subtract #7
Nothing selected
> show #!5 models
> show #!4 models
> hide #21 models
> show #19 models
> show #20 models
> hide #20 models
> show #18 models
> hide #18 models
> show #!6 models
> hide #!4 models
> hide #!5 models
Smoothing and grouping, standard deviation 11 voxels
Showing 16 region surfaces
Got 16 regions after smoothing 11 voxels.
> show #18 models
> hide #19 models
> show #!10 models
> hide #!6 models
> select subtract #6
Nothing selected
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> open /Users/ndeese/Downloads/fold_630_706/fold_630_706_model_0.cif
Chain information for fold_630_706_model_0.cif #22
---
Chain | Description
A | .
Computing secondary structure
> hide #18 models
> hide #!10 models
> show #!3 models
> show #!4 models
> hide #!3 models
> show #!5 models
> view
> select add #22
1623 atoms, 1815 bonds, 76 residues, 1 model selected
> view matrix models #22,1,0,0,40.717,0,1,0,239.07,0,0,1,94.543
> view matrix models #22,1,0,0,176.28,0,1,0,249.8,0,0,1,206.94
> view matrix models #22,1,0,0,163.04,0,1,0,248.65,0,0,1,198.35
> view
> transparency #5#4.1 0
> transparency #5#4.1 50
> view matrix models #22,1,0,0,227.6,0,1,0,227.65,0,0,1,245.99
> view matrix models #22,1,0,0,252.38,0,1,0,233.66,0,0,1,273.11
> view matrix models #22,1,0,0,203.77,0,1,0,235.9,0,0,1,307.59
> view matrix models #22,1,0,0,260.21,0,1,0,265.88,0,0,1,292.61
> ui mousemode right "rotate selected models"
> view matrix models
> #22,0.31499,-0.80961,-0.49529,260.39,0.94591,0.22509,0.23364,260.2,-0.077668,-0.54209,0.83672,291.33
> view matrix models
> #22,-0.33573,-0.59962,0.72646,262.4,0.63613,0.42447,0.64434,261.56,-0.69471,0.67845,0.23893,297.41
> ui mousemode right "translate selected models"
> view matrix models
> #22,-0.33573,-0.59962,0.72646,263.85,0.63613,0.42447,0.64434,264.13,-0.69471,0.67845,0.23893,292.4
> fitmap #22 inMap #4
Fit molecule fold_630_706_model_0.cif (#22) to map volume difference (#4)
using 1623 atoms
average map value = 0.01452, steps = 172
shifted from previous position = 5.65
rotated from previous position = 10.1 degrees
atoms outside contour = 1117, contour level = 0.0183
Position of fold_630_706_model_0.cif (#22) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
-0.28402209 -0.65968197 0.69580971 259.74380767
0.73625494 0.31482545 0.59901052 267.62443873
-0.61421504 0.68242556 0.39627672 290.76026042
Axis 0.04353184 0.68366319 0.72849820
Axis point 126.29854805 121.11262949 0.00000000
Rotation angle (degrees) 106.64613715
Shift along axis 406.09042908
> view matrix models
> #22,-0.28402,-0.65968,0.69581,258.55,0.73625,0.31483,0.59901,269.85,-0.61422,0.68243,0.39628,290.1
> fitmap #22 inMap #4
Fit molecule fold_630_706_model_0.cif (#22) to map volume difference (#4)
using 1623 atoms
average map value = 0.01466, steps = 72
shifted from previous position = 1.05
rotated from previous position = 2.61 degrees
atoms outside contour = 1105, contour level = 0.0183
Position of fold_630_706_model_0.cif (#22) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
-0.30761648 -0.68138004 0.66414858 258.74696355
0.71920761 0.29049622 0.63115161 269.21052212
-0.62298677 0.67181335 0.40069228 290.91468576
Axis 0.02137129 0.67650177 0.73613084
Axis point 126.43949025 124.49082931 0.00000000
Rotation angle (degrees) 107.95162999
Shift along axis 401.80242447
> view matrix models
> #22,-0.30762,-0.68138,0.66415,228.84,0.71921,0.2905,0.63115,279.4,-0.62299,0.67181,0.40069,308.22
> view matrix models
> #22,-0.30762,-0.68138,0.66415,248.15,0.71921,0.2905,0.63115,267.86,-0.62299,0.67181,0.40069,282.61
> view matrix models
> #22,-0.30762,-0.68138,0.66415,203.65,0.71921,0.2905,0.63115,191.52,-0.62299,0.67181,0.40069,281.86
> ui mousemode right "rotate selected models"
> view matrix models
> #22,-0.81816,0.57388,0.035647,209.29,0.089703,0.066159,0.99377,193.01,0.56795,0.81626,-0.10561,278.54
> ui mousemode right "translate selected models"
> view matrix models
> #22,-0.81816,0.57388,0.035647,218.79,0.089703,0.066159,0.99377,176.7,0.56795,0.81626,-0.10561,267.51
> view matrix models
> #22,-0.81816,0.57388,0.035647,204.96,0.089703,0.066159,0.99377,175.49,0.56795,0.81626,-0.10561,273.22
> fitmap #22 inMap #4
Fit molecule fold_630_706_model_0.cif (#22) to map volume difference (#4)
using 1623 atoms
average map value = 0.01844, steps = 156
shifted from previous position = 15.6
rotated from previous position = 17.5 degrees
atoms outside contour = 730, contour level = 0.0183
Position of fold_630_706_model_0.cif (#22) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
-0.92729724 0.36943219 -0.06032984 220.33050657
-0.07948444 -0.03683441 0.99615533 173.52413825
0.36578964 0.92852737 0.06352056 272.69659842
Axis -0.10861530 -0.68437807 -0.72099193
Axis point 83.12844220 -62.97280221 0.00000000
Rotation angle (degrees) 161.86127669
Shift along axis -339.29942748
> select add #5.4
1623 atoms, 1815 bonds, 76 residues, 2 models selected
> show #!6 models
> show #!7 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> hide #!7 models
> hide #!6 models
> select add #5
1623 atoms, 1815 bonds, 76 residues, 18 models selected
> select subtract #5
1623 atoms, 1815 bonds, 76 residues, 1 model selected
> view matrix models
> #22,-0.9273,0.36943,-0.06033,230.84,-0.079484,-0.036834,0.99616,208.06,0.36579,0.92853,0.063521,284.25
> view matrix models
> #22,-0.9273,0.36943,-0.06033,250.69,-0.079484,-0.036834,0.99616,233.42,0.36579,0.92853,0.063521,182.44
> view matrix models
> #22,-0.9273,0.36943,-0.06033,188.61,-0.079484,-0.036834,0.99616,259.94,0.36579,0.92853,0.063521,217.69
> view matrix models
> #22,-0.9273,0.36943,-0.06033,204.01,-0.079484,-0.036834,0.99616,267.16,0.36579,0.92853,0.063521,201.62
> view matrix models
> #22,-0.9273,0.36943,-0.06033,238.29,-0.079484,-0.036834,0.99616,265.69,0.36579,0.92853,0.063521,204.96
> ui mousemode right "rotate selected models"
> view matrix models
> #22,-0.58595,0.13786,-0.79854,237.07,-0.44075,-0.88114,0.17128,265.01,-0.68001,0.45232,0.57706,206.56
> ui mousemode right "translate selected models"
> view matrix models
> #22,-0.58595,0.13786,-0.79854,238.21,-0.44075,-0.88114,0.17128,285.44,-0.68001,0.45232,0.57706,221.97
> ui mousemode right "rotate selected models"
> view matrix models
> #22,-0.37551,0.91282,0.1605,239.21,0.81754,0.24465,0.52132,284.39,0.43661,0.32698,-0.83813,218.88
> fitmap #22 inMap #4
Fit molecule fold_630_706_model_0.cif (#22) to map volume difference (#4)
using 1623 atoms
average map value = 0.01489, steps = 628
shifted from previous position = 4.32
rotated from previous position = 47.4 degrees
atoms outside contour = 1130, contour level = 0.0183
Position of fold_630_706_model_0.cif (#22) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
-0.15647303 0.71720525 0.67906761 240.43989340
0.95843122 0.27634383 -0.07101886 287.98573941
-0.23859125 0.63972707 -0.73063226 221.08180574
Axis 0.59952468 0.77405879 0.20347767
Axis point 37.80028488 0.00000000 74.08821587
Rotation angle (degrees) 143.64704023
Shift along axis 412.05275055
> hide #!5 models
> show #!5 models
> view matrix models
> #22,-0.001353,0.51285,0.85848,239.23,0.9825,0.1606,-0.094392,287.6,-0.18628,0.84333,-0.50409,221.34
> ui mousemode right "translate selected models"
> view matrix models
> #22,-0.001353,0.51285,0.85848,279.53,0.9825,0.1606,-0.094392,216.96,-0.18628,0.84333,-0.50409,227.21
> view matrix models
> #22,-0.001353,0.51285,0.85848,319.85,0.9825,0.1606,-0.094392,189.43,-0.18628,0.84333,-0.50409,184.74
> view matrix models
> #22,-0.001353,0.51285,0.85848,320.55,0.9825,0.1606,-0.094392,215.17,-0.18628,0.84333,-0.50409,164.09
> view matrix models
> #22,-0.001353,0.51285,0.85848,319.25,0.9825,0.1606,-0.094392,221.62,-0.18628,0.84333,-0.50409,159.64
> view matrix models
> #22,-0.001353,0.51285,0.85848,297.94,0.9825,0.1606,-0.094392,209,-0.18628,0.84333,-0.50409,164.22
> view matrix models
> #22,-0.001353,0.51285,0.85848,187,0.9825,0.1606,-0.094392,193,-0.18628,0.84333,-0.50409,180
> view matrix models
> #22,-0.001353,0.51285,0.85848,203.9,0.9825,0.1606,-0.094392,172.33,-0.18628,0.84333,-0.50409,159.65
> ui mousemode right "rotate selected models"
> view matrix models
> #22,-0.94256,0.079931,0.32433,206.15,0.27132,-0.38316,0.88294,172.51,0.19484,0.92022,0.33946,157.99
> view matrix models
> #22,-0.9956,-0.06553,0.067028,206.04,0.093618,-0.65891,0.74637,172.43,-0.0047441,0.74936,0.66214,158.03
> ui mousemode right "translate selected models"
> view matrix models
> #22,-0.9956,-0.06553,0.067028,197.61,0.093618,-0.65891,0.74637,158.57,-0.0047441,0.74936,0.66214,164.55
> fitmap #22 inMap #4
Fit molecule fold_630_706_model_0.cif (#22) to map volume difference (#4)
using 1623 atoms
average map value = 0.01852, steps = 488
shifted from previous position = 11.4
rotated from previous position = 26 degrees
atoms outside contour = 760, contour level = 0.0183
Position of fold_630_706_model_0.cif (#22) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
-0.99039388 -0.12708075 -0.05450174 189.56791388
-0.01507985 -0.29253858 0.95613481 163.99818980
-0.13745019 0.94777195 0.28781207 158.54051763
Axis -0.05989604 0.59408868 0.80216651
Axis point 99.89018329 27.69887054 0.00000000
Rotation angle (degrees) 175.99683924
Shift along axis 213.25099496
> view matrix models
> #22,-0.99039,-0.12708,-0.054502,196.41,-0.01508,-0.29254,0.95613,139.67,-0.13745,0.94777,0.28781,175.37
> view matrix models
> #22,-0.99039,-0.12708,-0.054502,179.83,-0.01508,-0.29254,0.95613,159.73,-0.13745,0.94777,0.28781,161.32
> view matrix models
> #22,-0.99039,-0.12708,-0.054502,197.93,-0.01508,-0.29254,0.95613,146.19,-0.13745,0.94777,0.28781,170.8
> ui mousemode right "rotate selected models"
> view matrix models
> #22,0.11775,-0.53912,-0.83396,193.36,-0.97611,0.091593,-0.19703,151.24,0.18261,0.83724,-0.51545,169.75
> view matrix models
> #22,0.39466,-0.07719,-0.91558,193.8,-0.91138,-0.15949,-0.3794,150.43,-0.11674,0.98418,-0.13329,170.92
> view matrix models
> #22,-0.56076,0.36723,-0.74208,198.48,-0.82756,-0.22021,0.51638,149.39,0.026217,0.90369,0.42739,169.81
> ui mousemode right "translate selected models"
> view matrix models
> #22,-0.56076,0.36723,-0.74208,203.36,-0.82756,-0.22021,0.51638,139.14,0.026217,0.90369,0.42739,185.05
> view matrix models
> #22,-0.56076,0.36723,-0.74208,200.58,-0.82756,-0.22021,0.51638,141.86,0.026217,0.90369,0.42739,178.63
> view matrix models
> #22,-0.56076,0.36723,-0.74208,198.83,-0.82756,-0.22021,0.51638,140.13,0.026217,0.90369,0.42739,162.03
> ui mousemode right "rotate selected models"
> view matrix models
> #22,-0.6117,0.53855,-0.57947,199.44,-0.65021,0.074971,0.75605,140.32,0.45061,0.83925,0.30431,160.48
> fitmap #22 inMap #4
Fit molecule fold_630_706_model_0.cif (#22) to map volume difference (#4)
using 1623 atoms
average map value = 0.01575, steps = 616
shifted from previous position = 16.2
rotated from previous position = 64.4 degrees
atoms outside contour = 1026, contour level = 0.0183
Position of fold_630_706_model_0.cif (#22) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
0.14928984 -0.08644869 -0.98500719 202.14415768
-0.92044682 0.35177942 -0.17037868 149.55103483
0.36123427 0.93208254 -0.02705432 173.60769289
Axis 0.57134311 -0.69768057 -0.43221392
Axis point 82.37993263 0.00000000 171.12625386
Rotation angle (degrees) 105.24770278
Shift along axis -63.88084121
> ui mousemode right "translate selected models"
> view matrix models
> #22,0.14929,-0.086449,-0.98501,215.63,-0.92045,0.35178,-0.17038,130.67,0.36123,0.93208,-0.027054,191.34
> ui mousemode right "rotate selected models"
> view matrix models
> #22,-0.74475,0.41906,-0.51935,220.11,-0.64111,-0.23325,0.73115,127.5,0.18526,0.87749,0.44238,191.58
> ui mousemode right "translate selected models"
> view matrix models
> #22,-0.74475,0.41906,-0.51935,208.72,-0.64111,-0.23325,0.73115,142.87,0.18526,0.87749,0.44238,177.61
> view matrix models
> #22,-0.74475,0.41906,-0.51935,206.15,-0.64111,-0.23325,0.73115,141.51,0.18526,0.87749,0.44238,183.34
> view matrix models
> #22,-0.74475,0.41906,-0.51935,202.96,-0.64111,-0.23325,0.73115,141.55,0.18526,0.87749,0.44238,172.96
> view matrix models
> #22,-0.74475,0.41906,-0.51935,200.5,-0.64111,-0.23325,0.73115,132.17,0.18526,0.87749,0.44238,174.71
> fitmap #22 inMap #4
Fit molecule fold_630_706_model_0.cif (#22) to map volume difference (#4)
using 1623 atoms
average map value = 0.01575, steps = 964
shifted from previous position = 17.3
rotated from previous position = 72 degrees
atoms outside contour = 1027, contour level = 0.0183
Position of fold_630_706_model_0.cif (#22) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
0.14983934 -0.08711057 -0.98486543 202.14352598
-0.92029056 0.35182202 -0.17113317 149.55449699
0.36140485 0.93200484 -0.02745025 173.60696106
Axis 0.57167801 -0.69767618 -0.43177796
Axis point 82.36007094 0.00000000 171.15289252
Rotation angle (degrees) 105.24187788
Shift along axis -63.73926079
> view matrix models
> #22,0.14984,-0.087111,-0.98487,231.62,-0.92029,0.35182,-0.17113,203.4,0.3614,0.932,-0.02745,150.92
> view matrix models
> #22,0.14984,-0.087111,-0.98487,228.46,-0.92029,0.35182,-0.17113,236.05,0.3614,0.932,-0.02745,124.59
> view matrix models
> #22,0.14984,-0.087111,-0.98487,251.18,-0.92029,0.35182,-0.17113,286.95,0.3614,0.932,-0.02745,145.44
> view matrix models
> #22,0.14984,-0.087111,-0.98487,261.98,-0.92029,0.35182,-0.17113,303.04,0.3614,0.932,-0.02745,155.1
> view matrix models
> #22,0.14984,-0.087111,-0.98487,170.17,-0.92029,0.35182,-0.17113,287.58,0.3614,0.932,-0.02745,263.67
> ui mousemode right "rotate selected models"
> view matrix models
> #22,-0.78199,0.011006,-0.62319,173.41,0.25408,0.91863,-0.30259,285.29,0.56915,-0.39496,-0.72116,259.47
> ui mousemode right "translate selected models"
> view matrix models
> #22,-0.78199,0.011006,-0.62319,132.88,0.25408,0.91863,-0.30259,237.73,0.56915,-0.39496,-0.72116,276.09
> ui mousemode right "rotate selected models"
> view matrix models
> #22,-0.74691,0.1741,-0.64172,133.27,0.21844,0.97579,0.010488,237.8,0.62802,-0.13234,-0.76686,276.73
> view matrix models
> #22,-0.71902,0.34336,-0.60425,133.67,0.15999,0.92786,0.33687,237.7,0.67633,0.14554,-0.72208,277.38
> view matrix models
> #22,-0.8603,-0.037255,-0.50842,132.97,-0.25192,0.89811,0.36046,238.97,0.44319,0.43819,-0.78203,279.03
> ui mousemode right "translate selected models"
> view matrix models
> #22,-0.8603,-0.037255,-0.50842,127.48,-0.25192,0.89811,0.36046,227.89,0.44319,0.43819,-0.78203,270.66
> view matrix models
> #22,-0.8603,-0.037255,-0.50842,141.33,-0.25192,0.89811,0.36046,241.34,0.44319,0.43819,-0.78203,268.9
> view matrix models
> #22,-0.8603,-0.037255,-0.50842,164.09,-0.25192,0.89811,0.36046,233.94,0.44319,0.43819,-0.78203,257.54
> view matrix models
> #22,-0.8603,-0.037255,-0.50842,159.89,-0.25192,0.89811,0.36046,226.23,0.44319,0.43819,-0.78203,256.87
> fitmap #22 inMap #4
Fit molecule fold_630_706_model_0.cif (#22) to map volume difference (#4)
using 1623 atoms
average map value = 0.01591, steps = 120
shifted from previous position = 11.7
rotated from previous position = 21.4 degrees
atoms outside contour = 938, contour level = 0.0183
Position of fold_630_706_model_0.cif (#22) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
-0.86155155 0.29212301 -0.41520244 158.64677603
0.11419252 0.90841222 0.40217820 215.07001490
0.49466048 0.29908424 -0.81600222 253.24917993
Axis -0.11051955 -0.97539800 -0.19074636
Axis point 41.68027518 0.00000000 121.85749537
Rotation angle (degrees) 152.19874718
Shift along axis -275.61879235
> view matrix models
> #22,-0.86155,0.29212,-0.4152,156.31,0.11419,0.90841,0.40218,219.16,0.49466,0.29908,-0.816,255.85
> fitmap #22 inMap #4
Fit molecule fold_630_706_model_0.cif (#22) to map volume difference (#4)
using 1623 atoms
average map value = 0.0159, steps = 84
shifted from previous position = 5.27
rotated from previous position = 0.701 degrees
atoms outside contour = 934, contour level = 0.0183
Position of fold_630_706_model_0.cif (#22) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
-0.85815852 0.28977260 -0.42378743 158.59453546
0.11356548 0.91217538 0.39374987 215.15222201
0.50066639 0.28977219 -0.81569924 253.29520637
Axis -0.10981737 -0.97637373 -0.18610341
Axis point 41.13653465 0.00000000 122.69781485
Rotation angle (degrees) 151.74400289
Shift along axis -274.62451356
> view matrix models
> #22,-0.85816,0.28977,-0.42379,253.3,0.11357,0.91218,0.39375,195.46,0.50067,0.28977,-0.8157,256.35
> view matrix models
> #22,-0.85816,0.28977,-0.42379,227.75,0.11357,0.91218,0.39375,186.2,0.50067,0.28977,-0.8157,200.69
> view matrix models
> #22,-0.85816,0.28977,-0.42379,274.14,0.11357,0.91218,0.39375,182.14,0.50067,0.28977,-0.8157,211.47
> ui mousemode right "rotate selected models"
> view matrix models
> #22,0.80551,0.2551,-0.53487,268.51,-0.36136,0.92681,-0.10217,183.77,0.46966,0.27557,0.83874,210.27
> view matrix models
> #22,0.91136,-0.12107,-0.39341,266.99,-0.17911,0.7439,-0.64384,182.8,0.37061,0.65723,0.65627,211.79
> ui mousemode right "translate selected models"
> view matrix models
> #22,0.91136,-0.12107,-0.39341,249.24,-0.17911,0.7439,-0.64384,153.32,0.37061,0.65723,0.65627,210.69
> ui mousemode right "rotate selected models"
> view matrix models
> #22,0.96388,-0.246,-0.10209,248.56,0.060677,0.57605,-0.81516,152.04,0.25934,0.77952,0.57017,211.49
> view matrix models
> #22,0.56658,0.71846,-0.40349,252.85,-0.74046,0.65876,0.13325,154.52,0.36154,0.22327,0.90523,209.31
> fitmap #22 inMap #4
Fit molecule fold_630_706_model_0.cif (#22) to map volume difference (#4)
using 1623 atoms
average map value = 0.0174, steps = 740
shifted from previous position = 18
rotated from previous position = 21.9 degrees
atoms outside contour = 850, contour level = 0.0183
Position of fold_630_706_model_0.cif (#22) relative to volume difference (#4)
coordinates:
Matrix rotation and translation
0.58626906 0.63864992 -0.49841235 253.26303122
-0.79713398 0.56447650 -0.21434483 157.68995000
0.14445075 0.52296516 0.84002466 227.20970982
Axis 0.42438846 -0.37002575 -0.82642325
Axis point 295.77677482 -297.07627969 0.00000000
Rotation angle (degrees) 60.30485200
Shift along axis -138.63882146
> show #12 models
> show #13 models
> show #14 models
> show #15 models
> show #16 models
> show #17 models
> show #18 models
> show #19 models
> show #20 models
> show #21 models
> hide #21 models
> hide #20 models
> hide #19 models
> hide #18 models
> hide #17 models
> hide #16 models
> hide #15 models
> hide #14 models
> hide #13 models
> hide #12 models
> select add #5.4
1623 atoms, 1815 bonds, 76 residues, 2 models selected
Segmenting volume difference, density threshold 0.018300
Showing 193 region surfaces
2041 watershed regions, grouped to 193 regions
Showing volume difference.seg - 193 regions, 193 surfaces
> select add #5.90
1623 atoms, 1815 bonds, 76 residues, 2 models selected
> select add #5.163
1623 atoms, 1815 bonds, 76 residues, 3 models selected
> select add #5.22
1623 atoms, 1815 bonds, 76 residues, 4 models selected
> select add #5.178
1623 atoms, 1815 bonds, 76 residues, 5 models selected
> select add #5.136
1623 atoms, 1815 bonds, 76 residues, 6 models selected
Grouped 5 regions
> hide #22 models
> select subtract #22
1 model selected
> show #21 models
> select add #5
190 models selected
> hide #!5 models
> hide #!4 models
> show #!9 models
> show #!7 models
> show #!8 models
> show #!10 models
> show #!11 models
> show #17 models
> show #18 models
> show #19 models
> show #20 models
> show #22 models
> hide #22 models
> hide #18 models
> hide #19 models
> hide #20 models
> hide #21 models
> hide #!11 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> hide #!9 models
> hide #!10 models
> hide #17 models
> show #19 models
> show #18 models
> hide #19 models
> select add #18
1718 atoms, 1918 bonds, 81 residues, 191 models selected
> view matrix models
> #18,-0.71031,-0.24015,-0.66165,189.64,-0.58732,-0.31588,0.74517,270.24,-0.38795,0.9179,0.083335,243.26,#5,-0.89004,-0.41763,-0.18279,512.9,0.31288,-0.85122,0.42133,336.69,-0.33155,0.31781,0.88829,4.1087
> view matrix models
> #18,0.32309,-0.54641,-0.77269,187.62,-0.93748,-0.073158,-0.34026,270.54,0.12939,0.83432,-0.53588,242.08,#5,-0.32389,0.11256,-0.93938,447.04,-0.79745,-0.56675,0.20704,521.39,-0.50909,0.81616,0.27332,52.654
> ui mousemode right "translate selected models"
> view matrix models
> #18,0.32309,-0.54641,-0.77269,239.15,-0.93748,-0.073158,-0.34026,183.05,0.12939,0.83432,-0.53588,286.71,#5,-0.32389,0.11256,-0.93938,498.57,-0.79745,-0.56675,0.20704,433.9,-0.50909,0.81616,0.27332,97.278
> view
> view matrix models
> #18,0.32309,-0.54641,-0.77269,221.84,-0.93748,-0.073158,-0.34026,167.64,0.12939,0.83432,-0.53588,279,#5,-0.32389,0.11256,-0.93938,481.25,-0.79745,-0.56675,0.20704,418.49,-0.50909,0.81616,0.27332,89.573
> fitmap #18 inMap #8
Fit molecule fold_pin_2_model_0.cif (#18) to map First SegFit.mrc (#8) using
1718 atoms
average map value = 0.01149, steps = 180
shifted from previous position = 9.92
rotated from previous position = 13.7 degrees
atoms outside contour = 1030, contour level = 0.019009
Position of fold_pin_2_model_0.cif (#18) relative to First SegFit.mrc (#8)
coordinates:
Matrix rotation and translation
0.35614925 -0.61428674 -0.70413742 212.94418124
-0.86485457 0.06862754 -0.49730960 171.43969710
0.35381391 0.78609291 -0.50682705 279.03661818
Axis 0.76301587 -0.62897934 -0.14896903
Axis point 0.00000000 73.00145218 224.55865063
Rotation angle (degrees) 122.75345116
Shift along axis 13.07994814
> ui mousemode right "rotate selected models"
> view matrix models
> #18,-0.71816,0.52376,-0.45818,214.93,0.46925,-0.12171,-0.87464,168.85,-0.51386,-0.84313,-0.15836,281.05,#5,-0.82158,-0.21203,0.5292,291.3,-0.55588,0.50398,-0.66106,306.81,-0.12654,-0.83728,-0.53192,660.6
> fitmap #18 inMap #8
Fit molecule fold_pin_2_model_0.cif (#18) to map First SegFit.mrc (#8) using
1718 atoms
average map value = 0.01194, steps = 244
shifted from previous position = 5.99
rotated from previous position = 11.9 degrees
atoms outside contour = 1029, contour level = 0.019009
Position of fold_pin_2_model_0.cif (#18) relative to First SegFit.mrc (#8)
coordinates:
Matrix rotation and translation
-0.73370128 0.60430633 -0.31063853 215.80488044
0.29133844 -0.13322976 -0.94729708 172.15996726
-0.61384392 -0.78553402 -0.07830681 276.07778461
Axis 0.34801865 0.65231908 -0.67332224
Axis point 194.22568521 200.97877211 0.00000000
Rotation angle (degrees) 166.56125130
Shift along axis 1.51804362
> view matrix models
> #18,-0.77725,0.60338,-0.17838,215.92,0.012288,-0.26889,-0.96309,172.68,-0.62908,-0.75075,0.20158,276.17,#5,-0.73914,-0.29377,0.60611,278.69,-0.66926,0.21891,-0.71005,417.79,0.075909,-0.93047,-0.35841,604.3
> view matrix models
> #18,-0.8581,0.46227,0.22353,216.17,-0.51257,-0.79706,-0.31933,173.81,0.030546,-0.38859,0.9209,275.16,#5,-0.4173,-0.56409,0.71251,265.26,-0.26112,-0.67654,-0.68855,579.6,0.87044,-0.47339,0.13502,207.29
> view matrix models
> #18,-0.65224,0.41528,0.63413,215.92,-0.70207,-0.01555,-0.71194,173.97,-0.28579,-0.90956,0.3017,275.64,#5,0.029701,-0.55983,0.82808,151.62,-0.92266,-0.33401,-0.19272,484.23,0.38447,-0.75831,-0.52645,542.63
> view matrix models
> #18,-0.56499,0.31488,0.76265,215.81,-0.78676,0.072865,-0.61294,174.13,-0.24857,-0.94633,0.20657,275.55,#5,0.20912,-0.57949,0.78769,133.77,-0.91676,-0.39652,-0.048325,463.57,0.34034,-0.71202,-0.61417,560.48
> view matrix models
> #18,-0.8226,0.36274,0.43789,216.17,-0.52599,-0.19284,-0.82834,173.65,-0.21603,-0.91172,0.34943,275.53,#5,-0.19702,-0.6553,0.72922,244.79,-0.86624,-0.23198,-0.44251,509.24,0.45914,-0.71887,-0.52194,516.87
> view matrix models
> #18,-0.67541,0.38159,-0.63104,215.65,0.65425,-0.084779,-0.75152,171.58,-0.34027,-0.92044,-0.19239,275.61,#5,-0.97307,-0.15658,0.16916,395.58,-0.22835,0.75491,-0.61479,165.96,-0.031432,-0.63686,-0.77034,648.81
> view matrix models
> #18,-0.63714,0.32117,-0.70064,215.57,0.692,-0.16192,-0.7035,171.54,-0.33939,-0.93308,-0.11909,275.63,#5,-0.98882,-0.1292,0.07449,415.03,-0.14585,0.73345,-0.66391,168.86,0.031142,-0.66735,-0.74409,638.8
> view matrix models
> #18,-0.74848,0.37785,-0.54499,215.8,0.53894,-0.13229,-0.83189,171.77,-0.38643,-0.91636,-0.10462,275.71,#5,-0.94162,-0.24773,0.22798,399.59,-0.33643,0.66661,-0.66516,222.81,0.012804,-0.70303,-0.71104,643.54
> fitmap #18 inMap #8
Fit molecule fold_pin_2_model_0.cif (#18) to map First SegFit.mrc (#8) using
1718 atoms
average map value = 0.01194, steps = 348
shifted from previous position = 0.626
rotated from previous position = 20.5 degrees
atoms outside contour = 1029, contour level = 0.019009
Position of fold_pin_2_model_0.cif (#18) relative to First SegFit.mrc (#8)
coordinates:
Matrix rotation and translation
-0.73475177 0.60430428 -0.30814960 215.80029343
0.28839692 -0.13288228 -0.94824550 172.15375864
-0.61397644 -0.78559445 -0.07664400 276.08132271
Axis 0.34694445 0.65234698 -0.67384936
Axis point 194.09046604 200.71531487 0.00000000
Rotation angle (degrees) 166.44344581
Shift along axis 1.13747435
> show #19 models
> hide #18 models
> select subtract #18
190 models selected
> select add #19
1614 atoms, 1802 bonds, 76 residues, 191 models selected
> view matrix models
> #19,0.64747,-0.26109,-0.71597,186,0.71964,-0.099696,0.68715,268.29,-0.25079,-0.96015,0.12334,245.48,#5,-0.86418,-0.12694,0.48691,288.73,-0.45835,0.59788,-0.65761,268.19,-0.20764,-0.79147,-0.57486,687.47
> view matrix models
> #19,0.57687,-0.78152,-0.23759,186.72,0.58194,0.18911,0.79094,268.17,-0.5732,-0.59454,0.56389,245.57,#5,-0.91696,-0.35393,-0.18418,518.26,-0.17825,0.77639,-0.60452,141.9,0.35695,-0.52149,-0.775,528.5
> view matrix models
> #19,-0.88613,-0.43987,0.14592,188.62,0.43705,-0.8979,-0.052595,269.59,0.15416,0.017171,0.9879,243.73,#5,0.57551,-0.74799,-0.33062,423.65,-0.80321,-0.44095,-0.40053,656.31,0.1538,0.49606,-0.85456,210.27
> view matrix models
> #19,-0.89495,-0.44616,0.0030637,188.6,0.44448,-0.89093,0.093126,269.62,-0.03882,0.084704,0.99565,243.88,#5,0.54019,-0.81515,-0.2091,429.58,-0.76561,-0.3729,-0.52419,650.09,0.34933,0.44325,-0.82553,188.37
> ui mousemode right "translate selected models"
> view matrix models
> #19,-0.89495,-0.44616,0.0030637,249.1,0.44448,-0.89093,0.093126,208.2,-0.03882,0.084704,0.99565,277.71,#5,0.54019,-0.81515,-0.2091,490.09,-0.76561,-0.3729,-0.52419,588.67,0.34933,0.44325,-0.82553,222.19
> view matrix models
> #19,-0.89495,-0.44616,0.0030637,226.8,0.44448,-0.89093,0.093126,177.55,-0.03882,0.084704,0.99565,283.7,#5,0.54019,-0.81515,-0.2091,467.78,-0.76561,-0.3729,-0.52419,558.01,0.34933,0.44325,-0.82553,228.19
> fitmap #19 inMap #8
Fit molecule fold_pin_3_model_0.cif (#19) to map First SegFit.mrc (#8) using
1614 atoms
average map value = 0.0133, steps = 908
shifted from previous position = 12.1
rotated from previous position = 65.9 degrees
atoms outside contour = 878, contour level = 0.019009
Position of fold_pin_3_model_0.cif (#19) relative to First SegFit.mrc (#8)
coordinates:
Matrix rotation and translation
-0.80036818 0.59939931 0.01145522 215.26926769
-0.58491489 -0.77655185 -0.23418321 174.23266581
-0.13147368 -0.19413312 0.97212498 279.75867523
Axis 0.03355460 0.11974809 -0.99223711
Axis point 146.42060358 66.68320897 0.00000000
Rotation angle (degrees) 143.35966331
Shift along axis -249.49963758
> ui mousemode right "rotate selected models"
> select subtract #5
1614 atoms, 1802 bonds, 76 residues, 1 model selected
Smoothing and grouping, standard deviation 5 voxels
Showing 142 region surfaces
Got 142 regions after smoothing 5 voxels.
> select subtract #8
1614 atoms, 1802 bonds, 76 residues, 1 model selected
> hide #!8 models
> hide #19 models
> select subtract #19
Nothing selected
> show #18 models
> show #!6 models
> show #!7 models
> show #!8 models
> show #!9 models
> show #!10 models
> show #!11 models
> show #19 models
> show #20 models
> show #21 models
> show #17 models
> hide #17 models
> show #17 models
> hide #17 models
> show #17 models
> hide #18 models
> show #18 models
> hide #19 models
> hide #20 models
> hide #21 models
> hide #17 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!11 models
> hide #!9 models
> hide #!8 models
> hide #!7 models
> hide #!6 models
> select add #18
1718 atoms, 1918 bonds, 81 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models
> #18,-0.73475,0.6043,-0.30815,257.15,0.2884,-0.13288,-0.94825,239.05,-0.61398,-0.78559,-0.076644,256.1
> view matrix models
> #18,-0.73475,0.6043,-0.30815,182.1,0.2884,-0.13288,-0.94825,251.16,-0.61398,-0.78559,-0.076644,257.77
> view matrix models
> #18,-0.73475,0.6043,-0.30815,179.66,0.2884,-0.13288,-0.94825,265.68,-0.61398,-0.78559,-0.076644,243.47
> ui mousemode right "rotate selected models"
> view matrix models
> #18,-0.51828,0.74583,-0.41848,179.22,0.35292,-0.25919,-0.89904,265.6,-0.77899,-0.61365,-0.12888,243.72
> view matrix models
> #18,-0.37744,0.14257,0.91499,179.41,-0.75251,-0.62307,-0.21332,267.79,0.53969,-0.76906,0.34246,241.42
> fitmap #18 inMap #10
Fit molecule fold_pin_2_model_0.cif (#18) to map SecSegFit.mrc (#10) using
1718 atoms
average map value = 0.008188, steps = 484
shifted from previous position = 11.8
rotated from previous position = 32.5 degrees
atoms outside contour = 1230, contour level = 0.018833
Position of fold_pin_2_model_0.cif (#18) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
0.15685125 0.09450155 0.98309061 188.71823886
-0.70475682 -0.68663976 0.17844796 261.36610533
0.69189270 -0.72082959 -0.04109970 238.80304467
Axis -0.72647454 0.23524202 -0.64567480
Axis point 0.00000000 182.81188767 -39.71925486
Rotation angle (degrees) 141.76177071
Shift along axis -229.80381297
> view matrix models
> #18,0.36798,-0.12628,-0.92122,187.91,0.42745,-0.85687,0.2882,259.32,-0.82576,-0.49982,-0.26133,241.62
> fitmap #18 inMap #10
Fit molecule fold_pin_2_model_0.cif (#18) to map SecSegFit.mrc (#10) using
1718 atoms
average map value = 0.00661, steps = 144
shifted from previous position = 11.5
rotated from previous position = 13.7 degrees
atoms outside contour = 1320, contour level = 0.018833
Position of fold_pin_2_model_0.cif (#18) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
0.43389719 -0.08474782 -0.89696769 185.54225452
0.59403221 -0.72160954 0.35553538 269.56115445
-0.67739129 -0.68709350 -0.26276142 245.94462464
Axis -0.82529473 -0.17380609 0.53728954
Axis point 0.00000000 176.11922986 127.80027035
Rotation angle (degrees) 140.82651392
Shift along axis -67.83494256
> view matrix models
> #18,0.57942,-0.047747,-0.81363,185.31,0.53704,-0.72855,0.4252,269.68,-0.61307,-0.68332,-0.3965,245.8
> view matrix models
> #18,0.9053,0.01452,-0.42452,184.83,0.28199,-0.76796,0.57509,270.17,-0.31766,-0.64034,-0.69933,245.2
> fitmap #18 inMap #10
Fit molecule fold_pin_2_model_0.cif (#18) to map SecSegFit.mrc (#10) using
1718 atoms
average map value = 0.007523, steps = 728
shifted from previous position = 8.42
rotated from previous position = 68.1 degrees
atoms outside contour = 1274, contour level = 0.018833
Position of fold_pin_2_model_0.cif (#18) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
0.74005707 0.02727508 0.67199077 188.14828795
-0.49109266 -0.66075422 0.56765470 264.65266506
0.45950357 -0.75010662 -0.47560124 239.58289169
Axis -0.92028569 0.14839481 -0.36201276
Axis point 0.00000000 184.08155537 14.66437407
Rotation angle (degrees) 134.27870141
Shift along axis -220.60915912
> ui mousemode right "translate selected models"
> view matrix models
> #18,0.74006,0.027275,0.67199,187.96,-0.49109,-0.66075,0.56765,264.13,0.4595,-0.75011,-0.4756,238.85
> fitmap #18 inMap #10
Fit molecule fold_pin_2_model_0.cif (#18) to map SecSegFit.mrc (#10) using
1718 atoms
average map value = 0.007514, steps = 100
shifted from previous position = 0.92
rotated from previous position = 0.323 degrees
atoms outside contour = 1274, contour level = 0.018833
Position of fold_pin_2_model_0.cif (#18) relative to SecSegFit.mrc (#10)
coordinates:
Matrix rotation and translation
0.73634178 0.02861284 0.67600450 188.17148275
-0.49355426 -0.66070598 0.56557211 264.65515091
0.46282283 -0.75009927 -0.47238343 239.57947690
Axis -0.91910741 0.14892537 -0.36477775
Axis point 0.00000000 184.02188864 14.23184770
Rotation angle (degrees) 134.29667969
Shift along axis -220.92919908
Smoothing and grouping, standard deviation 6 voxels
Showing 102 region surfaces
Got 102 regions after smoothing 6 voxels.
> hide #18 models
> select subtract #18
2 models selected
> show #18 models
> show #19 models
> show #20 models
> show #21 models
> show #22 models
> show #17 models
> show #16 models
> show #15 models
> show #14 models
> show #13 models
> show #12 models
> show #!11 models
> hide #!11 models
> show #!5 models
> show #!4 models
> view
> hide #!5 models
> show #!5 models
> hide #!5 models
> select subtract #10
Nothing selected
> select add #10
2 models selected
> select subtract #10
Nothing selected
> transparency #4.1#10.1 0
> show #!11 models
> show #!9 models
> show #!8 models
> show #!7 models
> show #!6 models
> show #!5 models
> hide #!5 models
> show #!3 models
> hide #!3 models
> show #2 models
> hide #2 models
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9rc202411082121 (2024-11-08)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M2 Max
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac Studio
Model Identifier: Mac14,13
Model Number: Z17Z000MJLL/A
Chip: Apple M2 Max
Total Number of Cores: 12 (8 performance and 4 efficiency)
Memory: 64 GB
System Firmware Version: 11881.41.5
OS Loader Version: 11881.41.5
Software:
System Software Overview:
System Version: macOS 15.1.1 (24B91)
Kernel Version: Darwin 24.1.0
Time since boot: 3 hours, 47 minutes
Graphics/Displays:
Apple M2 Max:
Chipset Model: Apple M2 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 38
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
DELL E2724HS:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.7.1
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.7
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.7
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9rc202411082121
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.5
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.11
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.2.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.8
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.54.1
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.12.1
html2text: 2024.2.26
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.1
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
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