Changes between Initial Version and Version 1 of Ticket #16247


Ignore:
Timestamp:
Nov 4, 2024, 1:22:02 PM (12 months ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #16247

    • Property Component Unassigned → Graphics
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Graphics hardware encountered an error and was reset

  • Ticket #16247 – Description

    initial v1  
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    2449     "size" : 241656,
    2450     "uuid" : "2442268f-a168-398b-986d-f51a5b77ced1",
    2451     "path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
    2452     "name" : "libsystem_kernel.dylib"
    2453   },
    2454   {
    2455     "source" : "P",
    2456     "arch" : "x86_64",
    2457     "base" : 140703535616000,
    2458     "size" : 49144,
    2459     "uuid" : "79ecab15-71f1-3d6a-8a96-0623e622205f",
    2460     "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
    2461     "name" : "libsystem_pthread.dylib"
    2462   },
    2463   {
    2464     "source" : "P",
    2465     "arch" : "x86_64",
    2466     "base" : 140703534780416,
    2467     "size" : 503796,
    2468     "uuid" : "acdb3afe-f896-313c-8d5b-2b2810639d29",
    2469     "path" : "\/usr\/lib\/libc++.1.dylib",
    2470     "name" : "libc++.1.dylib"
    2471   },
    2472   {
    2473     "source" : "P",
    2474     "arch" : "x86_64",
    2475     "base" : 140703534223360,
    2476     "size" : 557048,
    2477     "uuid" : "17b641ba-925c-39a9-aa43-ab3b0bcdfe01",
    2478     "path" : "\/usr\/lib\/system\/libsystem_c.dylib",
    2479     "name" : "libsystem_c.dylib"
    2480   },
    2481   {
    2482     "source" : "P",
    2483     "arch" : "x86_64",
    2484     "base" : 140703535816704,
    2485     "size" : 45048,
    2486     "uuid" : "cf0d62bf-94ea-338b-81d2-4ef8161cdf4e",
    2487     "path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
    2488     "name" : "libsystem_platform.dylib"
    2489   },
    2490   {
    2491     "source" : "P",
    2492     "arch" : "x86_64",
    2493     "base" : 140708153995264,
    2494     "size" : 45048,
    2495     "uuid" : "267a9263-b905-381d-bc24-7fbda9369148",
    2496     "path" : "\/System\/Library\/PrivateFrameworks\/GPUSupport.framework\/Versions\/A\/Libraries\/libGPUSupportMercury.dylib",
    2497     "name" : "libGPUSupportMercury.dylib"
    2498   },
    2499   {
    2500     "source" : "P",
    2501     "arch" : "x86_64",
    2502     "base" : 140712627183616,
    2503     "CFBundleShortVersionString" : "5.4",
    2504     "CFBundleIdentifier" : "com.apple.opencl",
    2505     "size" : 360448,
    2506     "uuid" : "d916cd25-7ae6-30ac-9ad5-3dfac190617d",
    2507     "path" : "\/System\/Library\/Frameworks\/OpenCL.framework\/Versions\/A\/OpenCL",
    2508     "name" : "OpenCL",
    2509     "CFBundleVersion" : "5.4"
    2510   }
     70[deleted to fit within ticket limits]
    251171],
    251272  "sharedCache" : {
    … …  
    2609169200,200,200, pixel 1.62, shown at step 1, values float32 
    2610170
    2611 > volume #2.1.1.1 style surface
    2612 
    2613 > volume #2.1.1.1 color #00ffff79
    2614 
    2615 > volume #2.1.1.1 color silver
    2616 
    2617 > volume #2.1.1.1 color #c0c0c095
    2618 
    2619 > volume #2.1.1.1 color #c0c0c096
    2620 
    2621 > volume #2.1.1.1 level 5.205
    2622 
    2623 > select clear
    2624 
    2625 > isolde sim start /D:259
    2626 
    2627 Sim termination reason: None 
    2628 ISOLDE: stopped sim 
    2629 
    2630 > addh #2.2
    2631 
    2632 Summary of feedback from adding hydrogens to 6mer_dock_ntd-coot-3.pdb #2.2 
    2633 --- 
    2634 warnings | Not adding hydrogens to /G GLU 118 CB because it is missing heavy-atom bond partners 
    2635 Not adding hydrogens to /H GLU 118 CB because it is missing heavy-atom bond
    2636 partners 
    2637 notes | No usable SEQRES records for 6mer_dock_ntd-coot-3.pdb (#2.2) chain A; guessing termini instead 
    2638 No usable SEQRES records for 6mer_dock_ntd-coot-3.pdb (#2.2) chain B; guessing
    2639 termini instead 
    2640 No usable SEQRES records for 6mer_dock_ntd-coot-3.pdb (#2.2) chain C; guessing
    2641 termini instead 
    2642 No usable SEQRES records for 6mer_dock_ntd-coot-3.pdb (#2.2) chain D; guessing
    2643 termini instead 
    2644 No usable SEQRES records for 6mer_dock_ntd-coot-3.pdb (#2.2) chain E; guessing
    2645 termini instead 
    2646 3 messages similar to the above omitted 
    2647 Chain-initial residues that are actual N termini: /A ALA 247, /B ALA 247, /C
    2648 ALA 247, /D ALA 247, /E ALA 247, /F ALA 247, /G GLU 7, /H GLU 7 
    2649 Chain-initial residues that are not actual N termini: 
    2650 Chain-final residues that are actual C termini: 
    2651 Chain-final residues that are not actual C termini: /A PRO 775, /B MET 778, /C
    2652 MET 778, /D PRO 775, /E MET 778, /F MET 778, /G ASP 245, /H ASP 245 
    2653 2390 hydrogen bonds 
    2654 /A PRO 775 is not terminus, removing H atom from 'C' 
    2655 /B MET 778 is not terminus, removing H atom from 'C' 
    2656 /C MET 778 is not terminus, removing H atom from 'C' 
    2657 /D PRO 775 is not terminus, removing H atom from 'C' 
    2658 /E MET 778 is not terminus, removing H atom from 'C' 
    2659 3 messages similar to the above omitted 
    2660 29444 hydrogens added 
    2661  
    2662 Loading residue template for AGS from internal database 
    2663 
    2664 > isolde sim start /D:256-262
    2665 
    2666 ISOLDE: started sim 
    2667 
    2668 > isolde sim stop
    2669 
    2670 Sim termination reason: None 
    2671 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2672 chains... 
    2673 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    2674 standards. 
    2675 ISOLDE: stopped sim 
    2676 
    2677 > isolde sim start /D:248
    2678 
    2679 ISOLDE: started sim 
    2680 
    2681 > isolde sim stop
    2682 
    2683 Sim termination reason: None 
    2684 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2685 chains... 
    2686 ISOLDE: stopped sim 
    2687 
    2688 > isolde sim start /D:266
    2689 
    2690 ISOLDE: started sim 
    2691 
    2692 > isolde sim stop
    2693 
    2694 Sim termination reason: None 
    2695 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2696 chains... 
    2697 ISOLDE: stopped sim 
    2698 
    2699 > ui tool show "Ramachandran Plot"
    2700 
    2701 > isolde sim start /D:323
    2702 
    2703 Sim termination reason: None 
    2704 ISOLDE: stopped sim 
    2705 
    2706 > isolde sim start /D:320-326
    2707 
    2708 Sim termination reason: None 
    2709 ISOLDE: stopped sim 
    2710 
    2711 > isolde sim start /D:323
    2712 
    2713 Sim termination reason: None 
    2714 ISOLDE: stopped sim 
    2715 
    2716 > isolde sim start /D:320-326
    2717 
    2718 Sim termination reason: None 
    2719 ISOLDE: stopped sim 
    2720 
    2721 > isolde sim start /C:562
    2722 
    2723 ISOLDE: started sim 
    2724 
    2725 > isolde sim stop
    2726 
    2727 Sim termination reason: None 
    2728 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2729 chains... 
    2730 ISOLDE: stopped sim 
    2731 
    2732 > ui tool show "Ramachandran Plot"
    2733 
    2734 > isolde sim start /D:323-324
    2735 
    2736 Sim termination reason: None 
    2737 ISOLDE: stopped sim 
    2738 
    2739 > isolde sim start /D:320-326
    2740 
    2741 Sim termination reason: None 
    2742 ISOLDE: stopped sim 
    2743 
    2744 > isolde sim start /D:317-329
    2745 
    2746 Sim termination reason: None 
    2747 ISOLDE: stopped sim 
    2748 Deleted the following atoms from residue AGS D801: H5'', H5', H61, H62 
    2749 
    2750 > isolde sim start /D:314-332
    2751 
    2752 ISOLDE: started sim 
    2753 
    2754 > isolde sim stop
    2755 
    2756 Sim termination reason: None 
    2757 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2758 chains... 
    2759 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    2760 standards. 
    2761 ISOLDE: stopped sim 
    2762 Deleted the following atoms from residue AGS F801: H62, H61, H5', H5'' 
    2763 Deleted the following atoms from residue AGS E801: H61, H5', H62, H5'' 
    2764 Deleted the following atoms from residue AGS C801: H61, H62, H5', H5'' 
    2765 Deleted the following atoms from residue AGS B801: H62, H5', H61, H5'' 
    2766 Deleted the following atoms from residue AGS A801: H5', H62, H5'', H61 
    2767 
    2768 > ui tool show "Ramachandran Plot"
    2769 
    2770 > isolde sim start /D:387
    2771 
    2772 ISOLDE: started sim 
    2773 
    2774 > isolde sim stop
    2775 
    2776 Sim termination reason: None 
    2777 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2778 chains... 
    2779 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    2780 standards. 
    2781 ISOLDE: stopped sim 
    2782 
    2783 > ui tool show "Ramachandran Plot"
    2784 
    2785 > isolde sim start /D:352
    2786 
    2787 ISOLDE: started sim 
    2788 
    2789 > isolde sim stop
    2790 
    2791 Sim termination reason: None 
    2792 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2793 chains... 
    2794 ISOLDE: stopped sim 
    2795 
    2796 > isolde sim start /D:544
    2797 
    2798 ISOLDE: started sim 
    2799 
    2800 > isolde sim stop
    2801 
    2802 Sim termination reason: None 
    2803 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2804 chains... 
    2805 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    2806 standards. 
    2807 ISOLDE: stopped sim 
    2808 
    2809 > isolde sim start /D:541-547
    2810 
    2811 ISOLDE: started sim 
    2812 
    2813 > isolde sim stop
    2814 
    2815 Sim termination reason: None 
    2816 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2817 chains... 
    2818 ISOLDE: stopped sim 
    2819 
    2820 > isolde sim start /D:325
    2821 
    2822 ISOLDE: started sim 
    2823 
    2824 > isolde sim stop
    2825 
    2826 Sim termination reason: None 
    2827 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2828 chains... 
    2829 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    2830 standards. 
    2831 ISOLDE: stopped sim 
    2832 
    2833 > isolde sim start /D:394-400
    2834 
    2835 ISOLDE: started sim 
    2836 
    2837 > isolde sim stop
    2838 
    2839 Sim termination reason: None 
    2840 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2841 chains... 
    2842 ISOLDE: Corrected atom nomenclature of 3 residues in model #2.2 to IUPAC-IUB
    2843 standards. 
    2844 ISOLDE: stopped sim 
    2845 
    2846 > isolde sim start /D:352
    2847 
    2848 ISOLDE: started sim 
    2849 
    2850 > isolde sim stop
    2851 
    2852 Sim termination reason: None 
    2853 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2854 chains... 
    2855 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    2856 standards. 
    2857 ISOLDE: stopped sim 
    2858 
    2859 > isolde sim start /D:284
    2860 
    2861 ISOLDE: started sim 
    2862 
    2863 > isolde sim stop
    2864 
    2865 Sim termination reason: None 
    2866 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2867 chains... 
    2868 ISOLDE: stopped sim 
    2869 
    2870 > isolde sim start /D:345
    2871 
    2872 ISOLDE: started sim 
    2873 
    2874 > isolde sim stop
    2875 
    2876 Sim termination reason: None 
    2877 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2878 chains... 
    2879 ISOLDE: stopped sim 
    2880 
    2881 > isolde sim start /D:305
    2882 
    2883 ISOLDE: started sim 
    2884 
    2885 > isolde sim stop
    2886 
    2887 Sim termination reason: None 
    2888 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2889 chains... 
    2890 ISOLDE: stopped sim 
    2891 
    2892 > isolde sim start /D:267-298
    2893 
    2894 ISOLDE: started sim 
    2895 
    2896 > isolde sim stop
    2897 
    2898 Sim termination reason: None 
    2899 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2900 chains... 
    2901 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    2902 standards. 
    2903 ISOLDE: stopped sim 
    2904 
    2905 > volume #2.1.1.1 level 4.63
    2906 
    2907 > isolde sim start
    2908 > /A:270,273-274,277,280-281,283,285-287,290-291,387-389,392,394-400,431,433-435,438,455-456/B:433/C:386,394,398-399,431-433/D:290,297,323-325,327,353-368,377-395,397-409,412,420-441,455-456,469-482,485,487-642,645,654,657-707,716-736,751,754-755,766-767,769-773,801/E:257,264,289-290,293-801/F:264-267,269-270,294,297,300-395,398,402-515,521-554,570-573,575-576,578-801/G:7,23-26,49,74,76,78,93-97,116-139,142-143,150-169,172,187-190,192-193,197/H:132,139,143,151,154,157-158
    2909 
    2910 ISOLDE: started sim 
    2911 
    2912 > isolde sim stop
    2913 
    2914 Sim termination reason: None 
    2915 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2916 chains... 
    2917 ISOLDE: Corrected atom nomenclature of 52 residues in model #2.2 to IUPAC-IUB
    2918 standards. 
    2919 ISOLDE: stopped sim 
    2920 
    2921 > isolde sim start /E:676
    2922 
    2923 ISOLDE: started sim 
    2924 
    2925 > isolde sim stop
    2926 
    2927 Sim termination reason: None 
    2928 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2929 chains... 
    2930 ISOLDE: stopped sim 
    2931 
    2932 > isolde sim start
    2933 > /A:387-389,392,394-395,397-398,430-435,437-438,441-442,452,455/C:618-628,663,665/D:356-360,362,383-386,424,426-432,473-476,489,492-495,498,506,510,514,523,526-558,561-562,568-709,711,713,716-737,754-756,760,763-801/E:313-341,347,349-373,377-387,390-391,405,409,419-432,434-438,440-441,444,467-801/F:313-314,316-344,347-366,368-369,382,419,421-428,430-431,437,440-441,444-446,467-506,525-545,582-801/G:125,132,160
    2934 
    2935 ISOLDE: started sim 
    2936 
    2937 > isolde sim stop
    2938 
    2939 Sim termination reason: None 
    2940 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2941 chains... 
    2942 ISOLDE: Corrected atom nomenclature of 8 residues in model #2.2 to IUPAC-IUB
    2943 standards. 
    2944 ISOLDE: stopped sim 
    2945 
    2946 > isolde sim start /E:278-294
    2947 
    2948 ISOLDE: started sim 
    2949 
    2950 > isolde sim stop
    2951 
    2952 Sim termination reason: None 
    2953 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2954 chains... 
    2955 ISOLDE: stopped sim 
    2956 
    2957 > isolde sim start /E:670-680
    2958 
    2959 ISOLDE: started sim 
    2960 
    2961 > isolde sim stop discardTo start
    2962 
    2963 Sim termination reason: None 
    2964 reverting to start 
    2965 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2966 chains... 
    2967 ISOLDE: stopped sim 
    2968 
    2969 > isolde sim start /E:667-682
    2970 
    2971 ISOLDE: started sim 
    2972 
    2973 > volume #2.1.1.1 level 2.806
    2974 
    2975 > isolde sim stop
    2976 
    2977 Sim termination reason: None 
    2978 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2979 chains... 
    2980 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    2981 standards. 
    2982 ISOLDE: stopped sim 
    2983 
    2984 > isolde sim start /E:622-633
    2985 
    2986 ISOLDE: started sim 
    2987 
    2988 > isolde sim stop
    2989 
    2990 Sim termination reason: None 
    2991 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    2992 chains... 
    2993 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    2994 standards. 
    2995 ISOLDE: stopped sim 
    2996 
    2997 > isolde sim start /E:676-683
    2998 
    2999 ISOLDE: started sim 
    3000 
    3001 > isolde sim stop discardTo start
    3002 
    3003 Sim termination reason: None 
    3004 reverting to start 
    3005 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3006 chains... 
    3007 ISOLDE: stopped sim 
    3008 
    3009 > isolde sim start /E:673-685
    3010 
    3011 ISOLDE: started sim 
    3012 
    3013 > isolde sim stop
    3014 
    3015 Sim termination reason: None 
    3016 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3017 chains... 
    3018 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3019 standards. 
    3020 ISOLDE: stopped sim 
    3021 
    3022 > isolde sim start /E:344-352
    3023 
    3024 ISOLDE: started sim 
    3025 
    3026 > isolde sim stop
    3027 
    3028 Sim termination reason: None 
    3029 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3030 chains... 
    3031 ISOLDE: stopped sim 
    3032 
    3033 > isolde sim start /E:251-266
    3034 
    3035 ISOLDE: started sim 
    3036 
    3037 > isolde sim stop discardTo start
    3038 
    3039 Sim termination reason: None 
    3040 reverting to start 
    3041 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3042 chains... 
    3043 ISOLDE: stopped sim 
    3044 
    3045 > isolde sim start /E:260
    3046 
    3047 ISOLDE: started sim 
    3048 
    3049 > isolde sim stop
    3050 
    3051 Sim termination reason: None 
    3052 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3053 chains... 
    3054 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3055 standards. 
    3056 ISOLDE: stopped sim 
    3057 
    3058 > isolde sim start /E:304
    3059 
    3060 ISOLDE: started sim 
    3061 
    3062 > isolde sim stop
    3063 
    3064 Sim termination reason: None 
    3065 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3066 chains... 
    3067 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3068 standards. 
    3069 ISOLDE: stopped sim 
    3070 
    3071 > isolde sim start /E:287
    3072 
    3073 ISOLDE: started sim 
    3074 
    3075 > isolde sim stop
    3076 
    3077 Sim termination reason: None 
    3078 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3079 chains... 
    3080 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3081 standards. 
    3082 ISOLDE: stopped sim 
    3083 
    3084 > isolde sim start /E:278-291
    3085 
    3086 ISOLDE: started sim 
    3087 
    3088 > isolde sim stop
    3089 
    3090 Sim termination reason: None 
    3091 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3092 chains... 
    3093 ISOLDE: stopped sim 
    3094 
    3095 > isolde sim start
    3096 > /A:247-642,645,658-659,662-707,713-760,763,766-767,769-773,801/B/C:257-275,277,290-498,501,506,537-543,597-616,622-649,652,658-659,663-689,692,701-729,731,733-753,755-770,778-801/D:387-388,392,395,428,430-439,441-442,445,447-448,476-484,623,626,630-637,639,675,678,709/E:621,623/F:618-627,629,659-665/H:212,216
    3097 
    3098 ISOLDE: started sim 
    3099 
    3100 > isolde sim stop
    3101 
    3102 Sim termination reason: None 
    3103 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3104 chains... 
    3105 ISOLDE: Corrected atom nomenclature of 32 residues in model #2.2 to IUPAC-IUB
    3106 standards. 
    3107 ISOLDE: stopped sim 
    3108 
    3109 > volume #2.1.1.1 level 3.958
    3110 
    3111 > isolde sim start /B:578-588
    3112 
    3113 ISOLDE: started sim 
    3114 
    3115 > isolde sim stop discardTo start
    3116 
    3117 Sim termination reason: None 
    3118 reverting to start 
    3119 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3120 chains... 
    3121 ISOLDE: stopped sim 
    3122 
    3123 > isolde sim start /B:575-590
    3124 
    3125 ISOLDE: started sim 
    3126 
    3127 > isolde sim stop
    3128 
    3129 Sim termination reason: None 
    3130 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3131 chains... 
    3132 ISOLDE: Corrected atom nomenclature of 3 residues in model #2.2 to IUPAC-IUB
    3133 standards. 
    3134 ISOLDE: stopped sim 
    3135 
    3136 > isolde sim start /B:512
    3137 
    3138 ISOLDE: started sim 
    3139 
    3140 > isolde sim stop
    3141 
    3142 Sim termination reason: None 
    3143 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3144 chains... 
    3145 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3146 standards. 
    3147 ISOLDE: stopped sim 
    3148 
    3149 > isolde sim start /B:585-597
    3150 
    3151 ISOLDE: started sim 
    3152 
    3153 > isolde sim stop
    3154 
    3155 Sim termination reason: None 
    3156 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3157 chains... 
    3158 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    3159 standards. 
    3160 ISOLDE: stopped sim 
    3161 
    3162 > isolde sim start /B:511-526
    3163 
    3164 ISOLDE: started sim 
    3165 
    3166 > isolde sim stop
    3167 
    3168 Sim termination reason: None 
    3169 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3170 chains... 
    3171 ISOLDE: stopped sim 
    3172 
    3173 > isolde sim start /B:490-498
    3174 
    3175 ISOLDE: started sim 
    3176 
    3177 > isolde sim stop
    3178 
    3179 Sim termination reason: None 
    3180 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3181 chains... 
    3182 ISOLDE: stopped sim 
    3183 
    3184 > isolde sim start /B:521
    3185 
    3186 ISOLDE: started sim 
    3187 
    3188 > isolde sim stop
    3189 
    3190 Sim termination reason: None 
    3191 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3192 chains... 
    3193 ISOLDE: stopped sim 
    3194 
    3195 > isolde sim start /B:328
    3196 
    3197 ISOLDE: started sim 
    3198 
    3199 > isolde sim stop discardTo start
    3200 
    3201 Sim termination reason: None 
    3202 reverting to start 
    3203 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3204 chains... 
    3205 ISOLDE: stopped sim 
    3206 
    3207 > isolde sim start /B:325-331
    3208 
    3209 ISOLDE: started sim 
    3210 
    3211 > isolde sim stop
    3212 
    3213 Sim termination reason: None 
    3214 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3215 chains... 
    3216 ISOLDE: stopped sim 
    3217 
    3218 > isolde sim start /B:569-578
    3219 
    3220 ISOLDE: started sim 
    3221 
    3222 > isolde sim stop
    3223 
    3224 Sim termination reason: None 
    3225 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3226 chains... 
    3227 ISOLDE: stopped sim 
    3228 
    3229 > isolde sim start /B:484
    3230 
    3231 ISOLDE: started sim 
    3232 
    3233 > isolde sim stop
    3234 
    3235 Sim termination reason: None 
    3236 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3237 chains... 
    3238 ISOLDE: stopped sim 
    3239 
    3240 > isolde sim start /B:563
    3241 
    3242 ISOLDE: started sim 
    3243 
    3244 > isolde sim stop
    3245 
    3246 Sim termination reason: None 
    3247 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3248 chains... 
    3249 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3250 standards. 
    3251 ISOLDE: stopped sim 
    3252 
    3253 > isolde sim start /B:327
    3254 
    3255 ISOLDE: started sim 
    3256 
    3257 > isolde sim stop
    3258 
    3259 Sim termination reason: None 
    3260 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3261 chains... 
    3262 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    3263 standards. 
    3264 ISOLDE: stopped sim 
    3265 
    3266 > isolde sim start /B:773-778
    3267 
    3268 ISOLDE: started sim 
    3269 
    3270 > isolde sim stop
    3271 
    3272 Sim termination reason: None 
    3273 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3274 chains... 
    3275 ISOLDE: stopped sim 
    3276 
    3277 > isolde sim start /B:324
    3278 
    3279 ISOLDE: started sim 
    3280 
    3281 > isolde sim stop
    3282 
    3283 Sim termination reason: None 
    3284 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3285 chains... 
    3286 ISOLDE: stopped sim 
    3287 
    3288 > isolde sim start /B:344-353
    3289 
    3290 ISOLDE: started sim 
    3291 
    3292 > isolde sim stop
    3293 
    3294 Sim termination reason: None 
    3295 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3296 chains... 
    3297 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    3298 standards. 
    3299 ISOLDE: stopped sim 
    3300 
    3301 > isolde sim start
    3302 > /A:254-255,257-271,275,289-801/B:261-270,294,297-298,300-396,402-502,504-506,509,532-533,536-546,584,586-588,594-618,621-801/C:434-435,438,441,447-448,478-484,631-637,639-640,643,674-675,678,706,708-710,714/E:621/F:616-627,655,657-665,691-692/H:120-134,137,186,188-199,201-202,205
    3303 
    3304 ISOLDE: started sim 
    3305 
    3306 > isolde sim stop
    3307 
    3308 Sim termination reason: None 
    3309 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3310 chains... 
    3311 ISOLDE: Corrected atom nomenclature of 5 residues in model #2.2 to IUPAC-IUB
    3312 standards. 
    3313 ISOLDE: stopped sim 
    3314 
    3315 > isolde sim start /A:493
    3316 
    3317 ISOLDE: started sim 
    3318 
    3319 > isolde sim stop
    3320 
    3321 Sim termination reason: None 
    3322 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3323 chains... 
    3324 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3325 standards. 
    3326 ISOLDE: stopped sim 
    3327 
    3328 > isolde sim start /A:601-608
    3329 
    3330 ISOLDE: started sim 
    3331 
    3332 > isolde sim stop
    3333 
    3334 Sim termination reason: None 
    3335 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3336 chains... 
    3337 ISOLDE: stopped sim 
    3338 
    3339 > isolde sim start /A:322-327
    3340 
    3341 ISOLDE: started sim 
    3342 
    3343 > isolde sim stop
    3344 
    3345 Sim termination reason: None 
    3346 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3347 chains... 
    3348 ISOLDE: stopped sim 
    3349 
    3350 > isolde sim start /A:770-775
    3351 
    3352 ISOLDE: started sim 
    3353 
    3354 > isolde sim stop
    3355 
    3356 Sim termination reason: None 
    3357 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3358 chains... 
    3359 ISOLDE: stopped sim 
    3360 
    3361 > isolde sim start /A:578-586
    3362 
    3363 ISOLDE: started sim 
    3364 
    3365 > isolde sim stop
    3366 
    3367 Sim termination reason: None 
    3368 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3369 chains... 
    3370 ISOLDE: stopped sim 
    3371 
    3372 > isolde sim start /A:423-431
    3373 
    3374 ISOLDE: started sim 
    3375 
    3376 > isolde sim stop discardTo start
    3377 
    3378 Sim termination reason: None 
    3379 reverting to start 
    3380 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3381 chains... 
    3382 ISOLDE: stopped sim 
    3383 
    3384 > isolde sim start /A:420-432
    3385 
    3386 ISOLDE: started sim 
    3387 
    3388 > isolde sim stop
    3389 
    3390 Sim termination reason: None 
    3391 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3392 chains... 
    3393 ISOLDE: stopped sim 
    3394 
    3395 > isolde sim start /A:505
    3396 
    3397 ISOLDE: started sim 
    3398 
    3399 > isolde sim stop
    3400 
    3401 Sim termination reason: None 
    3402 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3403 chains... 
    3404 ISOLDE: stopped sim 
    3405 
    3406 > isolde sim start /A:502-508
    3407 
    3408 ISOLDE: started sim 
    3409 
    3410 > isolde sim stop
    3411 
    3412 Sim termination reason: None 
    3413 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3414 chains... 
    3415 ISOLDE: stopped sim 
    3416 
    3417 > isolde sim start /A:588-597
    3418 
    3419 ISOLDE: started sim 
    3420 
    3421 > isolde sim stop
    3422 
    3423 Sim termination reason: None 
    3424 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3425 chains... 
    3426 ISOLDE: stopped sim 
    3427 
    3428 > isolde sim start /A:601-609
    3429 
    3430 ISOLDE: started sim 
    3431 
    3432 > isolde sim stop
    3433 
    3434 Sim termination reason: None 
    3435 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3436 chains... 
    3437 ISOLDE: stopped sim 
    3438 
    3439 > isolde sim start /A:669-680
    3440 
    3441 ISOLDE: started sim 
    3442 
    3443 > isolde sim stop
    3444 
    3445 Sim termination reason: None 
    3446 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3447 chains... 
    3448 ISOLDE: stopped sim 
    3449 
    3450 > isolde sim start /A:579-585
    3451 
    3452 ISOLDE: started sim 
    3453 
    3454 > isolde sim stop discardTo start
    3455 
    3456 Sim termination reason: None 
    3457 reverting to start 
    3458 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3459 chains... 
    3460 ISOLDE: stopped sim 
    3461 
    3462 > isolde sim start /A:576-588
    3463 
    3464 ISOLDE: started sim 
    3465 
    3466 > isolde sim stop
    3467 
    3468 Sim termination reason: None 
    3469 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3470 chains... 
    3471 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    3472 standards. 
    3473 ISOLDE: stopped sim 
    3474 
    3475 > isolde sim start /A:494
    3476 
    3477 ISOLDE: started sim 
    3478 
    3479 > isolde sim stop
    3480 
    3481 Sim termination reason: None 
    3482 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3483 chains... 
    3484 ISOLDE: Corrected atom nomenclature of 3 residues in model #2.2 to IUPAC-IUB
    3485 standards. 
    3486 ISOLDE: stopped sim 
    3487 
    3488 > isolde sim start
    3489 > /A:557,561/B:247-248,250-252,254-256,258-261,263,278,282-339,341-342,347,351-396,398-437,439-440,443-444,452,454-457,461,463,465-478,481,485-592,594,597,599-612,667,669-673,699-700,702,718-734,747-755,801/C:247-284,286-589,591,598-613,626,628-634,636-637,668-684,699-708,712-763,765-766,769-770,801/D:261-274,294,298,301-313,316,329-355,369,373,375,378,380,382,385,387-396,403-407,410,415-422,425-426,428,430,432-472,474-489,603,675-676,742/G:233
    3490 
    3491 ISOLDE: started sim 
    3492 
    3493 > isolde sim stop
    3494 
    3495 Sim termination reason: None 
    3496 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3497 chains... 
    3498 ISOLDE: Corrected atom nomenclature of 10 residues in model #2.2 to IUPAC-IUB
    3499 standards. 
    3500 ISOLDE: stopped sim 
    3501 
    3502 > isolde sim start
    3503 > /A:277,280-281/C:285-286,398-399/D:247,250,254,257,278,280-300,358-359,363,367,377-413,420-421,423-424,427-434,436,454-457,473,506-518,520-521,523,531,534-538,541-570,574-584,670,801/E:247-594,596-615,626-634,665-684,687,697-706,714-737,739-759,801/F:247-560,567-572,575,577-590,598-613,627-641,644,666-685,701-763,765-766,769,801/G:7-56,63,67-200,204/H:151
    3504 
    3505 ISOLDE: started sim 
    3506 
    3507 > isolde sim stop
    3508 
    3509 Sim termination reason: None 
    3510 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3511 chains... 
    3512 ISOLDE: Corrected atom nomenclature of 6 residues in model #2.2 to IUPAC-IUB
    3513 standards. 
    3514 ISOLDE: stopped sim 
    3515 
    3516 > isolde sim start
    3517 > /A:247-292,295-296,299,396,456/B:247-250,252-253,256,269-292,396-397/C:273,276-281,283-288,291/D:247,276-292,397-400/E:247-251,254,274-297,300,386-387,389-390,393-403,405,408,432-433,456/F:247-264,266-309,319-320,322-325,327,351-445,448-478,481,485,490,493,498,501-524,527-528,530-584,605-606,801/G:7-232,235,239/H:16-22,24-33,37,58-61,78-93,133-157,164-165,167-180,196-245
    3518 
    3519 ISOLDE: started sim 
    3520 
    3521 > isolde sim stop
    3522 
    3523 Sim termination reason: None 
    3524 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3525 chains... 
    3526 ISOLDE: Corrected atom nomenclature of 8 residues in model #2.2 to IUPAC-IUB
    3527 standards. 
    3528 ISOLDE: stopped sim 
    3529 
    3530 > isolde sim start /B:624-634
    3531 
    3532 ISOLDE: started sim 
    3533 
    3534 > isolde sim stop
    3535 
    3536 Sim termination reason: None 
    3537 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3538 chains... 
    3539 ISOLDE: stopped sim 
    3540 
    3541 > isolde sim start
    3542 > /A:431-432,616,618-630,635,660-667,670/B:356-360,362,383-386,424,426-432,473-476,492-495,498,526-555,557-558,561,570-709,711,713-714,716-719,721-737,755,758,760,762-801/C:313,316-339,347,349-373,377-388,390-391,405,409,419-441,444,467-562,564-801/D:313-314,316-344,346-369,372-373,379,381-385,419-432,434-449,467-506,525-547,575,581-801/E:603,613,615-666,668,672-693,703-718,722,735-743,759-768,771,775-778/F:623,659-660
    3543 
    3544 ISOLDE: started sim 
    3545 
    3546 > isolde sim stop
    3547 
    3548 Sim termination reason: None 
    3549 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3550 chains... 
    3551 ISOLDE: Corrected atom nomenclature of 11 residues in model #2.2 to IUPAC-IUB
    3552 standards. 
    3553 ISOLDE: stopped sim 
    3554 
    3555 > isolde sim start /C:592-597
    3556 
    3557 ISOLDE: started sim 
    3558 
    3559 > isolde sim stop
    3560 
    3561 Sim termination reason: None 
    3562 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3563 chains... 
    3564 ISOLDE: stopped sim 
    3565 
    3566 > isolde sim start /C:307-316
    3567 
    3568 ISOLDE: started sim 
    3569 
    3570 > isolde sim stop
    3571 
    3572 Sim termination reason: None 
    3573 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3574 chains... 
    3575 ISOLDE: stopped sim 
    3576 
    3577 > volume #2.1.1.1 level 4.83
    3578 
    3579 > isolde sim start /C:393-400
    3580 
    3581 ISOLDE: started sim 
    3582 
    3583 > isolde sim stop
    3584 
    3585 Sim termination reason: None 
    3586 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3587 chains... 
    3588 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    3589 standards. 
    3590 ISOLDE: stopped sim 
    3591 
    3592 > isolde sim start /C:269-289
    3593 
    3594 ISOLDE: started sim 
    3595 
    3596 > volume #2.1.1.1 level 4.339
    3597 
    3598 > isolde sim stop
    3599 
    3600 Sim termination reason: None 
    3601 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3602 chains... 
    3603 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3604 standards. 
    3605 ISOLDE: stopped sim 
    3606 
    3607 > isolde sim start /C:272
    3608 
    3609 ISOLDE: started sim 
    3610 
    3611 > isolde sim stop
    3612 
    3613 Sim termination reason: None 
    3614 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3615 chains... 
    3616 ISOLDE: stopped sim 
    3617 
    3618 > isolde sim start /C:265-278
    3619 
    3620 ISOLDE: started sim 
    3621 
    3622 > isolde sim stop
    3623 
    3624 Sim termination reason: None 
    3625 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3626 chains... 
    3627 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3628 standards. 
    3629 ISOLDE: stopped sim 
    3630 
    3631 > isolde sim start /C:262-282
    3632 
    3633 ISOLDE: started sim 
    3634 
    3635 > isolde sim stop
    3636 
    3637 Sim termination reason: None 
    3638 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3639 chains... 
    3640 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3641 standards. 
    3642 ISOLDE: stopped sim 
    3643 
    3644 > isolde sim start /C:259-288
    3645 
    3646 ISOLDE: started sim 
    3647 
    3648 > isolde sim stop
    3649 
    3650 Sim termination reason: None 
    3651 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3652 chains... 
    3653 ISOLDE: stopped sim 
    3654 
    3655 > isolde sim start /C:300-309
    3656 
    3657 ISOLDE: started sim 
    3658 
    3659 > isolde sim stop
    3660 
    3661 Sim termination reason: None 
    3662 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3663 chains... 
    3664 ISOLDE: stopped sim 
    3665 
    3666 > isolde sim start /C:321-329
    3667 
    3668 ISOLDE: started sim 
    3669 
    3670 > isolde sim stop
    3671 
    3672 Sim termination reason: None 
    3673 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3674 chains... 
    3675 ISOLDE: stopped sim 
    3676 
    3677 > isolde sim start /C:515-526
    3678 
    3679 ISOLDE: started sim 
    3680 
    3681 > volume #2.1.1.1 level 3.573
    3682 
    3683 > isolde sim stop
    3684 
    3685 Sim termination reason: None 
    3686 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3687 chains... 
    3688 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3689 standards. 
    3690 ISOLDE: stopped sim 
    3691 
    3692 > isolde sim start /C:512-513
    3693 
    3694 ISOLDE: started sim 
    3695 
    3696 > isolde sim stop
    3697 
    3698 Sim termination reason: None 
    3699 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3700 chains... 
    3701 ISOLDE: stopped sim 
    3702 
    3703 > isolde sim start /C:513-519
    3704 
    3705 ISOLDE: started sim 
    3706 
    3707 > isolde sim stop
    3708 
    3709 Sim termination reason: None 
    3710 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3711 chains... 
    3712 ISOLDE: stopped sim 
    3713 
    3714 > isolde sim start /C:764
    3715 
    3716 ISOLDE: started sim 
    3717 
    3718 > isolde sim stop
    3719 
    3720 Sim termination reason: None 
    3721 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3722 chains... 
    3723 ISOLDE: stopped sim 
    3724 
    3725 > isolde sim start /D:665-676
    3726 
    3727 ISOLDE: started sim 
    3728 
    3729 > isolde sim stop
    3730 
    3731 Sim termination reason: None 
    3732 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3733 chains... 
    3734 ISOLDE: Corrected atom nomenclature of 3 residues in model #2.2 to IUPAC-IUB
    3735 standards. 
    3736 ISOLDE: stopped sim 
    3737 
    3738 > isolde sim start /D:589-596
    3739 
    3740 ISOLDE: started sim 
    3741 
    3742 > isolde sim stop
    3743 
    3744 Sim termination reason: None 
    3745 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3746 chains... 
    3747 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    3748 standards. 
    3749 ISOLDE: stopped sim 
    3750 
    3751 > isolde sim start /D:582
    3752 
    3753 ISOLDE: started sim 
    3754 
    3755 > isolde sim stop
    3756 
    3757 Sim termination reason: None 
    3758 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3759 chains... 
    3760 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3761 standards. 
    3762 ISOLDE: stopped sim 
    3763 
    3764 > isolde sim start /D:679
    3765 
    3766 ISOLDE: started sim 
    3767 
    3768 > isolde sim stop
    3769 
    3770 Sim termination reason: None 
    3771 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3772 chains... 
    3773 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3774 standards. 
    3775 ISOLDE: stopped sim 
    3776 
    3777 > isolde sim start /D:579-586
    3778 
    3779 ISOLDE: started sim 
    3780 
    3781 > isolde sim stop
    3782 
    3783 Sim termination reason: None 
    3784 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3785 chains... 
    3786 ISOLDE: stopped sim 
    3787 
    3788 > isolde sim start
    3789 > /A:247-311,333-356,358,360-490,603,605,629-633,672-678,801/B:266-267,269-274,276-281,284-292,294,297-298,303,380,382-408,425-461,463,476-484,632/C:286-287,290,384-402,427-439,455-456,478,480,623,631-632/D:381-395,397-400,402,405,424-440,455,473-474,476-480,542,546,597,604-606,609,611-636,638-639,660-675,677,684/E:324-327,329-330,333,351-368,377-395,398-409,412,420-444,452,455,468-516,521-562,565,568-740,743-744,747-801/F:297,307,309-394,398,401-450,452-455,461,463-801/G:7-11,13,16,19-29,47-54,56,69-78,91-103,112-211,214/H:7,9,11,16,18-30,47-54,69,71-79,89-99,115-223,226
    3790 
    3791 ISOLDE: started sim 
    3792 
    3793 > isolde sim stop
    3794 
    3795 Sim termination reason: None 
    3796 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3797 chains... 
    3798 ISOLDE: Corrected atom nomenclature of 9 residues in model #2.2 to IUPAC-IUB
    3799 standards. 
    3800 ISOLDE: stopped sim 
    3801 
    3802 > save
    3803 > /Volumes/Research/NCI/Structure_refinement/lon_ecoli/12mer/6mer_dock_ntd-4.pdb
    3804 
    3805 > isolde sim start /F:276-285
    3806 
    3807 ISOLDE: started sim 
    3808 
    3809 > isolde sim stop
    3810 
    3811 Sim termination reason: None 
    3812 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3813 chains... 
    3814 ISOLDE: stopped sim 
    3815 
    3816 > isolde sim start /F:300-308
    3817 
    3818 ISOLDE: started sim 
    3819 
    3820 > isolde sim stop
    3821 
    3822 Sim termination reason: None 
    3823 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3824 chains... 
    3825 ISOLDE: stopped sim 
    3826 
    3827 > isolde sim start /F:429-438
    3828 
    3829 ISOLDE: started sim 
    3830 
    3831 > isolde sim stop
    3832 
    3833 Sim termination reason: None 
    3834 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3835 chains... 
    3836 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3837 standards. 
    3838 ISOLDE: stopped sim 
    3839 
    3840 > isolde sim start /F:514-523
    3841 
    3842 ISOLDE: started sim 
    3843 
    3844 > isolde sim stop
    3845 
    3846 Sim termination reason: None 
    3847 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3848 chains... 
    3849 ISOLDE: stopped sim 
    3850 
    3851 > isolde sim start /F:666-675
    3852 
    3853 ISOLDE: started sim 
    3854 
    3855 > isolde sim stop
    3856 
    3857 Sim termination reason: None 
    3858 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3859 chains... 
    3860 ISOLDE: stopped sim 
    3861 
    3862 > isolde sim start /F:264-280
    3863 
    3864 ISOLDE: started sim 
    3865 
    3866 > isolde sim stop discardTo start
    3867 
    3868 Sim termination reason: None 
    3869 reverting to start 
    3870 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3871 chains... 
    3872 ISOLDE: stopped sim 
    3873 
    3874 > isolde sim start /F:251-262
    3875 
    3876 ISOLDE: started sim 
    3877 
    3878 > isolde sim stop
    3879 
    3880 Sim termination reason: None 
    3881 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3882 chains... 
    3883 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3884 standards. 
    3885 ISOLDE: stopped sim 
    3886 
    3887 > isolde sim start /F:264-287
    3888 
    3889 ISOLDE: started sim 
    3890 
    3891 > isolde sim stop discardTo start
    3892 
    3893 Sim termination reason: None 
    3894 reverting to start 
    3895 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3896 chains... 
    3897 ISOLDE: stopped sim 
    3898 
    3899 > isolde sim start sel
    3900 
    3901 ISOLDE: started sim 
    3902 
    3903 > isolde sim stop
    3904 
    3905 Sim termination reason: None 
    3906 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3907 chains... 
    3908 ISOLDE: Corrected atom nomenclature of 4 residues in model #2.2 to IUPAC-IUB
    3909 standards. 
    3910 ISOLDE: stopped sim 
    3911 
    3912 > isolde sim start /F:263-287
    3913 
    3914 ISOLDE: started sim 
    3915 
    3916 > isolde sim stop
    3917 
    3918 Sim termination reason: None 
    3919 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3920 chains... 
    3921 ISOLDE: Corrected atom nomenclature of 3 residues in model #2.2 to IUPAC-IUB
    3922 standards. 
    3923 ISOLDE: stopped sim 
    3924 
    3925 > isolde sim start /F:250-262
    3926 
    3927 ISOLDE: started sim 
    3928 
    3929 > isolde sim stop
    3930 
    3931 Sim termination reason: None 
    3932 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3933 chains... 
    3934 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3935 standards. 
    3936 ISOLDE: stopped sim 
    3937 
    3938 > isolde sim start /F:265-280
    3939 
    3940 ISOLDE: started sim 
    3941 
    3942 > isolde sim stop discardTo start
    3943 
    3944 Sim termination reason: None 
    3945 reverting to start 
    3946 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3947 chains... 
    3948 ISOLDE: stopped sim 
    3949 
    3950 > isolde sim start /F:265-280
    3951 
    3952 ISOLDE: started sim 
    3953 
    3954 > isolde sim stop
    3955 
    3956 Sim termination reason: None 
    3957 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3958 chains... 
    3959 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    3960 standards. 
    3961 ISOLDE: stopped sim 
    3962 s1:
    3963 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    3964 s2:
    3965 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    3966 s1:
    3967 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    3968 s2:
    3969 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    3970 s1:
    3971 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    3972 s2:
    3973 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    3974 s1:
    3975 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    3976 s2:
    3977 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    3978 s1:
    3979 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    3980 s2:
    3981 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    3982 s1:
    3983 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    3984 s2:
    3985 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    3986 s1:
    3987 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYI..DWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEV.IRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    3988 s2:
    3989 ........................ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD............................................................................................................................................................................................................................................................. 
    3990 s1:
    3991 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYI..DWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEV.IRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    3992 s2:
    3993 ........................ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VND.LFTVGTVASILQMLKLP................DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD............................................................................................................................................................................................................................................................. 
    3994 s1:
    3995 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    3996 s2:
    3997 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    3998 s1:
    3999 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4000 s2:
    4001 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4002 s1:
    4003 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4004 s2:
    4005 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4006 s1:
    4007 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4008 s2:
    4009 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    4010 s1:
    4011 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4012 s2:
    4013 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4014 s1:
    4015 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4016 s2:
    4017 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4018 s1:
    4019 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4020 s2:
    4021 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4022 s1:
    4023 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4024 s2:
    4025 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VND.LFTVGTVASILQMLKLP................DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4026 s1:
    4027 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4028 s2:
    4029 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    4030 s1:
    4031 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4032 s2:
    4033 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4034 s1:
    4035 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4036 s2:
    4037 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4038 s1:
    4039 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4040 s2:
    4041 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    4042 s1:
    4043 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4044 s2:
    4045 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4046 s1:
    4047 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4048 s2:
    4049 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4050 s1:
    4051 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4052 s2:
    4053 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4054 s1:
    4055 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA.LGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVG.VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL......LPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4056 s2:
    4057 ............................................................ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPT.....IDEREQEVLVRTAISQFEGYIKL.NKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD........................................................................................................................................................................................................................................... 
    4058 s1:
    4059 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    4060 s2:
    4061 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    4062 s1:
    4063 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    4064 s2:
    4065 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4066 s1:
    4067 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    4068 s2:
    4069 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4070 s1:
    4071 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    4072 s2:
    4073 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    4074 s1:
    4075 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    4076 s2:
    4077 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4078 s1:
    4079 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    4080 s2:
    4081 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4082 s1:
    4083 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    4084 s2:
    4085 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD............................................................................................................................................................................................................................................................. 
    4086 s1:
    4087 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    4088 s2:
    4089 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VND.LFTVGTVASILQMLKLP................DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD............................................................................................................................................................................................................................................................. 
    4090 s1:
    4091 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4092 s2:
    4093 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    4094 s1:
    4095 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4096 s2:
    4097 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4098 s1:
    4099 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4100 s2:
    4101 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4102 s1:
    4103 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4104 s2:
    4105 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    4106 s1:
    4107 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4108 s2:
    4109 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4110 s1:
    4111 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4112 s2:
    4113 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4114 s1:
    4115 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4116 s2:
    4117 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4118 s1:
    4119 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4120 s2:
    4121 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VND.LFTVGTVASILQMLKLP................DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4122 s1:
    4123 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4124 s2:
    4125 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    4126 s1:
    4127 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4128 s2:
    4129 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4130 s1:
    4131 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4132 s2:
    4133 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4134 s1:
    4135 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4136 s2:
    4137 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP... 
    4138 s1:
    4139 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4140 s2:
    4141 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4142 s1:
    4143 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4144 s2:
    4145 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4146 s1:
    4147 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAK..RHLLPKQIERN...........ALKK..GELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4148 s2:
    4149 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLK........LADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4150 s1:
    4151 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA.LGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVG.VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRH....LL..PKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4152 s2:
    4153 ............................................................ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPT.....IDEREQEVLVRTAISQFEGYIKL.NKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD........................................................................................................................................................................................................................................... 
    4154 s1:
    4155 ........................ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD............................................................................................................................................................................................................................................................. 
    4156 s2:
    4157 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYI..DWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEV.IRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    4158 s1:
    4159 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4160 s2:
    4161 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4162 s1:
    4163 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4164 s2:
    4165 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4166 s1:
    4167 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD............................................................................................................................................................................................................................................................. 
    4168 s2:
    4169 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    4170 s1:
    4171 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4172 s2:
    4173 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4174 s1:
    4175 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VNDLFT........VGTVASILQMLKLPDGTVKV.LVEGLQRA........RISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLK........LADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4176 s2:
    4177 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAK..RHLLPKQIERN...........ALKK..GELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4178 s1:
    4179 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD 
    4180 s2:
    4181 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD 
    4182 s1:
    4183 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD 
    4184 s2:
    4185 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD 
    4186 s1:
    4187 ........................ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VND.LFTVGTVASILQMLKLP................DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD............................................................................................................................................................................................................................................................. 
    4188 s2:
    4189 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYI..DWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEV.IRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    4190 s1:
    4191 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VND.LFTVGTVASILQMLKLP................DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4192 s2:
    4193 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4194 s1:
    4195 ............................................................ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPT.....IDEREQEVLVRTAISQFEGYIKL.NKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD........................................................................................................................................................................................................................................... 
    4196 s2:
    4197 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA.LGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVG.VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL......LPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4198 s1:
    4199 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VND.LFTVGTVASILQMLKLP................DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD............................................................................................................................................................................................................................................................. 
    4200 s2:
    4201 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEP 
    4202 s1:
    4203 ...................ERIEIPVLPLRDVVVYPHMVIPLFVGR...EKSIRCLEAAMDHDKKIMLVAQKEASTDEPG...VND.LFTVGTVASILQMLKLP................DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLES.P.TIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD................................................................................................................................................................................................................................................................ 
    4204 s2:
    4205 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY.DLSDVMFVATSNS.....MNIPAPLLDRMEVIR.LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4206 s1:
    4207 ............................................................ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPT.....IDEREQEVLVRTAISQFEGYIKL.NKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD........................................................................................................................................................................................................................................... 
    4208 s2:
    4209 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA.LGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVG.VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRH....LL..PKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGM 
    4210 s1:
    4211 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD 
    4212 s2:
    4213 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD 
    4214 s1:
    4215 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD 
    4216 s2:
    4217 ERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMD 
    4218 
    4219 "Adjust for PAE" is checked in the distance restraint options, but the
    4220 reference model has no PAE matrix assigned. This option has been ignored. 
    4221 
    4222 > isolde restrain distances "/F:247-297" templateAtoms "#2.2/B" perChain false
    4223 > adjustForConfidence false useCoordinateAlignment false kappa 4.40 fallOff
    4224 > 2.50 groupName "Reference Distance Restraints"
    4225 
    4226 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4227 chains... 
    4228 
    4229 > isolde sim start /F:247-297
    4230 
    4231 ISOLDE: started sim 
    4232 
    4233 > isolde stepto prev
    4234 
    4235 > isolde sim stop
    4236 
    4237 Sim termination reason: None 
    4238 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4239 chains... 
    4240 ISOLDE: Corrected atom nomenclature of 4 residues in model #2.2 to IUPAC-IUB
    4241 standards. 
    4242 ISOLDE: stopped sim 
    4243 
    4244 > close #2.2.9
    4245 
    4246 > close #2.2.3
    4247 
    4248 > isolde sim start /F:248-260
    4249 
    4250 ISOLDE: started sim 
    4251 
    4252 > isolde sim stop
    4253 
    4254 Sim termination reason: None 
    4255 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4256 chains... 
    4257 ISOLDE: stopped sim 
    4258 
    4259 > isolde sim start /F:247-266
    4260 
    4261 ISOLDE: started sim 
    4262 
    4263 > isolde sim stop
    4264 
    4265 Sim termination reason: None 
    4266 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4267 chains... 
    4268 ISOLDE: Corrected atom nomenclature of 3 residues in model #2.2 to IUPAC-IUB
    4269 standards. 
    4270 ISOLDE: stopped sim 
    4271 
    4272 > isolde sim start /F:247-262
    4273 
    4274 ISOLDE: started sim 
    4275 
    4276 > isolde sim stop
    4277 
    4278 Sim termination reason: None 
    4279 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4280 chains... 
    4281 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    4282 standards. 
    4283 ISOLDE: stopped sim 
    4284 
    4285 > close #2.2.9
    4286 
    4287 > close #2.2.3
    4288 
    4289 > isolde sim start /F:247-260
    4290 
    4291 ISOLDE: started sim 
    4292 
    4293 > isolde sim stop
    4294 
    4295 Sim termination reason: None 
    4296 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4297 chains... 
    4298 ISOLDE: stopped sim 
    4299 
    4300 > isolde sim start sel
    4301 
    4302 ISOLDE: started sim 
    4303 
    4304 > isolde sim stop
    4305 
    4306 Sim termination reason: None 
    4307 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4308 chains... 
    4309 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    4310 standards. 
    4311 ISOLDE: stopped sim 
    4312 
    4313 > isolde sim start /F:269-280
    4314 
    4315 ISOLDE: started sim 
    4316 
    4317 > isolde sim stop
    4318 
    4319 Sim termination reason: None 
    4320 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4321 chains... 
    4322 ISOLDE: Corrected atom nomenclature of 3 residues in model #2.2 to IUPAC-IUB
    4323 standards. 
    4324 ISOLDE: stopped sim 
    4325 
    4326 > isolde sim start /F:283
    4327 
    4328 ISOLDE: started sim 
    4329 
    4330 > isolde sim stop
    4331 
    4332 Sim termination reason: None 
    4333 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4334 chains... 
    4335 ISOLDE: stopped sim 
    4336 
    4337 > isolde sim start /F:266-298
    4338 
    4339 ISOLDE: started sim 
    4340 
    4341 > isolde sim stop
    4342 
    4343 Sim termination reason: None 
    4344 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4345 chains... 
    4346 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    4347 standards. 
    4348 ISOLDE: stopped sim 
    4349 
    4350 > isolde sim start /F:269-280
    4351 
    4352 ISOLDE: started sim 
    4353 
    4354 > isolde sim stop
    4355 
    4356 Sim termination reason: None 
    4357 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4358 chains... 
    4359 ISOLDE: stopped sim 
    4360 
    4361 > isolde sim start /F:266-285
    4362 
    4363 ISOLDE: started sim 
    4364 
    4365 > isolde sim stop
    4366 
    4367 Sim termination reason: None 
    4368 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4369 chains... 
    4370 ISOLDE: stopped sim 
    4371 
    4372 > isolde sim start
    4373 > /A:280-281/C:280-281,283-289/D:247-259,270-301,389-390,393-405,407-408,411-412,433,455-458/E:247-312,315-325,327,331,334,337-338,341-342,344-474,476-478,480-481,483-486,488,490,493,501-523,531,536,538,540-568,570,578-579,583,606,801/F:247-494,497-521,528,531-532,536-557,559-560,579,583-584,603-607,673,720,801/G:7-211,213-214,217-218/H:226,229-230,233-234,236-238,240-241,243-245
    4374 
    4375 ISOLDE: started sim 
    4376 
    4377 > isolde sim stop
    4378 
    4379 Sim termination reason: None 
    4380 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4381 chains... 
    4382 ISOLDE: Corrected atom nomenclature of 5 residues in model #2.2 to IUPAC-IUB
    4383 standards. 
    4384 ISOLDE: stopped sim 
    4385 
    4386 > save
    4387 > /Volumes/Research/NCI/Structure_refinement/lon_ecoli/12mer/6mer_dock_ntd-4.pdb
    4388 
    4389 > isolde sim start /F:286-295
    4390 
    4391 ISOLDE: started sim 
    4392 
    4393 > isolde sim stop
    4394 
    4395 Sim termination reason: None 
    4396 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4397 chains... 
    4398 ISOLDE: stopped sim 
    4399 
    4400 > isolde sim start /F:667-674
    4401 
    4402 ISOLDE: started sim 
    4403 
    4404 > isolde sim stop
    4405 
    4406 Sim termination reason: None 
    4407 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4408 chains... 
    4409 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    4410 standards. 
    4411 ISOLDE: stopped sim 
    4412 
    4413 > isolde sim start /F:345-352
    4414 
    4415 ISOLDE: started sim 
    4416 
    4417 > isolde sim stop
    4418 
    4419 Sim termination reason: None 
    4420 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4421 chains... 
    4422 ISOLDE: stopped sim 
    4423 
    4424 > isolde sim start /F:287-292
    4425 
    4426 ISOLDE: started sim 
    4427 
    4428 > isolde sim stop
    4429 
    4430 Sim termination reason: None 
    4431 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4432 chains... 
    4433 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    4434 standards. 
    4435 ISOLDE: stopped sim 
    4436 
    4437 > isolde sim start /F:708-716
    4438 
    4439 ISOLDE: started sim 
    4440 
    4441 > isolde sim stop
    4442 
    4443 Sim termination reason: None 
    4444 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4445 chains... 
    4446 ISOLDE: stopped sim 
    4447 
    4448 > isolde sim start /F:673-682
    4449 
    4450 ISOLDE: started sim 
    4451 
    4452 > isolde sim stop
    4453 
    4454 Sim termination reason: None 
    4455 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4456 chains... 
    4457 ISOLDE: stopped sim 
    4458 
    4459 > isolde sim start /F:653-662
    4460 
    4461 ISOLDE: started sim 
    4462 
    4463 > isolde sim stop
    4464 
    4465 Sim termination reason: None 
    4466 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4467 chains... 
    4468 ISOLDE: Corrected atom nomenclature of 3 residues in model #2.2 to IUPAC-IUB
    4469 standards. 
    4470 ISOLDE: stopped sim 
    4471 
    4472 > isolde sim start /F:515-522
    4473 
    4474 ISOLDE: started sim 
    4475 
    4476 > isolde sim stop
    4477 
    4478 Sim termination reason: None 
    4479 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4480 chains... 
    4481 ISOLDE: stopped sim 
    4482 
    4483 > isolde sim start /F:624-627
    4484 
    4485 ISOLDE: started sim 
    4486 
    4487 > isolde sim stop
    4488 
    4489 Sim termination reason: None 
    4490 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4491 chains... 
    4492 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    4493 standards. 
    4494 ISOLDE: stopped sim 
    4495 
    4496 > isolde sim start /F:514-522
    4497 
    4498 ISOLDE: started sim 
    4499 
    4500 > isolde sim stop
    4501 
    4502 Sim termination reason: None 
    4503 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4504 chains... 
    4505 ISOLDE: stopped sim 
    4506 
    4507 > isolde sim start /A:598-609
    4508 
    4509 ISOLDE: started sim 
    4510 
    4511 > isolde sim stop
    4512 
    4513 Sim termination reason: None 
    4514 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4515 chains... 
    4516 ISOLDE: stopped sim 
    4517 
    4518 > isolde sim start /A:386-397
    4519 
    4520 ISOLDE: started sim 
    4521 
    4522 > isolde sim stop
    4523 
    4524 Sim termination reason: None 
    4525 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4526 chains... 
    4527 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    4528 standards. 
    4529 ISOLDE: stopped sim 
    4530 
    4531 > isolde sim start /A:579-587
    4532 
    4533 ISOLDE: started sim 
    4534 
    4535 > isolde sim stop
    4536 
    4537 Sim termination reason: None 
    4538 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4539 chains... 
    4540 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    4541 standards. 
    4542 ISOLDE: stopped sim 
    4543 
    4544 > isolde sim start /A:344-352
    4545 
    4546 ISOLDE: started sim 
    4547 
    4548 > isolde sim stop
    4549 
    4550 Sim termination reason: None 
    4551 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4552 chains... 
    4553 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    4554 standards. 
    4555 ISOLDE: stopped sim 
    4556 
    4557 > isolde sim start /A:578-586
    4558 
    4559 ISOLDE: started sim 
    4560 
    4561 > isolde sim stop
    4562 
    4563 Sim termination reason: None 
    4564 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4565 chains... 
    4566 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    4567 standards. 
    4568 ISOLDE: stopped sim 
    4569 
    4570 > isolde sim start /A:585-594
    4571 
    4572 ISOLDE: started sim 
    4573 
    4574 > isolde sim stop
    4575 
    4576 Sim termination reason: None 
    4577 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4578 chains... 
    4579 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    4580 standards. 
    4581 ISOLDE: stopped sim 
    4582 
    4583 > isolde sim start /A:258-266
    4584 
    4585 ISOLDE: started sim 
    4586 
    4587 > isolde sim stop
    4588 
    4589 Sim termination reason: None 
    4590 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4591 chains... 
    4592 ISOLDE: stopped sim 
    4593 
    4594 > isolde sim start /A:582
    4595 
    4596 ISOLDE: started sim 
    4597 
    4598 > isolde sim stop discardTo start
    4599 
    4600 Sim termination reason: None 
    4601 reverting to start 
    4602 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4603 chains... 
    4604 ISOLDE: stopped sim 
    4605 
    4606 > isolde sim start /A:454-463
    4607 
    4608 ISOLDE: started sim 
    4609 
    4610 > isolde sim stop discardTo start
    4611 
    4612 Sim termination reason: None 
    4613 reverting to start 
    4614 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4615 chains... 
    4616 ISOLDE: stopped sim 
    4617 
    4618 > isolde sim start /C:655-661
    4619 
    4620 ISOLDE: started sim 
    4621 
    4622 > isolde sim stop
    4623 
    4624 Sim termination reason: None 
    4625 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4626 chains... 
    4627 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    4628 standards. 
    4629 ISOLDE: stopped sim 
    4630 
    4631 > isolde sim start /C:358-367
    4632 
    4633 ISOLDE: started sim 
    4634 
    4635 "Adjust for PAE" is checked in the distance restraint options, but the
    4636 reference model has no PAE matrix assigned. This option has been ignored. 
    4637 
    4638 Traceback (most recent call last): 
    4639 File
    4640 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4641 packages/chimerax/core/commands/atomspec.py", line 153, in _parse_quoted 
    4642 ast = parser.parse(token, "atom_specifier", semantics=semantics) 
    4643 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4644 File
    4645 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4646 packages/grako/contexts.py", line 206, in parse 
    4647 result = rule() 
    4648 ^^^^^^ 
    4649 File
    4650 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4651 packages/grako/contexts.py", line 59, in wrapper 
    4652 return self._call(rule, name, params, kwparams) 
    4653 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4654 File
    4655 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4656 packages/grako/contexts.py", line 458, in _call 
    4657 node, newpos, newstate = self._invoke_rule(rule, name, params, kwparams) 
    4658 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4659 File
    4660 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4661 packages/grako/contexts.py", line 497, in _invoke_rule 
    4662 rule(self) 
    4663 File
    4664 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4665 packages/chimerax/core/commands/_atomspec.py", line 105, in _atom_specifier_ 
    4666 self._error('no available options') 
    4667 File
    4668 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4669 packages/grako/contexts.py", line 430, in _error 
    4670 raise etype( 
    4671 grako.exceptions.FailedParse:   
    4672  
    4673 During handling of the above exception, another exception occurred: 
    4674  
    4675 Traceback (most recent call last): 
    4676 File "/Users/rathorei2/Library/Application
    4677 Support/ChimeraX/1.8/lib/python/site-
    4678 packages/chimerax/isolde/ui/restraints_tab/reference_model.py", line 96, in
    4679  
    4680 rsb.clicked.connect(lambda: self.apply_restraints(selected_only=True)) 
    4681 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4682 File "/Users/rathorei2/Library/Application
    4683 Support/ChimeraX/1.8/lib/python/site-
    4684 packages/chimerax/isolde/ui/restraints_tab/reference_model.py", line 405, in
    4685 apply_restraints 
    4686 run(self.session, cmd) 
    4687 File
    4688 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4689 packages/chimerax/core/commands/run.py", line 49, in run 
    4690 results = command.run(text, log=log, return_json=return_json) 
    4691 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4692 File
    4693 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4694 packages/chimerax/core/commands/cli.py", line 3166, in run 
    4695 prev_annos = self._process_positional_arguments() 
    4696 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4697 File
    4698 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4699 packages/chimerax/core/commands/cli.py", line 2926, in
    4700 _process_positional_arguments 
    4701 value, text = self._parse_arg(anno, text, session, False) 
    4702 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4703 File
    4704 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4705 packages/chimerax/core/commands/cli.py", line 2780, in _parse_arg 
    4706 value, replacement, rest = annotation.parse(text, session) 
    4707 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4708 File
    4709 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4710 packages/chimerax/core/commands/cli.py", line 550, in parse 
    4711 value, consumed, rest = self.annotation.parse(text, session) 
    4712 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4713 File
    4714 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4715 packages/chimerax/atomic/args.py", line 35, in parse 
    4716 aspec, text, rest = super().parse(text, session) 
    4717 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4718 File
    4719 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4720 packages/chimerax/core/commands/atomspec.py", line 119, in parse 
    4721 return cls._parse_quoted(text, session) 
    4722 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4723 File
    4724 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4725 packages/chimerax/core/commands/atomspec.py", line 160, in _parse_quoted 
    4726 offset = index_map[e.pos] 
    4727 ~~~~~~~~~^^^^^^^ 
    4728 IndexError: list index out of range 
    4729  
    4730 IndexError: list index out of range 
    4731  
    4732 File
    4733 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4734 packages/chimerax/core/commands/atomspec.py", line 160, in _parse_quoted 
    4735 offset = index_map[e.pos] 
    4736 ~~~~~~~~~^^^^^^^ 
    4737  
    4738 See log for complete Python traceback. 
    4739  
    4740 
    4741 > isolde sim stop
    4742 
    4743 Sim termination reason: None 
    4744 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4745 chains... 
    4746 ISOLDE: stopped sim 
    4747 
    4748 "Adjust for PAE" is checked in the distance restraint options, but the
    4749 reference model has no PAE matrix assigned. This option has been ignored. 
    4750 
    4751 Traceback (most recent call last): 
    4752 File
    4753 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4754 packages/chimerax/core/commands/atomspec.py", line 153, in _parse_quoted 
    4755 ast = parser.parse(token, "atom_specifier", semantics=semantics) 
    4756 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4757 File
    4758 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4759 packages/grako/contexts.py", line 206, in parse 
    4760 result = rule() 
    4761 ^^^^^^ 
    4762 File
    4763 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4764 packages/grako/contexts.py", line 59, in wrapper 
    4765 return self._call(rule, name, params, kwparams) 
    4766 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4767 File
    4768 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4769 packages/grako/contexts.py", line 458, in _call 
    4770 node, newpos, newstate = self._invoke_rule(rule, name, params, kwparams) 
    4771 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4772 File
    4773 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4774 packages/grako/contexts.py", line 497, in _invoke_rule 
    4775 rule(self) 
    4776 File
    4777 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4778 packages/chimerax/core/commands/_atomspec.py", line 105, in _atom_specifier_ 
    4779 self._error('no available options') 
    4780 File
    4781 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4782 packages/grako/contexts.py", line 430, in _error 
    4783 raise etype( 
    4784 grako.exceptions.FailedParse:   
    4785  
    4786 During handling of the above exception, another exception occurred: 
    4787  
    4788 Traceback (most recent call last): 
    4789 File "/Users/rathorei2/Library/Application
    4790 Support/ChimeraX/1.8/lib/python/site-
    4791 packages/chimerax/isolde/ui/restraints_tab/reference_model.py", line 96, in
    4792  
    4793 rsb.clicked.connect(lambda: self.apply_restraints(selected_only=True)) 
    4794 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4795 File "/Users/rathorei2/Library/Application
    4796 Support/ChimeraX/1.8/lib/python/site-
    4797 packages/chimerax/isolde/ui/restraints_tab/reference_model.py", line 405, in
    4798 apply_restraints 
    4799 run(self.session, cmd) 
    4800 File
    4801 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4802 packages/chimerax/core/commands/run.py", line 49, in run 
    4803 results = command.run(text, log=log, return_json=return_json) 
    4804 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4805 File
    4806 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4807 packages/chimerax/core/commands/cli.py", line 3166, in run 
    4808 prev_annos = self._process_positional_arguments() 
    4809 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4810 File
    4811 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4812 packages/chimerax/core/commands/cli.py", line 2926, in
    4813 _process_positional_arguments 
    4814 value, text = self._parse_arg(anno, text, session, False) 
    4815 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4816 File
    4817 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4818 packages/chimerax/core/commands/cli.py", line 2780, in _parse_arg 
    4819 value, replacement, rest = annotation.parse(text, session) 
    4820 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4821 File
    4822 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4823 packages/chimerax/core/commands/cli.py", line 550, in parse 
    4824 value, consumed, rest = self.annotation.parse(text, session) 
    4825 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4826 File
    4827 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4828 packages/chimerax/atomic/args.py", line 35, in parse 
    4829 aspec, text, rest = super().parse(text, session) 
    4830 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4831 File
    4832 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4833 packages/chimerax/core/commands/atomspec.py", line 119, in parse 
    4834 return cls._parse_quoted(text, session) 
    4835 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4836 File
    4837 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4838 packages/chimerax/core/commands/atomspec.py", line 160, in _parse_quoted 
    4839 offset = index_map[e.pos] 
    4840 ~~~~~~~~~^^^^^^^ 
    4841 IndexError: list index out of range 
    4842  
    4843 IndexError: list index out of range 
    4844  
    4845 File
    4846 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4847 packages/chimerax/core/commands/atomspec.py", line 160, in _parse_quoted 
    4848 offset = index_map[e.pos] 
    4849 ~~~~~~~~~^^^^^^^ 
    4850  
    4851 See log for complete Python traceback. 
    4852  
    4853 
    4854 "Adjust for PAE" is checked in the distance restraint options, but the
    4855 reference model has no PAE matrix assigned. This option has been ignored. 
    4856 
    4857 Traceback (most recent call last): 
    4858 File
    4859 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4860 packages/chimerax/core/commands/atomspec.py", line 153, in _parse_quoted 
    4861 ast = parser.parse(token, "atom_specifier", semantics=semantics) 
    4862 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4863 File
    4864 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4865 packages/grako/contexts.py", line 206, in parse 
    4866 result = rule() 
    4867 ^^^^^^ 
    4868 File
    4869 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4870 packages/grako/contexts.py", line 59, in wrapper 
    4871 return self._call(rule, name, params, kwparams) 
    4872 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4873 File
    4874 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4875 packages/grako/contexts.py", line 458, in _call 
    4876 node, newpos, newstate = self._invoke_rule(rule, name, params, kwparams) 
    4877 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4878 File
    4879 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4880 packages/grako/contexts.py", line 497, in _invoke_rule 
    4881 rule(self) 
    4882 File
    4883 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4884 packages/chimerax/core/commands/_atomspec.py", line 105, in _atom_specifier_ 
    4885 self._error('no available options') 
    4886 File
    4887 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4888 packages/grako/contexts.py", line 430, in _error 
    4889 raise etype( 
    4890 grako.exceptions.FailedParse:   
    4891  
    4892 During handling of the above exception, another exception occurred: 
    4893  
    4894 Traceback (most recent call last): 
    4895 File "/Users/rathorei2/Library/Application
    4896 Support/ChimeraX/1.8/lib/python/site-
    4897 packages/chimerax/isolde/ui/restraints_tab/reference_model.py", line 96, in
    4898  
    4899 rsb.clicked.connect(lambda: self.apply_restraints(selected_only=True)) 
    4900 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4901 File "/Users/rathorei2/Library/Application
    4902 Support/ChimeraX/1.8/lib/python/site-
    4903 packages/chimerax/isolde/ui/restraints_tab/reference_model.py", line 405, in
    4904 apply_restraints 
    4905 run(self.session, cmd) 
    4906 File
    4907 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4908 packages/chimerax/core/commands/run.py", line 49, in run 
    4909 results = command.run(text, log=log, return_json=return_json) 
    4910 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4911 File
    4912 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4913 packages/chimerax/core/commands/cli.py", line 3166, in run 
    4914 prev_annos = self._process_positional_arguments() 
    4915 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4916 File
    4917 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4918 packages/chimerax/core/commands/cli.py", line 2926, in
    4919 _process_positional_arguments 
    4920 value, text = self._parse_arg(anno, text, session, False) 
    4921 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4922 File
    4923 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4924 packages/chimerax/core/commands/cli.py", line 2780, in _parse_arg 
    4925 value, replacement, rest = annotation.parse(text, session) 
    4926 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4927 File
    4928 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4929 packages/chimerax/core/commands/cli.py", line 550, in parse 
    4930 value, consumed, rest = self.annotation.parse(text, session) 
    4931 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4932 File
    4933 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4934 packages/chimerax/atomic/args.py", line 35, in parse 
    4935 aspec, text, rest = super().parse(text, session) 
    4936 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4937 File
    4938 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4939 packages/chimerax/core/commands/atomspec.py", line 119, in parse 
    4940 return cls._parse_quoted(text, session) 
    4941 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    4942 File
    4943 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4944 packages/chimerax/core/commands/atomspec.py", line 160, in _parse_quoted 
    4945 offset = index_map[e.pos] 
    4946 ~~~~~~~~~^^^^^^^ 
    4947 IndexError: list index out of range 
    4948  
    4949 IndexError: list index out of range 
    4950  
    4951 File
    4952 "/Applications/ChimeraX-1.8-rc2024.05.23.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    4953 packages/chimerax/core/commands/atomspec.py", line 160, in _parse_quoted 
    4954 offset = index_map[e.pos] 
    4955 ~~~~~~~~~^^^^^^^ 
    4956  
    4957 See log for complete Python traceback. 
    4958  
    4959 
    4960 > isolde sim start /D:665-675
    4961 
    4962 ISOLDE: started sim 
    4963 
    4964 > isolde sim stop
    4965 
    4966 Sim termination reason: None 
    4967 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4968 chains... 
    4969 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    4970 standards. 
    4971 ISOLDE: stopped sim 
    4972 
    4973 > isolde sim start /G:53-65
    4974 
    4975 ISOLDE: started sim 
    4976 
    4977 > isolde sim stop
    4978 
    4979 Sim termination reason: None 
    4980 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4981 chains... 
    4982 ISOLDE: stopped sim 
    4983 
    4984 > isolde sim start /G:142-152
    4985 
    4986 ISOLDE: started sim 
    4987 
    4988 > isolde sim stop
    4989 
    4990 Sim termination reason: None 
    4991 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4992 chains... 
    4993 ISOLDE: stopped sim 
    4994 
    4995 > isolde sim start /G:74-84
    4996 
    4997 ISOLDE: started sim 
    4998 
    4999 > isolde sim stop
    5000 
    5001 Sim termination reason: None 
    5002 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5003 chains... 
    5004 ISOLDE: stopped sim 
    5005 
    5006 > isolde sim start /G:76-87
    5007 
    5008 ISOLDE: started sim 
    5009 
    5010 > isolde sim stop
    5011 
    5012 Sim termination reason: None 
    5013 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5014 chains... 
    5015 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    5016 standards. 
    5017 ISOLDE: stopped sim 
    5018 
    5019 > isolde sim start /D:599
    5020 
    5021 ISOLDE: started sim 
    5022 
    5023 > isolde sim stop
    5024 
    5025 Sim termination reason: None 
    5026 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5027 chains... 
    5028 ISOLDE: stopped sim 
    5029 
    5030 > isolde sim start /D:682
    5031 
    5032 ISOLDE: started sim 
    5033 
    5034 > isolde sim stop
    5035 
    5036 Sim termination reason: None 
    5037 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5038 chains... 
    5039 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    5040 standards. 
    5041 ISOLDE: stopped sim 
    5042 
    5043 > isolde sim start /C:763
    5044 
    5045 ISOLDE: started sim 
    5046 
    5047 > isolde sim stop
    5048 
    5049 Sim termination reason: None 
    5050 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5051 chains... 
    5052 ISOLDE: stopped sim 
    5053 
    5054 > isolde sim start /D:352
    5055 
    5056 ISOLDE: started sim 
    5057 
    5058 > isolde sim stop
    5059 
    5060 Sim termination reason: None 
    5061 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5062 chains... 
    5063 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    5064 standards. 
    5065 ISOLDE: stopped sim 
    5066 
    5067 > isolde sim start /B:395
    5068 
    5069 ISOLDE: started sim 
    5070 
    5071 > isolde sim pause
    5072 
    5073 > isolde sim resume
    5074 
    5075 > isolde sim stop
    5076 
    5077 Sim termination reason: None 
    5078 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5079 chains... 
    5080 ISOLDE: Corrected atom nomenclature of 1 residues in model #2.2 to IUPAC-IUB
    5081 standards. 
    5082 ISOLDE: stopped sim 
    5083 
    5084 > isolde sim start /B:707-714
    5085 
    5086 ISOLDE: started sim 
    5087 
    5088 > isolde sim stop
    5089 
    5090 Sim termination reason: None 
    5091 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5092 chains... 
    5093 ISOLDE: stopped sim 
    5094 
    5095 > isolde sim start /B:391-400
    5096 
    5097 ISOLDE: started sim 
    5098 
    5099 > isolde sim stop
    5100 
    5101 Sim termination reason: None 
    5102 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5103 chains... 
    5104 ISOLDE: stopped sim 
    5105 
    5106 > volume #2.1.1.1 level 4.694
    5107 
    5108 > isolde sim start /A:329
    5109 
    5110 ISOLDE: started sim 
    5111 
    5112 > isolde sim stop
    5113 
    5114 Sim termination reason: None 
    5115 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5116 chains... 
    5117 ISOLDE: stopped sim 
    5118 
    5119 > isolde sim start /C:392
    5120 
    5121 ISOLDE: started sim 
    5122 
    5123 > isolde sim stop
    5124 
    5125 Sim termination reason: None 
    5126 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5127 chains... 
    5128 ISOLDE: stopped sim 
    5129 
    5130 > isolde sim start /D:537
    5131 
    5132 ISOLDE: started sim 
    5133 
    5134 > isolde sim stop
    5135 
    5136 Sim termination reason: None 
    5137 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5138 chains... 
    5139 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    5140 standards. 
    5141 ISOLDE: stopped sim 
    5142 
    5143 > isolde sim start /B:604
    5144 
    5145 ISOLDE: started sim 
    5146 
    5147 > isolde sim stop
    5148 
    5149 Sim termination reason: None 
    5150 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5151 chains... 
    5152 ISOLDE: stopped sim 
    5153 
    5154 > volume #2.1.1.1 level 4.196
    5155 
    5156 > isolde sim start /A:254-263
    5157 
    5158 ISOLDE: started sim 
    5159 
    5160 > isolde sim stop
    5161 
    5162 Sim termination reason: None 
    5163 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5164 chains... 
    5165 ISOLDE: stopped sim 
    5166 
    5167 > isolde sim start /A:251-266
    5168 
    5169 ISOLDE: started sim 
    5170 
    5171 > volume #2.1.1.1 level 5.58
    5172 
    5173 > volume #2.1.1.1 level 4.694
    5174 
    5175 > isolde sim stop
    5176 
    5177 Sim termination reason: None 
    5178 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5179 chains... 
    5180 ISOLDE: Corrected atom nomenclature of 2 residues in model #2.2 to IUPAC-IUB
    5181 standards. 
    5182 ISOLDE: stopped sim 
    5183 
    5184 > isolde sim start /A:267-282
    5185 
    5186 ISOLDE: started sim 
    5187 
    5188 > isolde sim stop
    5189 
    5190 Sim termination reason: None 
    5191 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5192 chains... 
    5193 ISOLDE: stopped sim 
    5194 
    5195 > isolde sim start /E:348
    5196 
    5197 ISOLDE: started sim 
    5198 
    5199 > isolde sim stop
    5200 
    5201 Sim termination reason: None 
    5202 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5203 chains... 
    5204 ISOLDE: stopped sim 
    5205 
    5206 > isolde sim start /G:143
    5207 
    5208 ISOLDE: started sim 
    5209 
    5210 > isolde sim stop
    5211 
    5212 Sim termination reason: None 
    5213 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5214 chains... 
    5215 ISOLDE: stopped sim 
    5216 
    5217 > isolde sim start /D:346
    5218 
    5219 ISOLDE: started sim 
    5220 
    5221 > isolde sim stop
    5222 
    5223 Sim termination reason: None 
    5224 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5225 chains... 
    5226 ISOLDE: stopped sim 
    5227 
    5228 > isolde sim start /A:557
    5229 
    5230 ISOLDE: started sim 
    5231 
    5232 > isolde sim stop
    5233 
    5234 Sim termination reason: None 
    5235 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    5236 chains... 
    5237 ISOLDE: stopped sim 
     171[deleted to fit within ticket limits]
    5238172
    5239173> isolde sim start /B:333