Changes between Initial Version and Version 1 of Ticket #16128, comment 4


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Timestamp:
Oct 18, 2024, 5:33:42 PM (12 months ago)
Author:
Eric Pettersen

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  • Ticket #16128, comment 4

    initial v1  
    1 I don't there is a way to read them into ChimeraX as a trajectory without tediously prepending/appending MODEL/ENDMDL records to each file and then catting them all together.  Don't you have the trajectory output in some more concise format than PDB files?  ChimeraX can read Amber NetCDF, Charmm/NAMD DCD, Gromacs XTC and TRR format coordinate files, as per https://www.cgl.ucsf.edu/chimerax/docs/user/commands/open.html#trajectory
     1I don't think there is a way to read them into ChimeraX as a trajectory without tediously prepending/appending MODEL/ENDMDL records to each file and then catting them all together.  Don't you have the trajectory output in some more concise format than PDB files?  ChimeraX can read Amber NetCDF, Charmm/NAMD DCD, Gromacs XTC and TRR format coordinate files, as per https://www.cgl.ucsf.edu/chimerax/docs/user/commands/open.html#trajectory
    22
    33--Eric