Changes between Initial Version and Version 1 of Ticket #15874


Ignore:
Timestamp:
Sep 4, 2024, 9:11:55 AM (14 months ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #15874

    • Property Component Unassigned → Graphics
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Crash drawing frame

  • Ticket #15874 – Description

    initial v1  
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    30391601> #4,0.74418,-0.66791,-0.0091008,685.55,-0.59295,-0.65426,-0.46942,455.45,0.30758,0.35473,-0.88293,239.46
    30401602
    3041 > fitmap sel inMap #2
    3042 
    3043 Fit molecule
    3044 GeneID_79676110_protein_majorcapsidprotein_01eb3_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    3045 (#4) to map bas18_pp_b2_sh3.mrc (#2) using 2699 atoms 
    3046 average map value = 0.01457, steps = 84 
    3047 shifted from previous position = 1.85 
    3048 rotated from previous position = 0.025 degrees 
    3049 atoms outside contour = 2019, contour level = 0.020062 
    3050  
    3051 Position of
    3052 GeneID_79676110_protein_majorcapsidprotein_01eb3_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    3053 (#4) relative to bas18_pp_b2_sh3.mrc (#2) coordinates: 
    3054 Matrix rotation and translation 
    3055 0.74393823 -0.66818750 -0.00902424 686.80261191 
    3056 -0.59323065 -0.65414660 -0.46922241 456.26605189 
    3057 0.30762540 0.35442592 -0.88303396 240.55166052 
    3058 Axis 0.93004866 -0.35755499 0.08463991 
    3059 Axis point 0.00000000 335.22940966 168.55031293 
    3060 Rotation angle (degrees) 153.71742652 
    3061 Shift along axis 495.97991433 
    3062  
    3063 
    3064 > select clear
    3065 
    3066 > ui mousemode right zoom
    3067 
    3068 > ui mousemode right clip
    3069 
    3070 > save "/Users/rosheny/Desktop/Ph_D
    3071 > /PHAGE/fitting&segmentation/BAS18fitted.cxs" includeMaps true
    3072 
    3073 > ui mousemode right zoom
    3074 
    3075 > surface dust #2 size 17.1
    3076 
    3077 > open "/Users/rosheny/Desktop/Ph_D
    3078 > /PHAGE/alphafold/GeneID_79676109_protein_hypotheticalprotein_aaeab/GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb"
    3079 
    3080 Chain information for
    3081 GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    3082 #5 
    3083 --- 
    3084 Chain | Description 
    3085 A | No description available 
    3086  
    3087 
    3088 > select add #5
    3089 
    3090 1785 atoms, 1805 bonds, 234 residues, 1 model selected 
    3091 
    3092 > ui mousemode right "translate selected models"
    3093 
    3094 > view matrix models #5,1,0,0,709.03,0,1,0,285.97,0,0,1,-51.624
    3095 
    3096 > select clear
    3097 
    3098 > ui mousemode right zoom
    3099 
    3100 > select add #5
    3101 
    3102 1785 atoms, 1805 bonds, 234 residues, 1 model selected 
    3103 
    3104 > ui mousemode right "translate selected models"
    3105 
    3106 > view matrix models #5,1,0,0,603.94,0,1,0,396.74,0,0,1,267.75
    3107 
    3108 > view matrix models #5,1,0,0,596.1,0,1,0,491.6,0,0,1,335.6
    3109 
    3110 > view matrix models #5,1,0,0,616.06,0,1,0,534.15,0,0,1,230.91
    3111 
    3112 > view matrix models #5,1,0,0,629.58,0,1,0,523.39,0,0,1,239.11
    3113 
    3114 > select clear
    3115 
    3116 > select add #5
    3117 
    3118 1785 atoms, 1805 bonds, 234 residues, 1 model selected 
    3119 
    3120 > fitmap sel inMap #2
    3121 
    3122 Fit molecule
    3123 GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    3124 (#5) to map bas18_pp_b2_sh3.mrc (#2) using 1785 atoms 
    3125 average map value = 0.01228, steps = 184 
    3126 shifted from previous position = 9.06 
    3127 rotated from previous position = 40.4 degrees 
    3128 atoms outside contour = 1475, contour level = 0.020062 
    3129  
    3130 Position of
    3131 GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    3132 (#5) relative to bas18_pp_b2_sh3.mrc (#2) coordinates: 
    3133 Matrix rotation and translation 
    3134 0.86942553 0.06442083 0.48984611 630.17394657 
    3135 -0.28519421 0.87504077 0.39111114 521.06664833 
    3136 -0.40343961 -0.47974328 0.77915523 249.01440761 
    3137 Axis -0.67216341 0.68947686 -0.26984813 
    3138 Axis point 990.21138215 0.00000000 -842.05976502 
    3139 Rotation angle (degrees) 40.37590848 
    3140 Shift along axis -131.51254206 
    3141  
    3142 
    3143 > select clear
    3144 
    3145 > ui mousemode right zoom
    3146 
    3147 > select add #5
    3148 
    3149 1785 atoms, 1805 bonds, 234 residues, 1 model selected 
    3150 
    3151 > ui mousemode right "rotate selected models"
    3152 
    3153 > view matrix models
    3154 > #5,0.94623,0.28857,0.14623,631.42,-0.28988,0.95698,-0.012785,522.75,-0.14363,-0.030291,0.98917,247.56
    3155 
    3156 > select clear
    3157 
    3158 > ui mousemode right zoom
    3159 
    3160 > select add #5
    3161 
    3162 1785 atoms, 1805 bonds, 234 residues, 1 model selected 
    3163 
    3164 > ui mousemode right "rotate selected models"
    3165 
    3166 > view matrix models
    3167 > #5,0.53297,-0.36217,-0.7647,636.15,0.81682,0.45604,0.35331,519.47,0.22077,-0.81293,0.53889,249.06
    3168 
    3169 > ui mousemode right "translate selected models"
    3170 
    3171 > view matrix models
    3172 > #5,0.53297,-0.36217,-0.7647,614.08,0.81682,0.45604,0.35331,532.31,0.22077,-0.81293,0.53889,240.55
    3173 
    3174 > fitmap sel inMap #2
    3175 
    3176 Fit molecule
    3177 GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    3178 (#5) to map bas18_pp_b2_sh3.mrc (#2) using 1785 atoms 
    3179 average map value = 0.01133, steps = 92 
    3180 shifted from previous position = 3.09 
    3181 rotated from previous position = 10 degrees 
    3182 atoms outside contour = 1593, contour level = 0.020062 
    3183  
    3184 Position of
    3185 GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    3186 (#5) relative to bas18_pp_b2_sh3.mrc (#2) coordinates: 
    3187 Matrix rotation and translation 
    3188 0.54631391 -0.33404057 -0.76808724 615.69552630 
    3189 0.75291940 0.59761554 0.27562300 534.46135957 
    3190 0.36695161 -0.72888446 0.57799132 238.19210654 
    3191 Axis -0.53856303 -0.60854696 0.58276965 
    3192 Axis point -576.23139159 0.00000000 778.73292330 
    3193 Rotation angle (degrees) 68.84081179 
    3194 Shift along axis -518.02455246 
    3195  
    3196 
    3197 > ui mousemode right zoom
    3198 
    3199 > select clear
    3200 
    3201 > ui mousemode right "translate selected models"
    3202 
    3203 > select add #5
    3204 
    3205 1785 atoms, 1805 bonds, 234 residues, 1 model selected 
    3206 
    3207 > view matrix models
    3208 > #5,0.54631,-0.33404,-0.76809,611.08,0.75292,0.59762,0.27562,533.76,0.36695,-0.72888,0.57799,228.58
    3209 
    3210 > fitmap sel inMap #2
    3211 
    3212 Fit molecule
    3213 GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    3214 (#5) to map bas18_pp_b2_sh3.mrc (#2) using 1785 atoms 
    3215 average map value = 0.01092, steps = 136 
    3216 shifted from previous position = 6.41 
    3217 rotated from previous position = 11.8 degrees 
    3218 atoms outside contour = 1569, contour level = 0.020062 
    3219  
    3220 Position of
    3221 GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    3222 (#5) relative to bas18_pp_b2_sh3.mrc (#2) coordinates: 
    3223 Matrix rotation and translation 
    3224 0.51425207 -0.50465179 -0.69344890 613.58464479 
    3225 0.78342667 0.60542024 0.14038868 528.61085910 
    3226 0.34898060 -0.61546153 0.70669629 227.67322509 
    3227 Axis -0.41500705 -0.57235626 0.70723225 
    3228 Axis point 42.41811609 849.22621966 0.00000000 
    3229 Rotation angle (degrees) 65.59497508 
    3230 Shift along axis -396.17784061 
    3231  
    3232 
    3233 > select #2
    3234 
    3235 3 models selected 
    3236 
    3237 > ui mousemode right zoom
    3238 
    3239 > select clear
    3240 
    3241 > select add #5
    3242 
    3243 1785 atoms, 1805 bonds, 234 residues, 1 model selected 
    3244 
    3245 > ui mousemode right "rotate selected models"
    3246 
    3247 > view matrix models
    3248 > #5,0.53666,-0.52456,-0.66093,613.42,0.79054,0.58644,0.17646,528.45,0.29503,-0.6172,0.7294,227.67
    3249 
    3250 > view matrix models
    3251 > #5,0.182,-0.41434,-0.89174,614.96,0.98281,0.048045,0.17826,528.27,-0.031018,-0.90885,0.41596,229.63
    3252 
    3253 > fitmap sel inMap #2
    3254 
    3255 Fit molecule
    3256 GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    3257 (#5) to map bas18_pp_b2_sh3.mrc (#2) using 1785 atoms 
    3258 average map value = 0.0114, steps = 104 
    3259 shifted from previous position = 2.63 
    3260 rotated from previous position = 24.9 degrees 
    3261 atoms outside contour = 1534, contour level = 0.020062 
    3262  
    3263 Position of
    3264 GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    3265 (#5) relative to bas18_pp_b2_sh3.mrc (#2) coordinates: 
    3266 Matrix rotation and translation 
    3267 0.34539991 -0.02253347 -0.93818503 614.11369930 
    3268 0.93822335 0.03053104 0.34468072 529.84490603 
    3269 0.02087691 -0.99927979 0.03168685 230.36931387 
    3270 Axis -0.70354943 -0.50205901 0.50294626 
    3271 Axis point 0.00000000 319.78922544 210.29398453 
    3272 Rotation angle (degrees) 107.22897475 
    3273 Shift along axis -582.20936856 
    3274  
    3275 
    3276 > ui mousemode right zoom
    3277 
    3278 > select clear
    3279 
    3280 > select add #5
    3281 
    3282 1785 atoms, 1805 bonds, 234 residues, 1 model selected 
    3283 
    3284 > select subtract #5
    3285 
    3286 Nothing selected 
    3287 
    3288 > select add #5
    3289 
    3290 1785 atoms, 1805 bonds, 234 residues, 1 model selected 
    3291 
    3292 > hide #5 models
    3293 
    3294 > select subtract #5
    3295 
    3296 Nothing selected 
    3297 
    3298 > close #5
    3299 
    3300 > save "/Users/rosheny/Desktop/Ph_D
    3301 > /PHAGE/fitting&segmentation/BAS18fitted.cxs" includeMaps true
    3302 
    3303 ——— End of log from Thu Apr 18 13:23:07 2024 ———
    3304 
    3305 opened ChimeraX session 
    3306 
    3307 > open "/Users/rosheny/Desktop/Ph_D /PHAGE/fitting&segmentation/BAS18_ASU.pdb"
    3308 
    3309 Chain information for BAS18_ASU.pdb 
    3310 --- 
    3311 Chain | Description 
    3312 5.1/A 5.2/A 5.3/A 5.4/A 5.5/A 5.6/A 5.7/A 5.8/A 5.9/A 5.10/A 5.11/A 5.12/A 5.13/A | No description available 
    3313  
    3314 
    3315 > hide #!3 models
    3316 
    3317 > close #1
    3318 
    3319 > show #!3 models
    3320 
    3321 > hide #!3 models
    3322 
    3323 > show #!3 models
    3324 
    3325 > hide #!3 models
    3326 
    3327 > show #!3 models
    3328 
    3329 > hide #3.1 models
    3330 
    3331 > hide #3.2 models
    3332 
    3333 > hide #3.3 models
    3334 
    3335 > hide #3.4 models
    3336 
    3337 > hide #3.5 models
    3338 
    3339 > hide #3.6 models
    3340 
    3341 > show #3.1 models
    3342 
    3343 > show #3.2 models
    3344 
    3345 > show #3.3 models
    3346 
    3347 > show #3.4 models
    3348 
    3349 > show #3.5 models
    3350 
    3351 > show #3.6 models
    3352 
    3353 > select add #5
    3354 
    3355 35087 atoms, 35607 bonds, 4758 residues, 14 models selected 
    3356 
    3357 > ui mousemode right "translate selected models"
    3358 
    3359 > view matrix models #5,1,0,0,50.993,0,1,0,33.674,0,0,1,106.98
    3360 
    3361 > ui mousemode right "rotate selected models"
    3362 
    3363 > view matrix models
    3364 > #5,0.90656,0.3849,0.1732,-132.99,-0.24247,0.81082,-0.53272,417.62,-0.34548,0.44094,0.82838,138.86
    3365 
    3366 > ui mousemode right "translate selected models"
    3367 
    3368 > view matrix models
    3369 > #5,0.90656,0.3849,0.1732,-136.73,-0.24247,0.81082,-0.53272,408.62,-0.34548,0.44094,0.82838,125.62
    3370 
    3371 > ui tool show "Fit in Map"
    3372 
    3373 > fitmap sel inMap #2
    3374 
    3375 Fit molecules BAS18_ASU.pdb (#5.1), BAS18_ASU.pdb (#5.2), BAS18_ASU.pdb
    3376 (#5.3), BAS18_ASU.pdb (#5.4), BAS18_ASU.pdb (#5.5), BAS18_ASU.pdb (#5.6),
    3377 BAS18_ASU.pdb (#5.7), BAS18_ASU.pdb (#5.8), BAS18_ASU.pdb (#5.9),
    3378 BAS18_ASU.pdb (#5.10), BAS18_ASU.pdb (#5.11), BAS18_ASU.pdb (#5.12),
    3379 BAS18_ASU.pdb (#5.13) to map bas18_pp_b2_sh3.mrc (#2) using 35087 atoms 
    3380 average map value = 0.0116, steps = 152 
    3381 shifted from previous position = 13.5 
    3382 rotated from previous position = 17.7 degrees 
    3383 atoms outside contour = 28987, contour level = 0.020062 
    3384  
    3385 Position of BAS18_ASU.pdb (#5.1) relative to bas18_pp_b2_sh3.mrc (#2)
    3386 coordinates: 
    3387 Matrix rotation and translation 
    3388 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3389 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3390 0.28511769 0.08944525 0.95430993 -227.29871869 
    3391 Axis 0.32154772 -0.92744534 0.19092463 
    3392 Axis point 851.10781454 0.00000000 328.24944319 
    3393 Rotation angle (degrees) 17.71508108 
    3394 Shift along axis 1.93497566 
    3395  
    3396 Position of BAS18_ASU.pdb (#5.2) relative to bas18_pp_b2_sh3.mrc (#2)
    3397 coordinates: 
    3398 Matrix rotation and translation 
    3399 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3400 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3401 0.28511769 0.08944525 0.95430993 -227.29871869 
    3402 Axis 0.32154772 -0.92744534 0.19092463 
    3403 Axis point 851.10781454 0.00000000 328.24944319 
    3404 Rotation angle (degrees) 17.71508108 
    3405 Shift along axis 1.93497566 
    3406  
    3407 Position of BAS18_ASU.pdb (#5.3) relative to bas18_pp_b2_sh3.mrc (#2)
    3408 coordinates: 
    3409 Matrix rotation and translation 
    3410 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3411 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3412 0.28511769 0.08944525 0.95430993 -227.29871869 
    3413 Axis 0.32154772 -0.92744534 0.19092463 
    3414 Axis point 851.10781454 0.00000000 328.24944319 
    3415 Rotation angle (degrees) 17.71508108 
    3416 Shift along axis 1.93497566 
    3417  
    3418 Position of BAS18_ASU.pdb (#5.4) relative to bas18_pp_b2_sh3.mrc (#2)
    3419 coordinates: 
    3420 Matrix rotation and translation 
    3421 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3422 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3423 0.28511769 0.08944525 0.95430993 -227.29871869 
    3424 Axis 0.32154772 -0.92744534 0.19092463 
    3425 Axis point 851.10781454 0.00000000 328.24944319 
    3426 Rotation angle (degrees) 17.71508108 
    3427 Shift along axis 1.93497566 
    3428  
    3429 Position of BAS18_ASU.pdb (#5.5) relative to bas18_pp_b2_sh3.mrc (#2)
    3430 coordinates: 
    3431 Matrix rotation and translation 
    3432 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3433 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3434 0.28511769 0.08944525 0.95430993 -227.29871869 
    3435 Axis 0.32154772 -0.92744534 0.19092463 
    3436 Axis point 851.10781454 0.00000000 328.24944319 
    3437 Rotation angle (degrees) 17.71508108 
    3438 Shift along axis 1.93497566 
    3439  
    3440 Position of BAS18_ASU.pdb (#5.6) relative to bas18_pp_b2_sh3.mrc (#2)
    3441 coordinates: 
    3442 Matrix rotation and translation 
    3443 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3444 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3445 0.28511769 0.08944525 0.95430993 -227.29871869 
    3446 Axis 0.32154772 -0.92744534 0.19092463 
    3447 Axis point 851.10781454 0.00000000 328.24944319 
    3448 Rotation angle (degrees) 17.71508108 
    3449 Shift along axis 1.93497566 
    3450  
    3451 Position of BAS18_ASU.pdb (#5.7) relative to bas18_pp_b2_sh3.mrc (#2)
    3452 coordinates: 
    3453 Matrix rotation and translation 
    3454 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3455 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3456 0.28511769 0.08944525 0.95430993 -227.29871869 
    3457 Axis 0.32154772 -0.92744534 0.19092463 
    3458 Axis point 851.10781454 0.00000000 328.24944319 
    3459 Rotation angle (degrees) 17.71508108 
    3460 Shift along axis 1.93497566 
    3461  
    3462 Position of BAS18_ASU.pdb (#5.8) relative to bas18_pp_b2_sh3.mrc (#2)
    3463 coordinates: 
    3464 Matrix rotation and translation 
    3465 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3466 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3467 0.28511769 0.08944525 0.95430993 -227.29871869 
    3468 Axis 0.32154772 -0.92744534 0.19092463 
    3469 Axis point 851.10781454 0.00000000 328.24944319 
    3470 Rotation angle (degrees) 17.71508108 
    3471 Shift along axis 1.93497566 
    3472  
    3473 Position of BAS18_ASU.pdb (#5.9) relative to bas18_pp_b2_sh3.mrc (#2)
    3474 coordinates: 
    3475 Matrix rotation and translation 
    3476 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3477 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3478 0.28511769 0.08944525 0.95430993 -227.29871869 
    3479 Axis 0.32154772 -0.92744534 0.19092463 
    3480 Axis point 851.10781454 0.00000000 328.24944319 
    3481 Rotation angle (degrees) 17.71508108 
    3482 Shift along axis 1.93497566 
    3483  
    3484 Position of BAS18_ASU.pdb (#5.10) relative to bas18_pp_b2_sh3.mrc (#2)
    3485 coordinates: 
    3486 Matrix rotation and translation 
    3487 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3488 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3489 0.28511769 0.08944525 0.95430993 -227.29871869 
    3490 Axis 0.32154772 -0.92744534 0.19092463 
    3491 Axis point 851.10781454 0.00000000 328.24944319 
    3492 Rotation angle (degrees) 17.71508108 
    3493 Shift along axis 1.93497566 
    3494  
    3495 Position of BAS18_ASU.pdb (#5.11) relative to bas18_pp_b2_sh3.mrc (#2)
    3496 coordinates: 
    3497 Matrix rotation and translation 
    3498 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3499 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3500 0.28511769 0.08944525 0.95430993 -227.29871869 
    3501 Axis 0.32154772 -0.92744534 0.19092463 
    3502 Axis point 851.10781454 0.00000000 328.24944319 
    3503 Rotation angle (degrees) 17.71508108 
    3504 Shift along axis 1.93497566 
    3505  
    3506 Position of BAS18_ASU.pdb (#5.12) relative to bas18_pp_b2_sh3.mrc (#2)
    3507 coordinates: 
    3508 Matrix rotation and translation 
    3509 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3510 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3511 0.28511769 0.08944525 0.95430993 -227.29871869 
    3512 Axis 0.32154772 -0.92744534 0.19092463 
    3513 Axis point 851.10781454 0.00000000 328.24944319 
    3514 Rotation angle (degrees) 17.71508108 
    3515 Shift along axis 1.93497566 
    3516  
    3517 Position of BAS18_ASU.pdb (#5.13) relative to bas18_pp_b2_sh3.mrc (#2)
    3518 coordinates: 
    3519 Matrix rotation and translation 
    3520 0.95748417 -0.07223634 -0.27929550 128.48633720 
    3521 0.04395420 0.99336874 -0.10623827 -4.33169422 
    3522 0.28511769 0.08944525 0.95430993 -227.29871869 
    3523 Axis 0.32154772 -0.92744534 0.19092463 
    3524 Axis point 851.10781454 0.00000000 328.24944319 
    3525 Rotation angle (degrees) 17.71508108 
    3526 Shift along axis 1.93497566 
    3527  
    3528 
    3529 > select clear
    3530 
    3531 > ui mousemode right "translate selected models"
    3532 
    3533 > ui mousemode right "rotate selected models"
    3534 
    3535 > select add #5
    3536 
    3537 35087 atoms, 35607 bonds, 4758 residues, 14 models selected 
    3538 
    3539 > view matrix models
    3540 > #5,0.77494,0.60985,0.16599,-168.15,-0.14265,0.42462,-0.89406,628.8,-0.61573,0.66916,0.41605,273.91
    3541 
    3542 > ui mousemode right "translate selected models"
    3543 
    3544 > view matrix models
    3545 > #5,0.77494,0.60985,0.16599,-138.89,-0.14265,0.42462,-0.89406,583.73,-0.61573,0.66916,0.41605,309.2
    3546 
    3547 > fitmap sel inMap #2
    3548 
    3549 Fit molecules BAS18_ASU.pdb (#5.1), BAS18_ASU.pdb (#5.2), BAS18_ASU.pdb
    3550 (#5.3), BAS18_ASU.pdb (#5.4), BAS18_ASU.pdb (#5.5), BAS18_ASU.pdb (#5.6),
    3551 BAS18_ASU.pdb (#5.7), BAS18_ASU.pdb (#5.8), BAS18_ASU.pdb (#5.9),
    3552 BAS18_ASU.pdb (#5.10), BAS18_ASU.pdb (#5.11), BAS18_ASU.pdb (#5.12),
    3553 BAS18_ASU.pdb (#5.13) to map bas18_pp_b2_sh3.mrc (#2) using 35087 atoms 
    3554 average map value = 0.01538, steps = 144 
    3555 shifted from previous position = 16.8 
    3556 rotated from previous position = 11.5 degrees 
    3557 atoms outside contour = 24010, contour level = 0.020062 
    3558  
    3559 Position of BAS18_ASU.pdb (#5.1) relative to bas18_pp_b2_sh3.mrc (#2)
    3560 coordinates: 
    3561 Matrix rotation and translation 
    3562 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3563 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3564 0.45250967 0.14292388 0.88023165 -353.88605391 
    3565 Axis 0.34866600 -0.90745362 0.23443539 
    3566 Axis point 883.21195090 0.00000000 360.98131232 
    3567 Rotation angle (degrees) 29.15953877 
    3568 Shift along axis 10.84205321 
    3569  
    3570 Position of BAS18_ASU.pdb (#5.2) relative to bas18_pp_b2_sh3.mrc (#2)
    3571 coordinates: 
    3572 Matrix rotation and translation 
    3573 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3574 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3575 0.45250967 0.14292388 0.88023165 -353.88605391 
    3576 Axis 0.34866600 -0.90745362 0.23443539 
    3577 Axis point 883.21195090 0.00000000 360.98131232 
    3578 Rotation angle (degrees) 29.15953877 
    3579 Shift along axis 10.84205321 
    3580  
    3581 Position of BAS18_ASU.pdb (#5.3) relative to bas18_pp_b2_sh3.mrc (#2)
    3582 coordinates: 
    3583 Matrix rotation and translation 
    3584 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3585 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3586 0.45250967 0.14292388 0.88023165 -353.88605391 
    3587 Axis 0.34866600 -0.90745362 0.23443539 
    3588 Axis point 883.21195090 0.00000000 360.98131232 
    3589 Rotation angle (degrees) 29.15953877 
    3590 Shift along axis 10.84205321 
    3591  
    3592 Position of BAS18_ASU.pdb (#5.4) relative to bas18_pp_b2_sh3.mrc (#2)
    3593 coordinates: 
    3594 Matrix rotation and translation 
    3595 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3596 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3597 0.45250967 0.14292388 0.88023165 -353.88605391 
    3598 Axis 0.34866600 -0.90745362 0.23443539 
    3599 Axis point 883.21195090 0.00000000 360.98131232 
    3600 Rotation angle (degrees) 29.15953877 
    3601 Shift along axis 10.84205321 
    3602  
    3603 Position of BAS18_ASU.pdb (#5.5) relative to bas18_pp_b2_sh3.mrc (#2)
    3604 coordinates: 
    3605 Matrix rotation and translation 
    3606 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3607 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3608 0.45250967 0.14292388 0.88023165 -353.88605391 
    3609 Axis 0.34866600 -0.90745362 0.23443539 
    3610 Axis point 883.21195090 0.00000000 360.98131232 
    3611 Rotation angle (degrees) 29.15953877 
    3612 Shift along axis 10.84205321 
    3613  
    3614 Position of BAS18_ASU.pdb (#5.6) relative to bas18_pp_b2_sh3.mrc (#2)
    3615 coordinates: 
    3616 Matrix rotation and translation 
    3617 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3618 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3619 0.45250967 0.14292388 0.88023165 -353.88605391 
    3620 Axis 0.34866600 -0.90745362 0.23443539 
    3621 Axis point 883.21195090 0.00000000 360.98131232 
    3622 Rotation angle (degrees) 29.15953877 
    3623 Shift along axis 10.84205321 
    3624  
    3625 Position of BAS18_ASU.pdb (#5.7) relative to bas18_pp_b2_sh3.mrc (#2)
    3626 coordinates: 
    3627 Matrix rotation and translation 
    3628 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3629 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3630 0.45250967 0.14292388 0.88023165 -353.88605391 
    3631 Axis 0.34866600 -0.90745362 0.23443539 
    3632 Axis point 883.21195090 0.00000000 360.98131232 
    3633 Rotation angle (degrees) 29.15953877 
    3634 Shift along axis 10.84205321 
    3635  
    3636 Position of BAS18_ASU.pdb (#5.8) relative to bas18_pp_b2_sh3.mrc (#2)
    3637 coordinates: 
    3638 Matrix rotation and translation 
    3639 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3640 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3641 0.45250967 0.14292388 0.88023165 -353.88605391 
    3642 Axis 0.34866600 -0.90745362 0.23443539 
    3643 Axis point 883.21195090 0.00000000 360.98131232 
    3644 Rotation angle (degrees) 29.15953877 
    3645 Shift along axis 10.84205321 
    3646  
    3647 Position of BAS18_ASU.pdb (#5.9) relative to bas18_pp_b2_sh3.mrc (#2)
    3648 coordinates: 
    3649 Matrix rotation and translation 
    3650 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3651 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3652 0.45250967 0.14292388 0.88023165 -353.88605391 
    3653 Axis 0.34866600 -0.90745362 0.23443539 
    3654 Axis point 883.21195090 0.00000000 360.98131232 
    3655 Rotation angle (degrees) 29.15953877 
    3656 Shift along axis 10.84205321 
    3657  
    3658 Position of BAS18_ASU.pdb (#5.10) relative to bas18_pp_b2_sh3.mrc (#2)
    3659 coordinates: 
    3660 Matrix rotation and translation 
    3661 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3662 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3663 0.45250967 0.14292388 0.88023165 -353.88605391 
    3664 Axis 0.34866600 -0.90745362 0.23443539 
    3665 Axis point 883.21195090 0.00000000 360.98131232 
    3666 Rotation angle (degrees) 29.15953877 
    3667 Shift along axis 10.84205321 
    3668  
    3669 Position of BAS18_ASU.pdb (#5.11) relative to bas18_pp_b2_sh3.mrc (#2)
    3670 coordinates: 
    3671 Matrix rotation and translation 
    3672 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3673 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3674 0.45250967 0.14292388 0.88023165 -353.88605391 
    3675 Axis 0.34866600 -0.90745362 0.23443539 
    3676 Axis point 883.21195090 0.00000000 360.98131232 
    3677 Rotation angle (degrees) 29.15953877 
    3678 Shift along axis 10.84205321 
    3679  
    3680 Position of BAS18_ASU.pdb (#5.12) relative to bas18_pp_b2_sh3.mrc (#2)
    3681 coordinates: 
    3682 Matrix rotation and translation 
    3683 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3684 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3685 0.45250967 0.14292388 0.88023165 -353.88605391 
    3686 Axis 0.34866600 -0.90745362 0.23443539 
    3687 Axis point 883.21195090 0.00000000 360.98131232 
    3688 Rotation angle (degrees) 29.15953877 
    3689 Shift along axis 10.84205321 
    3690  
    3691 Position of BAS18_ASU.pdb (#5.13) relative to bas18_pp_b2_sh3.mrc (#2)
    3692 coordinates: 
    3693 Matrix rotation and translation 
    3694 0.88867313 -0.15432532 -0.43179135 257.97408744 
    3695 0.07412873 0.97762798 -0.19684631 -4.25220376 
    3696 0.45250967 0.14292388 0.88023165 -353.88605391 
    3697 Axis 0.34866600 -0.90745362 0.23443539 
    3698 Axis point 883.21195090 0.00000000 360.98131232 
    3699 Rotation angle (degrees) 29.15953877 
    3700 Shift along axis 10.84205321 
    3701  
    3702 
    3703 > select clear
    3704 
    3705 > select add #5
    3706 
    3707 35087 atoms, 35607 bonds, 4758 residues, 14 models selected 
    3708 
    3709 > view matrix models
    3710 > #5,0.77494,0.60985,0.16599,-137.82,-0.14265,0.42462,-0.89406,582.16,-0.61573,0.66916,0.41605,309.52
    3711 
    3712 > fitmap sel inMap #2
    3713 
    3714 Fit molecules BAS18_ASU.pdb (#5.1), BAS18_ASU.pdb (#5.2), BAS18_ASU.pdb
    3715 (#5.3), BAS18_ASU.pdb (#5.4), BAS18_ASU.pdb (#5.5), BAS18_ASU.pdb (#5.6),
    3716 BAS18_ASU.pdb (#5.7), BAS18_ASU.pdb (#5.8), BAS18_ASU.pdb (#5.9),
    3717 BAS18_ASU.pdb (#5.10), BAS18_ASU.pdb (#5.11), BAS18_ASU.pdb (#5.12),
    3718 BAS18_ASU.pdb (#5.13) to map bas18_pp_b2_sh3.mrc (#2) using 35087 atoms 
    3719 average map value = 0.01538, steps = 52 
    3720 shifted from previous position = 1.93 
    3721 rotated from previous position = 0.00871 degrees 
    3722 atoms outside contour = 24027, contour level = 0.020062 
    3723  
    3724 Position of BAS18_ASU.pdb (#5.1) relative to bas18_pp_b2_sh3.mrc (#2)
    3725 coordinates: 
    3726 Matrix rotation and translation 
    3727 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3728 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3729 0.45250396 0.14307426 0.88021016 -355.67921552 
    3730 Axis 0.34893346 -0.90737499 0.23434179 
    3731 Axis point 886.29694697 0.00000000 358.62661962 
    3732 Rotation angle (degrees) 29.16152089 
    3733 Shift along axis 10.30048712 
    3734  
    3735 Position of BAS18_ASU.pdb (#5.2) relative to bas18_pp_b2_sh3.mrc (#2)
    3736 coordinates: 
    3737 Matrix rotation and translation 
    3738 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3739 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3740 0.45250396 0.14307426 0.88021016 -355.67921552 
    3741 Axis 0.34893346 -0.90737499 0.23434179 
    3742 Axis point 886.29694697 0.00000000 358.62661962 
    3743 Rotation angle (degrees) 29.16152089 
    3744 Shift along axis 10.30048712 
    3745  
    3746 Position of BAS18_ASU.pdb (#5.3) relative to bas18_pp_b2_sh3.mrc (#2)
    3747 coordinates: 
    3748 Matrix rotation and translation 
    3749 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3750 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3751 0.45250396 0.14307426 0.88021016 -355.67921552 
    3752 Axis 0.34893346 -0.90737499 0.23434179 
    3753 Axis point 886.29694697 0.00000000 358.62661962 
    3754 Rotation angle (degrees) 29.16152089 
    3755 Shift along axis 10.30048712 
    3756  
    3757 Position of BAS18_ASU.pdb (#5.4) relative to bas18_pp_b2_sh3.mrc (#2)
    3758 coordinates: 
    3759 Matrix rotation and translation 
    3760 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3761 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3762 0.45250396 0.14307426 0.88021016 -355.67921552 
    3763 Axis 0.34893346 -0.90737499 0.23434179 
    3764 Axis point 886.29694697 0.00000000 358.62661962 
    3765 Rotation angle (degrees) 29.16152089 
    3766 Shift along axis 10.30048712 
    3767  
    3768 Position of BAS18_ASU.pdb (#5.5) relative to bas18_pp_b2_sh3.mrc (#2)
    3769 coordinates: 
    3770 Matrix rotation and translation 
    3771 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3772 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3773 0.45250396 0.14307426 0.88021016 -355.67921552 
    3774 Axis 0.34893346 -0.90737499 0.23434179 
    3775 Axis point 886.29694697 0.00000000 358.62661962 
    3776 Rotation angle (degrees) 29.16152089 
    3777 Shift along axis 10.30048712 
    3778  
    3779 Position of BAS18_ASU.pdb (#5.6) relative to bas18_pp_b2_sh3.mrc (#2)
    3780 coordinates: 
    3781 Matrix rotation and translation 
    3782 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3783 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3784 0.45250396 0.14307426 0.88021016 -355.67921552 
    3785 Axis 0.34893346 -0.90737499 0.23434179 
    3786 Axis point 886.29694697 0.00000000 358.62661962 
    3787 Rotation angle (degrees) 29.16152089 
    3788 Shift along axis 10.30048712 
    3789  
    3790 Position of BAS18_ASU.pdb (#5.7) relative to bas18_pp_b2_sh3.mrc (#2)
    3791 coordinates: 
    3792 Matrix rotation and translation 
    3793 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3794 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3795 0.45250396 0.14307426 0.88021016 -355.67921552 
    3796 Axis 0.34893346 -0.90737499 0.23434179 
    3797 Axis point 886.29694697 0.00000000 358.62661962 
    3798 Rotation angle (degrees) 29.16152089 
    3799 Shift along axis 10.30048712 
    3800  
    3801 Position of BAS18_ASU.pdb (#5.8) relative to bas18_pp_b2_sh3.mrc (#2)
    3802 coordinates: 
    3803 Matrix rotation and translation 
    3804 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3805 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3806 0.45250396 0.14307426 0.88021016 -355.67921552 
    3807 Axis 0.34893346 -0.90737499 0.23434179 
    3808 Axis point 886.29694697 0.00000000 358.62661962 
    3809 Rotation angle (degrees) 29.16152089 
    3810 Shift along axis 10.30048712 
    3811  
    3812 Position of BAS18_ASU.pdb (#5.9) relative to bas18_pp_b2_sh3.mrc (#2)
    3813 coordinates: 
    3814 Matrix rotation and translation 
    3815 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3816 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3817 0.45250396 0.14307426 0.88021016 -355.67921552 
    3818 Axis 0.34893346 -0.90737499 0.23434179 
    3819 Axis point 886.29694697 0.00000000 358.62661962 
    3820 Rotation angle (degrees) 29.16152089 
    3821 Shift along axis 10.30048712 
    3822  
    3823 Position of BAS18_ASU.pdb (#5.10) relative to bas18_pp_b2_sh3.mrc (#2)
    3824 coordinates: 
    3825 Matrix rotation and translation 
    3826 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3827 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3828 0.45250396 0.14307426 0.88021016 -355.67921552 
    3829 Axis 0.34893346 -0.90737499 0.23434179 
    3830 Axis point 886.29694697 0.00000000 358.62661962 
    3831 Rotation angle (degrees) 29.16152089 
    3832 Shift along axis 10.30048712 
    3833  
    3834 Position of BAS18_ASU.pdb (#5.11) relative to bas18_pp_b2_sh3.mrc (#2)
    3835 coordinates: 
    3836 Matrix rotation and translation 
    3837 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3838 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3839 0.45250396 0.14307426 0.88021016 -355.67921552 
    3840 Axis 0.34893346 -0.90737499 0.23434179 
    3841 Axis point 886.29694697 0.00000000 358.62661962 
    3842 Rotation angle (degrees) 29.16152089 
    3843 Shift along axis 10.30048712 
    3844  
    3845 Position of BAS18_ASU.pdb (#5.12) relative to bas18_pp_b2_sh3.mrc (#2)
    3846 coordinates: 
    3847 Matrix rotation and translation 
    3848 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3849 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3850 0.45250396 0.14307426 0.88021016 -355.67921552 
    3851 Axis 0.34893346 -0.90737499 0.23434179 
    3852 Axis point 886.29694697 0.00000000 358.62661962 
    3853 Rotation angle (degrees) 29.16152089 
    3854 Shift along axis 10.30048712 
    3855  
    3856 Position of BAS18_ASU.pdb (#5.13) relative to bas18_pp_b2_sh3.mrc (#2)
    3857 coordinates: 
    3858 Matrix rotation and translation 
    3859 0.88868197 -0.15431941 -0.43177526 257.10111798 
    3860 0.07405759 0.97760691 -0.19697766 -4.34198755 
    3861 0.45250396 0.14307426 0.88021016 -355.67921552 
    3862 Axis 0.34893346 -0.90737499 0.23434179 
    3863 Axis point 886.29694697 0.00000000 358.62661962 
    3864 Rotation angle (degrees) 29.16152089 
    3865 Shift along axis 10.30048712 
    3866  
    3867 
    3868 > select clear
    3869 
    3870 > ui mousemode right clip
    3871 
    3872 > ui mousemode right "translate selected models"
    3873 
    3874 > ui mousemode right zoom
    3875 
    3876 > ui mousemode right "translate selected models"
    3877 
    3878 > transparency 50
    3879 
    3880 > transparency 0
    3881 
    3882 > lighting soft
    3883 
    3884 > lighting full
    3885 
    3886 > transparency 50
    3887 
    3888 > transparency 0
    3889 
    3890 > lighting soft
    3891 
    3892 > color bypolymer
    3893 
    3894 > save "/Users/rosheny/Desktop/Ph_D
    3895 > /PHAGE/fitting&segmentation/BAS18fitted.cxs" includeMaps true
    3896 
    3897 ——— End of log from Fri Apr 19 04:24:23 2024 ———
    3898 
    3899 opened ChimeraX session 
    3900 
    3901 > hide #4 models
    3902 
    3903 > show #4 models
    3904 
    3905 > select add #3
    3906 
    3907 16194 atoms, 16434 bonds, 2196 residues, 7 models selected 
    3908 
    3909 > select add #4
    3910 
    3911 18893 atoms, 19173 bonds, 2562 residues, 8 models selected 
    3912 
    3913 > select add #5
    3914 
    3915 53980 atoms, 54780 bonds, 7320 residues, 22 models selected 
    3916 
    3917 > volume zone #2 nearAtoms sel range 2 newMap true
    3918 
    3919 Opened bas18_pp_b2_sh3.mrc zone as #1, grid size 504,504,504, pixel 1.71,
    3920 shown at step 1, values float32 
    3921 
    3922 > select clear
    3923 
    3924 > hide #!1 models
    3925 
    3926 > show #!2 models
    3927 
    3928 > hide #!5 models
    3929 
    3930 > hide #4 models
    3931 
    3932 > hide #!3 models
    3933 
    3934 > hide #!2 models
    3935 
    3936 > show #!1 models
    3937 
    3938 > hide #!1 models
    3939 
    3940 > show #!2 models
    3941 
    3942 > show #!1 models
    3943 
    3944 > volume subtract #1,2
    3945 
    3946 Opened volume difference as #6, grid size 504,504,504, pixel 1.71, shown at
    3947 step 1, values float32 
    3948 
    3949 > volume #6 level 0.001264
    3950 
    3951 > surface dust #6 size 17.1
    3952 
    3953 > ui mousemode right zoom
    3954 
    3955 > volume #6 level -0.005207
    3956 
    3957 > volume #6 level 0.00373
    3958 
    3959 > volume #6 level -0.0002764
    3960 
    3961 > volume #6 level 0.001264
    3962 
    3963 > volume #6 level 0.000494
    3964 
    3965 > volume #6 level 0.0003399
    3966 
    3967 > close #6
    3968 
    3969 > show #!2 models
    3970 
    3971 > volume subtract #2,1
    3972 
    3973 Opened volume difference as #6, grid size 504,504,504, pixel 1.71, shown at
    3974 step 1, values float32 
    3975 
    3976 > surface dust #6 size 17.1
    3977 
    3978 > ui mousemode right "translate selected models"
    3979 
    3980 > ui mousemode right zoom
    3981 
    3982 > volume #6 level 0.0176
    3983 
    3984 > save "/Users/rosheny/Desktop/Ph_D
    3985 > /PHAGE/fitting&segmentation/BAS18betweenhexamer.cxs"
    3986 
    3987 > open "/Users/rosheny/Desktop/Ph_D
    3988 > /PHAGE/alphafold/GeneID_79676105_protein_putativeminorcapsidprotein_cde7b/GeneID_79676105_protein_putativeminorcapsidprotein_cde7b_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb"
    3989 
    3990 Chain information for
    3991 GeneID_79676105_protein_putativeminorcapsidprotein_cde7b_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    3992 #7 
    3993 --- 
    3994 Chain | Description 
    3995 A | No description available 
    3996  
    3997 
    3998 > select add #7
    3999 
    4000 2875 atoms, 2926 bonds, 367 residues, 1 model selected 
    4001 
    4002 > view sel
    4003 
    4004 > view
    4005 
    4006 > volume #!6 showOutlineBox true
    4007 
    4008 > ui mousemode right clip
    4009 
    4010 > ui mousemode right "translate selected models"
    4011 
    4012 > view matrix models #7,1,0,0,704.43,0,1,0,658.77,0,0,1,299.05
    4013 
    4014 > view matrix models #7,1,0,0,726.04,0,1,0,536.29,0,0,1,290.65
    4015 
    4016 > volume #!6 showOutlineBox false
    4017 
    4018 > ui mousemode right clip
    4019 
    4020 > ui mousemode right "rotate selected models"
    4021 
    4022 > select clear
    4023 
    4024 > ui mousemode right "translate selected models"
    4025 
    4026 > select add #7
    4027 
    4028 2875 atoms, 2926 bonds, 367 residues, 1 model selected 
    4029 
    4030 > ui mousemode right "rotate selected models"
    4031 
    4032 > view matrix models
    4033 > #7,-0.07603,-0.18454,0.97988,723.19,0.18642,0.96277,0.19579,535.13,-0.97952,0.19755,-0.038797,296.82
    4034 
    4035 > ui mousemode right "rotate selected models"
    4036 
    4037 > select clear
    4038 
    4039 > ui mousemode right "translate selected models"
    4040 
    4041 > select add #7
    4042 
    4043 2875 atoms, 2926 bonds, 367 residues, 1 model selected 
    4044 
    4045 > view matrix models
    4046 > #7,-0.07603,-0.18454,0.97988,694.14,0.18642,0.96277,0.19579,554.35,-0.97952,0.19755,-0.038797,334.33
    4047 
    4048 > view matrix models
    4049 > #7,-0.07603,-0.18454,0.97988,701.93,0.18642,0.96277,0.19579,512.03,-0.97952,0.19755,-0.038797,345.7
    4050 
    4051 > ui mousemode right "rotate selected models"
    4052 
    4053 > view matrix models
    4054 > #7,-0.19835,0.29817,0.93367,703.52,0.2499,0.9365,-0.24599,513.66,-0.94774,0.18453,-0.26027,346.52
    4055 
    4056 > ui mousemode right "translate selected models"
    4057 
    4058 > view matrix models
    4059 > #7,-0.19835,0.29817,0.93367,700.52,0.2499,0.9365,-0.24599,516.36,-0.94774,0.18453,-0.26027,347.87
    4060 
    4061 > view matrix models
    4062 > #7,-0.19835,0.29817,0.93367,697.47,0.2499,0.9365,-0.24599,517.34,-0.94774,0.18453,-0.26027,346.86
    4063 
    4064 > ui tool show "Fit in Map"
    4065 
    4066 > fitmap sel inMap #2
    4067 
    4068 Fit molecule
    4069 GeneID_79676105_protein_putativeminorcapsidprotein_cde7b_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    4070 (#7) to map bas18_pp_b2_sh3.mrc (#2) using 2875 atoms 
    4071 average map value = 0.01199, steps = 212 
    4072 shifted from previous position = 14.2 
    4073 rotated from previous position = 27.2 degrees 
    4074 atoms outside contour = 2408, contour level = 0.020062 
    4075  
    4076 Position of
    4077 GeneID_79676105_protein_putativeminorcapsidprotein_cde7b_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    4078 (#7) relative to bas18_pp_b2_sh3.mrc (#2) coordinates: 
    4079 Matrix rotation and translation 
    4080 0.26923518 0.26120387 0.92697625 697.33610396 
    4081 0.22474765 0.91890123 -0.32420522 510.18809133 
    4082 -0.93648327 0.29562318 0.18869558 334.77109525 
    4083 Axis 0.31556621 0.94872202 -0.01856054 
    4084 Axis point 485.57799563 0.00000000 -131.90085605 
    4085 Rotation angle (degrees) 79.13964214 
    4086 Shift along axis 697.86885260 
    4087  
    4088 
    4089 > select clear
    4090 
    4091 > ui mousemode right zoom
    4092 
    4093 > show #!5 models
    4094 
    4095 > hide #!5 models
    4096 
    4097 > show #4 models
    4098 
    4099 > hide #4 models
    4100 
    4101 > close #7
    4102 
    4103 > ui mousemode right "translate selected models"
    4104 
    4105 > open "/Users/rosheny/Desktop/Ph_D
    4106 > /PHAGE/alphafold/GeneID_79676113_protein_hypotheticalprotein_07d98/GeneID_79676113_protein_hypotheticalprotein_07d98_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb"
    4107 
    4108 Chain information for
    4109 GeneID_79676113_protein_hypotheticalprotein_07d98_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4110 #7 
    4111 --- 
    4112 Chain | Description 
    4113 A | No description available 
    4114  
    4115 
    4116 > ui mousemode right zoom
    4117 
    4118 > ui mousemode right clip
    4119 
    4120 > ui mousemode right "translate selected models"
    4121 
    4122 > select add #7
    4123 
    4124 917 atoms, 932 bonds, 119 residues, 1 model selected 
    4125 
    4126 > view matrix models #7,1,0,0,467.18,0,1,0,651.74,0,0,1,755.07
    4127 
    4128 > view matrix models #7,1,0,0,632.69,0,1,0,759.54,0,0,1,303.38
    4129 
    4130 > view matrix models #7,1,0,0,763.71,0,1,0,595.02,0,0,1,293.43
    4131 
    4132 > ui mousemode right zoom
    4133 
    4134 > select clear
    4135 
    4136 > ui mousemode right "translate selected models"
    4137 
    4138 > ui mousemode right zoom
    4139 
    4140 > ui mousemode right "translate selected models"
    4141 
    4142 > ui mousemode right zoom
    4143 
    4144 > ui mousemode right clip
    4145 
    4146 > ui mousemode right "translate selected models"
    4147 
    4148 > select add #7
    4149 
    4150 917 atoms, 932 bonds, 119 residues, 1 model selected 
    4151 
    4152 > view matrix models #7,1,0,0,615.77,0,1,0,545.66,0,0,1,266.24
    4153 
    4154 > select clear
    4155 
    4156 > select add #7
    4157 
    4158 917 atoms, 932 bonds, 119 residues, 1 model selected 
    4159 
    4160 > view matrix models #7,1,0,0,638.94,0,1,0,519.17,0,0,1,232.99
    4161 
    4162 > view matrix models #7,1,0,0,635.32,0,1,0,534.55,0,0,1,231.43
    4163 
    4164 > fitmap sel inMap #6
    4165 
    4166 Fit molecule
    4167 GeneID_79676113_protein_hypotheticalprotein_07d98_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4168 (#7) to map volume difference (#6) using 917 atoms 
    4169 average map value = 0.01251, steps = 124 
    4170 shifted from previous position = 5.3 
    4171 rotated from previous position = 19.8 degrees 
    4172 atoms outside contour = 686, contour level = 0.017597 
    4173  
    4174 Position of
    4175 GeneID_79676113_protein_hypotheticalprotein_07d98_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4176 (#7) relative to volume difference (#6) coordinates: 
    4177 Matrix rotation and translation 
    4178 0.94994646 -0.27323031 0.15148237 634.32794664 
    4179 0.25027700 0.95577490 0.15445312 536.13618015 
    4180 -0.18698433 -0.10880965 0.97631825 236.25179278 
    4181 Axis -0.38903741 0.50017026 0.77361463 
    4182 Axis point -1232.68220827 2838.08187949 0.00000000 
    4183 Rotation angle (degrees) 19.77646920 
    4184 Shift along axis 204.14991541 
    4185  
    4186 
    4187 > select clear
    4188 
    4189 > ui mousemode right zoom
    4190 
    4191 > ui mousemode right "translate selected models"
    4192 
    4193 > ui mousemode right zoom
    4194 
    4195 > ui mousemode right "translate selected models"
    4196 
    4197 > hide #7 models
    4198 
    4199 > close #7
    4200 
    4201 > ui mousemode right zoom
    4202 
    4203 > ui mousemode right "translate selected models"
    4204 
    4205 > ui mousemode right zoom
    4206 
    4207 > ui mousemode right "translate selected models"
    4208 
    4209 > open "/Users/rosheny/Desktop/Ph_D
    4210 > /PHAGE/alphafold/GeneID_79676108_protein_hypotheticalprotein_0f5c7/GeneID_79676108_protein_hypotheticalprotein_0f5c7_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb"
    4211 
    4212 Chain information for
    4213 GeneID_79676108_protein_hypotheticalprotein_0f5c7_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    4214 #7 
    4215 --- 
    4216 Chain | Description 
    4217 A | No description available 
    4218  
    4219 
    4220 > open "/Users/rosheny/Desktop/Ph_D
    4221 > /PHAGE/alphafold/GeneID_79676109_protein_hypotheticalprotein_aaeab/GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb"
    4222 
    4223 Chain information for
    4224 GeneID_79676109_protein_hypotheticalprotein_aaeab_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    4225 #8 
    4226 --- 
    4227 Chain | Description 
    4228 A | No description available 
    4229  
    4230 
    4231 > open "/Users/rosheny/Desktop/Ph_D
    4232 > /PHAGE/alphafold/GeneID_79676111_protein_hypotheticalprotein_57cf4/GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb"
    4233 
    4234 Chain information for
    4235 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4236 #9 
    4237 --- 
    4238 Chain | Description 
    4239 A | No description available 
    4240  
    4241 
    4242 > open "/Users/rosheny/Desktop/Ph_D
    4243 > /PHAGE/alphafold/GeneID_79676112_protein_hypotheticalprotein_97f6b/GeneID_79676112_protein_hypotheticalprotein_97f6b_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb"
    4244 
    4245 Chain information for
    4246 GeneID_79676112_protein_hypotheticalprotein_97f6b_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    4247 #10 
    4248 --- 
    4249 Chain | Description 
    4250 A | No description available 
    4251  
    4252 
    4253 > open "/Users/rosheny/Desktop/Ph_D
    4254 > /PHAGE/alphafold/GeneID_79676113_protein_hypotheticalprotein_07d98/GeneID_79676113_protein_hypotheticalprotein_07d98_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb"
    4255 
    4256 Chain information for
    4257 GeneID_79676113_protein_hypotheticalprotein_07d98_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4258 #11 
    4259 --- 
    4260 Chain | Description 
    4261 A | No description available 
    4262  
    4263 
    4264 > open "/Users/rosheny/Desktop/Ph_D
    4265 > /PHAGE/alphafold/GeneID_79676114_protein_putativetailprotein_16485/GeneID_79676114_protein_putativetailprotein_16485_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb"
    4266 
    4267 Chain information for
    4268 GeneID_79676114_protein_putativetailprotein_16485_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    4269 #12 
    4270 --- 
    4271 Chain | Description 
    4272 A | No description available 
    4273  
    4274 
    4275 > close #12
    4276 
    4277 > ui mousemode right zoom
    4278 
    4279 > ui mousemode right clip
    4280 
    4281 > select add #7
    4282 
    4283 2023 atoms, 2061 bonds, 254 residues, 1 model selected 
    4284 
    4285 > select add #8
    4286 
    4287 3808 atoms, 3866 bonds, 488 residues, 2 models selected 
    4288 
    4289 > select add #9
    4290 
    4291 5075 atoms, 5165 bonds, 654 residues, 3 models selected 
    4292 
    4293 > select add #10
    4294 
    4295 5354 atoms, 5451 bonds, 692 residues, 4 models selected 
    4296 
    4297 > select add #11
    4298 
    4299 6271 atoms, 6383 bonds, 811 residues, 5 models selected 
    4300 
    4301 > ui mousemode right "translate selected models"
    4302 
    4303 > hide #!6 models
    4304 
    4305 > show #!6 models
    4306 
    4307 > view sel
    4308 
    4309 [Repeated 1 time(s)]
    4310 
    4311 > view
    4312 
    4313 > ui mousemode right clip
    4314 
    4315 > select clear
    4316 
    4317 > select add #7
    4318 
    4319 2023 atoms, 2061 bonds, 254 residues, 1 model selected 
    4320 
    4321 > select add #8
    4322 
    4323 3808 atoms, 3866 bonds, 488 residues, 2 models selected 
    4324 
    4325 > select add #9
    4326 
    4327 5075 atoms, 5165 bonds, 654 residues, 3 models selected 
    4328 
    4329 > select add #10
    4330 
    4331 5354 atoms, 5451 bonds, 692 residues, 4 models selected 
    4332 
    4333 > select add #11
    4334 
    4335 6271 atoms, 6383 bonds, 811 residues, 5 models selected 
    4336 
    4337 > ui mousemode right "translate selected models"
    4338 
    4339 > view matrix models
    4340 > #7,1,0,0,558.81,0,1,0,-24.367,0,0,1,147.05,#8,1,0,0,558.81,0,1,0,-24.367,0,0,1,147.05,#9,1,0,0,558.81,0,1,0,-24.367,0,0,1,147.05,#10,1,0,0,558.81,0,1,0,-24.367,0,0,1,147.05,#11,1,0,0,558.81,0,1,0,-24.367,0,0,1,147.05
    4341 
    4342 > view matrix models
    4343 > #7,1,0,0,475.37,0,1,0,565.07,0,0,1,386.31,#8,1,0,0,475.37,0,1,0,565.07,0,0,1,386.31,#9,1,0,0,475.37,0,1,0,565.07,0,0,1,386.31,#10,1,0,0,475.37,0,1,0,565.07,0,0,1,386.31,#11,1,0,0,475.37,0,1,0,565.07,0,0,1,386.31
    4344 
    4345 > view matrix models
    4346 > #7,1,0,0,493.68,0,1,0,559.64,0,0,1,343.59,#8,1,0,0,493.68,0,1,0,559.64,0,0,1,343.59,#9,1,0,0,493.68,0,1,0,559.64,0,0,1,343.59,#10,1,0,0,493.68,0,1,0,559.64,0,0,1,343.59,#11,1,0,0,493.68,0,1,0,559.64,0,0,1,343.59
    4347 
    4348 > select clear
    4349 
    4350 > ui mousemode right clip
    4351 
    4352 > ui mousemode right translate
    4353 
    4354 > ui mousemode right zoom
    4355 
    4356 > ui mousemode right "translate selected models"
    4357 
    4358 > ui mousemode right zoom
    4359 
    4360 > ui mousemode right "translate selected models"
    4361 
    4362 > hide #7 models
    4363 
    4364 > hide #8 models
    4365 
    4366 > hide #9 models
    4367 
    4368 > hide #11 models
    4369 
    4370 > show #11 models
    4371 
    4372 > show #9 models
    4373 
    4374 > show #8 models
    4375 
    4376 > show #7 models
    4377 
    4378 > select add #7
    4379 
    4380 2023 atoms, 2061 bonds, 254 residues, 1 model selected 
    4381 
    4382 > select add #8
    4383 
    4384 3808 atoms, 3866 bonds, 488 residues, 2 models selected 
    4385 
    4386 > select add #9
    4387 
    4388 5075 atoms, 5165 bonds, 654 residues, 3 models selected 
    4389 
    4390 > select add #10
    4391 
    4392 5354 atoms, 5451 bonds, 692 residues, 4 models selected 
    4393 
    4394 > select add #11
    4395 
    4396 6271 atoms, 6383 bonds, 811 residues, 5 models selected 
    4397 
    4398 > view matrix models
    4399 > #7,1,0,0,636.82,0,1,0,499.73,0,0,1,297.13,#8,1,0,0,636.82,0,1,0,499.73,0,0,1,297.13,#9,1,0,0,636.82,0,1,0,499.73,0,0,1,297.13,#10,1,0,0,636.82,0,1,0,499.73,0,0,1,297.13,#11,1,0,0,636.82,0,1,0,499.73,0,0,1,297.13
    4400 
    4401 > view matrix models
    4402 > #7,1,0,0,594.87,0,1,0,509.29,0,0,1,282.29,#8,1,0,0,594.87,0,1,0,509.29,0,0,1,282.29,#9,1,0,0,594.87,0,1,0,509.29,0,0,1,282.29,#10,1,0,0,594.87,0,1,0,509.29,0,0,1,282.29,#11,1,0,0,594.87,0,1,0,509.29,0,0,1,282.29
    4403 
    4404 > view matrix models
    4405 > #7,1,0,0,612.8,0,1,0,545.17,0,0,1,262.76,#8,1,0,0,612.8,0,1,0,545.17,0,0,1,262.76,#9,1,0,0,612.8,0,1,0,545.17,0,0,1,262.76,#10,1,0,0,612.8,0,1,0,545.17,0,0,1,262.76,#11,1,0,0,612.8,0,1,0,545.17,0,0,1,262.76
    4406 
    4407 > view matrix models
    4408 > #7,1,0,0,618.67,0,1,0,523.16,0,0,1,251.29,#8,1,0,0,618.67,0,1,0,523.16,0,0,1,251.29,#9,1,0,0,618.67,0,1,0,523.16,0,0,1,251.29,#10,1,0,0,618.67,0,1,0,523.16,0,0,1,251.29,#11,1,0,0,618.67,0,1,0,523.16,0,0,1,251.29
    4409 
    4410 > select clear
    4411 
    4412 > ui mousemode right zoom
    4413 
    4414 > ui mousemode right "translate selected models"
    4415 
    4416 > hide #!6 models
    4417 
    4418 > hide #7 models
    4419 
    4420 > show #7 models
    4421 
    4422 > hide #7 models
    4423 
    4424 > hide #9 models
    4425 
    4426 > hide #8 models
    4427 
    4428 > hide #10 models
    4429 
    4430 > hide #11 models
    4431 
    4432 > show #10 models
    4433 
    4434 > hide #10 models
    4435 
    4436 > show #9 models
    4437 
    4438 > show #!6 models
    4439 
    4440 > ui mousemode right zoom
    4441 
    4442 > ui mousemode right "translate selected models"
    4443 
    4444 > ui mousemode right "rotate selected models"
    4445 
    4446 > ui mousemode right zoom
    4447 
    4448 > ui mousemode right "translate selected models"
    4449 
    4450 > ui mousemode right "rotate selected models"
    4451 
    4452 > select add #9
    4453 
    4454 1267 atoms, 1299 bonds, 166 residues, 1 model selected 
    4455 
    4456 > fitmap sel inMap #6
    4457 
    4458 Fit molecule
    4459 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4460 (#9) to map volume difference (#6) using 1267 atoms 
    4461 average map value = 0.009577, steps = 144 
    4462 shifted from previous position = 11.4 
    4463 rotated from previous position = 9.23 degrees 
    4464 atoms outside contour = 1116, contour level = 0.017597 
    4465  
    4466 Position of
    4467 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4468 (#9) relative to volume difference (#6) coordinates: 
    4469 Matrix rotation and translation 
    4470 0.99674849 -0.07168782 -0.03678731 624.44546855 
    4471 0.06587884 0.98792828 -0.14020590 524.26641880 
    4472 0.04639428 0.13732651 0.98943873 241.05016253 
    4473 Axis 0.86531366 -0.25935046 0.42891678 
    4474 Axis point 0.00000000 189.16154322 4662.22501946 
    4475 Rotation angle (degrees) 9.22809501 
    4476 Shift along axis 507.76291928 
    4477  
    4478 
    4479 > select clear
    4480 
    4481 > ui mousemode right zoom
    4482 
    4483 > ui mousemode right "translate selected models"
    4484 
    4485 > select add #9
    4486 
    4487 1267 atoms, 1299 bonds, 166 residues, 1 model selected 
    4488 
    4489 > view matrix models
    4490 > #9,0.99675,-0.071688,-0.036787,632.81,0.065879,0.98793,-0.14021,539.16,0.046394,0.13733,0.98944,227.63
    4491 
    4492 > fitmap sel inMap #6
    4493 
    4494 Fit molecule
    4495 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4496 (#9) to map volume difference (#6) using 1267 atoms 
    4497 average map value = 0.01232, steps = 96 
    4498 shifted from previous position = 7.78 
    4499 rotated from previous position = 31.7 degrees 
    4500 atoms outside contour = 956, contour level = 0.017597 
    4501  
    4502 Position of
    4503 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4504 (#9) relative to volume difference (#6) coordinates: 
    4505 Matrix rotation and translation 
    4506 0.96190067 0.00476756 0.27335758 637.73213388 
    4507 0.15072653 0.82492895 -0.54476943 535.39631264 
    4508 -0.22809780 0.56521632 0.79278112 230.05957944 
    4509 Axis 0.90484398 0.40877901 0.11898359 
    4510 Axis point 0.00000000 -89.36526445 393.74809350 
    4511 Rotation angle (degrees) 37.83267320 
    4512 Shift along axis 823.28017228 
    4513  
    4514 
    4515 > select clear
    4516 
    4517 > hide #!6 models
    4518 
    4519 > show #!6 models
    4520 
    4521 > ui mousemode right zoom
    4522 
    4523 > transparency #6.1 50
    4524 
    4525 > lighting full
    4526 
    4527 > lighting soft
    4528 
    4529 > lighting simple
    4530 
    4531 > select add #9
    4532 
    4533 1267 atoms, 1299 bonds, 166 residues, 1 model selected 
    4534 
    4535 > ui mousemode right "translate selected models"
    4536 
    4537 > view matrix models
    4538 > #9,0.9619,0.0047676,0.27336,642.46,0.15073,0.82493,-0.54477,535.86,-0.2281,0.56522,0.79278,238.38
    4539 
    4540 > fitmap sel inMap #6
    4541 
    4542 Fit molecule
    4543 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4544 (#9) to map volume difference (#6) using 1267 atoms 
    4545 average map value = 0.01232, steps = 92 
    4546 shifted from previous position = 9.58 
    4547 rotated from previous position = 0.014 degrees 
    4548 atoms outside contour = 956, contour level = 0.017597 
    4549  
    4550 Position of
    4551 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4552 (#9) relative to volume difference (#6) coordinates: 
    4553 Matrix rotation and translation 
    4554 0.96188456 0.00455077 0.27341797 637.73277468 
    4555 0.15095344 0.82487814 -0.54478355 535.39973142 
    4556 -0.22801569 0.56529226 0.79275059 230.06063278 
    4557 Axis 0.90482483 0.40871950 0.11933309 
    4558 Axis point 0.00000000 -88.85309671 393.64895921 
    4559 Rotation angle (degrees) 37.83722464 
    4560 Shift along axis 823.31861063 
    4561  
    4562 
    4563 > select clear
    4564 
    4565 > ui mousemode right "rotate selected models"
    4566 
    4567 > select add #9
    4568 
    4569 1267 atoms, 1299 bonds, 166 residues, 1 model selected 
    4570 
    4571 > view matrix models
    4572 > #9,0.95066,0.039124,0.30775,637.51,0.15947,0.78928,-0.59296,535.64,-0.2661,0.61278,0.7441,229.84
    4573 
    4574 > view matrix models
    4575 > #9,0.94076,0.092562,0.32619,637.18,0.13855,0.77311,-0.61896,535.78,-0.30947,0.62748,0.71449,229.82
    4576 
    4577 > view matrix models
    4578 > #9,0.93833,0.11476,0.32614,637.05,0.12243,0.77191,-0.62383,535.8,-0.32334,0.62529,0.71026,229.85
    4579 
    4580 > view matrix models
    4581 > #9,0.98281,0.13008,0.13099,637.05,0.0057117,0.68782,-0.72586,536.5,-0.18451,0.71414,0.67525,229.19
    4582 
    4583 > view matrix models
    4584 > #9,0.85365,-0.001513,-0.52085,638.42,-0.48557,0.35947,-0.79687,539.02,0.18844,0.93315,0.30613,227.75
    4585 
    4586 > fitmap sel inMap #6
    4587 
    4588 Fit molecule
    4589 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4590 (#9) to map volume difference (#6) using 1267 atoms 
    4591 average map value = 0.01224, steps = 132 
    4592 shifted from previous position = 6.15 
    4593 rotated from previous position = 20.7 degrees 
    4594 atoms outside contour = 940, contour level = 0.017597 
    4595  
    4596 Position of
    4597 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4598 (#9) relative to volume difference (#6) coordinates: 
    4599 Matrix rotation and translation 
    4600 0.81999210 -0.31156746 -0.48014444 634.66487363 
    4601 -0.29409822 0.49031193 -0.82042699 534.28961212 
    4602 0.49103890 0.81395327 0.31042047 227.18573383 
    4603 Axis 0.85964059 -0.51081663 0.00918836 
    4604 Axis point 0.00000000 275.58858234 651.08877222 
    4605 Rotation angle (degrees) 71.91893733 
    4606 Shift along axis 274.74713266 
    4607  
    4608 
    4609 > select clear
    4610 
    4611 > ui mousemode right zoom
    4612 
    4613 > ui mousemode right "translate selected models"
    4614 
    4615 > ui mousemode right zoom
    4616 
    4617 > select add #9
    4618 
    4619 1267 atoms, 1299 bonds, 166 residues, 1 model selected 
    4620 
    4621 > ui mousemode right "rotate selected models"
    4622 
    4623 > view matrix models
    4624 > #9,-0.36336,-0.93113,-0.031268,639.28,-0.15244,0.092531,-0.98397,536.68,0.91909,-0.35276,-0.17556,234.19
    4625 
    4626 > fitmap sel inMap #6
    4627 
    4628 Fit molecule
    4629 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4630 (#9) to map volume difference (#6) using 1267 atoms 
    4631 average map value = 0.01227, steps = 148 
    4632 shifted from previous position = 4.02 
    4633 rotated from previous position = 40.8 degrees 
    4634 atoms outside contour = 938, contour level = 0.017597 
    4635  
    4636 Position of
    4637 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4638 (#9) relative to volume difference (#6) coordinates: 
    4639 Matrix rotation and translation 
    4640 -0.23754122 -0.97080991 -0.03320077 636.03923522 
    4641 -0.73844842 0.20268057 -0.64312869 536.14427656 
    4642 0.63108486 -0.12825252 -0.76503803 232.61382243 
    4643 Axis 0.59046181 -0.76180510 0.26647297 
    4644 Axis point 491.93087169 0.00000000 303.28429933 
    4645 Rotation angle (degrees) 154.15140923 
    4646 Shift along axis 29.10473318 
    4647  
    4648 
    4649 > select clear
    4650 
    4651 > ui mousemode right "translate selected models"
    4652 
    4653 > select add #9
    4654 
    4655 1267 atoms, 1299 bonds, 166 residues, 1 model selected 
    4656 
    4657 > view matrix models
    4658 > #9,-0.23754,-0.97081,-0.033201,642.71,-0.73845,0.20268,-0.64313,524.33,0.63108,-0.12825,-0.76504,226.37
    4659 
    4660 > ui mousemode right "rotate selected models"
    4661 
    4662 > view matrix models
    4663 > #9,0.53492,-0.078876,0.84121,635.94,-0.25998,-0.96269,0.075051,530.45,0.80391,-0.25884,-0.53547,226.84
    4664 
    4665 > fitmap sel inMap #6
    4666 
    4667 Fit molecule
    4668 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4669 (#9) to map volume difference (#6) using 1267 atoms 
    4670 average map value = 0.01136, steps = 96 
    4671 shifted from previous position = 4.17 
    4672 rotated from previous position = 16.5 degrees 
    4673 atoms outside contour = 983, contour level = 0.017597 
    4674  
    4675 Position of
    4676 GeneID_79676111_protein_hypotheticalprotein_57cf4_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4677 (#9) relative to volume difference (#6) coordinates: 
    4678 Matrix rotation and translation 
    4679 0.59375367 -0.24878731 0.76521987 638.06020796 
    4680 -0.18112240 -0.96791846 -0.17415091 532.40595032 
    4681 0.78399698 -0.03519572 -0.61976609 230.01851871 
    4682 Axis 0.89250668 -0.12060498 0.43461048 
    4683 Axis point 0.00000000 310.03483963 -27.12302650 
    4684 Rotation angle (degrees) 175.53526630 
    4685 Shift along axis 605.23064451 
    4686  
    4687 
    4688 > select clear
    4689 
    4690 > ui mousemode right zoom
    4691 
    4692 > show #8 models
    4693 
    4694 > close #8
    4695 
    4696 > show #7 models
    4697 
    4698 > close #7
    4699 
    4700 > show #10 models
    4701 
    4702 > select add #10
    4703 
    4704 279 atoms, 286 bonds, 38 residues, 1 model selected 
    4705 
    4706 > show #11 models
    4707 
    4708 > close #10
    4709 
    4710 > select add #11
    4711 
    4712 917 atoms, 932 bonds, 119 residues, 1 model selected 
    4713 
    4714 > ui mousemode right "translate selected models"
    4715 
    4716 > view matrix models #11,1,0,0,614.68,0,1,0,531.47,0,0,1,251.57
    4717 
    4718 > view matrix models #11,1,0,0,618.52,0,1,0,501.55,0,0,1,280.35
    4719 
    4720 > fitmap sel inMap #6
    4721 
    4722 Fit molecule
    4723 GeneID_79676113_protein_hypotheticalprotein_07d98_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4724 (#11) to map volume difference (#6) using 917 atoms 
    4725 average map value = 0.008023, steps = 176 
    4726 shifted from previous position = 20.9 
    4727 rotated from previous position = 19.9 degrees 
    4728 atoms outside contour = 912, contour level = 0.017597 
    4729  
    4730 Position of
    4731 GeneID_79676113_protein_hypotheticalprotein_07d98_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4732 (#11) relative to volume difference (#6) coordinates: 
    4733 Matrix rotation and translation 
    4734 0.94042542 -0.25815890 0.22125553 638.30206975 
    4735 0.25667067 0.96582947 0.03596678 496.19428477 
    4736 -0.22298026 0.02296573 0.97455240 277.90541755 
    4737 Axis -0.01911580 0.65317215 0.75696812 
    4738 Axis point -261.78656655 2571.59987031 0.00000000 
    4739 Rotation angle (degrees) 19.88054615 
    4740 Shift along axis 522.26417491 
    4741  
    4742 
    4743 > ui mousemode right "rotate selected models"
    4744 
    4745 > view matrix models
    4746 > #11,0.48238,-0.87371,0.06273,636,0.76191,0.45383,0.46209,486.94,-0.4322,-0.17511,0.88461,277.68
    4747 
    4748 > ui mousemode right "translate selected models"
    4749 
    4750 > view matrix models
    4751 > #11,0.48238,-0.87371,0.06273,624.79,0.76191,0.45383,0.46209,511.89,-0.4322,-0.17511,0.88461,276.34
    4752 
    4753 > fitmap sel inMap #6
    4754 
    4755 Fit molecule
    4756 GeneID_79676113_protein_hypotheticalprotein_07d98_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4757 (#11) to map volume difference (#6) using 917 atoms 
    4758 average map value = 0.01029, steps = 268 
    4759 shifted from previous position = 17.2 
    4760 rotated from previous position = 44.8 degrees 
    4761 atoms outside contour = 874, contour level = 0.017597 
    4762  
    4763 Position of
    4764 GeneID_79676113_protein_hypotheticalprotein_07d98_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    4765 (#11) relative to volume difference (#6) coordinates: 
    4766 Matrix rotation and translation 
    4767 0.30435800 -0.69662132 -0.64968066 627.46134848 
    4768 0.91422865 0.02209933 0.40459561 521.24325154 
    4769 -0.26749241 -0.71709858 0.64359727 261.52617411 
    4770 Axis -0.56090997 -0.19111554 0.80551527 
    4771 Axis point 114.20150674 592.70754341 0.00000000 
    4772 Rotation angle (degrees) 90.85790443 
    4773 Shift along axis -240.90368428 
    4774  
    4775 
    4776 > close #11
    4777 
    4778 > open "/Users/rosheny/Desktop/Ph_D
    4779 > /PHAGE/alphafold/GeneID_79676114_protein_putativetailprotein_16485/GeneID_79676114_protein_putativetailprotein_16485_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb"
    4780 
    4781 Chain information for
    4782 GeneID_79676114_protein_putativetailprotein_16485_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    4783 #7 
    4784 --- 
    4785 Chain | Description 
    4786 A | No description available 
    4787  
    4788 
    4789 > open "/Users/rosheny/Desktop/Ph_D
    4790 > /PHAGE/alphafold/GeneID_79676115_protein_putativetailprotein_7918e/GeneID_79676115_protein_putativetailprotein_7918e_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb"
    4791 
    4792 Chain information for
    4793 GeneID_79676115_protein_putativetailprotein_7918e_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    4794 #8 
    4795 --- 
    4796 Chain | Description 
    4797 A | No description available 
    4798  
    4799 
    4800 > open "/Users/rosheny/Desktop/Ph_D
    4801 > /PHAGE/alphafold/GeneID_79676116_protein_majortailprotein_80e33/GeneID_79676116_protein_majortailprotein_80e33_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb"
    4802 
    4803 Chain information for
    4804 GeneID_79676116_protein_majortailprotein_80e33_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    4805 #10 
    4806 --- 
    4807 Chain | Description 
    4808 A | No description available 
    4809  
    4810 
    4811 > open "/Users/rosheny/Desktop/Ph_D
    4812 > /PHAGE/alphafold/GeneID_79676117_protein_hypotheticalprotein_67b12/GeneID_79676117_protein_hypotheticalprotein_67b12_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb"
    4813 
    4814 Chain information for
    4815 GeneID_79676117_protein_hypotheticalprotein_67b12_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    4816 #11 
    4817 --- 
    4818 Chain | Description 
    4819 A | No description available 
    4820  
    4821 
    4822 > open "/Users/rosheny/Desktop/Ph_D
    4823 > /PHAGE/alphafold/GeneID_79676118_protein_hypotheticalprotein_8bf64/GeneID_79676118_protein_hypotheticalprotein_8bf64_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb"
    4824 
    4825 Chain information for
    4826 GeneID_79676118_protein_hypotheticalprotein_8bf64_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    4827 #12 
    4828 --- 
    4829 Chain | Description 
    4830 A | No description available 
    4831  
    4832 
    4833 > open "/Users/rosheny/Desktop/Ph_D
    4834 > /PHAGE/alphafold/GeneID_79676119_protein_hypotheticalprotein_7be82/GeneID_79676119_protein_hypotheticalprotein_7be82_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb"
    4835 
    4836 Chain information for
    4837 GeneID_79676119_protein_hypotheticalprotein_7be82_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    4838 #13 
    4839 --- 
    4840 Chain | Description 
    4841 A | No description available 
    4842  
    4843 
    4844 > ui mousemode right zoom
    4845 
    4846 > select add #7
    4847 
    4848 1320 atoms, 1348 bonds, 167 residues, 1 model selected 
    4849 
    4850 > select add #8
    4851 
    4852 2391 atoms, 2441 bonds, 307 residues, 2 models selected 
    4853 
    4854 > select add #10
    4855 
    4856 4197 atoms, 4278 bonds, 548 residues, 3 models selected 
    4857 
    4858 > select add #11
    4859 
    4860 5179 atoms, 5287 bonds, 668 residues, 4 models selected 
    4861 
    4862 > select add #12
    4863 
    4864 5407 atoms, 5518 bonds, 699 residues, 5 models selected 
    4865 
    4866 > select add #13
    4867 
    4868 5809 atoms, 5927 bonds, 753 residues, 6 models selected 
    4869 
    4870 > ui mousemode right clip
    4871 
    4872 > ui mousemode right zoom
    4873 
    4874 > ui mousemode right clip
    4875 
    4876 > ui mousemode right zoom
    4877 
    4878 > ui mousemode right "translate selected models"
    4879 
    4880 > view matrix models
    4881 > #7,1,0,0,586.06,0,1,0,695.73,0,0,1,391.68,#8,1,0,0,586.06,0,1,0,695.73,0,0,1,391.68,#10,1,0,0,586.06,0,1,0,695.73,0,0,1,391.68,#11,1,0,0,586.06,0,1,0,695.73,0,0,1,391.68,#12,1,0,0,586.06,0,1,0,695.73,0,0,1,391.68,#13,1,0,0,586.06,0,1,0,695.73,0,0,1,391.68
    4882 
    4883 > view matrix models
    4884 > #7,1,0,0,688.83,0,1,0,480.8,0,0,1,285.15,#8,1,0,0,688.83,0,1,0,480.8,0,0,1,285.15,#10,1,0,0,688.83,0,1,0,480.8,0,0,1,285.15,#11,1,0,0,688.83,0,1,0,480.8,0,0,1,285.15,#12,1,0,0,688.83,0,1,0,480.8,0,0,1,285.15,#13,1,0,0,688.83,0,1,0,480.8,0,0,1,285.15
    4885 
    4886 > ui mousemode right zoom
    4887 
    4888 > select clear
    4889 
    4890 > ui mousemode right clip
    4891 
    4892 > ui mousemode right zoom
    4893 
    4894 > ui mousemode right "translate selected models"
    4895 
    4896 > ui mousemode right zoom
    4897 
    4898 > hide #13 models
    4899 
    4900 > hide #12 models
    4901 
    4902 > hide #11 models
    4903 
    4904 > hide #10 models
    4905 
    4906 > hide #9 models
    4907 
    4908 > hide #8 models
    4909 
    4910 > hide #7 models
    4911 
    4912 > show #7 models
    4913 
    4914 > close #7
    4915 
    4916 > show #8 models
    4917 
    4918 > select add #8
    4919 
    4920 1071 atoms, 1093 bonds, 140 residues, 1 model selected 
    4921 
    4922 > ui mousemode right "translate selected models"
    4923 
    4924 > view matrix models #8,1,0,0,644.03,0,1,0,513.7,0,0,1,292.83
    4925 
    4926 > ui mousemode right "rotate selected models"
    4927 
    4928 > view matrix models
    4929 > #8,0.99981,-0.018675,0.0051593,644.04,0.018731,0.99976,-0.01113,513.76,-0.0049502,0.011225,0.99992,292.8
    4930 
    4931 > view matrix models
    4932 > #8,-0.63474,0.15162,-0.7577,640.17,-0.7688,-0.025181,0.63899,511.81,0.077804,0.98812,0.13255,293.08
    4933 
    4934 > ui mousemode right "translate selected models"
    4935 
    4936 > view matrix models
    4937 > #8,-0.63474,0.15162,-0.7577,660.88,-0.7688,-0.025181,0.63899,507.53,0.077804,0.98812,0.13255,306.55
    4938 
    4939 > fitmap sel inMap #6
    4940 
    4941 Fit molecule
    4942 GeneID_79676115_protein_putativetailprotein_7918e_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    4943 (#8) to map volume difference (#6) using 1071 atoms 
    4944 average map value = 0.009735, steps = 156 
    4945 shifted from previous position = 3.17 
    4946 rotated from previous position = 33.9 degrees 
    4947 atoms outside contour = 1062, contour level = 0.017597 
    4948  
    4949 Position of
    4950 GeneID_79676115_protein_putativetailprotein_7918e_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    4951 (#8) relative to volume difference (#6) coordinates: 
    4952 Matrix rotation and translation 
    4953 -0.70374734 -0.14929571 -0.69458656 659.29570951 
    4954 -0.55338528 -0.49792542 0.66770878 509.69575381 
    4955 -0.44553836 0.85427225 0.26779564 305.19901657 
    4956 Axis 0.36579714 -0.48831167 -0.79230307 
    4957 Axis point 431.83374733 99.38807112 0.00000000 
    4958 Rotation angle (degrees) 165.22585419 
    4959 Shift along axis -249.53202267 
    4960  
    4961 
    4962 > select clear
    4963 
    4964 > ui mousemode right zoom
    4965 
    4966 > close #8
    4967 
    4968 > show #9 models
    4969 
    4970 > show #10 models
    4971 
    4972 > close #10
    4973 
    4974 > show #11 models
    4975 
    4976 > close #11
    4977 
    4978 > show #12 models
    4979 
    4980 > show #13 models
    4981 
    4982 > hide #12 models
    4983 
    4984 > close #12-13
    4985 
    4986 > ui mousemode right clip
    4987 
    4988 > select clear
    4989 
    4990 > ui mousemode right "translate selected models"
    4991 
    4992 > open "/Users/rosheny/Desktop/Ph_D
    4993 > /PHAGE/alphafold/GeneID_79676120_protein_tailtapemeasureprotein_7487b/GeneID_79676120_protein_tailtapemeasureprotein_7487b_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb"
    4994 
    4995 Chain information for
    4996 GeneID_79676120_protein_tailtapemeasureprotein_7487b_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    4997 #7 
    4998 --- 
    4999 Chain | Description 
    5000 A | No description available 
    5001  
    5002 
    5003 > close #7
    5004 
    5005 > open "/Users/rosheny/Desktop/Ph_D
    5006 > /PHAGE/alphafold/GeneID_79676126_protein_hypotheticalprotein_e23ff/GeneID_79676126_protein_hypotheticalprotein_e23ff_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb"
    5007 
    5008 Chain information for
    5009 GeneID_79676126_protein_hypotheticalprotein_e23ff_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    5010 #7 
    5011 --- 
    5012 Chain | Description 
    5013 A | No description available 
    5014  
    5015 
    5016 > open "/Users/rosheny/Desktop/Ph_D
    5017 > /PHAGE/alphafold/GeneID_79676127_protein_hypotheticalprotein_ebb57/GeneID_79676127_protein_hypotheticalprotein_ebb57_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb"
    5018 
    5019 Chain information for
    5020 GeneID_79676127_protein_hypotheticalprotein_ebb57_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5021 #8 
    5022 --- 
    5023 Chain | Description 
    5024 A | No description available 
    5025  
    5026 
    5027 > open "/Users/rosheny/Desktop/Ph_D
    5028 > /PHAGE/alphafold/GeneID_79676129_protein_hypotheticalprotein_0b491/GeneID_79676129_protein_hypotheticalprotein_0b491_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb"
    5029 
    5030 Chain information for
    5031 GeneID_79676129_protein_hypotheticalprotein_0b491_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    5032 #10 
    5033 --- 
    5034 Chain | Description 
    5035 A | No description available 
    5036  
    5037 
    5038 > open "/Users/rosheny/Desktop/Ph_D
    5039 > /PHAGE/alphafold/GeneID_79676130_protein_hypotheticalprotein_bc422/GeneID_79676130_protein_hypotheticalprotein_bc422_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb"
    5040 
    5041 Chain information for
    5042 GeneID_79676130_protein_hypotheticalprotein_bc422_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    5043 #11 
    5044 --- 
    5045 Chain | Description 
    5046 A | No description available 
    5047  
    5048 
    5049 > open "/Users/rosheny/Desktop/Ph_D
    5050 > /PHAGE/alphafold/GeneID_79676132_protein_hypotheticalprotein_2f54a/GeneID_79676132_protein_hypotheticalprotein_2f54a_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb"
    5051 
    5052 Chain information for
    5053 GeneID_79676132_protein_hypotheticalprotein_2f54a_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    5054 #12 
    5055 --- 
    5056 Chain | Description 
    5057 A | No description available 
    5058  
    5059 
    5060 > open "/Users/rosheny/Desktop/Ph_D
    5061 > /PHAGE/alphafold/GeneID_79676134_protein_hypotheticalprotein_1f7fd/GeneID_79676134_protein_hypotheticalprotein_1f7fd_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb"
    5062 
    5063 Chain information for
    5064 GeneID_79676134_protein_hypotheticalprotein_1f7fd_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    5065 #13 
    5066 --- 
    5067 Chain | Description 
    5068 A | No description available 
    5069  
    5070 
    5071 > open "/Users/rosheny/Desktop/Ph_D
    5072 > /PHAGE/alphafold/GeneID_79676135_protein_hypotheticalprotein_eea42/GeneID_79676135_protein_hypotheticalprotein_eea42_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb"
    5073 
    5074 Chain information for
    5075 GeneID_79676135_protein_hypotheticalprotein_eea42_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    5076 #14 
    5077 --- 
    5078 Chain | Description 
    5079 A | No description available 
    5080  
    5081 
    5082 > open "/Users/rosheny/Desktop/Ph_D
    5083 > /PHAGE/alphafold/GeneID_79676139_protein_hypotheticalprotein_a7d56/GeneID_79676139_protein_hypotheticalprotein_a7d56_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb"
    5084 
    5085 Chain information for
    5086 GeneID_79676139_protein_hypotheticalprotein_a7d56_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5087 #15 
    5088 --- 
    5089 Chain | Description 
    5090 A | No description available 
    5091  
    5092 
    5093 > select add #7
    5094 
    5095 2421 atoms, 2465 bonds, 321 residues, 1 model selected 
    5096 
    5097 > select add #8
    5098 
    5099 2962 atoms, 3012 bonds, 394 residues, 2 models selected 
    5100 
    5101 > select add #9
    5102 
    5103 4229 atoms, 4311 bonds, 560 residues, 3 models selected 
    5104 
    5105 > select add #10
    5106 
    5107 5733 atoms, 5845 bonds, 751 residues, 4 models selected 
    5108 
    5109 > select add #11
    5110 
    5111 7075 atoms, 7208 bonds, 924 residues, 5 models selected 
    5112 
    5113 > select add #12
    5114 
    5115 7666 atoms, 7809 bonds, 998 residues, 6 models selected 
    5116 
    5117 > select add #13
    5118 
    5119 8901 atoms, 9062 bonds, 1150 residues, 7 models selected 
    5120 
    5121 > select subtract #9
    5122 
    5123 7634 atoms, 7763 bonds, 984 residues, 6 models selected 
    5124 
    5125 > select add #14
    5126 
    5127 8311 atoms, 8459 bonds, 1064 residues, 7 models selected 
    5128 
    5129 > select add #15
    5130 
    5131 8919 atoms, 9085 bonds, 1138 residues, 8 models selected 
    5132 
    5133 > view matrix models
    5134 > #7,1,0,0,215.24,0,1,0,126.7,0,0,1,165.06,#8,1,0,0,215.24,0,1,0,126.7,0,0,1,165.06,#10,1,0,0,215.24,0,1,0,126.7,0,0,1,165.06,#11,1,0,0,215.24,0,1,0,126.7,0,0,1,165.06,#12,1,0,0,215.24,0,1,0,126.7,0,0,1,165.06,#13,1,0,0,215.24,0,1,0,126.7,0,0,1,165.06,#14,1,0,0,215.24,0,1,0,126.7,0,0,1,165.06,#15,1,0,0,215.24,0,1,0,126.7,0,0,1,165.06
    5135 
    5136 > ui mousemode right zoom
    5137 
    5138 [Repeated 1 time(s)]
    5139 
    5140 > ui mousemode right "translate selected models"
    5141 
    5142 > view matrix models
    5143 > #7,1,0,0,591.97,0,1,0,434.26,0,0,1,457.03,#8,1,0,0,591.97,0,1,0,434.26,0,0,1,457.03,#10,1,0,0,591.97,0,1,0,434.26,0,0,1,457.03,#11,1,0,0,591.97,0,1,0,434.26,0,0,1,457.03,#12,1,0,0,591.97,0,1,0,434.26,0,0,1,457.03,#13,1,0,0,591.97,0,1,0,434.26,0,0,1,457.03,#14,1,0,0,591.97,0,1,0,434.26,0,0,1,457.03,#15,1,0,0,591.97,0,1,0,434.26,0,0,1,457.03
    5144 
    5145 > view matrix models
    5146 > #7,1,0,0,664.31,0,1,0,484.83,0,0,1,472.48,#8,1,0,0,664.31,0,1,0,484.83,0,0,1,472.48,#10,1,0,0,664.31,0,1,0,484.83,0,0,1,472.48,#11,1,0,0,664.31,0,1,0,484.83,0,0,1,472.48,#12,1,0,0,664.31,0,1,0,484.83,0,0,1,472.48,#13,1,0,0,664.31,0,1,0,484.83,0,0,1,472.48,#14,1,0,0,664.31,0,1,0,484.83,0,0,1,472.48,#15,1,0,0,664.31,0,1,0,484.83,0,0,1,472.48
    5147 
    5148 > ui mousemode right zoom
    5149 
    5150 > ui mousemode right "translate selected models"
    5151 
    5152 > view matrix models
    5153 > #7,1,0,0,642.9,0,1,0,511.2,0,0,1,440.67,#8,1,0,0,642.9,0,1,0,511.2,0,0,1,440.67,#10,1,0,0,642.9,0,1,0,511.2,0,0,1,440.67,#11,1,0,0,642.9,0,1,0,511.2,0,0,1,440.67,#12,1,0,0,642.9,0,1,0,511.2,0,0,1,440.67,#13,1,0,0,642.9,0,1,0,511.2,0,0,1,440.67,#14,1,0,0,642.9,0,1,0,511.2,0,0,1,440.67,#15,1,0,0,642.9,0,1,0,511.2,0,0,1,440.67
    5154 
    5155 > ui mousemode right zoom
    5156 
    5157 > ui mousemode right "translate selected models"
    5158 
    5159 > view matrix models
    5160 > #7,1,0,0,632.41,0,1,0,629.86,0,0,1,397.78,#8,1,0,0,632.41,0,1,0,629.86,0,0,1,397.78,#10,1,0,0,632.41,0,1,0,629.86,0,0,1,397.78,#11,1,0,0,632.41,0,1,0,629.86,0,0,1,397.78,#12,1,0,0,632.41,0,1,0,629.86,0,0,1,397.78,#13,1,0,0,632.41,0,1,0,629.86,0,0,1,397.78,#14,1,0,0,632.41,0,1,0,629.86,0,0,1,397.78,#15,1,0,0,632.41,0,1,0,629.86,0,0,1,397.78
    5161 
    5162 > ui mousemode right zoom
    5163 
    5164 > ui mousemode right "translate selected models"
    5165 
    5166 > view matrix models
    5167 > #7,1,0,0,626.79,0,1,0,577.05,0,0,1,377.39,#8,1,0,0,626.79,0,1,0,577.05,0,0,1,377.39,#10,1,0,0,626.79,0,1,0,577.05,0,0,1,377.39,#11,1,0,0,626.79,0,1,0,577.05,0,0,1,377.39,#12,1,0,0,626.79,0,1,0,577.05,0,0,1,377.39,#13,1,0,0,626.79,0,1,0,577.05,0,0,1,377.39,#14,1,0,0,626.79,0,1,0,577.05,0,0,1,377.39,#15,1,0,0,626.79,0,1,0,577.05,0,0,1,377.39
    5168 
    5169 > view matrix models
    5170 > #7,1,0,0,658.9,0,1,0,578,0,0,1,387.19,#8,1,0,0,658.9,0,1,0,578,0,0,1,387.19,#10,1,0,0,658.9,0,1,0,578,0,0,1,387.19,#11,1,0,0,658.9,0,1,0,578,0,0,1,387.19,#12,1,0,0,658.9,0,1,0,578,0,0,1,387.19,#13,1,0,0,658.9,0,1,0,578,0,0,1,387.19,#14,1,0,0,658.9,0,1,0,578,0,0,1,387.19,#15,1,0,0,658.9,0,1,0,578,0,0,1,387.19
    5171 
    5172 > view matrix models
    5173 > #7,1,0,0,671.9,0,1,0,612.14,0,0,1,359.27,#8,1,0,0,671.9,0,1,0,612.14,0,0,1,359.27,#10,1,0,0,671.9,0,1,0,612.14,0,0,1,359.27,#11,1,0,0,671.9,0,1,0,612.14,0,0,1,359.27,#12,1,0,0,671.9,0,1,0,612.14,0,0,1,359.27,#13,1,0,0,671.9,0,1,0,612.14,0,0,1,359.27,#14,1,0,0,671.9,0,1,0,612.14,0,0,1,359.27,#15,1,0,0,671.9,0,1,0,612.14,0,0,1,359.27
    5174 
    5175 > select clear
    5176 
    5177 > ui mousemode right clip
    5178 
    5179 > ui mousemode right zoom
    5180 
    5181 > ui mousemode right clip
    5182 
    5183 > ui mousemode right zoom
    5184 
    5185 > ui mousemode right clip
    5186 
    5187 > ui mousemode right "clip rotate"
    5188 
    5189 > ui mousemode right "translate selected models"
    5190 
    5191 > ui mousemode right zoom
    5192 
    5193 > select add #7
    5194 
    5195 2421 atoms, 2465 bonds, 321 residues, 1 model selected 
    5196 
    5197 > select add #8
    5198 
    5199 2962 atoms, 3012 bonds, 394 residues, 2 models selected 
    5200 
    5201 > select add #10
    5202 
    5203 4466 atoms, 4546 bonds, 585 residues, 3 models selected 
    5204 
    5205 > select add #11
    5206 
    5207 5808 atoms, 5909 bonds, 758 residues, 4 models selected 
    5208 
    5209 > select add #12
    5210 
    5211 6399 atoms, 6510 bonds, 832 residues, 5 models selected 
    5212 
    5213 > select add #13
    5214 
    5215 7634 atoms, 7763 bonds, 984 residues, 6 models selected 
    5216 
    5217 > select add #14
    5218 
    5219 8311 atoms, 8459 bonds, 1064 residues, 7 models selected 
    5220 
    5221 > select add #15
    5222 
    5223 8919 atoms, 9085 bonds, 1138 residues, 8 models selected 
    5224 
    5225 > ui mousemode right "translate selected models"
    5226 
    5227 > view matrix models
    5228 > #7,1,0,0,688.34,0,1,0,549.6,0,0,1,360.37,#8,1,0,0,688.34,0,1,0,549.6,0,0,1,360.37,#10,1,0,0,688.34,0,1,0,549.6,0,0,1,360.37,#11,1,0,0,688.34,0,1,0,549.6,0,0,1,360.37,#12,1,0,0,688.34,0,1,0,549.6,0,0,1,360.37,#13,1,0,0,688.34,0,1,0,549.6,0,0,1,360.37,#14,1,0,0,688.34,0,1,0,549.6,0,0,1,360.37,#15,1,0,0,688.34,0,1,0,549.6,0,0,1,360.37
    5229 
    5230 > select clear
    5231 
    5232 > ui mousemode right zoom
    5233 
    5234 > hide #14 models
    5235 
    5236 > hide #13 models
    5237 
    5238 > hide #12 models
    5239 
    5240 > hide #11 models
    5241 
    5242 > hide #10 models
    5243 
    5244 > hide #9 models
    5245 
    5246 > hide #8 models
    5247 
    5248 > hide #15 models
    5249 
    5250 > select add #7
    5251 
    5252 2421 atoms, 2465 bonds, 321 residues, 1 model selected 
    5253 
    5254 > ui mousemode right "translate selected models"
    5255 
    5256 > view matrix models #7,1,0,0,705.62,0,1,0,526.9,0,0,1,358.62
    5257 
    5258 > fitmap sel inMap #6
    5259 
    5260 Fit molecule
    5261 GeneID_79676126_protein_hypotheticalprotein_e23ff_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    5262 (#7) to map volume difference (#6) using 2421 atoms 
    5263 average map value = 0.01044, steps = 132 
    5264 shifted from previous position = 8.28 
    5265 rotated from previous position = 29.5 degrees 
    5266 atoms outside contour = 2046, contour level = 0.017597 
    5267  
    5268 Position of
    5269 GeneID_79676126_protein_hypotheticalprotein_e23ff_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    5270 (#7) relative to volume difference (#6) coordinates: 
    5271 Matrix rotation and translation 
    5272 0.87148309 -0.24597786 -0.42427834 702.54283380 
    5273 0.22564148 0.96922440 -0.09843775 519.47917804 
    5274 0.43543442 -0.00994796 0.90016548 358.36279874 
    5275 Axis 0.08987737 -0.87319359 0.47901463 
    5276 Axis point -629.69569458 0.00000000 1892.94306601 
    5277 Rotation angle (degrees) 29.49059818 
    5278 Shift along axis -218.80216305 
    5279  
    5280 
    5281 > select clear
    5282 
    5283 > ui mousemode right zoom
    5284 
    5285 > close #7
    5286 
    5287 > show #8 models
    5288 
    5289 > close #8
    5290 
    5291 > show #9 models
    5292 
    5293 > hide #9 models
    5294 
    5295 > show #10 models
    5296 
    5297 > select add #10
    5298 
    5299 1504 atoms, 1534 bonds, 191 residues, 1 model selected 
    5300 
    5301 > ui mousemode right "translate selected models"
    5302 
    5303 > view matrix models #10,1,0,0,704.4,0,1,0,532.78,0,0,1,361.47
    5304 
    5305 > fitmap sel inMap #6
    5306 
    5307 Fit molecule
    5308 GeneID_79676129_protein_hypotheticalprotein_0b491_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    5309 (#10) to map volume difference (#6) using 1504 atoms 
    5310 average map value = 0.01161, steps = 120 
    5311 shifted from previous position = 14.1 
    5312 rotated from previous position = 10.8 degrees 
    5313 atoms outside contour = 1181, contour level = 0.017597 
    5314  
    5315 Position of
    5316 GeneID_79676129_protein_hypotheticalprotein_0b491_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    5317 (#10) relative to volume difference (#6) coordinates: 
    5318 Matrix rotation and translation 
    5319 0.99556445 0.01100959 0.09343565 709.18154256 
    5320 -0.02601079 0.98662924 0.16089181 524.19442991 
    5321 -0.09041499 -0.16260850 0.98253937 350.92436839 
    5322 Axis -0.86513487 0.49167061 -0.09900338 
    5323 Axis point 0.00000000 2377.09625346 -4253.99217490 
    5324 Rotation angle (degrees) 10.77573238 
    5325 Shift along axis -390.54938405 
    5326  
    5327 
    5328 > select #6
    5329 
    5330 3 models selected 
    5331 
    5332 > ui mousemode right "rotate selected models"
    5333 
    5334 > select add #10
    5335 
    5336 1504 atoms, 1534 bonds, 191 residues, 4 models selected 
    5337 
    5338 > select subtract #6
    5339 
    5340 1504 atoms, 1534 bonds, 191 residues, 1 model selected 
    5341 
    5342 > view matrix models
    5343 > #10,0.99792,0.064453,0.0027708,709.13,-0.011426,0.21885,-0.97569,520.24,-0.063492,0.97363,0.21913,352.13
    5344 
    5345 > fitmap sel inMap #6
    5346 
    5347 Fit molecule
    5348 GeneID_79676129_protein_hypotheticalprotein_0b491_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    5349 (#10) to map volume difference (#6) using 1504 atoms 
    5350 average map value = 0.01164, steps = 64 
    5351 shifted from previous position = 0.864 
    5352 rotated from previous position = 12 degrees 
    5353 atoms outside contour = 1179, contour level = 0.017597 
    5354  
    5355 Position of
    5356 GeneID_79676129_protein_hypotheticalprotein_0b491_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    5357 (#10) relative to volume difference (#6) coordinates: 
    5358 Matrix rotation and translation 
    5359 0.96634516 0.20815020 0.15116390 709.02991442 
    5360 0.10513850 0.21673070 -0.97055330 520.62564513 
    5361 -0.23478272 0.95378263 0.18755207 352.60572338 
    5362 Axis 0.97912706 0.19637464 -0.05241369 
    5363 Axis point -0.00000000 -53.09714681 421.86055850 
    5364 Rotation angle (degrees) 79.32056219 
    5365 Shift along axis 777.98668483 
    5366  
    5367 
    5368 > select clear
    5369 
    5370 > select add #10
    5371 
    5372 1504 atoms, 1534 bonds, 191 residues, 1 model selected 
    5373 
    5374 > view matrix models
    5375 > #10,0.955,0.2281,0.1896,709.11,0.1588,0.14669,-0.97635,520.64,-0.25051,0.96253,0.10387,352.4
    5376 
    5377 > view matrix models
    5378 > #10,0.8756,-0.0087844,-0.48296,706.96,-0.46172,-0.30895,-0.83148,517.67,-0.14191,0.95104,-0.27458,352.02
    5379 
    5380 > ui mousemode right "translate selected models"
    5381 
    5382 > view matrix models
    5383 > #10,0.8756,-0.0087844,-0.48296,705.21,-0.46172,-0.30895,-0.83148,519.51,-0.14191,0.95104,-0.27458,350.68
    5384 
    5385 > fitmap sel inMap #6
    5386 
    5387 Fit molecule
    5388 GeneID_79676129_protein_hypotheticalprotein_0b491_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    5389 (#10) to map volume difference (#6) using 1504 atoms 
    5390 average map value = 0.0107, steps = 56 
    5391 shifted from previous position = 2.02 
    5392 rotated from previous position = 10.1 degrees 
    5393 atoms outside contour = 1203, contour level = 0.017597 
    5394  
    5395 Position of
    5396 GeneID_79676129_protein_hypotheticalprotein_0b491_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    5397 (#10) relative to volume difference (#6) coordinates: 
    5398 Matrix rotation and translation 
    5399 0.92954309 0.02823106 -0.36763113 705.52435166 
    5400 -0.32350715 -0.41591578 -0.84991599 520.98765465 
    5401 -0.17689762 0.90896483 -0.37747869 351.81023041 
    5402 Axis 0.97508753 -0.10573876 -0.19499646 
    5403 Axis point 0.00000000 149.58522948 433.98580009 
    5404 Rotation angle (degrees) 115.58983150 
    5405 Shift along axis 564.25766187 
    5406  
    5407 
    5408 > select clear
    5409 
    5410 > close #10
    5411 
    5412 > show #11 models
    5413 
    5414 > select add #11
    5415 
    5416 1342 atoms, 1363 bonds, 173 residues, 1 model selected 
    5417 
    5418 > view matrix models #11,1,0,0,672.32,0,1,0,524.02,0,0,1,318.65
    5419 
    5420 > view matrix models #11,1,0,0,666.94,0,1,0,516.02,0,0,1,305.18
    5421 
    5422 > fitmap sel inMap #6
    5423 
    5424 Fit molecule
    5425 GeneID_79676130_protein_hypotheticalprotein_bc422_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    5426 (#11) to map volume difference (#6) using 1342 atoms 
    5427 average map value = 0.008428, steps = 164 
    5428 shifted from previous position = 3.92 
    5429 rotated from previous position = 10.3 degrees 
    5430 atoms outside contour = 1284, contour level = 0.017597 
    5431  
    5432 Position of
    5433 GeneID_79676130_protein_hypotheticalprotein_bc422_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    5434 (#11) relative to volume difference (#6) coordinates: 
    5435 Matrix rotation and translation 
    5436 0.99898034 0.04446570 -0.00781519 664.04273521 
    5437 -0.04514726 0.98396658 -0.17254417 513.07361534 
    5438 0.00001759 0.17272107 0.98497078 305.62453307 
    5439 Axis 0.96769565 -0.02195342 -0.25116363 
    5440 Axis point 0.00000000 -2292.47465097 3257.16275399 
    5441 Rotation angle (degrees) 10.27632016 
    5442 Shift along axis 554.56577996 
    5443  
    5444 
    5445 > select clear
    5446 
    5447 > close #11
    5448 
    5449 > show #12 models
    5450 
    5451 > select add #12
    5452 
    5453 591 atoms, 601 bonds, 74 residues, 1 model selected 
    5454 
    5455 > view matrix models #12,1,0,0,665.76,0,1,0,518.2,0,0,1,312.61
    5456 
    5457 > fitmap sel inMap #6
    5458 
    5459 Fit molecule
    5460 GeneID_79676132_protein_hypotheticalprotein_2f54a_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    5461 (#12) to map volume difference (#6) using 591 atoms 
    5462 average map value = 0.009988, steps = 132 
    5463 shifted from previous position = 9.31 
    5464 rotated from previous position = 34.6 degrees 
    5465 atoms outside contour = 559, contour level = 0.017597 
    5466  
    5467 Position of
    5468 GeneID_79676132_protein_hypotheticalprotein_2f54a_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    5469 (#12) relative to volume difference (#6) coordinates: 
    5470 Matrix rotation and translation 
    5471 0.96306363 -0.20297952 -0.17693997 658.24704924 
    5472 0.08302725 0.84892527 -0.52195054 522.12776725 
    5473 0.25615408 0.48798075 0.83442188 308.82872564 
    5474 Axis 0.88942540 -0.38141688 0.25188019 
    5475 Axis point 0.00000000 55.71534801 1323.35640346 
    5476 Rotation angle (degrees) 34.59303491 
    5477 Shift along axis 464.10113648 
    5478  
    5479 
    5480 > view matrix models
    5481 > #12,0.96306,-0.20298,-0.17694,653.81,0.083027,0.84893,-0.52195,525.53,0.25615,0.48798,0.83442,300.03
    5482 
    5483 > view matrix models
    5484 > #12,0.96306,-0.20298,-0.17694,655.56,0.083027,0.84893,-0.52195,528.3,0.25615,0.48798,0.83442,293.69
    5485 
    5486 > fitmap sel inMap #6
    5487 
    5488 Fit molecule
    5489 GeneID_79676132_protein_hypotheticalprotein_2f54a_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    5490 (#12) to map volume difference (#6) using 591 atoms 
    5491 average map value = 0.009708, steps = 88 
    5492 shifted from previous position = 8.5 
    5493 rotated from previous position = 13.9 degrees 
    5494 atoms outside contour = 565, contour level = 0.017597 
    5495  
    5496 Position of
    5497 GeneID_79676132_protein_hypotheticalprotein_2f54a_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    5498 (#12) relative to volume difference (#6) coordinates: 
    5499 Matrix rotation and translation 
    5500 0.97283616 -0.22744314 -0.04312112 654.47828763 
    5501 0.19825855 0.91474838 -0.35203543 521.82279225 
    5502 0.11951302 0.33392366 0.93499285 298.88665988 
    5503 Axis 0.83294358 -0.19748271 0.51691931 
    5504 Axis point 0.00000000 364.97666976 1728.58936937 
    5505 Rotation angle (degrees) 24.31594875 
    5506 Shift along axis 596.59279816 
    5507  
    5508 
    5509 > ui mousemode right "rotate selected models"
    5510 
    5511 > view matrix models
    5512 > #12,0.76209,0.64722,0.01779,655.34,-0.57521,0.6894,-0.44031,520.81,-0.29724,0.32532,0.89767,298.48
    5513 
    5514 > ui mousemode right "translate selected models"
    5515 
    5516 > view matrix models
    5517 > #12,0.76209,0.64722,0.01779,656.34,-0.57521,0.6894,-0.44031,526.99,-0.29724,0.32532,0.89767,292.72
    5518 
    5519 > fitmap sel inMap #6
    5520 
    5521 Fit molecule
    5522 GeneID_79676132_protein_hypotheticalprotein_2f54a_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    5523 (#12) to map volume difference (#6) using 591 atoms 
    5524 average map value = 0.009607, steps = 140 
    5525 shifted from previous position = 8.2 
    5526 rotated from previous position = 36.2 degrees 
    5527 atoms outside contour = 562, contour level = 0.017597 
    5528  
    5529 Position of
    5530 GeneID_79676132_protein_hypotheticalprotein_2f54a_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    5531 (#12) relative to volume difference (#6) coordinates: 
    5532 Matrix rotation and translation 
    5533 0.99367238 0.10299966 0.04479149 657.34676462 
    5534 -0.08964463 0.96755614 -0.23621804 523.22562654 
    5535 -0.06766866 0.23070802 0.97066717 299.93478050 
    5536 Axis 0.90231840 0.21732532 -0.37227841 
    5537 Axis point 0.00000000 -2013.31746779 1943.95067544 
    5538 Rotation angle (degrees) 14.99512503 
    5539 Shift along axis 595.18701586 
    5540  
    5541 
    5542 > close #12
    5543 
    5544 > show #13 models
    5545 
    5546 > ui mousemode right zoom
    5547 
    5548 > close #13
    5549 
    5550 > show #14 models
    5551 
    5552 > close #14
    5553 
    5554 > show #15 models
    5555 
    5556 > ui mousemode right "translate selected models"
    5557 
    5558 > select add #15
    5559 
    5560 608 atoms, 626 bonds, 74 residues, 1 model selected 
    5561 
    5562 > view matrix models #15,1,0,0,669.06,0,1,0,532.71,0,0,1,295.9
    5563 
    5564 > fitmap sel inMap #6
    5565 
    5566 Fit molecule
    5567 GeneID_79676139_protein_hypotheticalprotein_a7d56_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5568 (#15) to map volume difference (#6) using 608 atoms 
    5569 average map value = 0.009504, steps = 60 
    5570 shifted from previous position = 3.51 
    5571 rotated from previous position = 7.21 degrees 
    5572 atoms outside contour = 518, contour level = 0.017597 
    5573  
    5574 Position of
    5575 GeneID_79676139_protein_hypotheticalprotein_a7d56_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5576 (#15) relative to volume difference (#6) coordinates: 
    5577 Matrix rotation and translation 
    5578 0.99220548 0.09677753 -0.07850096 670.50171427 
    5579 -0.09555849 0.99523963 0.01914838 533.10405089 
    5580 0.07998040 -0.01149769 0.99673012 292.44925184 
    5581 Axis -0.12204973 -0.63116112 -0.76598923 
    5582 Axis point 1634.53462986 -5986.57654586 0.00000000 
    5583 Rotation angle (degrees) 7.21237255 
    5584 Shift along axis -642.32208047 
    5585  
    5586 
    5587 > select clear
    5588 
    5589 > ui mousemode right zoom
    5590 
    5591 > hide #15 models
    5592 
    5593 > show #15 models
    5594 
    5595 > select add #15
    5596 
    5597 608 atoms, 626 bonds, 74 residues, 1 model selected 
    5598 
    5599 > ui mousemode right "translate selected models"
    5600 
    5601 > view matrix models
    5602 > #15,0.99221,0.096778,-0.078501,669.38,-0.095558,0.99524,0.019148,531.78,0.07998,-0.011498,0.99673,290.02
    5603 
    5604 > fitmap sel inMap #6
    5605 
    5606 Fit molecule
    5607 GeneID_79676139_protein_hypotheticalprotein_a7d56_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5608 (#15) to map volume difference (#6) using 608 atoms 
    5609 average map value = 0.01049, steps = 152 
    5610 shifted from previous position = 3.33 
    5611 rotated from previous position = 7.23 degrees 
    5612 atoms outside contour = 503, contour level = 0.017597 
    5613  
    5614 Position of
    5615 GeneID_79676139_protein_hypotheticalprotein_a7d56_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5616 (#15) relative to volume difference (#6) coordinates: 
    5617 Matrix rotation and translation 
    5618 0.98153167 0.04303974 -0.18639519 672.49092479 
    5619 -0.03493989 0.99830584 0.04652594 529.74737859 
    5620 0.18808187 -0.03915405 0.98137260 289.55976896 
    5621 Axis -0.21857784 -0.95532675 -0.19893347 
    5622 Axis point -508.09251238 0.00000000 2824.83898903 
    5623 Rotation angle (degrees) 11.30280944 
    5624 Shift along axis -710.67658387 
    5625  
    5626 
    5627 > ui mousemode right "rotate selected models"
    5628 
    5629 > view matrix models
    5630 > #15,-0.35115,-0.93535,0.042551,674.91,-0.10399,0.084124,0.99101,524.85,-0.93053,0.34357,-0.12681,298.6
    5631 
    5632 > fitmap sel inMap #6
    5633 
    5634 Fit molecule
    5635 GeneID_79676139_protein_hypotheticalprotein_a7d56_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5636 (#15) to map volume difference (#6) using 608 atoms 
    5637 average map value = 0.01022, steps = 76 
    5638 shifted from previous position = 2.07 
    5639 rotated from previous position = 15.2 degrees 
    5640 atoms outside contour = 487, contour level = 0.017597 
    5641  
    5642 Position of
    5643 GeneID_79676139_protein_hypotheticalprotein_a7d56_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5644 (#15) relative to volume difference (#6) coordinates: 
    5645 Matrix rotation and translation 
    5646 -0.31002435 -0.91496685 0.25830325 676.09234552 
    5647 0.10713132 0.23633885 0.96574677 525.21766121 
    5648 -0.94467337 0.32707738 0.02475081 297.83434642 
    5649 Axis -0.37505665 0.70644435 0.60022403 
    5650 Axis point 524.91429580 0.00000000 -385.38196142 
    5651 Rotation angle (degrees) 121.63239237 
    5652 Shift along axis 296.23145062 
    5653  
    5654 
    5655 > select clear
    5656 
    5657 > select add #15
    5658 
    5659 608 atoms, 626 bonds, 74 residues, 1 model selected 
    5660 
    5661 > view matrix models
    5662 > #15,-0.48095,-0.67053,0.56486,674.44,0.70873,0.081927,0.7007,525.56,-0.51612,0.73734,0.43582,294.03
    5663 
    5664 > fitmap sel inMap #6
    5665 
    5666 Fit molecule
    5667 GeneID_79676139_protein_hypotheticalprotein_a7d56_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5668 (#15) to map volume difference (#6) using 608 atoms 
    5669 average map value = 0.01039, steps = 84 
    5670 shifted from previous position = 4.78 
    5671 rotated from previous position = 17.7 degrees 
    5672 atoms outside contour = 502, contour level = 0.017597 
    5673  
    5674 Position of
    5675 GeneID_79676139_protein_hypotheticalprotein_a7d56_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5676 (#15) relative to volume difference (#6) coordinates: 
    5677 Matrix rotation and translation 
    5678 -0.69587264 -0.60887248 0.38083536 670.96897840 
    5679 0.48948389 -0.01407284 0.87189877 526.84812363 
    5680 -0.52551574 0.79314327 0.30782618 294.08958230 
    5681 Axis -0.05522031 0.63549835 0.77012503 
    5682 Axis point 293.31109682 332.58150821 0.00000000 
    5683 Rotation angle (degrees) 134.51208180 
    5684 Shift along axis 524.24574478 
    5685  
    5686 
    5687 > select clear
    5688 
    5689 > close #15
    5690 
    5691 > ui mousemode right zoom
    5692 
    5693 > ui mousemode right clip
    5694 
    5695 > open "/Users/rosheny/Desktop/Ph_D
    5696 > /PHAGE/alphafold/GeneID_79676140_protein_hypotheticalprotein_bf6f1/GeneID_79676140_protein_hypotheticalprotein_bf6f1_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb"
    5697 
    5698 Chain information for
    5699 GeneID_79676140_protein_hypotheticalprotein_bf6f1_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    5700 #7 
    5701 --- 
    5702 Chain | Description 
    5703 A | No description available 
    5704  
    5705 
    5706 > open "/Users/rosheny/Desktop/Ph_D
    5707 > /PHAGE/alphafold/GeneID_79676141_protein_hypotheticalprotein_42742/GeneID_79676141_protein_hypotheticalprotein_42742_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb"
    5708 
    5709 Chain information for
    5710 GeneID_79676141_protein_hypotheticalprotein_42742_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    5711 #8 
    5712 --- 
    5713 Chain | Description 
    5714 A | No description available 
    5715  
    5716 
    5717 > open "/Users/rosheny/Desktop/Ph_D
    5718 > /PHAGE/alphafold/GeneID_79676143_protein_hypotheticalprotein_09f3c/GeneID_79676143_protein_hypotheticalprotein_09f3c_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb"
    5719 
    5720 Chain information for
    5721 GeneID_79676143_protein_hypotheticalprotein_09f3c_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    5722 #10 
    5723 --- 
    5724 Chain | Description 
    5725 A | No description available 
    5726  
    5727 
    5728 > open "/Users/rosheny/Desktop/Ph_D
    5729 > /PHAGE/alphafold/GeneID_79676145_protein_hypotheticalprotein_31b79/GeneID_79676145_protein_hypotheticalprotein_31b79_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb"
    5730 
    5731 Chain information for
    5732 GeneID_79676145_protein_hypotheticalprotein_31b79_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5733 #11 
    5734 --- 
    5735 Chain | Description 
    5736 A | No description available 
    5737  
    5738 
    5739 > open "/Users/rosheny/Desktop/Ph_D
    5740 > /PHAGE/alphafold/GeneID_79676147_protein_hypotheticalprotein_677ae/GeneID_79676147_protein_hypotheticalprotein_677ae_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb"
    5741 
    5742 Chain information for
    5743 GeneID_79676147_protein_hypotheticalprotein_677ae_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    5744 #12 
    5745 --- 
    5746 Chain | Description 
    5747 A | No description available 
    5748  
    5749 
    5750 > open "/Users/rosheny/Desktop/Ph_D
    5751 > /PHAGE/alphafold/GeneID_79676148_protein_hypotheticalprotein_306cc/GeneID_79676148_protein_hypotheticalprotein_306cc_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb"
    5752 
    5753 Chain information for
    5754 GeneID_79676148_protein_hypotheticalprotein_306cc_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5755 #13 
    5756 --- 
    5757 Chain | Description 
    5758 A | No description available 
    5759  
    5760 
    5761 > open "/Users/rosheny/Desktop/Ph_D
    5762 > /PHAGE/alphafold/GeneID_79676149_protein_hypotheticalprotein_2addd/GeneID_79676149_protein_hypotheticalprotein_2addd_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb"
    5763 
    5764 Chain information for
    5765 GeneID_79676149_protein_hypotheticalprotein_2addd_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    5766 #14 
    5767 --- 
    5768 Chain | Description 
    5769 A | No description available 
    5770  
    5771 
    5772 > open "/Users/rosheny/Desktop/Ph_D
    5773 > /PHAGE/alphafold/GeneID_79676150_protein_hypotheticalprotein_59807/GeneID_79676150_protein_hypotheticalprotein_59807_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb"
    5774 
    5775 Chain information for
    5776 GeneID_79676150_protein_hypotheticalprotein_59807_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    5777 #15 
    5778 --- 
    5779 Chain | Description 
    5780 A | No description available 
    5781  
    5782 
    5783 > select add #10
    5784 
    5785 434 atoms, 438 bonds, 56 residues, 1 model selected 
    5786 
    5787 > select add #11
    5788 
    5789 1084 atoms, 1106 bonds, 136 residues, 2 models selected 
    5790 
    5791 > select add #12
    5792 
    5793 1587 atoms, 1618 bonds, 198 residues, 3 models selected 
    5794 
    5795 > select add #13
    5796 
    5797 2295 atoms, 2344 bonds, 281 residues, 4 models selected 
    5798 
    5799 > select add #14
    5800 
    5801 4165 atoms, 4238 bonds, 518 residues, 5 models selected 
    5802 
    5803 > select add #15
    5804 
    5805 4453 atoms, 4531 bonds, 554 residues, 6 models selected 
    5806 
    5807 > select add #8
    5808 
    5809 5172 atoms, 5261 bonds, 646 residues, 7 models selected 
    5810 
    5811 > select add #7
    5812 
    5813 5645 atoms, 5740 bonds, 703 residues, 8 models selected 
    5814 
    5815 > ui mousemode right "translate selected models"
    5816 
    5817 > view matrix models
    5818 > #7,1,0,0,481.87,0,1,0,480.93,0,0,1,509.28,#8,1,0,0,481.87,0,1,0,480.93,0,0,1,509.28,#10,1,0,0,481.87,0,1,0,480.93,0,0,1,509.28,#11,1,0,0,481.87,0,1,0,480.93,0,0,1,509.28,#12,1,0,0,481.87,0,1,0,480.93,0,0,1,509.28,#13,1,0,0,481.87,0,1,0,480.93,0,0,1,509.28,#14,1,0,0,481.87,0,1,0,480.93,0,0,1,509.28,#15,1,0,0,481.87,0,1,0,480.93,0,0,1,509.28
    5819 
    5820 > view matrix models
    5821 > #7,1,0,0,544.79,0,1,0,427.53,0,0,1,319.41,#8,1,0,0,544.79,0,1,0,427.53,0,0,1,319.41,#10,1,0,0,544.79,0,1,0,427.53,0,0,1,319.41,#11,1,0,0,544.79,0,1,0,427.53,0,0,1,319.41,#12,1,0,0,544.79,0,1,0,427.53,0,0,1,319.41,#13,1,0,0,544.79,0,1,0,427.53,0,0,1,319.41,#14,1,0,0,544.79,0,1,0,427.53,0,0,1,319.41,#15,1,0,0,544.79,0,1,0,427.53,0,0,1,319.41
    5822 
    5823 > view matrix models
    5824 > #7,1,0,0,677.42,0,1,0,457.77,0,0,1,336.61,#8,1,0,0,677.42,0,1,0,457.77,0,0,1,336.61,#10,1,0,0,677.42,0,1,0,457.77,0,0,1,336.61,#11,1,0,0,677.42,0,1,0,457.77,0,0,1,336.61,#12,1,0,0,677.42,0,1,0,457.77,0,0,1,336.61,#13,1,0,0,677.42,0,1,0,457.77,0,0,1,336.61,#14,1,0,0,677.42,0,1,0,457.77,0,0,1,336.61,#15,1,0,0,677.42,0,1,0,457.77,0,0,1,336.61
    5825 
    5826 > view matrix models
    5827 > #7,1,0,0,606.66,0,1,0,568.3,0,0,1,347.66,#8,1,0,0,606.66,0,1,0,568.3,0,0,1,347.66,#10,1,0,0,606.66,0,1,0,568.3,0,0,1,347.66,#11,1,0,0,606.66,0,1,0,568.3,0,0,1,347.66,#12,1,0,0,606.66,0,1,0,568.3,0,0,1,347.66,#13,1,0,0,606.66,0,1,0,568.3,0,0,1,347.66,#14,1,0,0,606.66,0,1,0,568.3,0,0,1,347.66,#15,1,0,0,606.66,0,1,0,568.3,0,0,1,347.66
    5828 
    5829 > view matrix models
    5830 > #7,1,0,0,633.64,0,1,0,584.76,0,0,1,363.04,#8,1,0,0,633.64,0,1,0,584.76,0,0,1,363.04,#10,1,0,0,633.64,0,1,0,584.76,0,0,1,363.04,#11,1,0,0,633.64,0,1,0,584.76,0,0,1,363.04,#12,1,0,0,633.64,0,1,0,584.76,0,0,1,363.04,#13,1,0,0,633.64,0,1,0,584.76,0,0,1,363.04,#14,1,0,0,633.64,0,1,0,584.76,0,0,1,363.04,#15,1,0,0,633.64,0,1,0,584.76,0,0,1,363.04
    5831 
    5832 > view matrix models
    5833 > #7,1,0,0,638.8,0,1,0,600.15,0,0,1,364.43,#8,1,0,0,638.8,0,1,0,600.15,0,0,1,364.43,#10,1,0,0,638.8,0,1,0,600.15,0,0,1,364.43,#11,1,0,0,638.8,0,1,0,600.15,0,0,1,364.43,#12,1,0,0,638.8,0,1,0,600.15,0,0,1,364.43,#13,1,0,0,638.8,0,1,0,600.15,0,0,1,364.43,#14,1,0,0,638.8,0,1,0,600.15,0,0,1,364.43,#15,1,0,0,638.8,0,1,0,600.15,0,0,1,364.43
    5834 
    5835 > select clear
    5836 
    5837 > ui mousemode right clip
    5838 
    5839 > select clear
    5840 
    5841 > select add #7
    5842 
    5843 473 atoms, 479 bonds, 57 residues, 1 model selected 
    5844 
    5845 > select add #8
    5846 
    5847 1192 atoms, 1209 bonds, 149 residues, 2 models selected 
    5848 
    5849 > select add #10
    5850 
    5851 1626 atoms, 1647 bonds, 205 residues, 3 models selected 
    5852 
    5853 > select add #11
    5854 
    5855 2276 atoms, 2315 bonds, 285 residues, 4 models selected 
    5856 
    5857 > select add #12
    5858 
    5859 2779 atoms, 2827 bonds, 347 residues, 5 models selected 
    5860 
    5861 > select add #13
    5862 
    5863 3487 atoms, 3553 bonds, 430 residues, 6 models selected 
    5864 
    5865 > select add #14
    5866 
    5867 5357 atoms, 5447 bonds, 667 residues, 7 models selected 
    5868 
    5869 > select add #15
    5870 
    5871 5645 atoms, 5740 bonds, 703 residues, 8 models selected 
    5872 
    5873 > ui mousemode right "translate selected models"
    5874 
    5875 > view matrix models
    5876 > #7,1,0,0,721.36,0,1,0,418.75,0,0,1,341.21,#8,1,0,0,721.36,0,1,0,418.75,0,0,1,341.21,#10,1,0,0,721.36,0,1,0,418.75,0,0,1,341.21,#11,1,0,0,721.36,0,1,0,418.75,0,0,1,341.21,#12,1,0,0,721.36,0,1,0,418.75,0,0,1,341.21,#13,1,0,0,721.36,0,1,0,418.75,0,0,1,341.21,#14,1,0,0,721.36,0,1,0,418.75,0,0,1,341.21,#15,1,0,0,721.36,0,1,0,418.75,0,0,1,341.21
    5877 
    5878 > select clear
    5879 
    5880 > ui mousemode right zoom
    5881 
    5882 > select add #7
    5883 
    5884 473 atoms, 479 bonds, 57 residues, 1 model selected 
    5885 
    5886 > select add #8
    5887 
    5888 1192 atoms, 1209 bonds, 149 residues, 2 models selected 
    5889 
    5890 > select add #10
    5891 
    5892 1626 atoms, 1647 bonds, 205 residues, 3 models selected 
    5893 
    5894 > select add #11
    5895 
    5896 2276 atoms, 2315 bonds, 285 residues, 4 models selected 
    5897 
    5898 > select add #12
    5899 
    5900 2779 atoms, 2827 bonds, 347 residues, 5 models selected 
    5901 
    5902 > select add #13
    5903 
    5904 3487 atoms, 3553 bonds, 430 residues, 6 models selected 
    5905 
    5906 > select add #14
    5907 
    5908 5357 atoms, 5447 bonds, 667 residues, 7 models selected 
    5909 
    5910 > select add #15
    5911 
    5912 5645 atoms, 5740 bonds, 703 residues, 8 models selected 
    5913 
    5914 > ui mousemode right "translate selected models"
    5915 
    5916 > view matrix models
    5917 > #7,1,0,0,732.62,0,1,0,473.41,0,0,1,364.99,#8,1,0,0,732.62,0,1,0,473.41,0,0,1,364.99,#10,1,0,0,732.62,0,1,0,473.41,0,0,1,364.99,#11,1,0,0,732.62,0,1,0,473.41,0,0,1,364.99,#12,1,0,0,732.62,0,1,0,473.41,0,0,1,364.99,#13,1,0,0,732.62,0,1,0,473.41,0,0,1,364.99,#14,1,0,0,732.62,0,1,0,473.41,0,0,1,364.99,#15,1,0,0,732.62,0,1,0,473.41,0,0,1,364.99
    5918 
    5919 > select clear
    5920 
    5921 > select add #7
    5922 
    5923 473 atoms, 479 bonds, 57 residues, 1 model selected 
    5924 
    5925 > select subtract #7
    5926 
    5927 Nothing selected 
    5928 
    5929 > hide #7 models
    5930 
    5931 > hide #8 models
    5932 
    5933 > hide #15 models
    5934 
    5935 > hide #14 models
    5936 
    5937 > hide #13 models
    5938 
    5939 > hide #12 models
    5940 
    5941 > hide #11 models
    5942 
    5943 > ui mousemode right zoom
    5944 
    5945 > select add #10
    5946 
    5947 434 atoms, 438 bonds, 56 residues, 1 model selected 
    5948 
    5949 > ui mousemode right "translate selected models"
    5950 
    5951 > view matrix models #10,1,0,0,727.26,0,1,0,496.31,0,0,1,330.72
    5952 
    5953 > view matrix models #10,1,0,0,722.25,0,1,0,530.53,0,0,1,292.64
    5954 
    5955 > select clear
    5956 
    5957 > ui mousemode right zoom
    5958 
    5959 > select add #10
    5960 
    5961 434 atoms, 438 bonds, 56 residues, 1 model selected 
    5962 
    5963 > ui mousemode right "translate selected models"
    5964 
    5965 > view matrix models #10,1,0,0,701.16,0,1,0,553.19,0,0,1,281.17
    5966 
    5967 > view matrix models #10,1,0,0,671.09,0,1,0,547.95,0,0,1,280
    5968 
    5969 > view matrix models #10,1,0,0,679.06,0,1,0,533.86,0,0,1,294.49
    5970 
    5971 > view matrix models #10,1,0,0,675.82,0,1,0,532.31,0,0,1,297.39
    5972 
    5973 > fitmap sel inMap #6
    5974 
    5975 Fit molecule
    5976 GeneID_79676143_protein_hypotheticalprotein_09f3c_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    5977 (#10) to map volume difference (#6) using 434 atoms 
    5978 average map value = 0.01095, steps = 76 
    5979 shifted from previous position = 1.2 
    5980 rotated from previous position = 19 degrees 
    5981 atoms outside contour = 340, contour level = 0.017597 
    5982  
    5983 Position of
    5984 GeneID_79676143_protein_hypotheticalprotein_09f3c_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    5985 (#10) relative to volume difference (#6) coordinates: 
    5986 Matrix rotation and translation 
    5987 0.96105302 -0.19579714 -0.19503992 674.72257209 
    5988 0.15831436 0.96850628 -0.19217740 531.29927899 
    5989 0.22652517 0.15381505 0.96178338 297.54424220 
    5990 Axis 0.53209282 -0.64831402 0.54457889 
    5991 Axis point -374.00564051 0.00000000 3052.29820183 
    5992 Rotation angle (degrees) 18.97309702 
    5993 Shift along axis 176.60258189 
    5994  
    5995 
    5996 > select clear
    5997 
    5998 > hide #10 models
    5999 
    6000 > show #11 models
    6001 
    6002 > close #10-11
    6003 
    6004 > show #8 models
    6005 
    6006 > select add #8
    6007 
    6008 719 atoms, 730 bonds, 92 residues, 1 model selected 
    6009 
    6010 > view matrix models #8,1,0,0,645.54,0,1,0,518.27,0,0,1,316.61
    6011 
    6012 > fitmap sel inMap #6
    6013 
    6014 Fit molecule
    6015 GeneID_79676141_protein_hypotheticalprotein_42742_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6016 (#8) to map volume difference (#6) using 719 atoms 
    6017 average map value = 0.01054, steps = 208 
    6018 shifted from previous position = 18.2 
    6019 rotated from previous position = 88 degrees 
    6020 atoms outside contour = 708, contour level = 0.017597 
    6021  
    6022 Position of
    6023 GeneID_79676141_protein_hypotheticalprotein_42742_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6024 (#8) relative to volume difference (#6) coordinates: 
    6025 Matrix rotation and translation 
    6026 0.28295821 -0.66940168 0.68690323 659.06655805 
    6027 0.95321053 0.11680477 -0.27883030 506.93669486 
    6028 0.10641589 0.73366071 0.67113159 305.00489361 
    6029 Axis 0.50656386 0.29042619 0.81181629 
    6030 Axis point 45.92903526 383.92943385 0.00000000 
    6031 Rotation angle (degrees) 87.96859465 
    6032 Shift along axis 728.69492960 
    6033  
    6034 
    6035 > view matrix models
    6036 > #8,0.28296,-0.6694,0.6869,718.05,0.95321,0.1168,-0.27883,523.19,0.10642,0.73366,0.67113,337.15
    6037 
    6038 > ui mousemode right "rotate selected models"
    6039 
    6040 > view matrix models
    6041 > #8,-0.15791,-0.34407,0.92557,717.87,0.92027,0.28856,0.26428,523.73,-0.35801,0.89351,0.27107,336.27
    6042 
    6043 > fitmap sel inMap #6
    6044 
    6045 Fit molecule
    6046 GeneID_79676141_protein_hypotheticalprotein_42742_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6047 (#8) to map volume difference (#6) using 719 atoms 
    6048 average map value = 0.01328, steps = 104 
    6049 shifted from previous position = 13.4 
    6050 rotated from previous position = 26.8 degrees 
    6051 atoms outside contour = 515, contour level = 0.017597 
    6052  
    6053 Position of
    6054 GeneID_79676141_protein_hypotheticalprotein_42742_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6055 (#8) relative to volume difference (#6) coordinates: 
    6056 Matrix rotation and translation 
    6057 -0.15995084 -0.28448940 0.94524151 715.40138567 
    6058 0.66964966 0.67226216 0.31564683 524.42425372 
    6059 -0.72524827 0.68346863 0.08297934 350.31550180 
    6060 Axis 0.18779597 0.85288921 0.48714749 
    6061 Axis point 292.25032104 0.00000000 -248.75136835 
    6062 Rotation angle (degrees) 101.67468768 
    6063 Shift along axis 752.28059770 
    6064  
    6065 
    6066 > select clear
    6067 
    6068 > ui mousemode right zoom
    6069 
    6070 > ui mousemode right "rotate selected models"
    6071 
    6072 > select add #8
    6073 
    6074 719 atoms, 730 bonds, 92 residues, 1 model selected 
    6075 
    6076 > view matrix models
    6077 > #8,-0.013063,0.12455,-0.99213,708.91,0.061919,0.99041,0.12352,523.55,0.998,-0.059818,-0.02065,350.61
    6078 
    6079 > fitmap sel inMap #6
    6080 
    6081 Fit molecule
    6082 GeneID_79676141_protein_hypotheticalprotein_42742_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6083 (#8) to map volume difference (#6) using 719 atoms 
    6084 average map value = 0.01382, steps = 92 
    6085 shifted from previous position = 4.93 
    6086 rotated from previous position = 11.3 degrees 
    6087 atoms outside contour = 494, contour level = 0.017597 
    6088  
    6089 Position of
    6090 GeneID_79676141_protein_hypotheticalprotein_42742_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6091 (#8) relative to volume difference (#6) coordinates: 
    6092 Matrix rotation and translation 
    6093 0.09976812 0.12210491 -0.98749012 707.39068100 
    6094 0.22064427 0.96501832 0.14161838 520.99032967 
    6095 0.97023835 -0.23201303 0.06933632 346.80791541 
    6096 Axis -0.18723720 -0.98107276 0.04938084 
    6097 Axis point 98.09102335 0.00000000 508.14746819 
    6098 Rotation angle (degrees) 86.15477995 
    6099 Shift along axis -626.45360537 
    6100  
    6101 
    6102 > select clear
    6103 
    6104 > select add #8
    6105 
    6106 719 atoms, 730 bonds, 92 residues, 1 model selected 
    6107 
    6108 > view matrix models
    6109 > #8,-0.77372,-0.60337,0.19312,714.68,0.04222,0.25504,0.96601,526.29,-0.63212,0.75557,-0.17186,344.46
    6110 
    6111 > fitmap sel inMap #6
    6112 
    6113 Fit molecule
    6114 GeneID_79676141_protein_hypotheticalprotein_42742_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6115 (#8) to map volume difference (#6) using 719 atoms 
    6116 average map value = 0.01393, steps = 84 
    6117 shifted from previous position = 3.68 
    6118 rotated from previous position = 24.2 degrees 
    6119 atoms outside contour = 503, contour level = 0.017597 
    6120  
    6121 Position of
    6122 GeneID_79676141_protein_hypotheticalprotein_42742_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6123 (#8) relative to volume difference (#6) coordinates: 
    6124 Matrix rotation and translation 
    6125 -0.88671048 -0.43385266 0.15973864 714.08380376 
    6126 0.21032377 -0.07085685 0.97506064 525.15759438 
    6127 -0.41171406 0.89819331 0.15407904 347.48133034 
    6128 Axis -0.08891121 0.66099019 0.74510856 
    6129 Axis point 352.37144509 224.72899412 0.00000000 
    6130 Rotation angle (degrees) 154.38828198 
    6131 Shift along axis 542.54527507 
    6132  
    6133 
    6134 > select clear
    6135 
    6136 > close #8
    6137 
    6138 > show #7 models
    6139 
    6140 > ui mousemode right zoom
    6141 
    6142 > close #7
    6143 
    6144 > show #12 models
    6145 
    6146 > select add #12
    6147 
    6148 503 atoms, 512 bonds, 62 residues, 1 model selected 
    6149 
    6150 > ui mousemode right "translate selected models"
    6151 
    6152 > view matrix models #12,1,0,0,729.17,0,1,0,531.34,0,0,1,362.95
    6153 
    6154 > view matrix models #12,1,0,0,721.38,0,1,0,521.19,0,0,1,352.64
    6155 
    6156 > fitmap sel inMap #6
    6157 
    6158 Fit molecule
    6159 GeneID_79676147_protein_hypotheticalprotein_677ae_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    6160 (#12) to map volume difference (#6) using 503 atoms 
    6161 average map value = 0.01417, steps = 136 
    6162 shifted from previous position = 7.51 
    6163 rotated from previous position = 28.1 degrees 
    6164 atoms outside contour = 340, contour level = 0.017597 
    6165  
    6166 Position of
    6167 GeneID_79676147_protein_hypotheticalprotein_677ae_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    6168 (#12) relative to volume difference (#6) coordinates: 
    6169 Matrix rotation and translation 
    6170 0.93952264 -0.27272393 -0.20716869 715.18078701 
    6171 0.32690897 0.89447380 0.30503629 526.83229533 
    6172 0.10211627 -0.35431381 0.92953429 353.93129647 
    6173 Axis -0.69892567 -0.32784890 0.63562411 
    6174 Axis point 0.00000000 1917.78062857 -582.57655205 
    6175 Rotation angle (degrees) 28.14394282 
    6176 Shift along axis -447.61232791 
    6177  
    6178 
    6179 > select clear
    6180 
    6181 > ui mousemode right zoom
    6182 
    6183 > ui mousemode right "translate selected models"
    6184 
    6185 > select add #12
    6186 
    6187 503 atoms, 512 bonds, 62 residues, 1 model selected 
    6188 
    6189 > view matrix models
    6190 > #12,0.93952,-0.27272,-0.20717,710.4,0.32691,0.89447,0.30504,532.96,0.10212,-0.35431,0.92953,349.9
    6191 
    6192 > fitmap sel inMap #6
    6193 
    6194 Fit molecule
    6195 GeneID_79676147_protein_hypotheticalprotein_677ae_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    6196 (#12) to map volume difference (#6) using 503 atoms 
    6197 average map value = 0.01346, steps = 156 
    6198 shifted from previous position = 5.32 
    6199 rotated from previous position = 19.3 degrees 
    6200 atoms outside contour = 360, contour level = 0.017597 
    6201  
    6202 Position of
    6203 GeneID_79676147_protein_hypotheticalprotein_677ae_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    6204 (#12) relative to volume difference (#6) coordinates: 
    6205 Matrix rotation and translation 
    6206 0.78666227 -0.55668612 -0.26695137 713.07518880 
    6207 0.61645733 0.73193449 0.29026242 530.83476208 
    6208 0.03380585 -0.39290262 0.91895848 353.01752335 
    6209 Axis -0.49131594 -0.21629739 0.84369668 
    6210 Axis point -265.37855732 1234.95384019 -0.00000000 
    6211 Rotation angle (degrees) 44.04634932 
    6212 Shift along axis -167.32366675 
    6213  
    6214 
    6215 > view matrix models
    6216 > #12,0.78666,-0.55669,-0.26695,711.89,0.61646,0.73193,0.29026,532.81,0.033806,-0.3929,0.91896,351.79
    6217 
    6218 > view matrix models
    6219 > #12,0.78666,-0.55669,-0.26695,710.28,0.61646,0.73193,0.29026,531.56,0.033806,-0.3929,0.91896,352.6
    6220 
    6221 > fitmap sel inMap #6
    6222 
    6223 Fit molecule
    6224 GeneID_79676147_protein_hypotheticalprotein_677ae_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    6225 (#12) to map volume difference (#6) using 503 atoms 
    6226 average map value = 0.01346, steps = 72 
    6227 shifted from previous position = 2.93 
    6228 rotated from previous position = 0.0872 degrees 
    6229 atoms outside contour = 360, contour level = 0.017597 
    6230  
    6231 Position of
    6232 GeneID_79676147_protein_hypotheticalprotein_677ae_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    6233 (#12) relative to volume difference (#6) coordinates: 
    6234 Matrix rotation and translation 
    6235 0.78672247 -0.55726234 -0.26556813 713.09278537 
    6236 0.61645247 0.73184255 0.29050443 530.84790541 
    6237 0.03246687 -0.39225649 0.91928273 352.99101293 
    6238 Axis -0.49113215 -0.21438627 0.84429126 
    6239 Axis point -266.09963667 1235.17569422 0.00000000 
    6240 Rotation angle (degrees) 44.03429469 
    6241 Shift along axis -166.00207177 
    6242  
    6243 
    6244 > select clear
    6245 
    6246 > ui mousemode right zoom
    6247 
    6248 > close #12
    6249 
    6250 > show #13 models
    6251 
    6252 > show #!3 models
    6253 
    6254 > hide #!3 models
    6255 
    6256 > show #!5 models
    6257 
    6258 > hide #!5 models
    6259 
    6260 > show #!5 models
    6261 
    6262 > hide #!5 models
    6263 
    6264 > show #!5 models
    6265 
    6266 > hide #!5 models
    6267 
    6268 > hide #13 models
    6269 
    6270 > show #13 models
    6271 
    6272 > ui mousemode right "translate selected models"
    6273 
    6274 > select add #13
    6275 
    6276 708 atoms, 726 bonds, 83 residues, 1 model selected 
    6277 
    6278 > view matrix models #13,1,0,0,714.62,0,1,0,482.12,0,0,1,299.67
    6279 
    6280 > fitmap sel inMap #6
    6281 
    6282 Fit molecule
    6283 GeneID_79676148_protein_hypotheticalprotein_306cc_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    6284 (#13) to map volume difference (#6) using 708 atoms 
    6285 average map value = 0.009929, steps = 112 
    6286 shifted from previous position = 9.87 
    6287 rotated from previous position = 34.6 degrees 
    6288 atoms outside contour = 603, contour level = 0.017597 
    6289  
    6290 Position of
    6291 GeneID_79676148_protein_hypotheticalprotein_306cc_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    6292 (#13) relative to volume difference (#6) coordinates: 
    6293 Matrix rotation and translation 
    6294 0.99899872 0.02288778 -0.03844088 706.68655676 
    6295 0.00290344 0.82425200 0.56621569 476.18272680 
    6296 0.04464439 -0.56576036 0.82336025 300.84821245 
    6297 Axis -0.99716262 -0.07319017 -0.01760429 
    6298 Axis point 0.00000000 675.62097239 -535.00724565 
    6299 Rotation angle (degrees) 34.58293217 
    6300 Shift along axis -744.82953211 
    6301  
    6302 
    6303 > select clear
    6304 
    6305 > ui mousemode right zoom
    6306 
    6307 > close #13
    6308 
    6309 > show #14 models
    6310 
    6311 > close #14
    6312 
    6313 > show #15 models
    6314 
    6315 > close #15
    6316 
    6317 > open "/Users/rosheny/Desktop/Ph_D
    6318 > /PHAGE/alphafold/GeneID_79676151_protein_hypotheticalprotein_9d7cf/GeneID_79676151_protein_hypotheticalprotein_9d7cf_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb"
    6319 
    6320 Chain information for
    6321 GeneID_79676151_protein_hypotheticalprotein_9d7cf_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    6322 #7 
    6323 --- 
    6324 Chain | Description 
    6325 A | No description available 
    6326  
    6327 
    6328 > open "/Users/rosheny/Desktop/Ph_D
    6329 > /PHAGE/alphafold/GeneID_79676153_protein_hypotheticalprotein_f276c/GeneID_79676153_protein_hypotheticalprotein_f276c_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb"
    6330 
    6331 Chain information for
    6332 GeneID_79676153_protein_hypotheticalprotein_f276c_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    6333 #8 
    6334 --- 
    6335 Chain | Description 
    6336 A | No description available 
    6337  
    6338 
    6339 > open "/Users/rosheny/Desktop/Ph_D
    6340 > /PHAGE/alphafold/GeneID_79676154_protein_hypotheticalprotein_16e8e/GeneID_79676154_protein_hypotheticalprotein_16e8e_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb"
    6341 
    6342 Chain information for
    6343 GeneID_79676154_protein_hypotheticalprotein_16e8e_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6344 #10 
    6345 --- 
    6346 Chain | Description 
    6347 A | No description available 
    6348  
    6349 
    6350 > open "/Users/rosheny/Desktop/Ph_D
    6351 > /PHAGE/alphafold/GeneID_79676155_protein_hypotheticalprotein_8d028/GeneID_79676155_protein_hypotheticalprotein_8d028_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb"
    6352 
    6353 Chain information for
    6354 GeneID_79676155_protein_hypotheticalprotein_8d028_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
    6355 #11 
    6356 --- 
    6357 Chain | Description 
    6358 A | No description available 
    6359  
    6360 
    6361 > open "/Users/rosheny/Desktop/Ph_D
    6362 > /PHAGE/alphafold/GeneID_79676157_protein_hypotheticalprotein_9e6cc/GeneID_79676157_protein_hypotheticalprotein_9e6cc_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb"
    6363 
    6364 Chain information for
    6365 GeneID_79676157_protein_hypotheticalprotein_9e6cc_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
    6366 #12 
    6367 --- 
    6368 Chain | Description 
    6369 A | No description available 
    6370  
    6371 
    6372 > open "/Users/rosheny/Desktop/Ph_D
    6373 > /PHAGE/alphafold/GeneID_79676158_protein_hypotheticalprotein_2332e/GeneID_79676158_protein_hypotheticalprotein_2332e_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb"
    6374 
    6375 Chain information for
    6376 GeneID_79676158_protein_hypotheticalprotein_2332e_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6377 #13 
    6378 --- 
    6379 Chain | Description 
    6380 A | No description available 
    6381  
    6382 
    6383 > open "/Users/rosheny/Desktop/Ph_D
    6384 > /PHAGE/alphafold/GeneID_79676159_protein_hypotheticalprotein_41355/GeneID_79676159_protein_hypotheticalprotein_41355_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb"
    6385 
    6386 Chain information for
    6387 GeneID_79676159_protein_hypotheticalprotein_41355_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
    6388 #14 
    6389 --- 
    6390 Chain | Description 
    6391 A | No description available 
    6392  
    6393 
    6394 > open "/Users/rosheny/Desktop/Ph_D
    6395 > /PHAGE/alphafold/GeneID_79676160_protein_hypotheticalprotein_ef41f/GeneID_79676160_protein_hypotheticalprotein_ef41f_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb"
    6396 
    6397 Chain information for
    6398 GeneID_79676160_protein_hypotheticalprotein_ef41f_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6399 #15 
    6400 --- 
    6401 Chain | Description 
    6402 A | No description available 
    6403  
    6404 
    6405 > open "/Users/rosheny/Desktop/Ph_D
    6406 > /PHAGE/alphafold/GeneID_79676161_protein_hypotheticalprotein_86754/GeneID_79676161_protein_hypotheticalprotein_86754_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb"
    6407 
    6408 Chain information for
    6409 GeneID_79676161_protein_hypotheticalprotein_86754_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6410 #16 
    6411 --- 
    6412 Chain | Description 
    6413 A | No description available 
    6414  
    6415 
    6416 > open "/Users/rosheny/Desktop/Ph_D
    6417 > /PHAGE/alphafold/GeneID_79676165_protein_hypotheticalprotein_f1234/GeneID_79676165_protein_hypotheticalprotein_f1234_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb"
    6418 
    6419 Chain information for
    6420 GeneID_79676165_protein_hypotheticalprotein_f1234_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
    6421 #17 
    6422 --- 
    6423 Chain | Description 
    6424 A | No description available 
    6425  
    6426 
    6427 > open "/Users/rosheny/Desktop/Ph_D
    6428 > /PHAGE/alphafold/GeneID_79676166_protein_hypotheticalprotein_bafdb/GeneID_79676166_protein_hypotheticalprotein_bafdb_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb"
    6429 
    6430 Chain information for
    6431 GeneID_79676166_protein_hypotheticalprotein_bafdb_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
    6432 #18 
    6433 --- 
    6434 Chain | Description 
    6435 A | No description available 
    6436  
    6437 
    6438 > ui mousemode right clip
    6439 
    6440 > ui mousemode right zoom
    6441 
    6442 > select add #8
    6443 
    6444 448 atoms, 458 bonds, 61 residues, 1 model selected 
    6445 
    6446 > select add #10
    6447 
    6448 1239 atoms, 1260 bonds, 162 residues, 2 models selected 
    6449 
    6450 > select add #11
    6451 
    6452 1998 atoms, 2040 bonds, 251 residues, 3 models selected 
    6453 
    6454 > select add #12
    6455 
    6456 2382 atoms, 2428 bonds, 301 residues, 4 models selected 
    6457 
    6458 > select add #13
    6459 
    6460 3892 atoms, 3967 bonds, 485 residues, 5 models selected 
    6461 
    6462 > select add #15
    6463 
    6464 4139 atoms, 4218 bonds, 518 residues, 6 models selected 
    6465 
    6466 > select add #14
    6467 
    6468 4532 atoms, 4620 bonds, 566 residues, 7 models selected 
    6469 
    6470 > select add #16
    6471 
    6472 5359 atoms, 5475 bonds, 665 residues, 8 models selected 
    6473 
    6474 > select add #17
    6475 
    6476 5751 atoms, 5877 bonds, 720 residues, 9 models selected 
    6477 
    6478 > select add #18
    6479 
    6480 8757 atoms, 8947 bonds, 1100 residues, 10 models selected 
    6481 
    6482 > select add #7
    6483 
    6484 9631 atoms, 9831 bonds, 1209 residues, 11 models selected 
    6485 
    6486 > ui mousemode right "translate selected models"
    6487 
    6488 > view matrix models
    6489 > #7,1,0,0,699.68,0,1,0,397.4,0,0,1,275.18,#8,1,0,0,699.68,0,1,0,397.4,0,0,1,275.18,#10,1,0,0,699.68,0,1,0,397.4,0,0,1,275.18,#11,1,0,0,699.68,0,1,0,397.4,0,0,1,275.18,#12,1,0,0,699.68,0,1,0,397.4,0,0,1,275.18,#13,1,0,0,699.68,0,1,0,397.4,0,0,1,275.18,#14,1,0,0,699.68,0,1,0,397.4,0,0,1,275.18,#15,1,0,0,699.68,0,1,0,397.4,0,0,1,275.18,#16,1,0,0,699.68,0,1,0,397.4,0,0,1,275.18,#17,1,0,0,699.68,0,1,0,397.4,0,0,1,275.18,#18,1,0,0,699.68,0,1,0,397.4,0,0,1,275.18
    6490 
    6491 > view matrix models
    6492 > #7,1,0,0,699.99,0,1,0,397.82,0,0,1,277.72,#8,1,0,0,699.99,0,1,0,397.82,0,0,1,277.72,#10,1,0,0,699.99,0,1,0,397.82,0,0,1,277.72,#11,1,0,0,699.99,0,1,0,397.82,0,0,1,277.72,#12,1,0,0,699.99,0,1,0,397.82,0,0,1,277.72,#13,1,0,0,699.99,0,1,0,397.82,0,0,1,277.72,#14,1,0,0,699.99,0,1,0,397.82,0,0,1,277.72,#15,1,0,0,699.99,0,1,0,397.82,0,0,1,277.72,#16,1,0,0,699.99,0,1,0,397.82,0,0,1,277.72,#17,1,0,0,699.99,0,1,0,397.82,0,0,1,277.72,#18,1,0,0,699.99,0,1,0,397.82,0,0,1,277.72
    6493 
    6494 > ui mousemode right zoom
     1603[deleted to fit within ticket limits]
    64951604
    64961605> select clear