Changes between Version 5 and Version 6 of Ticket #15688, comment 2


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Timestamp:
Jul 26, 2024, 1:32:53 PM (15 months ago)
Author:
Tom Goddard

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  • Ticket #15688, comment 2

    v5 v6  
    1010
    1111Trimming chains but using Python instead of the deleting command, took 328 seconds.  PDB 8j07 with hundreds of chains took the most time.  The Python code looped through chains and did chain.residues.delete().  Maybe that caused a lot of costly chain recomputations.  Try deleting all the extra chain residues as a single collection.  That took 57 seconds.
     12
     13Trimming chains and sequences in Python took 56 seconds.  Strange it is faster than just trimming chains.  Probably just timing noise.  Trimming the sequence ends apparently takes little time.