Changes between Initial Version and Version 1 of Ticket #15680


Ignore:
Timestamp:
Jul 26, 2024, 10:50:10 AM (15 months ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #15680

    • Property Cc Tom Goddard added
    • Property Component Unassigned → Structure Analysis
    • Property Owner set to Eric Pettersen
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → accepted
    • Property Summary ChimeraX bug report submission → Crash in chem_group.find_group

  • Ticket #15680 – Description

    initial v1  
    22792279> hide #!1 models
    22802280
    2281 > select #9/C:462
    2282 
    2283 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2284 
    2285 > select add #9/C:463
    2286 
    2287 44 atoms, 48 bonds, 2 residues, 1 model selected 
    2288 
    2289 > select add #9/C:464
    2290 
    2291 66 atoms, 72 bonds, 3 residues, 1 model selected 
    2292 
    2293 > select add #9/C:465
    2294 
    2295 88 atoms, 96 bonds, 4 residues, 1 model selected 
    2296 
    2297 > select add #9/C:466
    2298 
    2299 111 atoms, 121 bonds, 5 residues, 1 model selected 
    2300 
    2301 > show #!1 models
    2302 
    2303 > hide #!1 models
    2304 
    2305 > select subtract #9/C:463
    2306 
    2307 89 atoms, 97 bonds, 4 residues, 1 model selected 
    2308 
    2309 > select subtract #9/C:462
    2310 
    2311 67 atoms, 73 bonds, 3 residues, 1 model selected 
    2312 
    2313 > select add #9/C:463
    2314 
    2315 89 atoms, 97 bonds, 4 residues, 1 model selected 
    2316 
    2317 > show #!1 models
    2318 
    2319 > hide #!1 models
    2320 
    2321 > select subtract #9/C:463
    2322 
    2323 67 atoms, 73 bonds, 3 residues, 1 model selected 
    2324 
    2325 > show #!1 models
    2326 
    2327 > hide #!1 models
    2328 
    2329 > select subtract #9/C:464
    2330 
    2331 45 atoms, 49 bonds, 2 residues, 1 model selected 
    2332 
    2333 > show #!1 models
    2334 
    2335 > hide #!1 models
    2336 
    2337 > select subtract #9/C:465
    2338 
    2339 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2340 
    2341 > show #!1 models
    2342 
    2343 > hide #!1 models
    2344 
    2345 > select add #9/C:465
    2346 
    2347 45 atoms, 49 bonds, 2 residues, 1 model selected 
    2348 
    2349 > select add #9/C:464
    2350 
    2351 67 atoms, 73 bonds, 3 residues, 1 model selected 
    2352 
    2353 > show #!1 models
    2354 
    2355 > select clear
    2356 
    2357 > hide #!9 models
    2358 
    2359 > hide #!1 models
    2360 
    2361 > show #7 models
    2362 
    2363 > hide #7 models
    2364 
    2365 > show #!4 models
    2366 
    2367 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_e/fold_r_e_model_0.cif
    2368 
    2369 Chain information for fold_r_e_model_0.cif #10 
    2370 --- 
    2371 Chain | Description 
    2372 A | . 
    2373  
    2374 
    2375 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_e/fold_r_e_model_1.cif
    2376 
    2377 Chain information for fold_r_e_model_1.cif #11 
    2378 --- 
    2379 Chain | Description 
    2380 A | . 
    2381  
    2382 
    2383 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_e/fold_r_e_model_2.cif
    2384 
    2385 Chain information for fold_r_e_model_2.cif #12 
    2386 --- 
    2387 Chain | Description 
    2388 A | . 
    2389  
    2390 
    2391 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_e/fold_r_e_model_3.cif
    2392 
    2393 Chain information for fold_r_e_model_3.cif #13 
    2394 --- 
    2395 Chain | Description 
    2396 A | . 
    2397  
    2398 
    2399 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_e/fold_r_e_model_4.cif
    2400 
    2401 Chain information for fold_r_e_model_4.cif #14 
    2402 --- 
    2403 Chain | Description 
    2404 A | . 
    2405  
    2406 
    2407 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_e_m/fold_r_e_m_model_0.cif
    2408 
    2409 Chain information for fold_r_e_m_model_0.cif #15 
    2410 --- 
    2411 Chain | Description 
    2412 B | . 
    2413  
    2414 
    2415 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_e_m/fold_r_e_m_model_1.cif
    2416 
    2417 Chain information for fold_r_e_m_model_1.cif #16 
    2418 --- 
    2419 Chain | Description 
    2420 B | . 
    2421  
    2422 
    2423 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_e_m/fold_r_e_m_model_2.cif
    2424 
    2425 Chain information for fold_r_e_m_model_2.cif #17 
    2426 --- 
    2427 Chain | Description 
    2428 B | . 
    2429  
    2430 
    2431 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_e_m/fold_r_e_m_model_3.cif
    2432 
    2433 Chain information for fold_r_e_m_model_3.cif #18 
    2434 --- 
    2435 Chain | Description 
    2436 B | . 
    2437  
    2438 
    2439 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_e_m/fold_r_e_m_model_4.cif
    2440 
    2441 Chain information for fold_r_e_m_model_4.cif #19 
    2442 --- 
    2443 Chain | Description 
    2444 B | . 
    2445  
    2446 
    2447 > hide #!4 models
    2448 
    2449 > hide #11 models
    2450 
    2451 > hide #12 models
    2452 
    2453 > hide #13 models
    2454 
    2455 > hide #14 models
    2456 
    2457 > hide #15 models
    2458 
    2459 > hide #16 models
    2460 
    2461 > hide #17 models
    2462 
    2463 > hide #18 models
    2464 
    2465 > hide #19 models
    2466 
    2467 > show #11 models
    2468 
    2469 > hide #10 models
    2470 
    2471 > show #12 models
    2472 
    2473 > hide #11 models
    2474 
    2475 > hide #12 models
    2476 
    2477 > show #13 models
    2478 
    2479 > show #14 models
    2480 
    2481 > hide #13 models
    2482 
    2483 > show #15 models
    2484 
    2485 > hide #14 models
    2486 
    2487 > close #15
    2488 
    2489 > show #16 models
    2490 
    2491 > show #!3 models
    2492 
    2493 > hide #16 models
    2494 
    2495 > show #14 models
    2496 
    2497 > hide #!3 models
    2498 
    2499 > show #16 models
    2500 
    2501 > hide #14 models
    2502 
    2503 > show #!3 models
    2504 
    2505 > hide #!3 models
    2506 
    2507 > show #17 models
    2508 
    2509 > hide #16 models
    2510 
    2511 > show #18 models
    2512 
    2513 > hide #17 models
    2514 
    2515 > hide #18 models
    2516 
    2517 > show #19 models
    2518 
    2519 > show #!4 models
    2520 
    2521 > hide #19 models
    2522 
    2523 > hide #!4 models
    2524 
    2525 > show #!1 models
    2526 
    2527 > close #3
    2528 
    2529 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-5-coot-0.pdb
    2530 
    2531 Chain information for R-combine-new-5-coot-0.pdb #3 
    2532 --- 
    2533 Chain | Description 
    2534 A C E | No description available 
    2535 B | No description available 
    2536 H | No description available 
    2537  
    2538 
    2539 > show #!2 models
    2540 
    2541 > hide #!1 models
    2542 
    2543 > select #3/E:399@C1'
    2544 
    2545 1 atom, 1 residue, 1 model selected 
    2546 
    2547 > ui mousemode right "translate selected models"
    2548 
    2549 > view matrix models #3,1,0,0,15.391,0,1,0,-111.14,0,0,1,2.6748
    2550 
    2551 > ui mousemode right "rotate selected models"
    2552 
    2553 > view matrix models
    2554 > #3,-0.43036,0.79861,0.42074,-25.796,0.054189,0.48812,-0.87109,254.25,-0.90103,-0.35208,-0.25334,622.74
    2555 
    2556 > view matrix models
    2557 > #3,0.067834,0.54249,-0.83732,239.04,0.81557,-0.51356,-0.26666,281.75,-0.57468,-0.6648,-0.47727,706.62
    2558 
    2559 > view matrix models
    2560 > #3,0.30377,0.95269,-0.010786,-148.17,0.95167,-0.30287,0.050895,104.26,0.045221,-0.025725,-0.99865,465.06
    2561 
    2562 > view matrix models
    2563 > #3,-0.59391,0.77108,-0.22958,172.43,0.80402,0.55864,-0.20366,-98.201,-0.028787,-0.30554,-0.95174,567.31
    2564 
    2565 > view matrix models
    2566 > #3,-0.39636,0.78991,-0.46791,175.64,0.91488,0.38246,-0.12933,-80.613,0.076801,-0.47934,-0.87426,584.57
    2567 
    2568 > ui mousemode right "translate selected models"
    2569 
    2570 > view matrix models
    2571 > #3,-0.39636,0.78991,-0.46791,144.59,0.91488,0.38246,-0.12933,-84.708,0.076801,-0.47934,-0.87426,581.86
    2572 
    2573 > view matrix models
    2574 > #3,-0.39636,0.78991,-0.46791,141.24,0.91488,0.38246,-0.12933,-111.63,0.076801,-0.47934,-0.87426,550.16
    2575 
    2576 > view matrix models
    2577 > #3,-0.39636,0.78991,-0.46791,135.36,0.91488,0.38246,-0.12933,-119.33,0.076801,-0.47934,-0.87426,550.93
    2578 
    2579 > fitmap #3 inMap #2
    2580 
    2581 Fit molecule R-combine-new-5-coot-0.pdb (#3) to map
    2582 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 11436 atoms 
    2583 average map value = 4.709, steps = 188 
    2584 shifted from previous position = 5.99 
    2585 rotated from previous position = 13 degrees 
    2586 atoms outside contour = 5139, contour level = 3.0813 
    2587  
    2588 Position of R-combine-new-5-coot-0.pdb (#3) relative to
    2589 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    2590 Matrix rotation and translation 
    2591 -0.41961369 0.64793245 -0.63569480 231.71962100 
    2592 0.89959345 0.39025554 -0.19604141 -98.64878510 
    2593 0.12106183 -0.65412854 -0.74663236 569.49521585 
    2594 Axis -0.49808039 -0.82282520 0.27363224 
    2595 Axis point 66.35267423 0.00000000 311.60398600 
    2596 Rotation angle (degrees) 152.62240305 
    2597 Shift along axis 121.58795967 
    2598  
    2599 
    2600 > view matrix models
    2601 > #3,-0.41961,0.64793,-0.63569,236.19,0.89959,0.39026,-0.19604,-91.184,0.12106,-0.65413,-0.74663,572.17
    2602 
    2603 > fitmap #3 inMap #2
    2604 
    2605 Fit molecule R-combine-new-5-coot-0.pdb (#3) to map
    2606 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 11436 atoms 
    2607 average map value = 4.709, steps = 148 
    2608 shifted from previous position = 9.1 
    2609 rotated from previous position = 0.00329 degrees 
    2610 atoms outside contour = 5140, contour level = 3.0813 
    2611  
    2612 Position of R-combine-new-5-coot-0.pdb (#3) relative to
    2613 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    2614 Matrix rotation and translation 
    2615 -0.41962582 0.64789351 -0.63572649 231.74592504 
    2616 0.89958812 0.39025211 -0.19607268 -98.64046689 
    2617 0.12105939 -0.65416916 -0.74659717 569.50157828 
    2618 Axis -0.49807002 -0.82282308 0.27365751 
    2619 Axis point 66.35832087 0.00000000 311.61270117 
    2620 Rotation angle (degrees) 152.62117954 
    2621 Shift along axis 121.58633897 
    2622  
    2623 
    2624 > select up
    2625 
    2626 20 atoms, 21 bonds, 1 residue, 1 model selected 
    2627 
    2628 > select up
    2629 
    2630 1104 atoms, 1237 bonds, 52 residues, 1 model selected 
    2631 
    2632 > select up
    2633 
    2634 11436 atoms, 12808 bonds, 534 residues, 1 model selected 
    2635 
    2636 > style sel stick
    2637 
    2638 Changed 11436 atom styles 
    2639 
    2640 > cartoon sel
    2641 
    2642 > hide #!2 models
    2643 
    2644 > hide #!3 models
    2645 
    2646 > show #!4 models
    2647 
    2648 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R_mid_2.pdb
    2649 
    2650 Chain information for R_mid_2.pdb #15 
    2651 --- 
    2652 Chain | Description 
    2653 B | No description available 
    2654  
    2655 
    2656 > show #!6 models
    2657 
    2658 > close #15
    2659 
    2660 > color #6 #ba5bdbff
    2661 
    2662 > select #4/B:387
    2663 
    2664 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2665 
    2666 > select add #4/B:392
    2667 
    2668 42 atoms, 45 bonds, 2 residues, 1 model selected 
    2669 
    2670 > select clear
    2671 
    2672 Drag select of 43 residues, 82 shapes 
    2673 
    2674 > delete atoms sel
    2675 
    2676 > delete bonds sel
    2677 
    2678 Drag select of 8 residues, 1 pseudobonds, 17 shapes 
    2679 
    2680 > delete atoms (#!4 & sel)
    2681 
    2682 > delete bonds (#!4 & sel)
    2683 
    2684 > select add #4/B:413
    2685 
    2686 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2687 
    2688 > select add #4/B:414
    2689 
    2690 43 atoms, 46 bonds, 2 residues, 1 model selected 
    2691 
    2692 > delete atoms sel
    2693 
    2694 > delete bonds sel
    2695 
    2696 > delete atoms sel
    2697 
    2698 > delete bonds sel
    2699 
    2700 > show #!2 models
    2701 
    2702 > select clear
    2703 
    2704 > select #6/B:359
    2705 
    2706 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2707 
    2708 > view matrix models
    2709 > #6,0.82245,-0.4005,-0.40395,296.01,-0.38298,0.13521,-0.91381,357.11,0.4206,0.90626,-0.042185,271.28
    2710 
    2711 > view matrix models
    2712 > #6,0.82245,-0.4005,-0.40395,173.15,-0.38298,0.13521,-0.91381,352.4,0.4206,0.90626,-0.042185,232.01
    2713 
    2714 > view matrix models
    2715 > #6,0.82245,-0.4005,-0.40395,155.57,-0.38298,0.13521,-0.91381,224.72,0.4206,0.90626,-0.042185,138.61
    2716 
    2717 > view matrix models
    2718 > #6,0.82245,-0.4005,-0.40395,196.28,-0.38298,0.13521,-0.91381,253.93,0.4206,0.90626,-0.042185,216.46
    2719 
    2720 > view matrix models
    2721 > #6,0.82245,-0.4005,-0.40395,196.09,-0.38298,0.13521,-0.91381,215.85,0.4206,0.90626,-0.042185,227.29
    2722 
    2723 > view matrix models
    2724 > #6,0.82245,-0.4005,-0.40395,175.78,-0.38298,0.13521,-0.91381,188.2,0.4206,0.90626,-0.042185,246.49
    2725 
    2726 > ui mousemode right "rotate selected models"
    2727 
    2728 > view matrix models
    2729 > #6,0.3642,-0.55537,-0.74761,168.37,-0.8995,-0.41781,-0.12781,192.13,-0.24138,0.71902,-0.65172,234.76
    2730 
    2731 > view matrix models
    2732 > #6,0.49153,-0.6895,-0.53197,170.11,-0.86805,-0.33883,-0.36289,189.83,0.069965,0.64014,-0.76506,232.93
    2733 
    2734 > view matrix models
    2735 > #6,0.26057,-0.59304,-0.76184,167.57,-0.94872,-0.010993,-0.31593,193.94,0.17898,0.80509,-0.5655,237.73
    2736 
    2737 > view matrix models
    2738 > #6,0.051678,-0.72074,-0.69128,166.74,-0.98605,0.072853,-0.14967,197.04,0.15824,0.68937,-0.70692,234.5
    2739 
    2740 > view matrix models
    2741 > #6,0.0050157,-0.89416,-0.44772,168.03,-0.93875,0.15007,-0.31022,195.81,0.34457,0.42185,-0.83864,230.08
    2742 
    2743 > view matrix models
    2744 > #6,0.38346,-0.89225,-0.23845,171.65,-0.7058,-0.11659,-0.69875,188.19,0.59566,0.43624,-0.67446,232.97
    2745 
    2746 > view matrix models
    2747 > #6,0.39317,-0.76948,-0.50331,169.39,-0.87838,-0.15254,-0.45296,190.79,0.27177,0.62019,-0.73588,233.44
    2748 
    2749 > view matrix models
    2750 > #6,0.2487,-0.8659,-0.43401,168.98,-0.9146,-0.062445,-0.39951,192.42,0.31883,0.49631,-0.80748,231.22
    2751 
    2752 > ui mousemode right "translate selected models"
    2753 
    2754 > view matrix models
    2755 > #6,0.2487,-0.8659,-0.43401,171.05,-0.9146,-0.062445,-0.39951,204.18,0.31883,0.49631,-0.80748,239.79
    2756 
    2757 > view matrix models
    2758 > #6,0.2487,-0.8659,-0.43401,185.2,-0.9146,-0.062445,-0.39951,199.52,0.31883,0.49631,-0.80748,246.18
    2759 
    2760 > view matrix models
    2761 > #6,0.2487,-0.8659,-0.43401,184.42,-0.9146,-0.062445,-0.39951,194.83,0.31883,0.49631,-0.80748,246.36
    2762 
    2763 > fitmap #6 inMap #2
    2764 
    2765 Fit molecule R_mid_2.pdb (#6) to map
    2766 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 706 atoms 
    2767 average map value = 4.789, steps = 160 
    2768 shifted from previous position = 3.25 
    2769 rotated from previous position = 45.4 degrees 
    2770 atoms outside contour = 276, contour level = 3.0813 
    2771  
    2772 Position of R_mid_2.pdb (#6) relative to
    2773 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    2774 Matrix rotation and translation 
    2775 -0.18583593 -0.59079798 -0.78512595 179.71240486 
    2776 -0.96931860 -0.02060986 0.24494221 204.59048513 
    2777 -0.16089270 0.80655625 -0.56884142 253.34117726 
    2778 Axis 0.60974613 -0.67773201 -0.41096103 
    2779 Axis point 146.14279044 0.00000000 111.60540170 
    2780 Rotation angle (degrees) 152.57862036 
    2781 Shift along axis -133.19192918 
    2782  
    2783 
    2784 > show #!3 models
    2785 
    2786 > select #6/B:423
    2787 
    2788 20 atoms, 21 bonds, 1 residue, 1 model selected 
    2789 
    2790 > view matrix models
    2791 > #6,-0.18584,-0.5908,-0.78513,180.29,-0.96932,-0.02061,0.24494,204.22,-0.16089,0.80656,-0.56884,249.19
    2792 
    2793 > view matrix models
    2794 > #6,-0.18584,-0.5908,-0.78513,181.98,-0.96932,-0.02061,0.24494,206.79,-0.16089,0.80656,-0.56884,248.94
    2795 
    2796 > view matrix models
    2797 > #6,-0.18584,-0.5908,-0.78513,182.38,-0.96932,-0.02061,0.24494,205.43,-0.16089,0.80656,-0.56884,248.54
    2798 
    2799 > fitmap #6 inMap #2
    2800 
    2801 Fit molecule R_mid_2.pdb (#6) to map
    2802 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 706 atoms 
    2803 average map value = 5.655, steps = 116 
    2804 shifted from previous position = 4 
    2805 rotated from previous position = 28.8 degrees 
    2806 atoms outside contour = 232, contour level = 3.0813 
    2807  
    2808 Position of R_mid_2.pdb (#6) relative to
    2809 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    2810 Matrix rotation and translation 
    2811 -0.57000016 -0.34097102 -0.74755507 184.43354957 
    2812 -0.79142302 -0.01664767 0.61104211 212.46599963 
    2813 -0.22079270 0.93992639 -0.26036314 257.45055643 
    2814 Axis 0.42869781 -0.68663018 -0.58716028 
    2815 Axis point 139.74382600 0.00000000 78.23504452 
    2816 Rotation angle (degrees) 157.44406321 
    2817 Shift along axis -217.98404753 
    2818  
    2819 
    2820 > hide #!2 models
    2821 
    2822 > select clear
    2823 
    2824 Drag select of 567 residues, 4 pseudobonds, 99 shapes, 8231 atoms, 9076 bonds 
    2825 
    2826 > combine #3 #6
    2827 
    2828 Remapping chain ID 'B' in R_mid_2.pdb #6 to 'D' 
    2829 
    2830 > hide #!6 models
    2831 
    2832 > hide #!3 models
    2833 
    2834 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-6.pdb models #4
    2835 > relModel #4
    2836 
    2837 > select #4/C:466
    2838 
    2839 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2840 
    2841 > ui mousemode right "translate selected atoms"
    2842 
    2843 > select #4/C:465
    2844 
    2845 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2846 
    2847 > select #4/C:466
    2848 
    2849 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2850 
    2851 > select #4/C:461
    2852 
    2853 20 atoms, 21 bonds, 1 residue, 1 model selected 
    2854 
    2855 > select #4/C:462
    2856 
    2857 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2858 
    2859 > select #4/C:463
    2860 
    2861 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2862 
    2863 > select #4/C:464
    2864 
    2865 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2866 
    2867 > select #4/C:465
    2868 
    2869 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2870 
    2871 > select #4/C:466
    2872 
    2873 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2874 
    2875 > select #4/C:459
    2876 
    2877 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2878 
    2879 > select #4/C:460
    2880 
    2881 20 atoms, 21 bonds, 1 residue, 1 model selected 
    2882 
    2883 > select #4/C:461
    2884 
    2885 20 atoms, 21 bonds, 1 residue, 1 model selected 
    2886 
    2887 > select #4/C:462
    2888 
    2889 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2890 
    2891 > select #4/C:463
    2892 
    2893 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2894 
    2895 > select #4/C:465
    2896 
    2897 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2898 
    2899 > select #4/C:466
    2900 
    2901 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2902 
    2903 > select #4/C:467
    2904 
    2905 20 atoms, 21 bonds, 1 residue, 1 model selected 
    2906 
    2907 > select #4/C:466
    2908 
    2909 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2910 
    2911 > select #4/C:465
    2912 
    2913 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2914 
    2915 > select #4/C:464
    2916 
    2917 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2918 
    2919 > select #4/C:463
    2920 
    2921 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2922 
    2923 > select #4/C:465
    2924 
    2925 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2926 
    2927 > select #4/C:466
    2928 
    2929 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2930 
    2931 > select #4/C:464
    2932 
    2933 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2934 
    2935 > select #4/C:463
    2936 
    2937 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2938 
    2939 > select #4/C:465
    2940 
    2941 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2942 
    2943 > select #4/C:466
    2944 
    2945 23 atoms, 25 bonds, 1 residue, 1 model selected 
    2946 
    2947 > select clear
    2948 
    2949 > select #4/D:418
    2950 
    2951 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2952 
    2953 > select add #4/D:417
    2954 
    2955 44 atoms, 48 bonds, 2 residues, 1 model selected 
    2956 
    2957 > select add #4/D:416
    2958 
    2959 67 atoms, 73 bonds, 3 residues, 1 model selected 
    2960 
    2961 > select add #4/D:415
    2962 
    2963 87 atoms, 94 bonds, 4 residues, 1 model selected 
    2964 
    2965 > select subtract #4/D:418
    2966 
    2967 65 atoms, 70 bonds, 3 residues, 1 model selected 
    2968 
    2969 > select add #4/D:418
    2970 
    2971 87 atoms, 94 bonds, 4 residues, 1 model selected 
    2972 
    2973 > select subtract #4/D:417
    2974 
    2975 65 atoms, 70 bonds, 3 residues, 1 model selected 
    2976 
    2977 > select subtract #4/D:418
    2978 
    2979 43 atoms, 46 bonds, 2 residues, 1 model selected 
    2980 
    2981 > select add #4/D:417
    2982 
    2983 65 atoms, 70 bonds, 3 residues, 1 model selected 
    2984 
    2985 > select subtract #4/D:417
    2986 
    2987 43 atoms, 45 bonds, 2 residues, 1 model selected 
    2988 
    2989 > select subtract #4/D:415
    2990 
    2991 23 atoms, 24 bonds, 1 residue, 1 model selected 
    2992 
    2993 > select add #4/D:415
    2994 
    2995 43 atoms, 45 bonds, 2 residues, 1 model selected 
    2996 
    2997 > select subtract #4/D:416
    2998 
    2999 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3000 
    3001 > select add #4/D:418
    3002 
    3003 42 atoms, 45 bonds, 2 residues, 1 model selected 
    3004 
    3005 > select add #4/D:417
    3006 
    3007 64 atoms, 69 bonds, 3 residues, 1 model selected 
    3008 
    3009 > select add #4/D:416
    3010 
    3011 87 atoms, 94 bonds, 4 residues, 1 model selected 
    3012 
    3013 > select subtract #4/D:415
    3014 
    3015 67 atoms, 73 bonds, 3 residues, 1 model selected 
    3016 
    3017 > select subtract #4/D:416
    3018 
    3019 44 atoms, 48 bonds, 2 residues, 1 model selected 
    3020 
    3021 > select subtract #4/D:417
    3022 
    3023 22 atoms, 24 bonds, 1 residue, 1 model selected 
    3024 
    3025 > select subtract #4/D:418
    3026 
    3027 Nothing selected 
    3028 
    3029 > select add #4/D:417
    3030 
    3031 22 atoms, 24 bonds, 1 residue, 1 model selected 
    3032 
    3033 > select add #4/D:416
    3034 
    3035 45 atoms, 49 bonds, 2 residues, 1 model selected 
    3036 
    3037 > select add #4/D:415
    3038 
    3039 65 atoms, 70 bonds, 3 residues, 1 model selected 
    3040 
    3041 > select clear
    3042 
    3043 > select add #4/D:415
    3044 
    3045 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3046 
    3047 > select add #4/D:416
    3048 
    3049 43 atoms, 46 bonds, 2 residues, 1 model selected 
    3050 
    3051 > select subtract #4/D:415
    3052 
    3053 23 atoms, 25 bonds, 1 residue, 1 model selected 
    3054 
    3055 > select add #4/D:415
    3056 
    3057 43 atoms, 46 bonds, 2 residues, 1 model selected 
    3058 
    3059 > select subtract #4/D:416
    3060 
    3061 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3062 
    3063 > select add #4/D:418
    3064 
    3065 42 atoms, 45 bonds, 2 residues, 1 model selected 
    3066 
    3067 > select add #4/D:417
    3068 
    3069 64 atoms, 69 bonds, 3 residues, 1 model selected 
    3070 
    3071 > select clear
    3072 
    3073 > select #4/D:417
    3074 
    3075 22 atoms, 24 bonds, 1 residue, 1 model selected 
    3076 
    3077 > select #4/D:416
    3078 
    3079 23 atoms, 25 bonds, 1 residue, 1 model selected 
    3080 
    3081 > select #4/D:415
    3082 
    3083 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3084 
    3085 > select clear
    3086 
    3087 > select add #4/D:417
    3088 
    3089 22 atoms, 24 bonds, 1 residue, 1 model selected 
    3090 
    3091 > select add #4/D:418
    3092 
    3093 44 atoms, 48 bonds, 2 residues, 1 model selected 
    3094 
    3095 > select add #4/D:415
    3096 
    3097 64 atoms, 69 bonds, 3 residues, 1 model selected 
    3098 
    3099 > select add #4/D:416
    3100 
    3101 87 atoms, 94 bonds, 4 residues, 1 model selected 
    3102 
    3103 > select subtract #4/D:418
    3104 
    3105 65 atoms, 70 bonds, 3 residues, 1 model selected 
    3106 
    3107 > select subtract #4/D:417
    3108 
    3109 43 atoms, 46 bonds, 2 residues, 1 model selected 
    3110 
    3111 > select subtract #4/D:416
    3112 
    3113 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3114 
    3115 > select clear
    3116 
    3117 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-6_1.pdb models
    3118 > #4 relModel #4
    3119 
    3120 > select #4/C:333
    3121 
    3122 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3123 
    3124 > select #4/C:330
    3125 
    3126 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3127 
    3128 > select #4/C:329
    3129 
    3130 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3131 
    3132 > select #4/C:330
    3133 
    3134 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3135 
    3136 > select clear
    3137 
    3138 > show #!1 models
    3139 
    3140 > hide #!1 models
    3141 
    3142 > show #!2 models
    3143 
    3144 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-6_1.pdb models
    3145 > #4 relModel #2
    3146 
    3147 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/RealSpaceRefine_5/R-combine-
    3148 > new-6_1_real_space_refined_005.pdb
    3149 
    3150 Chain information for R-combine-new-6_1_real_space_refined_005.pdb #15 
    3151 --- 
    3152 Chain | Description 
    3153 A | No description available 
    3154 B | No description available 
    3155 C | No description available 
    3156 D | No description available 
    3157 E | No description available 
    3158 H | No description available 
    3159  
    3160 
    3161 > select #15/H:577@C2'
    3162 
    3163 1 atom, 1 residue, 1 model selected 
    3164 
    3165 > select up
    3166 
    3167 22 atoms, 24 bonds, 1 residue, 1 model selected 
    3168 
    3169 > select up
    3170 
    3171 6069 atoms, 6800 bonds, 283 residues, 1 model selected 
    3172 
    3173 > select up
    3174 
    3175 12142 atoms, 13596 bonds, 567 residues, 1 model selected 
    3176 
    3177 > style sel stick
    3178 
    3179 Changed 12142 atom styles 
    3180 
    3181 > cartoon sel
    3182 
    3183 > hide #!4 models
    3184 
    3185 > show #!3 models
    3186 
    3187 > hide #!3 models
    3188 
    3189 > close #15
    3190 
    3191 > show #10 models
    3192 
    3193 > show #11 models
    3194 
    3195 > hide #10 models
    3196 
    3197 > hide #11 models
    3198 
    3199 > show #16 models
    3200 
    3201 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_e_m/fold_r_e_m_model_0.cif
    3202 
    3203 Chain information for fold_r_e_m_model_0.cif #15 
    3204 --- 
    3205 Chain | Description 
    3206 B | . 
    3207  
    3208 
    3209 > hide #!2 models
    3210 
    3211 > hide #16 models
    3212 
    3213 > show #16 models
    3214 
    3215 > hide #15 models
    3216 
    3217 > select #16/B:358
    3218 
    3219 22 atoms, 24 bonds, 1 residue, 1 model selected 
    3220 
    3221 > select add #16/B:359
    3222 
    3223 44 atoms, 48 bonds, 2 residues, 1 model selected 
    3224 
    3225 > select add #16/B:360
    3226 
    3227 67 atoms, 73 bonds, 3 residues, 1 model selected 
    3228 
    3229 > select add #16/B:361
    3230 
    3231 87 atoms, 94 bonds, 4 residues, 1 model selected 
    3232 
    3233 > select add #16/B:362
    3234 
    3235 107 atoms, 115 bonds, 5 residues, 1 model selected 
    3236 
    3237 > select add #16/B:363
    3238 
    3239 129 atoms, 139 bonds, 6 residues, 1 model selected 
    3240 
    3241 > select add #16/B:364
    3242 
    3243 152 atoms, 164 bonds, 7 residues, 1 model selected 
    3244 
    3245 > select add #16/B:365
    3246 
    3247 172 atoms, 185 bonds, 8 residues, 1 model selected 
    3248 
    3249 > select add #16/B:366
    3250 
    3251 192 atoms, 206 bonds, 9 residues, 1 model selected 
    3252 
    3253 > select add #16/B:367
    3254 
    3255 212 atoms, 227 bonds, 10 residues, 1 model selected 
    3256 
    3257 > select add #16/B:368
    3258 
    3259 234 atoms, 251 bonds, 11 residues, 1 model selected 
    3260 
    3261 > select add #16/B:417
    3262 
    3263 256 atoms, 275 bonds, 12 residues, 1 model selected 
    3264 
    3265 > select add #16/B:416
    3266 
    3267 279 atoms, 300 bonds, 13 residues, 1 model selected 
    3268 
    3269 > select add #16/B:415
    3270 
    3271 299 atoms, 321 bonds, 14 residues, 1 model selected 
    3272 
    3273 > select add #16/B:414
    3274 
    3275 319 atoms, 342 bonds, 15 residues, 1 model selected 
    3276 
    3277 > select add #16/B:413
    3278 
    3279 342 atoms, 367 bonds, 16 residues, 1 model selected 
    3280 
    3281 > select add #16/B:412
    3282 
    3283 362 atoms, 388 bonds, 17 residues, 1 model selected 
    3284 
    3285 > select add #16/B:411
    3286 
    3287 384 atoms, 412 bonds, 18 residues, 1 model selected 
    3288 
    3289 > select add #16/B:410
    3290 
    3291 406 atoms, 436 bonds, 19 residues, 1 model selected 
    3292 
    3293 > select add #16/B:409
    3294 
    3295 426 atoms, 457 bonds, 20 residues, 1 model selected 
    3296 
    3297 > select add #16/B:408
    3298 
    3299 446 atoms, 478 bonds, 21 residues, 1 model selected 
    3300 
    3301 > select add #16/B:407
    3302 
    3303 466 atoms, 499 bonds, 22 residues, 1 model selected 
    3304 
    3305 > select add #16/B:406
    3306 
    3307 488 atoms, 523 bonds, 23 residues, 1 model selected 
    3308 
    3309 > select add #16/B:405
    3310 
    3311 508 atoms, 544 bonds, 24 residues, 1 model selected 
    3312 
    3313 > select add #16/B:404
    3314 
    3315 528 atoms, 565 bonds, 25 residues, 1 model selected 
    3316 
    3317 > select add #16/B:403
    3318 
    3319 572 atoms, 589 bonds, 27 residues, 1 model selected 
    3320 
    3321 > select add #16/B:402
    3322 
    3323 592 atoms, 610 bonds, 28 residues, 1 model selected 
    3324 
    3325 > select add #16/B:376
    3326 
    3327 612 atoms, 631 bonds, 29 residues, 1 model selected 
    3328 
    3329 > select add #16/B:375
    3330 
    3331 634 atoms, 655 bonds, 30 residues, 1 model selected 
    3332 
    3333 > select add #16/B:373
    3334 
    3335 656 atoms, 679 bonds, 31 residues, 1 model selected 
    3336 
    3337 > select add #16/B:374
    3338 
    3339 676 atoms, 700 bonds, 32 residues, 1 model selected 
    3340 
    3341 > select add #16/B:372
    3342 
    3343 698 atoms, 724 bonds, 33 residues, 1 model selected 
    3344 
    3345 > select add #16/B:370
    3346 
    3347 720 atoms, 748 bonds, 34 residues, 1 model selected 
    3348 
    3349 > select add #16/B:371
    3350 
    3351 742 atoms, 772 bonds, 35 residues, 1 model selected 
    3352 
    3353 > select add #16/B:369
    3354 
    3355 762 atoms, 793 bonds, 36 residues, 1 model selected 
    3356 
    3357 > select add #16/B:401
    3358 
    3359 784 atoms, 817 bonds, 37 residues, 1 model selected 
    3360 
    3361 > select add #16/B:400
    3362 
    3363 806 atoms, 841 bonds, 38 residues, 1 model selected 
    3364 
    3365 > select add #16/B:399
    3366 
    3367 826 atoms, 862 bonds, 39 residues, 1 model selected 
    3368 
    3369 > select add #16/B:398
    3370 
    3371 848 atoms, 886 bonds, 40 residues, 1 model selected 
    3372 
    3373 > select add #16/B:397
    3374 
    3375 870 atoms, 910 bonds, 41 residues, 1 model selected 
    3376 
    3377 > select add #16/B:396
    3378 
    3379 890 atoms, 931 bonds, 42 residues, 1 model selected 
    3380 
    3381 > select add #16/B:395
    3382 
    3383 912 atoms, 955 bonds, 43 residues, 1 model selected 
    3384 
    3385 > select add #16/B:394
    3386 
    3387 932 atoms, 976 bonds, 44 residues, 1 model selected 
    3388 
    3389 > select add #16/B:378
    3390 
    3391 952 atoms, 997 bonds, 45 residues, 1 model selected 
    3392 
    3393 > select add #16/B:379
    3394 
    3395 975 atoms, 1022 bonds, 46 residues, 1 model selected 
    3396 
    3397 > select add #16/B:380
    3398 
    3399 997 atoms, 1046 bonds, 47 residues, 1 model selected 
    3400 
    3401 > select add #16/B:381
    3402 
    3403 1017 atoms, 1067 bonds, 48 residues, 1 model selected 
    3404 
    3405 > select add #16/B:382
    3406 
    3407 1039 atoms, 1091 bonds, 49 residues, 1 model selected 
    3408 
    3409 > select add #16/B:383
    3410 
    3411 1059 atoms, 1112 bonds, 50 residues, 1 model selected 
    3412 
    3413 > select add #16/B:384
    3414 
    3415 1081 atoms, 1136 bonds, 51 residues, 1 model selected 
    3416 
    3417 > select add #16/B:385
    3418 
    3419 1103 atoms, 1160 bonds, 52 residues, 1 model selected 
    3420 
    3421 > select add #16/B:386
    3422 
    3423 1126 atoms, 1185 bonds, 53 residues, 1 model selected 
    3424 
    3425 > select add #16/B:387
    3426 
    3427 1148 atoms, 1209 bonds, 54 residues, 1 model selected 
    3428 
    3429 > select add #16/B:388
    3430 
    3431 1170 atoms, 1233 bonds, 55 residues, 1 model selected 
    3432 
    3433 > select add #16/B:389
    3434 
    3435 1192 atoms, 1257 bonds, 56 residues, 1 model selected 
    3436 
    3437 > select add #16/B:390
    3438 
    3439 1214 atoms, 1281 bonds, 57 residues, 1 model selected 
    3440 
    3441 > select add #16/B:391
    3442 
    3443 1236 atoms, 1305 bonds, 58 residues, 1 model selected 
    3444 
    3445 > select add #16/B:392
    3446 
    3447 1256 atoms, 1326 bonds, 59 residues, 1 model selected 
    3448 
    3449 > select add #16/B:393
    3450 
    3451 1276 atoms, 1347 bonds, 60 residues, 1 model selected 
    3452 
    3453 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-6_1-coot-0.pdb
    3454 
    3455 Chain information for R-combine-new-6_1-coot-0.pdb #20 
    3456 --- 
    3457 Chain | Description 
    3458 A | No description available 
    3459 B | No description available 
    3460 C | No description available 
    3461 E | No description available 
    3462 H | No description available 
    3463  
    3464 
    3465 > select add #16/B:43
    3466 
    3467 1298 atoms, 1371 bonds, 61 residues, 1 model selected 
    3468 
    3469 > select add #16/B:44
    3470 
    3471 1320 atoms, 1395 bonds, 62 residues, 1 model selected 
    3472 
    3473 > select add #16/B:45
    3474 
    3475 1340 atoms, 1416 bonds, 63 residues, 1 model selected 
    3476 
    3477 > select add #16/B:46
    3478 
    3479 1362 atoms, 1440 bonds, 64 residues, 1 model selected 
    3480 
    3481 > select add #16/B:47
    3482 
    3483 1385 atoms, 1465 bonds, 65 residues, 1 model selected 
    3484 
    3485 > select add #16/B:418
    3486 
    3487 1407 atoms, 1489 bonds, 66 residues, 1 model selected 
    3488 
    3489 > select add #16/B:419
    3490 
    3491 1427 atoms, 1510 bonds, 67 residues, 1 model selected 
    3492 
    3493 > select add #16/B:420
    3494 
    3495 1450 atoms, 1535 bonds, 68 residues, 1 model selected 
    3496 
    3497 > select add #16/B:421
    3498 
    3499 1470 atoms, 1556 bonds, 69 residues, 1 model selected 
    3500 
    3501 > select add #16/B:422
    3502 
    3503 1490 atoms, 1577 bonds, 70 residues, 1 model selected 
    3504 
    3505 > select add #16/B:423
    3506 
    3507 1510 atoms, 1598 bonds, 71 residues, 1 model selected 
    3508 
    3509 > select add #16/B:357
    3510 
    3511 1530 atoms, 1619 bonds, 72 residues, 1 model selected 
    3512 
    3513 > select add #16/B:42
    3514 
    3515 1553 atoms, 1644 bonds, 73 residues, 1 model selected 
    3516 
    3517 > select add #16/B:41
    3518 
    3519 1573 atoms, 1665 bonds, 74 residues, 1 model selected 
    3520 
    3521 > select add #16/B:526
    3522 
    3523 1596 atoms, 1690 bonds, 75 residues, 1 model selected 
    3524 
    3525 > select subtract #16/B:526
    3526 
    3527 1573 atoms, 1665 bonds, 74 residues, 1 model selected 
    3528 
    3529 > select add #16/B:40
    3530 
    3531 1593 atoms, 1686 bonds, 75 residues, 1 model selected 
    3532 
    3533 > select add #16/B:39
    3534 
    3535 1613 atoms, 1707 bonds, 76 residues, 1 model selected 
    3536 
    3537 > select add #16/B:37
    3538 
    3539 1635 atoms, 1731 bonds, 77 residues, 1 model selected 
    3540 
    3541 > select add #16/B:38
    3542 
    3543 1658 atoms, 1756 bonds, 78 residues, 1 model selected 
    3544 
    3545 > select add #16/B:36
    3546 
    3547 1680 atoms, 1780 bonds, 79 residues, 1 model selected 
    3548 
    3549 > select add #16/B:48
    3550 
    3551 1700 atoms, 1801 bonds, 80 residues, 1 model selected 
    3552 
    3553 > select ~sel & ##selected
    3554 
    3555 10646 atoms, 11929 bonds, 498 residues, 1 model selected 
    3556 
    3557 > delete atoms sel
    3558 
    3559 > delete bonds sel
    3560 
    3561 > show #!1 models
    3562 
    3563 > show #!2 models
    3564 
    3565 > select #16/B:415
    3566 
    3567 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3568 
    3569 > ui mousemode right "translate selected models"
    3570 
    3571 > ui mousemode right "translate selected atoms"
    3572 
    3573 > ui mousemode right "translate selected models"
    3574 
    3575 > view matrix models #16,1,0,0,145.93,0,1,0,288.33,0,0,1,411.12
    3576 
    3577 > view matrix models #16,1,0,0,318.89,0,1,0,157.22,0,0,1,170.31
    3578 
    3579 > hide #!1 models
    3580 
    3581 > view matrix models #16,1,0,0,221.04,0,1,0,149.26,0,0,1,306.12
    3582 
    3583 > view matrix models #16,1,0,0,146.32,0,1,0,167.13,0,0,1,302.3
    3584 
    3585 > ui mousemode right "rotate selected models"
    3586 
    3587 > view matrix models
    3588 > #16,-0.80202,0.27094,-0.53231,211.85,-0.16662,0.75434,0.63499,167.16,0.57359,0.59797,-0.55985,296.69
    3589 
    3590 > view matrix models
    3591 > #16,-0.98486,-0.013981,-0.17279,216.23,-0.13081,0.71399,0.68782,165.66,0.11375,0.70001,-0.70501,313.18
    3592 
    3593 > view matrix models
    3594 > #16,-0.72042,0.27584,-0.63633,210.35,-0.56011,0.30965,0.76837,182.77,0.40899,0.90996,-0.068574,293.65
    3595 
    3596 > ui mousemode right "translate selected models"
    3597 
    3598 > view matrix models
    3599 > #16,-0.72042,0.27584,-0.63633,178.55,-0.56011,0.30965,0.76837,201.4,0.40899,0.90996,-0.068574,265.67
    3600 
    3601 > view matrix models
    3602 > #16,-0.72042,0.27584,-0.63633,185.77,-0.56011,0.30965,0.76837,194.79,0.40899,0.90996,-0.068574,253.45
    3603 
    3604 > select #20/C:485@P
    3605 
    3606 1 atom, 1 residue, 1 model selected 
    3607 
    3608 > select up
    3609 
    3610 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3611 
    3612 > select up
    3613 
    3614 3410 atoms, 3813 bonds, 160 residues, 1 model selected 
    3615 
    3616 > select up
    3617 
    3618 11519 atoms, 12901 bonds, 538 residues, 1 model selected 
    3619 
    3620 > style sel stick
    3621 
    3622 Changed 11519 atom styles 
    3623 
    3624 > cartoon sel
    3625 
    3626 > select clear
    3627 
    3628 > select #16/B:36
    3629 
    3630 22 atoms, 24 bonds, 1 residue, 1 model selected 
    3631 
    3632 > view matrix models
    3633 > #16,-0.72042,0.27584,-0.63633,179.91,-0.56011,0.30965,0.76837,164.71,0.40899,0.90996,-0.068574,253.79
    3634 
    3635 > select #20/E:358
    3636 
    3637 23 atoms, 25 bonds, 1 residue, 1 model selected 
    3638 
    3639 > select add #20/E:359
    3640 
    3641 43 atoms, 46 bonds, 2 residues, 1 model selected 
    3642 
    3643 > select add #20/E:360
    3644 
    3645 63 atoms, 67 bonds, 3 residues, 1 model selected 
    3646 
    3647 > select add #20/E:361
    3648 
    3649 85 atoms, 91 bonds, 4 residues, 1 model selected 
    3650 
    3651 > select add #20/E:362
    3652 
    3653 108 atoms, 116 bonds, 5 residues, 1 model selected 
    3654 
    3655 > select add #20/E:363
    3656 
    3657 128 atoms, 137 bonds, 6 residues, 1 model selected 
    3658 
    3659 > select add #20/E:364
    3660 
    3661 148 atoms, 158 bonds, 7 residues, 1 model selected 
    3662 
    3663 > select add #20/E:365
    3664 
    3665 168 atoms, 179 bonds, 8 residues, 1 model selected 
    3666 
    3667 > select add #20/E:366
    3668 
    3669 190 atoms, 204 bonds, 9 residues, 1 model selected 
    3670 
    3671 > select add #20/E:367
    3672 
    3673 210 atoms, 225 bonds, 10 residues, 1 model selected 
    3674 
    3675 > select add #20/E:368
    3676 
    3677 232 atoms, 249 bonds, 11 residues, 1 model selected 
    3678 
    3679 > select add #20/E:369
    3680 
    3681 254 atoms, 273 bonds, 12 residues, 1 model selected 
    3682 
    3683 > select #16/B:414
    3684 
    3685 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3686 
    3687 > view matrix models
    3688 > #16,-0.72042,0.27584,-0.63633,206.93,-0.56011,0.30965,0.76837,195.1,0.40899,0.90996,-0.068574,234.04
    3689 
    3690 > ui mousemode right "rotate selected models"
    3691 
    3692 > view matrix models
    3693 > #16,-0.79718,0.53246,-0.28459,203.04,0.0074598,0.48002,0.87723,173.07,0.6037,0.69718,-0.38664,233.13
    3694 
    3695 > view matrix models
    3696 > #16,-0.81382,0.5389,-0.21745,202.74,0.024547,0.40574,0.91366,172.7,0.5806,0.73822,-0.34343,233.03
    3697 
    3698 > ui mousemode right "translate selected models"
    3699 
    3700 > view matrix models
    3701 > #16,-0.81382,0.5389,-0.21745,202.66,0.024547,0.40574,0.91366,180.32,0.5806,0.73822,-0.34343,234.73
    3702 
    3703 > ui mousemode right "rotate selected models"
    3704 
    3705 > view matrix models
    3706 > #16,-0.88022,0.38759,-0.27385,206.88,-0.069757,0.46512,0.8825,183.38,0.46942,0.79589,-0.38237,238.5
    3707 
    3708 > view matrix models
    3709 > #16,-0.82168,0.45251,-0.34654,205.09,-0.26648,0.23246,0.93539,191.43,0.50382,0.86093,-0.07042,233
    3710 
    3711 > ui mousemode right "translate selected models"
    3712 
    3713 > view matrix models
    3714 > #16,-0.82168,0.45251,-0.34654,206.49,-0.26648,0.23246,0.93539,191.41,0.50382,0.86093,-0.07042,231.86
    3715 
    3716 > hide #!2 models
    3717 
    3718 > hide #!20 models
    3719 
    3720 > show #!20 models
    3721 
    3722 > view matrix models
    3723 > #16,-0.82168,0.45251,-0.34654,191.23,-0.26648,0.23246,0.93539,182.42,0.50382,0.86093,-0.07042,263.73
    3724 
    3725 > ui mousemode right "rotate selected models"
    3726 
    3727 > view matrix models
    3728 > #16,-0.71954,0.64403,-0.25978,185.05,-0.29819,0.051298,0.95313,184.85,0.62717,0.76328,0.15513,257.68
    3729 
    3730 > view matrix models
    3731 > #16,-0.64375,0.48676,-0.59046,187.82,-0.76507,-0.39372,0.50956,209.7,0.015554,0.77978,0.62586,272.47
    3732 
    3733 > view matrix models
    3734 > #16,-0.57243,0.46953,-0.67221,186.52,-0.79572,-0.51595,0.31722,214.08,-0.19788,0.71647,0.66896,279.74
    3735 
    3736 > view matrix models
    3737 > #16,-0.21945,0.53178,-0.81796,175.78,-0.48636,-0.78642,-0.38078,214.3,-0.84575,0.31426,0.43122,307.99
    3738 
    3739 > view matrix models
    3740 > #16,-0.063723,0.61343,-0.78717,169.45,-0.1805,-0.78285,-0.59545,206.49,-0.98151,0.10414,0.16061,317.61
    3741 
    3742 > view matrix models
    3743 > #16,-0.15428,0.56142,-0.81302,173.26,-0.37252,-0.7952,-0.47842,211.7,-0.91511,0.22905,0.33182,312.27
    3744 
    3745 > view matrix models
    3746 > #16,-0.49855,0.46673,-0.73049,184.73,-0.78044,-0.60846,0.14388,216.43,-0.37732,0.64183,0.6676,286.52
    3747 
    3748 > view matrix models
    3749 > #16,-0.29205,0.50526,-0.81205,178.38,-0.59285,-0.7619,-0.26084,216.26,-0.75049,0.40525,0.52205,302.94
    3750 
    3751 > view matrix models
    3752 > #16,-0.25119,0.51937,-0.8168,176.94,-0.53545,-0.77754,-0.32974,215.28,-0.80635,0.35453,0.47341,305.84
    3753 
    3754 > ui mousemode right "translate selected models"
    3755 
    3756 > view matrix models
    3757 > #16,-0.25119,0.51937,-0.8168,184.35,-0.53545,-0.77754,-0.32974,210.7,-0.80635,0.35453,0.47341,282.43
    3758 
    3759 > ui mousemode right "rotate selected models"
    3760 
    3761 > view matrix models
    3762 > #16,-0.12285,0.18387,-0.97524,184.73,-0.49826,-0.86129,-0.099622,207.36,-0.85828,0.47368,0.19743,286.53
    3763 
    3764 > view matrix models
    3765 > #16,0.1038,-0.59594,-0.79629,181.63,-0.50066,-0.72309,0.47589,199.22,-0.8594,0.34927,-0.37343,294.63
    3766 
    3767 > view matrix models
    3768 > #16,-0.73101,-0.18468,-0.65689,204.76,-0.29431,-0.7832,0.54771,191.89,-0.61563,0.59372,0.51817,273.55
    3769 
    3770 > select clear
    3771 
    3772 > ui mousemode right "translate selected models"
    3773 
    3774 > select #16/B:366
    3775 
    3776 20 atoms, 21 bonds, 1 residue, 1 model selected 
    3777 
    3778 > view matrix models
    3779 > #16,-0.73101,-0.18468,-0.65689,209.52,-0.29431,-0.7832,0.54771,194.23,-0.61563,0.59372,0.51817,270.19
    3780 
    3781 > ui mousemode right "rotate selected models"
    3782 
    3783 > view matrix models
    3784 > #16,-0.49537,-0.088551,-0.86416,203.16,-0.23268,-0.94492,0.23021,197.38,-0.83694,0.31511,0.44748,281.01
    3785 
    3786 > view matrix models
    3787 > #16,-0.52709,-0.10637,-0.84312,204.13,-0.24693,-0.93016,0.27172,197.23,-0.81314,0.35141,0.46402,279.69
    3788 
    3789 > view matrix models
    3790 > #16,-0.22706,0.12978,-0.96519,193.38,-0.6193,-0.78412,0.040258,211.49,-0.7516,0.60689,0.25842,277.85
    3791 
    3792 > view matrix models
    3793 > #16,-0.35294,0.11995,-0.92793,197.29,-0.67089,-0.72373,0.16162,211.25,-0.65219,0.67958,0.3359,272.9
    3794 
    3795 > view matrix models
    3796 > #16,0.059853,0.19546,-0.97888,183.25,-0.42658,-0.88158,-0.20211,208.74,-0.90247,0.42967,0.030615,287.26
    3797 
    3798 > ui mousemode right "translate selected models"
    3799 
    3800 > view matrix models
    3801 > #16,0.059853,0.19546,-0.97888,200.7,-0.42658,-0.88158,-0.20211,209.03,-0.90247,0.42967,0.030615,266.57
    3802 
    3803 > ui mousemode right "rotate selected models"
    3804 
    3805 > view matrix models
    3806 > #16,0.23054,-0.13974,-0.96298,197.6,-0.47739,-0.87859,0.013207,208.08,-0.84791,0.45667,-0.26927,268.17
    3807 
    3808 > view matrix models
    3809 > #16,0.3491,-0.065072,-0.93482,192.61,-0.72618,-0.64931,-0.22598,217.41,-0.59228,0.75774,-0.27392,257.02
    3810 
    3811 > view matrix models
    3812 > #16,0.60451,-0.039885,-0.7956,182.13,-0.55119,-0.742,-0.3816,214.22,-0.57512,0.66921,-0.47053,259.59
    3813 
    3814 > ui mousemode right "translate selected models"
    3815 
    3816 > view matrix models
    3817 > #16,0.60451,-0.039885,-0.7956,192,-0.55119,-0.742,-0.3816,215.69,-0.57512,0.66921,-0.47053,255.91
    3818 
    3819 > view matrix models
    3820 > #16,0.60451,-0.039885,-0.7956,200.34,-0.55119,-0.742,-0.3816,212.33,-0.57512,0.66921,-0.47053,258.77
    3821 
    3822 > ui mousemode right "rotate selected models"
    3823 
    3824 > view matrix models
    3825 > #16,0.62452,-0.29296,-0.72398,200.97,-0.62625,-0.74174,-0.24007,213.15,-0.46668,0.60332,-0.6467,257.8
    3826 
    3827 > ui mousemode right "translate selected models"
    3828 
    3829 > view matrix models
    3830 > #16,0.62452,-0.29296,-0.72398,195.72,-0.62625,-0.74174,-0.24007,211.64,-0.46668,0.60332,-0.6467,260.42
    3831 
    3832 > ui mousemode right "rotate selected models"
    3833 
    3834 > view matrix models
    3835 > #16,0.65269,-0.095449,-0.75159,193.42,-0.52007,-0.77783,-0.35285,209.73,-0.55093,0.62119,-0.55732,262.03
    3836 
    3837 > view matrix models
    3838 > #16,0.65817,0.010853,-0.75279,192.34,-0.43781,-0.80792,-0.39443,207.72,-0.61248,0.58919,-0.527,264.01
    3839 
    3840 > view matrix models
    3841 > #16,0.76096,-0.14884,-0.6315,188.71,-0.32675,-0.9288,-0.17482,202.34,-0.56052,0.33937,-0.75541,267.1
    3842 
    3843 > view matrix models
    3844 > #16,0.75214,-0.037724,-0.65792,188.39,-0.31923,-0.89426,-0.31367,203.48,-0.57653,0.44595,-0.68465,265.88
    3845 
    3846 > ui mousemode right "translate selected models"
    3847 
    3848 > view matrix models
    3849 > #16,0.75214,-0.037724,-0.65792,193.71,-0.31923,-0.89426,-0.31367,203.7,-0.57653,0.44595,-0.68465,265.93
    3850 
    3851 > view matrix models
    3852 > #16,0.75214,-0.037724,-0.65792,196.4,-0.31923,-0.89426,-0.31367,206.19,-0.57653,0.44595,-0.68465,266.73
    3853 
    3854 > view matrix models
    3855 > #16,0.75214,-0.037724,-0.65792,197.82,-0.31923,-0.89426,-0.31367,208.24,-0.57653,0.44595,-0.68465,264.83
    3856 
    3857 > view matrix models
    3858 > #16,0.75214,-0.037724,-0.65792,197.67,-0.31923,-0.89426,-0.31367,208.66,-0.57653,0.44595,-0.68465,264.63
    3859 
    3860 > view matrix models
    3861 > #16,0.75214,-0.037724,-0.65792,195.17,-0.31923,-0.89426,-0.31367,208.71,-0.57653,0.44595,-0.68465,265.15
    3862 
    3863 > view matrix models
    3864 > #16,0.75214,-0.037724,-0.65792,194.2,-0.31923,-0.89426,-0.31367,208.59,-0.57653,0.44595,-0.68465,265.25
    3865 
    3866 > view matrix models
    3867 > #16,0.75214,-0.037724,-0.65792,194.64,-0.31923,-0.89426,-0.31367,209.44,-0.57653,0.44595,-0.68465,264.76
    3868 
    3869 > show #!2 models
    3870 
    3871 > hide #!16 models
    3872 
    3873 > show #17 models
    3874 
    3875 > hide #!2 models
    3876 
    3877 > hide #!20 models
    3878 
    3879 > view matrix models
    3880 > #16,0.75214,-0.037724,-0.65792,194.89,-0.31923,-0.89426,-0.31367,209.35,-0.57653,0.44595,-0.68465,264.46
    3881 
    3882 > view matrix models
    3883 > #16,0.75214,-0.037724,-0.65792,156.47,-0.31923,-0.89426,-0.31367,236.83,-0.57653,0.44595,-0.68465,321.16
    3884 
    3885 > show #18 models
    3886 
    3887 > hide #17 models
    3888 
    3889 > select #18/B:424
    3890 
    3891 22 atoms, 24 bonds, 1 residue, 1 model selected 
    3892 
    3893 > select add #18/B:423
    3894 
    3895 42 atoms, 45 bonds, 2 residues, 1 model selected 
    3896 
    3897 > select add #18/B:422
    3898 
    3899 62 atoms, 66 bonds, 3 residues, 1 model selected 
    3900 
    3901 > select add #18/B:421
    3902 
    3903 82 atoms, 87 bonds, 4 residues, 1 model selected 
    3904 
    3905 > select add #18/B:420
    3906 
    3907 105 atoms, 112 bonds, 5 residues, 1 model selected 
    3908 
    3909 > select add #18/B:419
    3910 
    3911 125 atoms, 133 bonds, 6 residues, 1 model selected 
    3912 
    3913 > select add #18/B:418
    3914 
    3915 147 atoms, 157 bonds, 7 residues, 1 model selected 
    3916 
    3917 > select add #18/B:45
    3918 
    3919 167 atoms, 178 bonds, 8 residues, 1 model selected 
    3920 
    3921 > select add #18/B:46
    3922 
    3923 189 atoms, 202 bonds, 9 residues, 1 model selected 
    3924 
    3925 > select add #18/B:48
    3926 
    3927 209 atoms, 223 bonds, 10 residues, 1 model selected 
    3928 
    3929 > select add #18/B:47
    3930 
    3931 232 atoms, 248 bonds, 11 residues, 1 model selected 
    3932 
    3933 > select add #18/B:44
    3934 
    3935 254 atoms, 272 bonds, 12 residues, 1 model selected 
    3936 
    3937 > select add #18/B:43
    3938 
    3939 276 atoms, 296 bonds, 13 residues, 1 model selected 
    3940 
    3941 > select add #18/B:42
    3942 
    3943 299 atoms, 321 bonds, 14 residues, 1 model selected 
    3944 
    3945 > select add #18/B:41
    3946 
    3947 319 atoms, 342 bonds, 15 residues, 1 model selected 
    3948 
    3949 > select add #18/B:40
    3950 
    3951 339 atoms, 363 bonds, 16 residues, 1 model selected 
    3952 
    3953 > select add #18/B:39
    3954 
    3955 359 atoms, 384 bonds, 17 residues, 1 model selected 
    3956 
    3957 > select add #18/B:38
    3958 
    3959 382 atoms, 409 bonds, 18 residues, 1 model selected 
    3960 
    3961 > select add #18/B:37
    3962 
    3963 404 atoms, 433 bonds, 19 residues, 1 model selected 
    3964 
    3965 > select add #18/B:36
    3966 
    3967 426 atoms, 457 bonds, 20 residues, 1 model selected 
    3968 
    3969 > select add #18/B:356
    3970 
    3971 446 atoms, 478 bonds, 21 residues, 1 model selected 
    3972 
    3973 > select add #18/B:357
    3974 
    3975 466 atoms, 499 bonds, 22 residues, 1 model selected 
    3976 
    3977 > select add #18/B:358
    3978 
    3979 488 atoms, 523 bonds, 23 residues, 1 model selected 
    3980 
    3981 > select add #18/B:359
    3982 
    3983 510 atoms, 547 bonds, 24 residues, 1 model selected 
    3984 
    3985 > select add #18/B:360
    3986 
    3987 533 atoms, 572 bonds, 25 residues, 1 model selected 
    3988 
    3989 > select add #18/B:417
    3990 
    3991 555 atoms, 596 bonds, 26 residues, 1 model selected 
    3992 
    3993 > select add #18/B:416
    3994 
    3995 578 atoms, 621 bonds, 27 residues, 1 model selected 
    3996 
    3997 > select add #18/B:414
    3998 
    3999 598 atoms, 642 bonds, 28 residues, 1 model selected 
    4000 
    4001 > select add #18/B:415
    4002 
    4003 618 atoms, 663 bonds, 29 residues, 1 model selected 
    4004 
    4005 > select add #18/B:413
    4006 
    4007 641 atoms, 688 bonds, 30 residues, 1 model selected 
    4008 
    4009 > select add #18/B:412
    4010 
    4011 661 atoms, 709 bonds, 31 residues, 1 model selected 
    4012 
    4013 > select add #18/B:361
    4014 
    4015 681 atoms, 730 bonds, 32 residues, 1 model selected 
    4016 
    4017 > select add #18/B:362
    4018 
    4019 701 atoms, 751 bonds, 33 residues, 1 model selected 
    4020 
    4021 > select add #18/B:363
    4022 
    4023 723 atoms, 775 bonds, 34 residues, 1 model selected 
    4024 
    4025 > select add #18/B:364
    4026 
    4027 746 atoms, 800 bonds, 35 residues, 1 model selected 
    4028 
    4029 > select add #18/B:365
    4030 
    4031 766 atoms, 821 bonds, 36 residues, 1 model selected 
    4032 
    4033 > select add #18/B:366
    4034 
    4035 786 atoms, 842 bonds, 37 residues, 1 model selected 
    4036 
    4037 > select add #18/B:367
    4038 
    4039 806 atoms, 863 bonds, 38 residues, 1 model selected 
    4040 
    4041 > select add #18/B:368
    4042 
    4043 828 atoms, 887 bonds, 39 residues, 1 model selected 
    4044 
    4045 > select add #18/B:369
    4046 
    4047 848 atoms, 908 bonds, 40 residues, 1 model selected 
    4048 
    4049 > select add #18/B:370
    4050 
    4051 870 atoms, 932 bonds, 41 residues, 1 model selected 
    4052 
    4053 > select add #18/B:371
    4054 
    4055 892 atoms, 956 bonds, 42 residues, 1 model selected 
    4056 
    4057 > select add #18/B:411
    4058 
    4059 914 atoms, 980 bonds, 43 residues, 1 model selected 
    4060 
    4061 > select add #18/B:410
    4062 
    4063 936 atoms, 1004 bonds, 44 residues, 1 model selected 
    4064 
    4065 > select add #18/B:409
    4066 
    4067 956 atoms, 1025 bonds, 45 residues, 1 model selected 
    4068 
    4069 > select add #18/B:408
    4070 
    4071 976 atoms, 1046 bonds, 46 residues, 1 model selected 
    4072 
    4073 > select add #18/B:372
    4074 
    4075 998 atoms, 1070 bonds, 47 residues, 1 model selected 
    4076 
    4077 > select add #18/B:373
    4078 
    4079 1020 atoms, 1094 bonds, 48 residues, 1 model selected 
    4080 
    4081 > select add #18/B:407
    4082 
    4083 1040 atoms, 1115 bonds, 49 residues, 1 model selected 
    4084 
    4085 > select add #18/B:406
    4086 
    4087 1062 atoms, 1139 bonds, 50 residues, 1 model selected 
    4088 
    4089 > select add #18/B:405
    4090 
    4091 1082 atoms, 1160 bonds, 51 residues, 1 model selected 
    4092 
    4093 > select add #18/B:404
    4094 
    4095 1102 atoms, 1181 bonds, 52 residues, 1 model selected 
    4096 
    4097 > select add #18/B:403
    4098 
    4099 1124 atoms, 1205 bonds, 53 residues, 1 model selected 
    4100 
    4101 > select add #18/B:402
    4102 
    4103 1144 atoms, 1226 bonds, 54 residues, 1 model selected 
    4104 
    4105 > select add #18/B:374
    4106 
    4107 1164 atoms, 1247 bonds, 55 residues, 1 model selected 
    4108 
    4109 > select add #18/B:375
    4110 
    4111 1186 atoms, 1271 bonds, 56 residues, 1 model selected 
    4112 
    4113 > select add #18/B:401
    4114 
    4115 1208 atoms, 1295 bonds, 57 residues, 1 model selected 
    4116 
    4117 > select add #18/B:400
    4118 
    4119 1230 atoms, 1319 bonds, 58 residues, 1 model selected 
    4120 
    4121 > select add #18/B:399
    4122 
    4123 1250 atoms, 1340 bonds, 59 residues, 1 model selected 
    4124 
    4125 > select add #18/B:398
    4126 
    4127 1272 atoms, 1364 bonds, 60 residues, 1 model selected 
    4128 
    4129 > select add #18/B:397
    4130 
    4131 1294 atoms, 1388 bonds, 61 residues, 1 model selected 
    4132 
    4133 > select add #18/B:396
    4134 
    4135 1314 atoms, 1409 bonds, 62 residues, 1 model selected 
    4136 
    4137 > select add #18/B:395
    4138 
    4139 1336 atoms, 1433 bonds, 63 residues, 1 model selected 
    4140 
    4141 > select add #18/B:394
    4142 
    4143 1356 atoms, 1454 bonds, 64 residues, 1 model selected 
    4144 
    4145 > select add #18/B:393
    4146 
    4147 1376 atoms, 1475 bonds, 65 residues, 1 model selected 
    4148 
    4149 > select add #18/B:392
    4150 
    4151 1396 atoms, 1496 bonds, 66 residues, 1 model selected 
    4152 
    4153 > select add #18/B:391
    4154 
    4155 1418 atoms, 1520 bonds, 67 residues, 1 model selected 
    4156 
    4157 > select add #18/B:390
    4158 
    4159 1440 atoms, 1544 bonds, 68 residues, 1 model selected 
    4160 
    4161 > select add #18/B:389
    4162 
    4163 1462 atoms, 1568 bonds, 69 residues, 1 model selected 
    4164 
    4165 > select add #18/B:388
    4166 
    4167 1484 atoms, 1592 bonds, 70 residues, 1 model selected 
    4168 
    4169 > select add #18/B:387
    4170 
    4171 1506 atoms, 1616 bonds, 71 residues, 1 model selected 
    4172 
    4173 > select add #18/B:386
    4174 
    4175 1529 atoms, 1641 bonds, 72 residues, 1 model selected 
    4176 
    4177 > select add #18/B:385
    4178 
    4179 1551 atoms, 1665 bonds, 73 residues, 1 model selected 
    4180 
    4181 > select add #18/B:384
    4182 
    4183 1573 atoms, 1689 bonds, 74 residues, 1 model selected 
    4184 
    4185 > select add #18/B:383
    4186 
    4187 1593 atoms, 1710 bonds, 75 residues, 1 model selected 
    4188 
    4189 > select add #18/B:376
    4190 
    4191 1613 atoms, 1731 bonds, 76 residues, 1 model selected 
    4192 
    4193 > select add #18/B:377
    4194 
    4195 1635 atoms, 1755 bonds, 77 residues, 1 model selected 
    4196 
    4197 > select add #18/B:378
    4198 
    4199 1655 atoms, 1776 bonds, 78 residues, 1 model selected 
    4200 
    4201 > select add #18/B:379
    4202 
    4203 1678 atoms, 1801 bonds, 79 residues, 1 model selected 
    4204 
    4205 > select add #18/B:380
    4206 
    4207 1700 atoms, 1825 bonds, 80 residues, 1 model selected 
    4208 
    4209 > select add #18/B:381
    4210 
    4211 1720 atoms, 1846 bonds, 81 residues, 1 model selected 
    4212 
    4213 > select add #18/B:382
    4214 
    4215 1742 atoms, 1870 bonds, 82 residues, 1 model selected 
    4216 
    4217 > select ~sel & ##selected
    4218 
    4219 10604 atoms, 11882 bonds, 496 residues, 1 model selected 
    4220 
    4221 > delete atoms sel
    4222 
    4223 > delete bonds sel
    4224 
    4225 > show #!2 models
    4226 
    4227 > select clear
    4228 
    4229 > select #18/B:400
    4230 
    4231 22 atoms, 24 bonds, 1 residue, 1 model selected 
    4232 
    4233 > view matrix models #18,1,0,0,124.31,0,1,0,265.85,0,0,1,143.7
    4234 
    4235 > view matrix models #18,1,0,0,190.29,0,1,0,218.77,0,0,1,254.31
    4236 
    4237 > show #!20 models
    4238 
    4239 > view matrix models #18,1,0,0,185.02,0,1,0,212.5,0,0,1,259.12
    4240 
    4241 > ui mousemode right "rotate selected models"
    4242 
    4243 > view matrix models
    4244 > #18,0.96094,0.22241,-0.16471,196.92,-0.22068,0.97492,0.028967,208.21,0.16702,0.0085143,0.98592,261.75
    4245 
    4246 > view matrix models
    4247 > #18,0.88625,-0.029786,-0.46224,198.04,-0.24394,0.81832,-0.52043,221.09,0.39376,0.57399,0.71797,290.48
    4248 
    4249 > view matrix models
    4250 > #18,0.228,0.7319,0.64213,178.44,0.26271,0.5888,-0.76439,227.65,-0.93755,0.34298,-0.058025,293.33
    4251 
    4252 > view matrix models
    4253 > #18,-0.29655,0.42437,0.85555,156.08,0.32905,0.8864,-0.32562,223.41,-0.89654,0.18495,-0.4025,300.05
    4254 
    4255 > view matrix models
    4256 > #18,-0.1019,0.1874,0.97698,147.08,0.69044,0.72036,-0.06616,214.06,-0.71618,0.66781,-0.2028,310.6
    4257 
    4258 > view matrix models
    4259 > #18,-0.81192,0.077217,0.57864,148.28,0.47034,0.67366,0.57006,189.65,-0.34579,0.735,-0.58327,329.15
    4260 
    4261 > view matrix models
    4262 > #18,-0.83525,0.21539,0.50593,154.68,0.44357,0.80769,0.38844,199.38,-0.32497,0.54886,-0.77016,329.59
    4263 
    4264 > ui mousemode right "translate selected models"
    4265 
    4266 > view matrix models
    4267 > #18,-0.83525,0.21539,0.50593,178.73,0.44357,0.80769,0.38844,212.38,-0.32497,0.54886,-0.77016,270.7
    4268 
    4269 > view matrix models
    4270 > #18,-0.83525,0.21539,0.50593,181.22,0.44357,0.80769,0.38844,214.48,-0.32497,0.54886,-0.77016,266.51
    4271 
    4272 > ui mousemode right "rotate selected models"
    4273 
    4274 > view matrix models
    4275 > #18,0.049515,0.37543,0.92553,182.83,0.78182,0.56209,-0.26983,231.88,-0.62153,0.73696,-0.26568,252.72
    4276 
    4277 > view matrix models
    4278 > #18,0.10358,0.53357,0.83939,191.12,0.82645,0.42338,-0.37111,231.44,-0.5534,0.73215,-0.39712,257.62
    4279 
    4280 > ui mousemode right "translate selected models"
    4281 
    4282 > view matrix models
    4283 > #18,0.10358,0.53357,0.83939,182.55,0.82645,0.42338,-0.37111,219.16,-0.5534,0.73215,-0.39712,259
    4284 
    4285 > view matrix models
    4286 > #18,0.10358,0.53357,0.83939,198.62,0.82645,0.42338,-0.37111,218.04,-0.5534,0.73215,-0.39712,253.04
    4287 
    4288 > view matrix models
    4289 > #18,0.10358,0.53357,0.83939,195.01,0.82645,0.42338,-0.37111,207.3,-0.5534,0.73215,-0.39712,260.67
    4290 
    4291 > view matrix models
    4292 > #18,0.10358,0.53357,0.83939,197.94,0.82645,0.42338,-0.37111,208.89,-0.5534,0.73215,-0.39712,262.44
    4293 
    4294 > ui mousemode right "rotate selected models"
    4295 
    4296 > view matrix models
    4297 > #18,0.13436,0.45782,0.87883,194.68,0.75938,0.52219,-0.38814,211.72,-0.63662,0.71952,-0.2775,257.21
    4298 
    4299 > ui mousemode right "translate selected models"
    4300 
    4301 > view matrix models
    4302 > #18,0.13436,0.45782,0.87883,195.27,0.75938,0.52219,-0.38814,213.61,-0.63662,0.71952,-0.2775,260.73
    4303 
    4304 > view matrix models
    4305 > #18,0.13436,0.45782,0.87883,198.54,0.75938,0.52219,-0.38814,211.47,-0.63662,0.71952,-0.2775,258.44
    4306 
    4307 > view matrix models
    4308 > #18,0.13436,0.45782,0.87883,197.29,0.75938,0.52219,-0.38814,208.55,-0.63662,0.71952,-0.2775,260.21
    4309 
    4310 > ui mousemode right "rotate selected models"
    4311 
    4312 > view matrix models
    4313 > #18,0.032304,0.58865,0.80774,202.47,0.75986,0.51054,-0.40245,208.67,-0.64929,0.62677,-0.4308,262.22
    4314 
    4315 > view matrix models
    4316 > #18,0.11879,0.64558,0.7544,206.93,0.64539,0.52719,-0.55277,212.75,-0.75456,0.55254,-0.35402,256.25
    4317 
    4318 > ui mousemode right "translate selected models"
    4319 
    4320 > view matrix models
    4321 > #18,0.11879,0.64558,0.7544,202.2,0.64539,0.52719,-0.55277,209.14,-0.75456,0.55254,-0.35402,262.54
    4322 
    4323 > view matrix models
    4324 > #18,0.11879,0.64558,0.7544,200.53,0.64539,0.52719,-0.55277,210.65,-0.75456,0.55254,-0.35402,263.26
    4325 
    4326 > view matrix models
    4327 > #18,0.11879,0.64558,0.7544,199.91,0.64539,0.52719,-0.55277,211.86,-0.75456,0.55254,-0.35402,262.62
    4328 
    4329 > view matrix models
    4330 > #18,0.11879,0.64558,0.7544,199.68,0.64539,0.52719,-0.55277,211.62,-0.75456,0.55254,-0.35402,262.43
    4331 
    4332 > view matrix models
    4333 > #18,0.11879,0.64558,0.7544,198.9,0.64539,0.52719,-0.55277,212.77,-0.75456,0.55254,-0.35402,263.97
    4334 
    4335 > ui mousemode right "rotate selected models"
    4336 
    4337 > view matrix models
    4338 > #18,0.2436,0.53222,0.8108,195.01,0.48299,0.65838,-0.57728,215.75,-0.84106,0.53223,-0.096678,254.03
    4339 
    4340 > ui mousemode right "translate selected models"
    4341 
    4342 > view matrix models
    4343 > #18,0.2436,0.53222,0.8108,194.55,0.48299,0.65838,-0.57728,214.97,-0.84106,0.53223,-0.096678,253.78
    4344 
    4345 > view matrix models
    4346 > #18,0.2436,0.53222,0.8108,192.97,0.48299,0.65838,-0.57728,211.9,-0.84106,0.53223,-0.096678,258.34
    4347 
    4348 > view matrix models
    4349 > #18,0.2436,0.53222,0.8108,197.47,0.48299,0.65838,-0.57728,212.51,-0.84106,0.53223,-0.096678,255.99
    4350 
    4351 > view matrix models
    4352 > #18,0.2436,0.53222,0.8108,196.99,0.48299,0.65838,-0.57728,209.8,-0.84106,0.53223,-0.096678,258.6
    4353 
    4354 > view matrix models
    4355 > #18,0.2436,0.53222,0.8108,200.7,0.48299,0.65838,-0.57728,210.32,-0.84106,0.53223,-0.096678,258.79
    4356 
    4357 > view matrix models
    4358 > #18,0.2436,0.53222,0.8108,200.75,0.48299,0.65838,-0.57728,210.33,-0.84106,0.53223,-0.096678,258.76
    4359 
    4360 > view matrix models
    4361 > #18,0.2436,0.53222,0.8108,200.36,0.48299,0.65838,-0.57728,209.81,-0.84106,0.53223,-0.096678,258.96
    4362 
    4363 > select #20/E:358
    4364 
    4365 23 atoms, 25 bonds, 1 residue, 1 model selected 
    4366 
    4367 > select add #20/E:359
    4368 
    4369 43 atoms, 46 bonds, 2 residues, 1 model selected 
    4370 
    4371 > select add #20/E:360
    4372 
    4373 63 atoms, 67 bonds, 3 residues, 1 model selected 
    4374 
    4375 > select clear
    4376 
    4377 > select add #20/E:358
    4378 
    4379 23 atoms, 25 bonds, 1 residue, 1 model selected 
    4380 
    4381 > select add #20/E:359
    4382 
    4383 43 atoms, 46 bonds, 2 residues, 1 model selected 
    4384 
    4385 > select add #20/E:360
    4386 
    4387 63 atoms, 67 bonds, 3 residues, 1 model selected 
    4388 
    4389 > select add #20/E:361
    4390 
    4391 85 atoms, 91 bonds, 4 residues, 1 model selected 
    4392 
    4393 > select add #20/E:362
    4394 
    4395 108 atoms, 116 bonds, 5 residues, 1 model selected 
    4396 
    4397 > select add #20/E:363
    4398 
    4399 128 atoms, 137 bonds, 6 residues, 1 model selected 
    4400 Drag select of 269 atoms, 20 residues, 301 bonds 
    4401 
    4402 > delete atoms sel
    4403 
    4404 > delete bonds sel
    4405 
    4406 Drag select of 383 atoms, 9 residues, 38 pseudobonds, 132 bonds 
    4407 
    4408 > delete atoms (#!20 & sel)
    4409 
    4410 > delete bonds (#!20 & sel)
    4411 
    4412 Drag select of 2 cryosparc_P104_J81_mono_3dot25_map_emready.mrc , 129 atoms, 5
    4413 residues, 15 pseudobonds, 33 bonds 
    4414 
    4415 > select clear
    4416 
    4417 Drag select of 108 atoms, 2 residues, 14 pseudobonds, 14 bonds 
    4418 
    4419 > delete atoms (#!20 & sel)
    4420 
    4421 > delete bonds (#!20 & sel)
    4422 
    4423 > select add #20/E:386
    4424 
    4425 22 atoms, 24 bonds, 1 residue, 1 model selected 
    4426 
    4427 > select add #20/E:385
    4428 
    4429 44 atoms, 48 bonds, 2 residues, 1 model selected 
    4430 
    4431 > select add #20/E:384
    4432 
    4433 67 atoms, 73 bonds, 3 residues, 1 model selected 
    4434 
    4435 > select add #20/E:383
    4436 
    4437 89 atoms, 97 bonds, 4 residues, 1 model selected 
    4438 
    4439 > select add #20/E:382
    4440 
    4441 111 atoms, 121 bonds, 5 residues, 1 model selected 
    4442 
    4443 > select add #20/E:381
    4444 
    4445 131 atoms, 142 bonds, 6 residues, 1 model selected 
    4446 
    4447 > select add #20/E:380
    4448 
    4449 153 atoms, 166 bonds, 7 residues, 1 model selected 
    4450 
    4451 > select add #20/E:407
    4452 
    4453 175 atoms, 190 bonds, 8 residues, 1 model selected 
    4454 
    4455 > select add #20/E:408
    4456 
    4457 197 atoms, 214 bonds, 9 residues, 1 model selected 
    4458 
    4459 > select add #20/E:387
    4460 
    4461 219 atoms, 238 bonds, 10 residues, 1 model selected 
    4462 
    4463 > select add #20/E:389
    4464 
    4465 241 atoms, 262 bonds, 11 residues, 1 model selected 
    4466 
    4467 > select add #20/E:390
    4468 
    4469 261 atoms, 283 bonds, 12 residues, 1 model selected 
    4470 
    4471 > select add #20/E:388
    4472 
    4473 283 atoms, 307 bonds, 13 residues, 1 model selected 
    4474 
    4475 > delete atoms sel
    4476 
    4477 > delete bonds sel
    4478 
    4479 Drag select of 29 atoms, 4 pseudobonds, 2 bonds 
    4480 
    4481 > delete atoms (#!20 & sel)
    4482 
    4483 > delete bonds (#!20 & sel)
    4484 
    4485 > show #!1 models
    4486 
    4487 > hide #!2 models
    4488 
    4489 > hide #!1 models
    4490 
    4491 > combine #20 #18
    4492 
    4493 Remapping chain ID 'B' in fold_r_e_m_model_3.cif #18 to 'D' 
    4494 
    4495 > hide #!18 models
    4496 
    4497 > hide #!20 models
    4498 
    4499 > show #!2 models
    4500 
    4501 > hide #!2 models
    4502 
    4503 > show #!2 models
    4504 
    4505 > hide #!2 models
    4506 
    4507 > show #!2 models
    4508 
    4509 > hide #!2 models
    4510 
    4511 > select add #21/C:418
    4512 
    4513 22 atoms, 24 bonds, 1 residue, 1 model selected 
    4514 
    4515 > select add #21/C:417
    4516 
    4517 44 atoms, 48 bonds, 2 residues, 1 model selected 
    4518 
    4519 > select add #21/C:416
    4520 
    4521 66 atoms, 72 bonds, 3 residues, 1 model selected 
    4522 
    4523 > delete atoms sel
    4524 
    4525 > delete bonds sel
    4526 
    4527 Drag select of 6 atoms, 4 bonds 
    4528 
    4529 > delete atoms sel
    4530 
    4531 > delete bonds sel
    4532 
    4533 > select add #21/D:418
    4534 
    4535 22 atoms, 24 bonds, 1 residue, 1 model selected 
    4536 
    4537 > select add #21/C:356
    4538 
    4539 42 atoms, 45 bonds, 2 residues, 1 model selected 
    4540 
    4541 > select add #21/C:357
    4542 
    4543 62 atoms, 66 bonds, 3 residues, 1 model selected 
    4544 
    4545 > select subtract #21/C:356
    4546 
    4547 42 atoms, 45 bonds, 2 residues, 1 model selected 
    4548 
    4549 > select subtract #21/C:357
    4550 
    4551 22 atoms, 24 bonds, 1 residue, 1 model selected 
    4552 
    4553 > select add #21/D:358
    4554 
    4555 44 atoms, 48 bonds, 2 residues, 1 model selected 
    4556 
    4557 > select #21/D:364
    4558 
    4559 23 atoms, 25 bonds, 1 residue, 1 model selected 
    4560 
    4561 > select add #21/D:414
    4562 
    4563 43 atoms, 46 bonds, 2 residues, 1 model selected 
    4564 
    4565 > show #!1 models
    4566 
    4567 > view matrix models #21,1,0,0,-8.7693,0,1,0,-14.804,0,0,1,22.836
    4568 
    4569 > ui mousemode right "rotate selected models"
    4570 
    4571 > view matrix models
    4572 > #21,0.2543,0.94777,0.19251,-66.95,0.50727,0.038761,-0.86091,239.7,-0.82341,0.31659,-0.47092,453.9
    4573 
    4574 > view matrix models
    4575 > #21,-0.68016,0.60352,-0.4161,321.44,-0.13466,-0.66083,-0.73835,474.14,-0.72059,-0.44616,0.53075,355.18
    4576 
    4577 > view matrix models
    4578 > #21,-0.37511,0.92431,-0.070233,125,-0.85078,-0.37337,-0.36981,491.53,-0.36805,-0.078969,0.92645,129.66
    4579 
    4580 > view matrix models
    4581 > #21,-0.65309,0.7552,0.056089,186.44,-0.70017,-0.57396,-0.42466,508.49,-0.28851,-0.31662,0.90361,161.27
    4582 
    4583 > ui mousemode right "translate selected models"
    4584 
    4585 > view matrix models
    4586 > #21,-0.65309,0.7552,0.056089,171.52,-0.70017,-0.57396,-0.42466,546.06,-0.28851,-0.31662,0.90361,145.58
    4587 
    4588 > view matrix models
    4589 > #21,-0.65309,0.7552,0.056089,182.42,-0.70017,-0.57396,-0.42466,545.65,-0.28851,-0.31662,0.90361,176.43
    4590 
    4591 > view matrix models
    4592 > #21,-0.65309,0.7552,0.056089,198.67,-0.70017,-0.57396,-0.42466,567.67,-0.28851,-0.31662,0.90361,154.57
    4593 
    4594 > view matrix models
    4595 > #21,-0.65309,0.7552,0.056089,195.3,-0.70017,-0.57396,-0.42466,570.07,-0.28851,-0.31662,0.90361,157.05
    4596 
    4597 > fitmap #21 inMap #1
    4598 
    4599 Fit molecule combination (#21) to map
    4600 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 12111 atoms 
    4601 average map value = 2.076, steps = 228 
    4602 shifted from previous position = 16.7 
    4603 rotated from previous position = 23.1 degrees 
    4604 atoms outside contour = 6624, contour level = 1.6178 
    4605  
    4606 Position of combination (#21) relative to
    4607 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    4608 Matrix rotation and translation 
    4609 -0.41434302 0.90305975 -0.11315015 164.51293952 
    4610 -0.67684832 -0.38886612 -0.62502759 558.93801477 
    4611 -0.60843752 -0.18239033 0.77235843 224.57161218 
    4612 Axis 0.25826786 0.28898789 -0.92183714 
    4613 Axis point 285.41367365 263.97381758 0.00000000 
    4614 Rotation angle (degrees) 121.02589032 
    4615 Shift along axis -3.00373258 
    4616  
    4617 
    4618 > view matrix models
    4619 > #21,-0.41434,0.90306,-0.11315,159.45,-0.67685,-0.38887,-0.62503,563.41,-0.60844,-0.18239,0.77236,227
    4620 
    4621 > ui mousemode right "rotate selected models"
    4622 
    4623 > view matrix models
    4624 > #21,-0.22457,0.92092,-0.31856,160.95,-0.38652,-0.38427,-0.83841,548.1,-0.89452,-0.065158,0.44225,336.38
    4625 
    4626 > view matrix models
    4627 > #21,0.034869,0.99889,0.031721,17.242,-0.54531,0.045616,-0.83699,502.8,-0.83751,0.011887,0.5463,288.08
    4628 
    4629 > view matrix models
    4630 > #21,-0.10296,0.99107,-0.084696,72.449,-0.50476,-0.12543,-0.8541,529.09,-0.8571,-0.045187,0.51317,309.66
    4631 
    4632 > ui mousemode right "translate selected models"
    4633 
    4634 > view matrix models
    4635 > #21,-0.10296,0.99107,-0.084696,74.808,-0.50476,-0.12543,-0.8541,524.41,-0.8571,-0.045187,0.51317,312.53
    4636 
    4637 > fitmap #21 inMap #1
    4638 
    4639 Fit molecule combination (#21) to map
    4640 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 12111 atoms 
    4641 average map value = 3.563, steps = 236 
    4642 shifted from previous position = 5.67 
    4643 rotated from previous position = 27.3 degrees 
    4644 atoms outside contour = 2995, contour level = 1.6178 
    4645  
    4646 Position of combination (#21) relative to
    4647 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    4648 Matrix rotation and translation 
    4649 -0.47563704 0.87194109 0.11613841 131.02755956 
    4650 -0.61348298 -0.23419670 -0.75418203 541.89723455 
    4651 -0.63040307 -0.42996585 0.64631364 312.99000130 
    4652 Axis 0.19141461 0.44075206 -0.87698236 
    4653 Axis point 271.95736979 307.65925241 0.00000000 
    4654 Rotation angle (degrees) 122.12445172 
    4655 Shift along axis -10.56379909 
    4656  
    4657 
    4658 > select add #21/D:359
    4659 
    4660 65 atoms, 70 bonds, 3 residues, 1 model selected 
    4661 
    4662 > select add #21/D:361
    4663 
    4664 85 atoms, 91 bonds, 4 residues, 1 model selected 
    4665 
    4666 > select add #21/D:360
    4667 
    4668 108 atoms, 116 bonds, 5 residues, 1 model selected 
    4669 
    4670 > select add #21/D:362
    4671 
    4672 128 atoms, 137 bonds, 6 residues, 1 model selected 
    4673 
    4674 > select add #21/D:363
    4675 
    4676 150 atoms, 161 bonds, 7 residues, 1 model selected 
    4677 
    4678 > select add #21/D:419
    4679 
    4680 170 atoms, 182 bonds, 8 residues, 1 model selected 
    4681 
    4682 > select subtract #21/D:419
    4683 
    4684 150 atoms, 161 bonds, 7 residues, 1 model selected 
    4685 
    4686 > select add #21/D:418
    4687 
    4688 172 atoms, 185 bonds, 8 residues, 1 model selected 
    4689 
    4690 > select add #21/D:419
    4691 
    4692 192 atoms, 206 bonds, 9 residues, 1 model selected 
    4693 
    4694 > select add #21/D:417
    4695 
    4696 214 atoms, 230 bonds, 10 residues, 1 model selected 
    4697 
    4698 > select add #21/D:416
    4699 
    4700 237 atoms, 255 bonds, 11 residues, 1 model selected 
    4701 
    4702 > hide #!1 models
    4703 
    4704 > select add #21/D:415
    4705 
    4706 257 atoms, 276 bonds, 12 residues, 1 model selected 
    4707 
    4708 > select add #21/D:365
    4709 
    4710 277 atoms, 297 bonds, 13 residues, 1 model selected 
    4711 
    4712 > select add #21/D:366
    4713 
    4714 297 atoms, 318 bonds, 14 residues, 1 model selected 
    4715 
    4716 > select add #21/D:413
    4717 
    4718 320 atoms, 343 bonds, 15 residues, 1 model selected 
    4719 
    4720 > select add #21/D:412
    4721 
    4722 340 atoms, 364 bonds, 16 residues, 1 model selected 
    4723 
    4724 > select add #21/D:411
    4725 
    4726 362 atoms, 388 bonds, 17 residues, 1 model selected 
    4727 
    4728 > select add #21/D:410
    4729 
    4730 384 atoms, 412 bonds, 18 residues, 1 model selected 
    4731 
    4732 > select add #21/D:409
    4733 
    4734 404 atoms, 433 bonds, 19 residues, 1 model selected 
    4735 
    4736 > select add #21/D:408
    4737 
    4738 424 atoms, 454 bonds, 20 residues, 1 model selected 
    4739 
    4740 > select add #21/D:367
    4741 
    4742 444 atoms, 475 bonds, 21 residues, 1 model selected 
    4743 
    4744 > select add #21/D:368
    4745 
    4746 466 atoms, 499 bonds, 22 residues, 1 model selected 
    4747 
    4748 > select add #21/D:369
    4749 
    4750 486 atoms, 520 bonds, 23 residues, 1 model selected 
    4751 
    4752 > select add #21/D:370
    4753 
    4754 508 atoms, 544 bonds, 24 residues, 1 model selected 
    4755 
    4756 > select add #21/D:371
    4757 
    4758 530 atoms, 568 bonds, 25 residues, 1 model selected 
    4759 
    4760 > select add #21/D:407
    4761 
    4762 550 atoms, 589 bonds, 26 residues, 1 model selected 
    4763 
    4764 > select add #21/D:406
    4765 
    4766 572 atoms, 613 bonds, 27 residues, 1 model selected 
    4767 
    4768 > select add #21/D:372
    4769 
    4770 594 atoms, 637 bonds, 28 residues, 1 model selected 
    4771 
    4772 > select add #21/D:373
    4773 
    4774 616 atoms, 661 bonds, 29 residues, 1 model selected 
    4775 
    4776 > select add #21/D:374
    4777 
    4778 636 atoms, 682 bonds, 30 residues, 1 model selected 
    4779 
    4780 > select add #21/D:375
    4781 
    4782 658 atoms, 706 bonds, 31 residues, 1 model selected 
    4783 
    4784 > select add #21/D:405
    4785 
    4786 678 atoms, 727 bonds, 32 residues, 1 model selected 
    4787 
    4788 > select add #21/D:404
    4789 
    4790 698 atoms, 748 bonds, 33 residues, 1 model selected 
    4791 
    4792 > select add #21/D:403
    4793 
    4794 720 atoms, 772 bonds, 34 residues, 1 model selected 
    4795 
    4796 > select add #21/D:402
    4797 
    4798 740 atoms, 793 bonds, 35 residues, 1 model selected 
    4799 
    4800 > select add #21/D:401
    4801 
    4802 762 atoms, 817 bonds, 36 residues, 1 model selected 
    4803 
    4804 > select add #21/D:400
    4805 
    4806 784 atoms, 841 bonds, 37 residues, 1 model selected 
    4807 
    4808 > select add #21/D:399
    4809 
    4810 804 atoms, 862 bonds, 38 residues, 1 model selected 
    4811 
    4812 > select add #21/D:398
    4813 
    4814 826 atoms, 886 bonds, 39 residues, 1 model selected 
    4815 
    4816 > select add #21/D:397
    4817 
    4818 848 atoms, 910 bonds, 40 residues, 1 model selected 
    4819 
    4820 > select add #21/D:396
    4821 
    4822 868 atoms, 931 bonds, 41 residues, 1 model selected 
    4823 
    4824 > select add #21/D:376
    4825 
    4826 888 atoms, 952 bonds, 42 residues, 1 model selected 
    4827 
    4828 > select add #21/D:377
    4829 
    4830 910 atoms, 976 bonds, 43 residues, 1 model selected 
    4831 
    4832 > select add #21/D:378
    4833 
    4834 930 atoms, 997 bonds, 44 residues, 1 model selected 
    4835 
    4836 > select add #21/D:379
    4837 
    4838 953 atoms, 1022 bonds, 45 residues, 1 model selected 
    4839 
    4840 > select add #21/D:380
    4841 
    4842 975 atoms, 1046 bonds, 46 residues, 1 model selected 
    4843 
    4844 > select add #21/D:381
    4845 
    4846 995 atoms, 1067 bonds, 47 residues, 1 model selected 
    4847 
    4848 > select add #21/D:382
    4849 
    4850 1017 atoms, 1091 bonds, 48 residues, 1 model selected 
    4851 
    4852 > select add #21/D:383
    4853 
    4854 1037 atoms, 1112 bonds, 49 residues, 1 model selected 
    4855 
    4856 > select add #21/D:384
    4857 
    4858 1059 atoms, 1136 bonds, 50 residues, 1 model selected 
    4859 
    4860 > select add #21/D:394
    4861 
    4862 1079 atoms, 1157 bonds, 51 residues, 1 model selected 
    4863 
    4864 > select add #21/D:395
    4865 
    4866 1101 atoms, 1181 bonds, 52 residues, 1 model selected 
    4867 
    4868 > select add #21/D:393
    4869 
    4870 1121 atoms, 1202 bonds, 53 residues, 1 model selected 
    4871 
    4872 > select add #21/H:104
    4873 
    4874 1143 atoms, 1226 bonds, 54 residues, 1 model selected 
    4875 
    4876 > select subtract #21/H:104
    4877 
    4878 1121 atoms, 1202 bonds, 53 residues, 1 model selected 
    4879 
    4880 > select add #21/D:392
    4881 
    4882 1141 atoms, 1223 bonds, 54 residues, 1 model selected 
    4883 
    4884 > select add #21/D:391
    4885 
    4886 1163 atoms, 1247 bonds, 55 residues, 1 model selected 
    4887 
    4888 > select add #21/D:390
    4889 
    4890 1185 atoms, 1271 bonds, 56 residues, 1 model selected 
    4891 
    4892 > select add #21/D:389
    4893 
    4894 1207 atoms, 1295 bonds, 57 residues, 1 model selected 
    4895 
    4896 > select add #21/D:388
    4897 
    4898 1229 atoms, 1319 bonds, 58 residues, 1 model selected 
    4899 
    4900 > select add #21/D:387
    4901 
    4902 1251 atoms, 1343 bonds, 59 residues, 1 model selected 
    4903 
    4904 > select add #21/D:386
    4905 
    4906 1274 atoms, 1368 bonds, 60 residues, 1 model selected 
    4907 
    4908 > select add #21/D:385
    4909 
    4910 1296 atoms, 1392 bonds, 61 residues, 1 model selected 
    4911 
    4912 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-21.pdb models #21
    4913 > selectedOnly true relModel #21
    4914 
    4915 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-21.pdb
    4916 
    4917 Chain information for R-21.pdb #22 
    4918 --- 
    4919 Chain | Description 
    4920 D | No description available 
    4921  
    4922 
    4923 > delete atoms sel
    4924 
    4925 > delete bonds sel
    4926 
    4927 > show #!1 models
    4928 
    4929 > select #22/D:411
    4930 
    4931 22 atoms, 24 bonds, 1 residue, 1 model selected 
    4932 
    4933 > view matrix models #22,1,0,0,32.601,0,1,0,-6.6747,0,0,1,-4.5262
    4934 
    4935 > view matrix models #22,1,0,0,59.568,0,1,0,-0.43732,0,0,1,58.471
    4936 
    4937 > view matrix models #22,1,0,0,53.335,0,1,0,30.735,0,0,1,28.222
    4938 
    4939 > ui mousemode right "rotate selected models"
    4940 
    4941 > view matrix models
    4942 > #22,0.92782,0.04429,-0.3704,150.09,-0.37303,0.1053,-0.92182,479.46,-0.0018247,0.99345,0.11422,75.944
    4943 
    4944 > view matrix models
    4945 > #22,0.7605,-0.36885,0.53442,35.908,0.45318,-0.28794,-0.84363,354.44,0.46505,0.88377,-0.051822,37.047
    4946 
    4947 > view matrix models
    4948 > #22,0.81848,-0.020995,0.57415,-43.742,0.49794,0.52445,-0.69066,172.81,-0.28661,0.85118,0.4397,80.211
    4949 
    4950 > view matrix models
    4951 > #22,0.88778,0.43613,-0.14707,39.222,0.088842,-0.47592,-0.87499,469.32,-0.4516,0.76374,-0.46126,346.05
    4952 
    4953 > view matrix models
    4954 > #22,0.8101,0.44431,-0.38253,110.67,-0.068376,-0.57641,-0.8143,504.22,-0.58229,0.68582,-0.43657,380.29
    4955 
    4956 > view matrix models
    4957 > #22,0.7929,0.55306,-0.2558,65.594,-0.26409,-0.066437,-0.96221,495.3,-0.54916,0.83049,0.093379,221.74
    4958 
    4959 > ui mousemode right "translate selected models"
    4960 
    4961 > view matrix models
    4962 > #22,0.7929,0.55306,-0.2558,65.023,-0.26409,-0.066437,-0.96221,507.62,-0.54916,0.83049,0.093379,204.83
    4963 
    4964 > view matrix models
    4965 > #22,0.7929,0.55306,-0.2558,61.573,-0.26409,-0.066437,-0.96221,513.18,-0.54916,0.83049,0.093379,200.72
    4966 
    4967 > ui mousemode right "rotate selected models"
    4968 
    4969 > view matrix models
    4970 > #22,0.69503,0.52371,-0.49261,143.81,0.046275,-0.71631,-0.69624,493.26,-0.71749,0.46111,-0.52209,445.53
    4971 
    4972 > view matrix models
    4973 > #22,-0.090132,0.54352,-0.83454,385.9,-0.40549,-0.78538,-0.46771,543.67,-0.90964,0.29625,0.29118,317.05
    4974 
    4975 > ui mousemode right "translate selected models"
    4976 
    4977 > view matrix models
    4978 > #22,-0.090132,0.54352,-0.83454,376.24,-0.40549,-0.78538,-0.46771,547.05,-0.90964,0.29625,0.29118,311.22
    4979 
    4980 > view matrix models
    4981 > #22,-0.090132,0.54352,-0.83454,374.18,-0.40549,-0.78538,-0.46771,545.02,-0.90964,0.29625,0.29118,304.32
    4982 
    4983 > view matrix models
    4984 > #22,-0.090132,0.54352,-0.83454,377.5,-0.40549,-0.78538,-0.46771,542.06,-0.90964,0.29625,0.29118,305.61
    4985 
    4986 > view matrix models
    4987 > #22,-0.090132,0.54352,-0.83454,376.78,-0.40549,-0.78538,-0.46771,541.81,-0.90964,0.29625,0.29118,306.47
    4988 
    4989 > view matrix models
    4990 > #22,-0.090132,0.54352,-0.83454,376.78,-0.40549,-0.78538,-0.46771,541.9,-0.90964,0.29625,0.29118,306.4
    4991 
    4992 > hide #!1 models
    4993 
    4994 > view matrix models
    4995 > #22,-0.090132,0.54352,-0.83454,376.37,-0.40549,-0.78538,-0.46771,540.82,-0.90964,0.29625,0.29118,307.28
    4996 
    4997 > view matrix models
    4998 > #22,-0.090132,0.54352,-0.83454,375.98,-0.40549,-0.78538,-0.46771,540.43,-0.90964,0.29625,0.29118,307.52
    4999 
    5000 > view matrix models
    5001 > #22,-0.090132,0.54352,-0.83454,376.33,-0.40549,-0.78538,-0.46771,540.24,-0.90964,0.29625,0.29118,307.14
    5002 
    5003 > show #!1 models
    5004 
    5005 > hide #!1 models
    5006 
    5007 > select #22/D:416
    5008 
    5009 23 atoms, 25 bonds, 1 residue, 1 model selected 
    5010 
    5011 > select add #22/D:359
    5012 
    5013 45 atoms, 49 bonds, 2 residues, 1 model selected 
    5014 
    5015 > select add #22/D:360
    5016 
    5017 68 atoms, 74 bonds, 3 residues, 1 model selected 
    5018 
    5019 > select add #22/D:361
    5020 
    5021 88 atoms, 95 bonds, 4 residues, 1 model selected 
    5022 
    5023 > select add #22/D:362
    5024 
    5025 108 atoms, 116 bonds, 5 residues, 1 model selected 
    5026 
    5027 > select add #22/D:415
    5028 
    5029 128 atoms, 137 bonds, 6 residues, 1 model selected 
    5030 
    5031 > select add #22/D:414
    5032 
    5033 148 atoms, 158 bonds, 7 residues, 1 model selected 
    5034 
    5035 > select add #22/D:413
    5036 
    5037 171 atoms, 183 bonds, 8 residues, 1 model selected 
    5038 
    5039 > select add #22/D:412
    5040 
    5041 191 atoms, 204 bonds, 9 residues, 1 model selected 
    5042 
    5043 > select add #22/D:363
    5044 
    5045 213 atoms, 228 bonds, 10 residues, 1 model selected 
    5046 
    5047 > select add #22/D:364
    5048 
    5049 236 atoms, 253 bonds, 11 residues, 1 model selected 
    5050 
    5051 > select add #22/D:365
    5052 
    5053 256 atoms, 274 bonds, 12 residues, 1 model selected 
    5054 
    5055 > select add #22/D:366
    5056 
    5057 276 atoms, 295 bonds, 13 residues, 1 model selected 
    5058 
    5059 > select add #22/D:367
    5060 
    5061 296 atoms, 316 bonds, 14 residues, 1 model selected 
    5062 
    5063 > select add #22/D:368
    5064 
    5065 318 atoms, 340 bonds, 15 residues, 1 model selected 
    5066 
    5067 > select add #22/D:369
    5068 
    5069 338 atoms, 361 bonds, 16 residues, 1 model selected 
    5070 
    5071 > select add #22/D:370
    5072 
    5073 360 atoms, 385 bonds, 17 residues, 1 model selected 
    5074 
    5075 > select add #22/D:411
    5076 
    5077 382 atoms, 409 bonds, 18 residues, 1 model selected 
    5078 
    5079 > select add #22/D:410
    5080 
    5081 404 atoms, 433 bonds, 19 residues, 1 model selected 
    5082 
    5083 > select add #22/D:409
    5084 
    5085 424 atoms, 454 bonds, 20 residues, 1 model selected 
    5086 
    5087 > select add #22/D:408
    5088 
    5089 444 atoms, 475 bonds, 21 residues, 1 model selected 
    5090 
    5091 > select add #22/D:407
    5092 
    5093 464 atoms, 496 bonds, 22 residues, 1 model selected 
    5094 
    5095 > select add #22/D:406
    5096 
    5097 486 atoms, 520 bonds, 23 residues, 1 model selected 
    5098 
    5099 > select add #22/D:372
    5100 
    5101 508 atoms, 544 bonds, 24 residues, 1 model selected 
    5102 
    5103 > select add #22/D:371
    5104 
    5105 530 atoms, 568 bonds, 25 residues, 1 model selected 
    5106 
    5107 > select add #22/D:373
    5108 
    5109 552 atoms, 592 bonds, 26 residues, 1 model selected 
    5110 
    5111 > select add #22/D:374
    5112 
    5113 572 atoms, 613 bonds, 27 residues, 1 model selected 
    5114 
    5115 > select add #22/D:405
    5116 
    5117 592 atoms, 634 bonds, 28 residues, 1 model selected 
    5118 
    5119 > select add #22/D:404
    5120 
    5121 612 atoms, 655 bonds, 29 residues, 1 model selected 
    5122 
    5123 > select add #22/D:403
    5124 
    5125 634 atoms, 679 bonds, 30 residues, 1 model selected 
    5126 
    5127 > select add #22/D:375
    5128 
    5129 656 atoms, 703 bonds, 31 residues, 1 model selected 
    5130 
    5131 > select add #22/D:376
    5132 
    5133 676 atoms, 724 bonds, 32 residues, 1 model selected 
    5134 
    5135 > select add #22/D:377
    5136 
    5137 698 atoms, 748 bonds, 33 residues, 1 model selected 
    5138 
    5139 > select add #22/D:402
    5140 
    5141 718 atoms, 769 bonds, 34 residues, 1 model selected 
    5142 
    5143 > select add #22/D:401
    5144 
    5145 740 atoms, 793 bonds, 35 residues, 1 model selected 
    5146 
    5147 > select add #22/D:400
    5148 
    5149 762 atoms, 817 bonds, 36 residues, 1 model selected 
    5150 
    5151 > select add #22/D:399
    5152 
    5153 782 atoms, 838 bonds, 37 residues, 1 model selected 
    5154 
    5155 > select add #22/D:397
    5156 
    5157 804 atoms, 862 bonds, 38 residues, 1 model selected 
    5158 
    5159 > select add #22/D:398
    5160 
    5161 826 atoms, 886 bonds, 39 residues, 1 model selected 
    5162 
    5163 > select add #22/D:381
    5164 
    5165 846 atoms, 907 bonds, 40 residues, 1 model selected 
    5166 
    5167 > select add #22/D:380
    5168 
    5169 868 atoms, 931 bonds, 41 residues, 1 model selected 
    5170 
    5171 > select add #22/D:379
    5172 
    5173 891 atoms, 956 bonds, 42 residues, 1 model selected 
    5174 
    5175 > select add #22/D:378
    5176 
    5177 911 atoms, 977 bonds, 43 residues, 1 model selected 
    5178 
    5179 > select add #22/D:396
    5180 
    5181 931 atoms, 998 bonds, 44 residues, 1 model selected 
    5182 
    5183 > select add #22/D:395
    5184 
    5185 953 atoms, 1022 bonds, 45 residues, 1 model selected 
    5186 
    5187 > select add #22/D:394
    5188 
    5189 973 atoms, 1043 bonds, 46 residues, 1 model selected 
    5190 
    5191 > select add #22/D:393
    5192 
    5193 993 atoms, 1064 bonds, 47 residues, 1 model selected 
    5194 
    5195 > select add #22/D:382
    5196 
    5197 1015 atoms, 1088 bonds, 48 residues, 1 model selected 
    5198 
    5199 > select add #22/D:383
    5200 
    5201 1035 atoms, 1109 bonds, 49 residues, 1 model selected 
    5202 
    5203 > select add #22/D:384
    5204 
    5205 1057 atoms, 1133 bonds, 50 residues, 1 model selected 
    5206 
    5207 > select add #22/D:385
    5208 
    5209 1079 atoms, 1157 bonds, 51 residues, 1 model selected 
    5210 
    5211 > select add #22/D:386
    5212 
    5213 1102 atoms, 1182 bonds, 52 residues, 1 model selected 
    5214 
    5215 > select add #22/D:387
    5216 
    5217 1124 atoms, 1206 bonds, 53 residues, 1 model selected 
    5218 
    5219 > select add #22/D:388
    5220 
    5221 1146 atoms, 1230 bonds, 54 residues, 1 model selected 
    5222 
    5223 > select add #22/D:389
    5224 
    5225 1168 atoms, 1254 bonds, 55 residues, 1 model selected 
    5226 
    5227 > select add #22/D:390
    5228 
    5229 1190 atoms, 1278 bonds, 56 residues, 1 model selected 
    5230 
    5231 > select add #22/D:392
    5232 
    5233 1210 atoms, 1299 bonds, 57 residues, 1 model selected 
    5234 
    5235 > select add #22/D:391
    5236 
    5237 1232 atoms, 1323 bonds, 58 residues, 1 model selected 
    5238 
    5239 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R21-1.pdb models #22
    5240 > selectedOnly true relModel #22
    5241 
    5242 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R21-1.pdb
    5243 
    5244 Chain information for R21-1.pdb #23 
    5245 --- 
    5246 Chain | Description 
    5247 D | No description available 
    5248  
    5249 
    5250 > delete atoms sel
    5251 
    5252 > delete bonds sel
    5253 
    5254 > select clear
    5255 
    5256 > select #23/D:402
    5257 
    5258 20 atoms, 21 bonds, 1 residue, 1 model selected 
    5259 
    5260 > view matrix models #23,1,0,0,31.661,0,1,0,28.766,0,0,1,-19.39
    5261 
    5262 > view matrix models #23,1,0,0,51.894,0,1,0,53.415,0,0,1,21.675
    5263 
    5264 > ui mousemode right "rotate selected models"
    5265 
    5266 > view matrix models
    5267 > #23,0.84862,-0.51482,-0.12168,195.28,0.065385,0.33034,-0.9416,370.51,0.52495,0.7911,0.31399,-52.936
    5268 
    5269 > view matrix models
    5270 > #23,0.31409,-0.83914,0.44406,224.57,0.62251,-0.17113,-0.76368,294.15,0.71682,0.5163,0.46862,-84.73
    5271 
    5272 > view matrix models
    5273 > #23,0.035268,-0.84629,0.53156,262.92,0.99619,0.072231,0.048903,-14.573,-0.079781,0.52781,0.84561,-10.161
    5274 
    5275 > view matrix models
    5276 > #23,0.65019,-0.32329,0.68755,13.902,0.72928,0.51936,-0.44544,85.141,-0.21308,0.79104,0.57345,39.114
    5277 
    5278 > view matrix models
    5279 > #23,0.88301,0.46069,0.089827,-20.01,0.043608,0.11003,-0.99297,423.29,-0.46733,0.88072,0.077068,194.81
    5280 
    5281 > view matrix models
    5282 > #23,0.2507,0.46378,-0.84974,332.47,-0.29788,-0.79823,-0.52355,529.99,-0.9211,0.38437,-0.061966,401.95
    5283 
    5284 > view matrix models
    5285 > #23,-0.016611,0.2627,-0.96474,447.48,-0.31744,-0.91633,-0.24405,487.06,-0.94813,0.30219,0.098612,382.88
    5286 
    5287 > view matrix models
    5288 > #23,-0.22401,0.081278,-0.97119,521.24,-0.32747,-0.94486,-0.0035425,436.89,-0.91792,0.31724,0.23827,341.18
    5289 
    5290 > ui mousemode right "translate selected models"
    5291 
    5292 > view matrix models
    5293 > #23,-0.22401,0.081278,-0.97119,507.69,-0.32747,-0.94486,-0.0035425,436.52,-0.91792,0.31724,0.23827,332.72
    5294 
    5295 > view matrix models
    5296 > #23,-0.22401,0.081278,-0.97119,507.04,-0.32747,-0.94486,-0.0035425,436.9,-0.91792,0.31724,0.23827,332.39
    5297 
    5298 > view matrix models
    5299 > #23,-0.22401,0.081278,-0.97119,507.5,-0.32747,-0.94486,-0.0035425,429.18,-0.91792,0.31724,0.23827,335.76
    5300 
    5301 > view matrix models
    5302 > #23,-0.22401,0.081278,-0.97119,506.69,-0.32747,-0.94486,-0.0035425,427.4,-0.91792,0.31724,0.23827,335.91
    5303 
    5304 > view matrix models
    5305 > #23,-0.22401,0.081278,-0.97119,507.21,-0.32747,-0.94486,-0.0035425,427.46,-0.91792,0.31724,0.23827,336.02
    5306 
    5307 > view matrix models
    5308 > #23,-0.22401,0.081278,-0.97119,507.57,-0.32747,-0.94486,-0.0035425,429.03,-0.91792,0.31724,0.23827,334.92
    5309 
    5310 > show #!1 models
    5311 
    5312 > view matrix models
    5313 > #23,-0.22401,0.081278,-0.97119,508.96,-0.32747,-0.94486,-0.0035425,438.13,-0.91792,0.31724,0.23827,327.9
    5314 
    5315 > ui mousemode right "rotate selected models"
    5316 
    5317 > view matrix models
    5318 > #23,-0.029609,0.39528,-0.91808,405.29,-0.1057,-0.91457,-0.39036,478.63,-0.99396,0.085487,0.068863,421.03
    5319 
    5320 > view matrix models
    5321 > #23,-0.43495,0.11721,-0.89279,528.17,-0.28227,-0.95926,0.011587,427.51,-0.85507,0.25705,0.45032,274.43
    5322 
    5323 > view matrix models
    5324 > #23,-0.094745,0.39418,-0.91413,417.95,-0.23357,-0.90144,-0.3645,496.95,-0.96771,0.17898,0.17747,374.84
    5325 
    5326 > view matrix models
    5327 > #23,0.060323,0.47489,-0.87797,364.22,-0.26458,-0.84051,-0.4728,519.11,-0.96248,0.26081,0.074944,384.73
    5328 
    5329 > view matrix models
    5330 > #23,-0.16469,0.37084,-0.91398,436.16,-0.32472,-0.89536,-0.30478,500.77,-0.93136,0.24659,0.26787,335.03
    5331 
    5332 > ui mousemode right "translate selected models"
    5333 
    5334 > view matrix models
    5335 > #23,-0.16469,0.37084,-0.91398,441.84,-0.32472,-0.89536,-0.30478,498.28,-0.93136,0.24659,0.26787,335.65
    5336 
    5337 > view matrix models
    5338 > #23,-0.16469,0.37084,-0.91398,443.22,-0.32472,-0.89536,-0.30478,497.64,-0.93136,0.24659,0.26787,334.82
    5339 
    5340 > view matrix models
    5341 > #23,-0.16469,0.37084,-0.91398,438.99,-0.32472,-0.89536,-0.30478,496.57,-0.93136,0.24659,0.26787,333.24
    5342 
    5343 > view matrix models
    5344 > #23,-0.16469,0.37084,-0.91398,441.78,-0.32472,-0.89536,-0.30478,495.31,-0.93136,0.24659,0.26787,331.91
    5345 
    5346 > view matrix models
    5347 > #23,-0.16469,0.37084,-0.91398,439.87,-0.32472,-0.89536,-0.30478,494.87,-0.93136,0.24659,0.26787,331.91
    5348 
    5349 > view matrix models
    5350 > #23,-0.16469,0.37084,-0.91398,442.27,-0.32472,-0.89536,-0.30478,492.32,-0.93136,0.24659,0.26787,329.29
    5351 
    5352 > view matrix models
    5353 > #23,-0.16469,0.37084,-0.91398,437.59,-0.32472,-0.89536,-0.30478,492.19,-0.93136,0.24659,0.26787,331.85
    5354 
    5355 > view matrix models
    5356 > #23,-0.16469,0.37084,-0.91398,437.6,-0.32472,-0.89536,-0.30478,492.16,-0.93136,0.24659,0.26787,331.89
    5357 
    5358 > volume #1 level 3.29
    5359 
    5360 > volume #1 level 4.85
    5361 
    5362 > volume #1 level 3.178
    5363 
    5364 > volume #1 level 2.844
    5365 
    5366 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-21.pdb
    5367 
    5368 Chain information for R-21.pdb #24 
    5369 --- 
    5370 Chain | Description 
    5371 D | No description available 
    5372  
    5373 
    5374 > close #24
    5375 
    5376 > combine #20 #18
    5377 
    5378 Remapping chain ID 'B' in fold_r_e_m_model_3.cif #18 to 'D' 
    5379 
    5380 > hide #!21 models
    5381 
    5382 > hide #22 models
    5383 
    5384 > hide #23 models
    5385 
    5386 > select #24/H:541
    5387 
    5388 23 atoms, 25 bonds, 1 residue, 1 model selected 
    5389 
    5390 > view matrix models #24,1,0,0,-19.338,0,1,0,-30.373,0,0,1,54.63
    5391 
    5392 > view matrix models #24,1,0,0,-9.2457,0,1,0,26.006,0,0,1,20.565
    5393 
    5394 > ui mousemode right "rotate selected models"
    5395 
    5396 > view matrix models
    5397 > #24,-0.20314,0.82199,0.53204,-22.855,-0.050577,0.53384,-0.84407,303.25,-0.97784,-0.19838,-0.066871,490.21
    5398 
    5399 > view matrix models
    5400 > #24,-0.84714,0.3771,-0.37436,387.68,0.465,0.18518,-0.86573,264,-0.25714,-0.90747,-0.33223,526.39
    5401 
    5402 > view matrix models
    5403 > #24,-0.59609,0.74776,-0.29247,250.29,-0.26791,-0.52862,-0.80547,533.36,-0.7569,-0.40177,0.51544,355.8
    5404 
    5405 > view matrix models
    5406 > #24,-0.60438,0.78241,-0.15021,215.05,-0.24119,-0.35938,-0.90148,517.68,-0.75931,-0.50861,0.40591,399.35
    5407 
    5408 > view matrix models
    5409 > #24,-0.62855,0.75276,-0.19565,235.27,-0.20322,-0.40176,-0.89291,515.64,-0.75076,-0.52148,0.4055,400
    5410 
    5411 > ui mousemode right "translate selected models"
    5412 
    5413 > view matrix models
    5414 > #24,-0.62855,0.75276,-0.19565,243.83,-0.20322,-0.40176,-0.89291,508.04,-0.75076,-0.52148,0.4055,420.59
    5415 
    5416 > view matrix models
    5417 > #24,-0.62855,0.75276,-0.19565,246.06,-0.20322,-0.40176,-0.89291,512.51,-0.75076,-0.52148,0.4055,412.99
    5418 
    5419 > fitmap #24 inMap #1
    5420 
    5421 Fit molecule combination (#24) to map
    5422 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 12183 atoms 
    5423 average map value = 3.543, steps = 240 
    5424 shifted from previous position = 11.2 
    5425 rotated from previous position = 26.8 degrees 
    5426 atoms outside contour = 4369, contour level = 2.8438 
    5427  
    5428 Position of combination (#24) relative to
    5429 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    5430 Matrix rotation and translation 
    5431 -0.47578467 0.87186953 0.11607097 131.08230032 
    5432 -0.61316610 -0.23416980 -0.75444804 541.87541903 
    5433 -0.63059995 -0.43012559 0.64601524 313.11404992 
    5434 Axis 0.19150712 0.44089699 -0.87688931 
    5435 Axis point 271.97831464 307.70470298 0.00000000 
    5436 Rotation angle (degrees) 122.13863044 
    5437 Shift along axis -10.55192821 
    5438  
    5439 
    5440 > hide #!24 models
    5441 
    5442 > show #!20 models
    5443 
    5444 > hide #!20 models
    5445 
    5446 > show #!21 models
    5447 
    5448 > show #22 models
    5449 
    5450 > show #23 models
    5451 
    5452 > volume #1 level 1.417
    5453 
    5454 > volume #1 level 0.9492
    5455 
    5456 > select #23/D:397
    5457 
    5458 22 atoms, 24 bonds, 1 residue, 1 model selected 
    5459 
    5460 > ui mousemode right "move picked models"
    5461 
    5462 > ui mousemode right "rotate selected models"
    5463 
    5464 > view matrix models
    5465 > #23,0.064294,0.22331,-0.97262,427.84,0.51162,-0.84418,-0.16,275.98,-0.8568,-0.48733,-0.16853,538.23
    5466 
    5467 > view matrix models
    5468 > #23,-0.32366,-0.41661,-0.84951,583.02,0.53281,-0.82221,0.20022,182.78,-0.78189,-0.38782,0.48809,351.27
    5469 
    5470 > view matrix models
    5471 > #23,-0.2721,-0.84305,-0.46393,550.23,0.67106,-0.51178,0.53643,24.494,-0.68967,-0.16536,0.70499,245.14
    5472 
    5473 > ui mousemode right "translate selected models"
    5474 
    5475 > view matrix models
    5476 > #23,-0.2721,-0.84305,-0.46393,561.47,0.67106,-0.51178,0.53643,25.485,-0.68967,-0.16536,0.70499,240.68
    5477 
    5478 > view matrix models
    5479 > #23,-0.2721,-0.84305,-0.46393,563.68,0.67106,-0.51178,0.53643,25.225,-0.68967,-0.16536,0.70499,240.91
    5480 
    5481 > view matrix models
    5482 > #23,-0.2721,-0.84305,-0.46393,552.81,0.67106,-0.51178,0.53643,39.033,-0.68967,-0.16536,0.70499,245.5
    5483 
    5484 > view matrix models
    5485 > #23,-0.2721,-0.84305,-0.46393,563.06,0.67106,-0.51178,0.53643,44.25,-0.68967,-0.16536,0.70499,248.62
    5486 
    5487 > view matrix models
    5488 > #23,-0.2721,-0.84305,-0.46393,564.22,0.67106,-0.51178,0.53643,42.845,-0.68967,-0.16536,0.70499,250.93
    5489 
    5490 > ui mousemode right "rotate selected models"
    5491 
    5492 > view matrix models
    5493 > #23,-0.24549,-0.94209,-0.22847,519.08,0.7231,-0.33493,0.60412,-12.458,-0.64565,-0.016898,0.76344,204.09
    5494 
    5495 > view matrix models
    5496 > #23,-0.13133,-0.97875,-0.15749,484.54,0.98867,-0.14097,0.051618,31.887,-0.072722,-0.14893,0.98617,53.847
    5497 
    5498 > view matrix models
    5499 > #23,-0.28724,-0.89745,-0.33478,545.72,0.90219,-0.3709,0.22019,46.994,-0.32178,-0.23879,0.91621,136.56
    5500 
    5501 > view matrix models
    5502 > #23,-0.15331,-0.94952,-0.27369,511.88,0.97498,-0.10022,-0.19843,87.247,0.16099,-0.29727,0.94112,39.928
    5503 
    5504 > view matrix models
    5505 > #23,-0.44419,-0.75747,-0.47848,589.63,0.81328,-0.56494,0.13933,115.89,-0.37585,-0.32725,0.86698,173.6
    5506 
    5507 > view matrix models
    5508 > #23,-0.23981,-0.96402,-0.11468,494.54,0.95582,-0.25513,0.14597,34.87,-0.16998,-0.074607,0.98262,62.855
    5509 
    5510 > view matrix models
    5511 > #23,-0.0071859,-0.98983,-0.14207,456.87,0.80742,0.078073,-0.58478,184.74,0.58993,-0.11891,0.79865,-44.325
    5512 
    5513 > view matrix models
    5514 > #23,-0.23882,-0.95304,-0.18625,509.48,0.41675,0.072648,-0.90611,342.7,0.87709,-0.29402,0.37983,23.28
    5515 
    5516 > view matrix models
    5517 > #23,-0.34726,-0.93451,-0.078079,503.44,0.90886,-0.3559,0.21748,43.973,-0.23102,0.0045591,0.97294,64.946
    5518 
    5519 > view matrix models
    5520 > #23,0.091613,-0.93753,0.33562,314.94,0.99577,0.088746,-0.023906,11.287,-0.0073722,0.33639,0.9417,-27.665
    5521 
    5522 > view matrix models
    5523 > #23,0.41497,-0.78543,0.45923,193.99,0.8975,0.27054,-0.3483,78.786,0.14932,0.55669,0.81719,-66.573
    5524 
    5525 > view matrix models
    5526 > #23,0.69213,-0.64708,0.31976,147.08,0.45783,0.051106,-0.88757,332.68,0.55799,0.76071,0.33163,-69.756
    5527 
    5528 > view matrix models
    5529 > #23,0.74826,-0.65147,0.12528,182.17,-0.070195,-0.26553,-0.96154,510.67,0.65968,0.71069,-0.24442,53.518
    5530 
    5531 > view matrix models
    5532 > #23,0.78354,-0.62064,0.029525,192.52,-0.16082,-0.24848,-0.95519,525.17,0.60016,0.74369,-0.29451,72.354
    5533 
    5534 > view matrix models
    5535 > #23,0.54918,-0.64975,0.52557,128.6,0.057002,-0.59831,-0.79924,499.74,0.83376,0.46889,-0.29154,67.773
    5536 
    5537 > view matrix models
    5538 > #23,0.43169,-0.4834,0.76156,70.304,0.86117,-0.030324,-0.5074,172.39,0.26837,0.87487,0.4032,-44.75
    5539 
    5540 > view matrix models
    5541 > #23,0.54907,-0.4106,0.72796,42.134,0.77923,-0.063452,-0.62352,222.14,0.30221,0.9096,0.28511,-29.508
    5542 
    5543 > view matrix models
    5544 > #23,0.74024,-0.26901,0.61617,6.0575,0.61721,-0.091537,-0.78145,297.57,0.26662,0.95878,0.098278,14.065
    5545 
    5546 > view matrix models
    5547 > #23,0.94717,-0.088736,0.3082,6.9411,0.27877,-0.24733,-0.92796,427.54,0.15857,0.96486,-0.20953,108.3
    5548 
    5549 > view matrix models
    5550 > #23,0.99778,0.021082,0.063133,36.65,0.066551,-0.33131,-0.94117,488.33,0.0010749,0.94329,-0.33198,173.5
    5551 
    5552 > view matrix models
    5553 > #23,0.89801,-0.10747,0.42666,-7.7937,0.29801,-0.56484,-0.76951,437.46,0.32369,0.81817,-0.4752,160.55
    5554 
    5555 > view matrix models
    5556 > #23,0.63192,-0.15736,0.75889,-23.261,0.54561,-0.6051,-0.57979,347.67,0.55044,0.78044,-0.29652,77.291
    5557 
    5558 > view matrix models
    5559 > #23,0.70143,-0.10438,0.70506,-33.477,0.59235,-0.46477,-0.65811,333.87,0.39638,0.87926,-0.26417,85.611
    5560 
    5561 > view matrix models
    5562 > #23,0.91517,-0.031873,0.4018,-17.706,0.31604,-0.56195,-0.76442,432.07,0.25016,0.82656,-0.50421,181.31
    5563 
    5564 > view matrix models
    5565 > #23,0.99522,-0.089741,-0.038602,79.086,-0.092516,-0.73889,-0.66744,522.59,0.031374,0.66782,-0.74366,309.1
    5566 
    5567 > view matrix models
    5568 > #23,0.92602,-0.033088,0.37602,-13.663,0.017253,-0.9914,-0.12973,413.43,0.37708,0.12662,-0.91748,365.73
    5569 
    5570 > view matrix models
    5571 > #23,0.97969,0.1284,0.15401,1.5461,0.19941,-0.70443,-0.68119,459.74,0.021027,0.69806,-0.71573,299.36
    5572 
    5573 > view matrix models
    5574 > #23,0.9832,0.14284,0.11363,8.0126,0.17943,-0.64221,-0.74523,468.93,-0.033479,0.7531,-0.65705,287.9
    5575 
    5576 > view matrix models
    5577 > #23,0.97987,0.070186,-0.18692,91.397,-0.046034,-0.83153,-0.55357,501.18,-0.19428,0.55102,-0.81156,390.5
    5578 
    5579 > view matrix models
    5580 > #23,0.85566,0.18013,0.48518,-59.401,0.44622,-0.73168,-0.5153,373.72,0.26217,0.65742,-0.70644,253.62
    5581 
    5582 > view matrix models
    5583 > #23,0.87513,0.18714,0.44623,-55.356,0.43844,-0.69685,-0.5676,382.08,0.20473,0.69237,-0.69189,256.43
    5584 
    5585 > ui mousemode right "translate selected models"
    5586 
    5587 > view matrix models
    5588 > #23,0.87513,0.18714,0.44623,-52.579,0.43844,-0.69685,-0.5676,377.89,0.20473,0.69237,-0.69189,260.07
    5589 
    5590 > view matrix models
    5591 > #23,0.87513,0.18714,0.44623,-59.092,0.43844,-0.69685,-0.5676,381.85,0.20473,0.69237,-0.69189,263.99
    5592 
    5593 > view matrix models
    5594 > #23,0.87513,0.18714,0.44623,-59.622,0.43844,-0.69685,-0.5676,383.28,0.20473,0.69237,-0.69189,266.35
    5595 
    5596 > view matrix models
    5597 > #23,0.87513,0.18714,0.44623,-48.224,0.43844,-0.69685,-0.5676,385.76,0.20473,0.69237,-0.69189,263.73
    5598 
    5599 > view matrix models
    5600 > #23,0.87513,0.18714,0.44623,-51.107,0.43844,-0.69685,-0.5676,388.21,0.20473,0.69237,-0.69189,264.26
    5601 
    5602 > view matrix models
    5603 > #23,0.87513,0.18714,0.44623,-52.087,0.43844,-0.69685,-0.5676,389.62,0.20473,0.69237,-0.69189,266.74
    5604 
    5605 > ui mousemode right "rotate selected models"
    5606 
    5607 > view matrix models
    5608 > #23,0.95986,0.044769,0.27687,-6.5442,0.27371,-0.3649,-0.88991,446.32,0.06119,0.92997,-0.36251,180.12
    5609 
    5610 > ui mousemode right "translate selected models"
    5611 
    5612 > view matrix models
    5613 > #23,0.95986,0.044769,0.27687,-2.0721,0.27371,-0.3649,-0.88991,434.52,0.06119,0.92997,-0.36251,172.74
    5614 
    5615 > view matrix models
    5616 > #23,0.95986,0.044769,0.27687,2.3532,0.27371,-0.3649,-0.88991,431.35,0.06119,0.92997,-0.36251,172.47
    5617 
    5618 > view matrix models
    5619 > #23,0.95986,0.044769,0.27687,1.4998,0.27371,-0.3649,-0.88991,432.41,0.06119,0.92997,-0.36251,170.05
    5620 
    5621 > view matrix models
    5622 > #23,0.95986,0.044769,0.27687,3.1717,0.27371,-0.3649,-0.88991,433.48,0.06119,0.92997,-0.36251,167.63
    5623 
    5624 > view matrix models
    5625 > #23,0.95986,0.044769,0.27687,3.3564,0.27371,-0.3649,-0.88991,434.7,0.06119,0.92997,-0.36251,166.83
    5626 
    5627 > view matrix models
    5628 > #23,0.95986,0.044769,0.27687,1.7153,0.27371,-0.3649,-0.88991,433.52,0.06119,0.92997,-0.36251,167.82
    5629 
    5630 > view matrix models
    5631 > #23,0.95986,0.044769,0.27687,2.2868,0.27371,-0.3649,-0.88991,432.23,0.06119,0.92997,-0.36251,167.68
    5632 
    5633 > hide #!1 models
    5634 
    5635 > show #!1 models
    5636 
    5637 > hide #!1 models
    5638 
    5639 > select #21/D:358
    5640 
    5641 22 atoms, 24 bonds, 1 residue, 1 model selected 
    5642 
    5643 > select add #21/D:357
    5644 
    5645 42 atoms, 45 bonds, 2 residues, 1 model selected 
    5646 
    5647 > select add #21/D:356
    5648 
    5649 62 atoms, 66 bonds, 3 residues, 1 model selected 
    5650 
    5651 > select add #21/D:424
    5652 
    5653 84 atoms, 90 bonds, 4 residues, 1 model selected 
    5654 
    5655 > select add #21/D:423
    5656 
    5657 104 atoms, 111 bonds, 5 residues, 1 model selected 
    5658 
    5659 > select add #21/D:422
    5660 
    5661 124 atoms, 132 bonds, 6 residues, 1 model selected 
    5662 
    5663 > select add #21/D:421
    5664 
    5665 144 atoms, 153 bonds, 7 residues, 1 model selected 
    5666 
    5667 > select add #21/D:420
    5668 
    5669 167 atoms, 178 bonds, 8 residues, 1 model selected 
    5670 
    5671 > select add #21/C:419
    5672 
    5673 187 atoms, 199 bonds, 9 residues, 1 model selected 
    5674 
    5675 > delete atoms sel
    5676 
    5677 > delete bonds sel
    5678 
    5679 > open
    5680 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_2024_07_21_21_09/fold_2024_07_21_21_09_model_0.cif
    5681 
    5682 Chain information for fold_2024_07_21_21_09_model_0.cif #25 
    5683 --- 
    5684 Chain | Description 
    5685 A | . 
    5686  
    5687 
    5688 > open
    5689 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_2024_07_21_21_09/fold_2024_07_21_21_09_model_1.cif
    5690 
    5691 Chain information for fold_2024_07_21_21_09_model_1.cif #26 
    5692 --- 
    5693 Chain | Description 
    5694 A | . 
    5695  
    5696 
    5697 > open
    5698 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_2024_07_21_21_09/fold_2024_07_21_21_09_model_2.cif
    5699 
    5700 Chain information for fold_2024_07_21_21_09_model_2.cif #27 
    5701 --- 
    5702 Chain | Description 
    5703 A | . 
    5704  
    5705 
    5706 > open
    5707 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_2024_07_21_21_09/fold_2024_07_21_21_09_model_4.cif
    5708 
    5709 Chain information for fold_2024_07_21_21_09_model_4.cif #28 
    5710 --- 
    5711 Chain | Description 
    5712 A | . 
    5713  
    5714 
    5715 > open
    5716 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_2024_07_21_21_09/fold_2024_07_21_21_09_model_3.cif
    5717 
    5718 Chain information for fold_2024_07_21_21_09_model_3.cif #29 
    5719 --- 
    5720 Chain | Description 
    5721 A | . 
    5722  
    5723 
    5724 > hide #26 models
    5725 
    5726 > hide #27 models
    5727 
    5728 > hide #28 models
    5729 
    5730 > hide #29 models
    5731 
    5732 > select clear
    5733 
    5734 > select #25/A:1@P
    5735 
    5736 1 atom, 1 residue, 1 model selected 
    5737 
    5738 > select clear
    5739 
    5740 > select #25/A:9@O3'
    5741 
    5742 1 atom, 1 residue, 1 model selected 
    5743 
    5744 > select up
    5745 
    5746 20 atoms, 21 bonds, 1 residue, 1 model selected 
    5747 
    5748 > select up
    5749 
    5750 212 atoms, 236 bonds, 10 residues, 1 model selected 
    5751 
    5752 > cartoon sel
    5753 
    5754 > view matrix models #25,1,0,0,64.557,0,1,0,-64.617,0,0,1,161.57
    5755 
    5756 > view matrix models #25,1,0,0,173.71,0,1,0,35.303,0,0,1,326.95
    5757 
    5758 > view matrix models #25,1,0,0,208.82,0,1,0,208.9,0,0,1,226.84
    5759 
    5760 > view matrix models #25,1,0,0,213.09,0,1,0,222.37,0,0,1,231.01
    5761 
    5762 > view matrix models #25,1,0,0,203.01,0,1,0,223.96,0,0,1,263.21
    5763 
    5764 > ui mousemode right "rotate selected models"
    5765 
    5766 > view matrix models
    5767 > #25,-0.27395,0.93532,0.22387,204.65,-0.91631,-0.32454,0.23461,223.99,0.29209,-0.14087,0.94596,262.9
    5768 
    5769 > view matrix models
    5770 > #25,-0.26501,-0.17714,0.94784,204.37,0.63373,-0.77286,0.032749,222.5,0.72675,0.60935,0.31707,262.68
    5771 
    5772 > view matrix models
    5773 > #25,-0.26097,0.83896,0.47753,204.66,0.92795,0.081654,0.36366,222.91,0.2661,0.53803,-0.79982,262.4
    5774 
    5775 > view matrix models
    5776 > #25,-0.64683,0.60528,0.46395,204.79,0.68261,0.1882,0.70613,223.3,0.34009,0.77345,-0.5349,262.6
    5777 
    5778 > view matrix models
    5779 > #25,-0.69278,0.31541,0.64852,204.73,0.65466,-0.1021,0.749,223.15,0.30245,0.94345,-0.13575,262.92
    5780 
    5781 > ui mousemode right "translate selected models"
    5782 
    5783 > view matrix models
    5784 > #25,-0.69278,0.31541,0.64852,188.08,0.65466,-0.1021,0.749,243.74,0.30245,0.94345,-0.13575,260.43
    5785 
    5786 > view matrix models
    5787 > #25,-0.69278,0.31541,0.64852,187.38,0.65466,-0.1021,0.749,246.23,0.30245,0.94345,-0.13575,257.9
    5788 
    5789 > show #!1 models
    5790 
    5791 > view matrix models
    5792 > #25,-0.69278,0.31541,0.64852,190.37,0.65466,-0.1021,0.749,250.16,0.30245,0.94345,-0.13575,262.36
    5793 
    5794 > view matrix models
    5795 > #25,-0.69278,0.31541,0.64852,191.51,0.65466,-0.1021,0.749,247.4,0.30245,0.94345,-0.13575,260.36
    5796 
    5797 > view matrix models
    5798 > #25,-0.69278,0.31541,0.64852,192.24,0.65466,-0.1021,0.749,247.09,0.30245,0.94345,-0.13575,260.11
    5799 
    5800 > view matrix models
    5801 > #25,-0.69278,0.31541,0.64852,193.2,0.65466,-0.1021,0.749,249.62,0.30245,0.94345,-0.13575,261.55
    5802 
    5803 > ui mousemode right "rotate selected models"
    5804 
    5805 > view matrix models
    5806 > #25,-0.79171,0.077526,0.60596,193.09,0.59628,-0.11762,0.79411,249.67,0.13283,0.99003,0.04689,261.8
    5807 
    5808 > view matrix models
    5809 > #25,-0.78864,-0.19178,0.58418,192.88,0.6111,-0.13962,0.77914,249.66,-0.067854,0.97146,0.22731,262.04
    5810 
    5811 > view matrix models
    5812 > #25,-0.76102,0.10571,0.64006,193.08,0.6225,-0.1587,0.76636,249.63,0.18258,0.98165,0.054969,261.76
    5813 
    5814 > view matrix models
    5815 > #25,-0.78212,0.08148,0.61778,193.07,0.60126,-0.16171,0.78252,249.66,0.16366,0.98347,0.077484,261.79
    5816 
    5817 > hide #!21 models
    5818 
    5819 > hide #22 models
    5820 
    5821 > hide #23 models
    5822 
    5823 > hide #25 models
    5824 
    5825 > show #25 models
    5826 
    5827 > fitmap #25 inMap #1
    5828 
    5829 Fit molecule fold_2024_07_21_21_09_model_0.cif (#25) to map
    5830 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 212 atoms 
    5831 average map value = 4.666, steps = 376 
    5832 shifted from previous position = 2.92 
    5833 rotated from previous position = 43.1 degrees 
    5834 atoms outside contour = 10, contour level = 0.94917 
    5835  
    5836 Position of fold_2024_07_21_21_09_model_0.cif (#25) relative to
    5837 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    5838 Matrix rotation and translation 
    5839 -0.97931188 0.18595263 -0.07981134 190.97410893 
    5840 -0.07992567 0.00689399 0.99677698 248.57100386 
    5841 0.18590352 0.98253452 0.00811102 261.73519212 
    5842 Axis -0.03786249 -0.70638249 -0.70681696 
    5843 Axis point 87.72181431 -18.38563361 0.00000000 
    5844 Rotation angle (degrees) 169.15915977 
    5845 Shift along axis -367.81583137 
    5846  
    5847 
    5848 > show #26 models
    5849 
    5850 > hide #25 models
    5851 
    5852 > hide #!1 models
    5853 
    5854 > show #27 models
    5855 
    5856 > hide #26 models
    5857 
    5858 > select add #26
    5859 
    5860 424 atoms, 472 bonds, 20 residues, 2 models selected 
    5861 
    5862 > select subtract #26
    5863 
    5864 212 atoms, 236 bonds, 10 residues, 1 model selected 
    5865 
    5866 > hide #27 models
    5867 
    5868 > show #28 models
    5869 
    5870 > show #29 models
    5871 
    5872 > hide #28 models
    5873 
    5874 > show #25 models
    5875 
    5876 > hide #29 models
    5877 
    5878 > close #26-29
    5879 
    5880 > show #!1 models
    5881 
    5882 > open
    5883 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_2024_07_21_21_10/fold_2024_07_21_21_10_model_0.cif
    5884 
    5885 Chain information for fold_2024_07_21_21_10_model_0.cif #26 
    5886 --- 
    5887 Chain | Description 
    5888 A | . 
    5889  
    5890 
    5891 > show #!21 models
    5892 
    5893 > show #22 models
    5894 
    5895 > show #23 models
    5896 
    5897 > select clear
    5898 
    5899 > select #26/A:5
    5900 
    5901 20 atoms, 21 bonds, 1 residue, 1 model selected 
    5902 
    5903 > ui mousemode right "translate selected models"
    5904 
    5905 > view matrix models #26,1,0,0,-37.406,0,1,0,-37.558,0,0,1,166.04
    5906 
    5907 > view matrix models #26,1,0,0,159.04,0,1,0,158.57,0,0,1,370.15
    5908 
    5909 > view matrix models #26,1,0,0,229.41,0,1,0,232.87,0,0,1,333.76
    5910 
    5911 > view matrix models #26,1,0,0,209.95,0,1,0,253.76,0,0,1,260.35
    5912 
    5913 > view matrix models #26,1,0,0,156.66,0,1,0,242.37,0,0,1,248.09
    5914 
    5915 > view matrix models #26,1,0,0,173.19,0,1,0,234.27,0,0,1,275.46
    5916 
    5917 > hide #!1 models
    5918 
    5919 > ui mousemode right "translate selected models"
    5920 
    5921 > view matrix models #26,1,0,0,183.85,0,1,0,203.59,0,0,1,282.37
    5922 
    5923 > select clear
    5924 
    5925 > select #25/A:2
    5926 
    5927 22 atoms, 24 bonds, 1 residue, 1 model selected 
    5928 
    5929 > select #25/A:1
    5930 
    5931 23 atoms, 25 bonds, 1 residue, 1 model selected 
    5932 
    5933 > show #!1 models
    5934 
    5935 > ui mousemode right "translate selected atoms"
    5936 
    5937 > hide #!1 models
    5938 
    5939 > select #26/A:5
    5940 
    5941 20 atoms, 21 bonds, 1 residue, 1 model selected 
    5942 
    5943 > ui mousemode right "rotate selected models"
    5944 
    5945 > view matrix models
    5946 > #26,-0.11652,0.935,0.33496,190.83,-0.99158,-0.12873,0.014379,210,0.056562,-0.33046,0.94212,281.94
    5947 
    5948 > view matrix models
    5949 > #26,-0.31075,0.31654,0.89624,193.52,-0.78516,-0.61691,-0.054352,208.87,0.53569,-0.72057,0.44023,278.21
    5950 
    5951 > view matrix models
    5952 > #26,0.57188,0.47292,0.6703,188.23,-0.62064,-0.28489,0.73051,210.12,0.53643,-0.83378,0.13059,277.33
    5953 
    5954 > view matrix models
    5955 > #26,0.84584,0.50725,0.16507,185.62,-0.20766,0.028069,0.9778,208.23,0.49136,-0.86134,0.12908,277.59
    5956 
    5957 > view matrix models
    5958 > #26,0.30803,0.75296,0.58153,189.5,-0.53412,-0.36896,0.76065,209.67,0.7873,-0.54491,0.28851,276.17
    5959 
    5960 > view matrix models
    5961 > #26,-0.12492,-0.73172,-0.67006,188.84,0.67588,-0.55717,0.48244,202.44,-0.72635,-0.39261,0.56416,285.02
    5962 
    5963 > view matrix models
    5964 > #26,-0.17632,-0.96465,-0.19585,189.9,0.71347,-0.26232,0.64973,202.64,-0.67814,-0.025171,0.7345,285.19
    5965 
    5966 > ui mousemode right "translate selected models"
    5967 
    5968 > view matrix models
    5969 > #26,-0.17632,-0.96465,-0.19585,190.5,0.71347,-0.26232,0.64973,216.45,-0.67814,-0.025171,0.7345,275.07
    5970 
    5971 > show #!1 models
    5972 
    5973 > ui mousemode right "rotate selected models"
    5974 
    5975 > view matrix models
    5976 > #26,-0.39399,-0.46744,-0.79137,190.57,0.39214,-0.86421,0.31523,217.68,-0.83126,-0.18613,0.5238,275.41
    5977 
    5978 > view matrix models
    5979 > #26,-0.84595,-0.51947,0.12054,194.74,0.46799,-0.61482,0.63481,217.73,-0.25565,0.59342,0.76321,272.58
    5980 
    5981 > view matrix models
    5982 > #26,-0.99321,0.10117,0.057374,195.41,-0.020166,-0.63565,0.77172,220.84,0.11454,0.76532,0.63337,270.16
    5983 
    5984 > view matrix models
    5985 > #26,-0.73326,-0.16056,0.66072,195.55,0.61753,-0.56395,0.54828,217.07,0.28458,0.81005,0.51268,269.01
    5986 
    5987 > view matrix models
    5988 > #26,-0.64925,-0.043176,0.75935,195.3,0.35278,-0.90159,0.25037,217.86,0.67381,0.43043,0.60059,267.1
    5989 
    5990 > view matrix models
    5991 > #26,-0.8268,0.44906,0.33875,195.3,-0.19655,-0.7949,0.57402,221.18,0.52704,0.40802,0.74548,268.1
    5992 
    5993 > view matrix models
    5994 > #26,-0.88067,0.47334,0.019463,194.84,-0.39064,-0.74882,0.53541,222.06,0.268,0.46391,0.84437,269.61
    5995 
    5996 > view matrix models
    5997 > #26,-0.96238,0.27171,0.0029237,195.16,-0.23479,-0.83695,0.49436,221.12,0.13677,0.47507,0.86925,270.36
    5998 
    5999 > view matrix models
    6000 > #26,-0.86966,-0.48339,-0.1001,194.17,0.41953,-0.8306,0.36619,217.05,-0.26015,0.27647,0.92514,272.75
    6001 
    6002 > view matrix models
    6003 > #26,-0.94633,-0.318,0.057773,195.07,0.29752,-0.78724,0.54013,218.04,-0.12628,0.52833,0.8396,271.77
    6004 
    6005 > view matrix models
    6006 > #26,-0.81961,-0.54061,0.1897,194.64,0.55483,-0.66639,0.49809,216.47,-0.14286,0.51349,0.84612,271.88
    6007 
    6008 > ui mousemode right "translate selected models"
    6009 
    6010 > view matrix models
    6011 > #26,-0.81961,-0.54061,0.1897,191.94,0.55483,-0.66639,0.49809,223.15,-0.14286,0.51349,0.84612,269.81
    6012 
    6013 > view matrix models
    6014 > #26,-0.81961,-0.54061,0.1897,192.21,0.55483,-0.66639,0.49809,222.47,-0.14286,0.51349,0.84612,269.27
    6015 
    6016 > view matrix models
    6017 > #26,-0.81961,-0.54061,0.1897,193.99,0.55483,-0.66639,0.49809,223.84,-0.14286,0.51349,0.84612,265.89
    6018 
    6019 > ui mousemode right "rotate selected models"
    6020 
    6021 > view matrix models
    6022 > #26,-0.76479,-0.14731,0.62721,194.87,0.62368,-0.41347,0.66337,223.94,0.16161,0.89852,0.4081,263.4
    6023 
    6024 > view matrix models
    6025 > #26,-0.48971,-0.67165,0.55595,193.06,0.85148,-0.23128,0.47062,222.46,-0.18752,0.70385,0.68515,265.68
    6026 
    6027 > view matrix models
    6028 > #26,-0.48121,-0.66664,0.56924,193.04,0.85729,-0.22232,0.46436,222.41,-0.18301,0.71146,0.67848,265.64
    6029 
    6030 > ui mousemode right "translate selected models"
    6031 
    6032 > view matrix models
    6033 > #26,-0.48121,-0.66664,0.56924,195.4,0.85729,-0.22232,0.46436,227.71,-0.18301,0.71146,0.67848,269.94
    6034 
    6035 > hide #!1 models
    6036 
    6037 > volume #1 level 1.506
    6038 
    6039 > volume #1 level 3.557
    6040 
    6041 > select #1
    6042 
    6043 3 models selected 
    6044 
    6045 > select clear
    6046 
    6047 > ui mousemode right "rotate selected models"
    6048 
    6049 > view matrix models
    6050 > #25,-0.97676,-0.13681,0.16498,191.44,0.15603,0.073839,0.98499,248.35,-0.14694,0.98784,-0.050776,261.9
    6051 
    6052 > view matrix models
    6053 > #25,-0.9034,-0.18653,-0.3861,190.2,-0.33668,-0.24904,0.90809,248.71,-0.26555,0.95036,0.16218,262.35
    6054 
    6055 > view matrix models
    6056 > #25,-0.99773,0.066771,-0.008197,191.01,-0.036445,-0.43408,0.90014,248.45,0.056545,0.8984,0.43553,262.5
    6057 
    6058 > view matrix models
    6059 > #25,-0.95972,-0.12829,0.24997,191.34,0.27945,-0.5281,0.80189,247.95,0.029132,0.83944,0.54268,262.68
    6060 
    6061 > view matrix models
    6062 > #25,-0.52345,0.3031,0.79632,191.93,0.65306,-0.45756,0.60344,247.26,0.54727,0.83592,0.041571,261.28
    6063 
    6064 > view matrix models
    6065 > #25,-0.79373,0.56554,0.22395,191.16,0.34322,0.11244,0.9325,248.14,0.50218,0.81702,-0.28336,260.75
    6066 
    6067 > view matrix models
    6068 > #25,-0.85376,0.40252,0.33026,191.42,0.37326,0.030943,0.92721,248.11,0.363,0.91489,-0.17666,261.05
    6069 
    6070 > view matrix models
    6071 > #25,-0.81858,0.0031126,0.57439,191.82,0.56315,-0.19259,0.8036,247.74,0.11312,0.98128,0.15589,261.84
    6072 
    6073 > ui mousemode right "translate selected models"
    6074 
    6075 > view matrix models
    6076 > #25,-0.81858,0.0031126,0.57439,192.52,0.56315,-0.19259,0.8036,251.26,0.11312,0.98128,0.15589,258.77
    6077 
    6078 > view matrix models
    6079 > #25,-0.81858,0.0031126,0.57439,193.99,0.56315,-0.19259,0.8036,251.53,0.11312,0.98128,0.15589,261.4
    6080 
    6081 > ui mousemode right "rotate selected models"
    6082 
    6083 > view matrix models
    6084 > #25,-0.77913,-0.50655,0.36927,193.5,0.52316,-0.2009,0.82822,251.64,-0.34535,0.83848,0.42154,262.23
    6085 
    6086 > view matrix models
    6087 > #25,-0.97685,-0.041036,0.20996,193.59,0.19372,-0.58608,0.78675,251.76,0.090766,0.80921,0.58046,262.06
    6088 
    6089 > view matrix models
    6090 > #25,-0.96562,0.053265,0.25445,193.7,0.16814,-0.61852,0.76757,251.73,0.19827,0.78396,0.5883,261.97
    6091 
    6092 > ui mousemode right "translate selected models"
    6093 
    6094 > view matrix models
    6095 > #25,-0.96562,0.053265,0.25445,192.56,0.16814,-0.61852,0.76757,251.61,0.19827,0.78396,0.5883,259.88
    6096 
    6097 > view matrix models
    6098 > #25,-0.96562,0.053265,0.25445,192.83,0.16814,-0.61852,0.76757,250.44,0.19827,0.78396,0.5883,259.05
    6099 
    6100 > view matrix models
    6101 > #25,-0.96562,0.053265,0.25445,193.04,0.16814,-0.61852,0.76757,251.37,0.19827,0.78396,0.5883,259.49
    6102 
    6103 > view matrix models
    6104 > #25,-0.96562,0.053265,0.25445,193.69,0.16814,-0.61852,0.76757,251.62,0.19827,0.78396,0.5883,257.76
    6105 
    6106 > view matrix models
    6107 > #25,-0.96562,0.053265,0.25445,193.94,0.16814,-0.61852,0.76757,250.58,0.19827,0.78396,0.5883,258.25
    6108 
    6109 > view matrix models
    6110 > #25,-0.96562,0.053265,0.25445,194.69,0.16814,-0.61852,0.76757,252.47,0.19827,0.78396,0.5883,258.82
    6111 
    6112 > fitmap #25 inMap #1
    6113 
    6114 Fit molecule fold_2024_07_21_21_09_model_0.cif (#25) to map
    6115 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 212 atoms 
    6116 average map value = 4.576, steps = 104 
    6117 shifted from previous position = 7.55 
    6118 rotated from previous position = 43.3 degrees 
    6119 atoms outside contour = 45, contour level = 3.557 
    6120  
    6121 Position of fold_2024_07_21_21_09_model_0.cif (#25) relative to
    6122 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    6123 Matrix rotation and translation 
    6124 -0.98432059 0.13602780 -0.11229159 191.16442984 
    6125 -0.10998039 0.02441243 0.99363390 248.46172903 
    6126 0.13790315 0.99040419 -0.00906927 262.57396809 
    6127 Axis -0.00920420 -0.71301718 -0.70108615 
    6128 Axis point 93.47780006 0.00000000 20.77934306 
    6129 Rotation angle (degrees) 169.89527540 
    6130 Shift along axis -363.00396800 
    6131  
    6132 
    6133 > select #26/A:10
    6134 
    6135 22 atoms, 24 bonds, 1 residue, 1 model selected 
    6136 
    6137 > ui mousemode right "rotate selected models"
    6138 
    6139 > view matrix models
    6140 > #26,0.25803,0.53856,0.80211,191.36,0.60262,0.55921,-0.56933,226.49,-0.75516,0.63027,-0.18025,270.83
    6141 
    6142 > view matrix models
    6143 > #26,-0.33711,0.26732,0.90271,194.95,0.32707,0.93237,-0.15396,229.12,-0.88282,0.24335,-0.40175,270.92
    6144 
    6145 > view matrix models
    6146 > #26,0.49335,0.59994,0.62982,189.79,0.44292,0.4499,-0.77551,226.83,-0.74861,0.66156,-0.04377,271.16
    6147 
    6148 > ui mousemode right "translate selected models"
    6149 
    6150 > view matrix models
    6151 > #26,0.49335,0.59994,0.62982,188.47,0.44292,0.4499,-0.77551,218.01,-0.74861,0.66156,-0.04377,303.78
    6152 
    6153 > view matrix models
    6154 > #26,0.49335,0.59994,0.62982,188.44,0.44292,0.4499,-0.77551,220.09,-0.74861,0.66156,-0.04377,303.7
    6155 
    6156 > ui mousemode right "rotate selected models"
    6157 
    6158 > view matrix models
    6159 > #26,0.47287,0.5999,0.64538,188.58,0.76656,0.081105,-0.63704,218.64,-0.4345,0.79596,-0.4215,301.35
    6160 
    6161 > view matrix models
    6162 > #26,0.48303,0.59864,0.639,188.51,0.63651,0.26108,-0.72574,219.18,-0.60129,0.75727,-0.25493,302.49
    6163 
    6164 > ui mousemode right "translate selected models"
    6165 
    6166 > view matrix models
    6167 > #26,0.48303,0.59864,0.639,189.06,0.63651,0.26108,-0.72574,222.71,-0.60129,0.75727,-0.25493,307.2
    6168 
    6169 > view matrix models
    6170 > #26,0.48303,0.59864,0.639,189.71,0.63651,0.26108,-0.72574,222.74,-0.60129,0.75727,-0.25493,303.03
    6171 
    6172 > fitmap #26 inMap #1
    6173 
    6174 Fit molecule fold_2024_07_21_21_10_model_0.cif (#26) to map
    6175 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 427 atoms 
    6176 average map value = 4.518, steps = 84 
    6177 shifted from previous position = 4.9 
    6178 rotated from previous position = 8.37 degrees 
    6179 atoms outside contour = 105, contour level = 3.557 
    6180  
    6181 Position of fold_2024_07_21_21_10_model_0.cif (#26) relative to
    6182 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    6183 Matrix rotation and translation 
    6184 0.37058142 0.67734900 0.63550588 193.69845121 
    6185 0.62409918 0.32514254 -0.71048050 223.50404389 
    6186 -0.68787326 0.65990957 -0.30224117 306.41714073 
    6187 Axis 0.71905664 0.69438956 -0.02794069 
    6188 Axis point 0.00000000 -141.62680560 169.66518304 
    6189 Rotation angle (degrees) 107.65342815 
    6190 Shift along axis 285.91752733 
    6191  
    6192 
    6193 > hide #!1 models
    6194 
    6195 > show #!1 models
    6196 
    6197 > hide #25 models
    6198 
    6199 > show #25 models
    6200 
    6201 > hide #26 models
    6202 
    6203 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/R_249-277.pdb
    6204 
    6205 Chain information for R_249-277.pdb #27 
    6206 --- 
    6207 Chain | Description 
    6208 A | No description available 
    6209  
    6210 
    6211 > select #27/A:263
    6212 
    6213 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6214 
    6215 > view matrix models #27,1,0,0,33.626,0,1,0,-40.8,0,0,1,166.07
    6216 
    6217 > view matrix models #27,1,0,0,33.952,0,1,0,-41.19,0,0,1,167.96
    6218 
    6219 > ui mousemode right "rotate selected models"
    6220 
    6221 > view matrix models
    6222 > #27,0.99994,-0.010064,0.0050354,35.923,0.010045,0.99994,0.0037776,-43.26,-0.0050732,-0.0037268,0.99998,169.74
    6223 
    6224 > view matrix models
    6225 > #27,0.45904,-0.80262,0.38089,277.17,0.4917,0.5866,0.64353,-97.842,-0.73994,-0.10812,0.66393,358.27
    6226 
    6227 > view matrix models
    6228 > #27,-0.28866,-0.75727,0.58585,352.41,0.030826,0.60423,0.79621,-52.396,-0.95693,0.2479,-0.15107,411.67
    6229 
    6230 > view matrix models
    6231 > #27,-0.11036,-0.74334,0.65975,310.68,0.16723,0.64045,0.74957,-76.621,-0.97972,0.19305,0.053628,401.09
    6232 
    6233 > view matrix models
    6234 > #27,-0.50779,-0.71375,-0.48241,524.23,-0.51136,-0.20093,0.83555,239.38,-0.6933,0.67097,-0.26295,274.41
    6235 
    6236 > view matrix models
    6237 > #27,-0.34833,-0.49932,-0.79332,486.11,-0.72387,-0.39442,0.56608,361.2,-0.59555,0.77144,-0.22405,227.23
    6238 
    6239 > view matrix models
    6240 > #27,-0.33386,-0.51262,-0.79105,487.07,-0.74233,-0.37422,0.5558,360.15,-0.58094,0.77278,-0.25559,229.02
    6241 
    6242 > ui mousemode right "translate selected models"
    6243 
    6244 > view matrix models
    6245 > #27,-0.33386,-0.51262,-0.79105,486.25,-0.74233,-0.37422,0.5558,360.05,-0.58094,0.77278,-0.25559,222.96
    6246 
    6247 > view matrix models
    6248 > #27,-0.33386,-0.51262,-0.79105,494.09,-0.74233,-0.37422,0.5558,360.65,-0.58094,0.77278,-0.25559,226.82
    6249 
    6250 > view matrix models
    6251 > #27,-0.33386,-0.51262,-0.79105,494.11,-0.74233,-0.37422,0.5558,360.96,-0.58094,0.77278,-0.25559,222.08
    6252 
    6253 > view matrix models
    6254 > #27,-0.33386,-0.51262,-0.79105,493.43,-0.74233,-0.37422,0.5558,361.76,-0.58094,0.77278,-0.25559,220.49
    6255 
    6256 > fitmap #27 inMap #1
    6257 
    6258 Fit molecule R_249-277.pdb (#27) to map
    6259 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 608 atoms 
    6260 average map value = 4.13, steps = 92 
    6261 shifted from previous position = 4.84 
    6262 rotated from previous position = 17.1 degrees 
    6263 atoms outside contour = 199, contour level = 3.557 
    6264  
    6265 Position of R_249-277.pdb (#27) relative to
    6266 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    6267 Matrix rotation and translation 
    6268 -0.46057988 -0.27024761 -0.84547762 459.39257301 
    6269 -0.69965708 -0.47561654 0.53316871 386.07093887 
    6270 -0.54621071 0.83711119 0.02997876 154.74498674 
    6271 Axis 0.50217219 -0.49444724 -0.70946812 
    6272 Axis point 322.84166167 85.10951128 0.00000000 
    6273 Rotation angle (degrees) 162.38449968 
    6274 Shift along axis -69.98417098 
    6275  
    6276 
    6277 > hide #!1 models
    6278 
    6279 > show #!1 models
    6280 
    6281 > hide #!1 models
    6282 
    6283 > hide #27 models
    6284 
    6285 Drag select of 285 atoms, 316 bonds, 20 residues 
    6286 
    6287 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-224-240.pdb
    6288 
    6289 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-224-240.pdb models #21
    6290 > selectedOnly true relModel #21
    6291 
    6292 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-224-240.pdb
    6293 
    6294 Chain information for R-224-240.pdb #28 
    6295 --- 
    6296 Chain | Description 
    6297 A | No description available 
    6298 C | No description available 
    6299  
    6300 
    6301 > select #28/A:232
    6302 
    6303 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6304 
    6305 > show #!1 models
    6306 
    6307 > view matrix models #28,1,0,0,-49.776,0,1,0,76.128,0,0,1,33.139
    6308 
    6309 > ui mousemode right "rotate selected models"
    6310 
    6311 > view matrix models
    6312 > #28,0.18853,-0.60536,0.7733,-14.697,-0.70458,0.46515,0.53591,141.78,-0.68412,-0.64589,-0.33884,577.93
    6313 
    6314 > view matrix models
    6315 > #28,0.21861,-0.87425,0.43346,102.71,-0.76754,0.12024,0.62962,178.57,-0.60256,-0.47034,-0.64474,614.76
    6316 
    6317 > view matrix models
    6318 > #28,0.4886,-0.87251,0.0015015,162.73,-0.50988,-0.28413,0.81197,146.05,-0.70802,-0.39749,-0.5837,607.6
    6319 
    6320 > view matrix models
    6321 > #28,0.58621,-0.75345,0.29777,55.111,-0.55541,-0.10617,0.82477,125.5,-0.58981,-0.64888,-0.48071,597.11
    6322 
    6323 > select clear
    6324 
    6325 > select #28/C:320
    6326 
    6327 22 atoms, 24 bonds, 1 residue, 1 model selected 
    6328 
    6329 > select up
    6330 
    6331 44 atoms, 49 bonds, 2 residues, 1 model selected 
    6332 
    6333 > delete atoms sel
    6334 
    6335 > delete bonds sel
    6336 
    6337 > select #28/A:233
    6338 
    6339 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6340 
    6341 > ui mousemode right "translate selected models"
    6342 
    6343 > view matrix models
    6344 > #28,0.58621,-0.75345,0.29777,104.55,-0.55541,-0.10617,0.82477,128.85,-0.58981,-0.64888,-0.48071,619.94
    6345 
    6346 > view matrix models
    6347 > #28,0.58621,-0.75345,0.29777,111.45,-0.55541,-0.10617,0.82477,160.97,-0.58981,-0.64888,-0.48071,586.9
    6348 
    6349 > view matrix models
    6350 > #28,0.58621,-0.75345,0.29777,110.32,-0.55541,-0.10617,0.82477,162.91,-0.58981,-0.64888,-0.48071,588.98
    6351 
    6352 > fitmap #28 inMap #1
    6353 
    6354 Fit molecule R-224-240.pdb (#28) to map
    6355 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 388 atoms 
    6356 average map value = 4.51, steps = 120 
    6357 shifted from previous position = 4.48 
    6358 rotated from previous position = 66.2 degrees 
    6359 atoms outside contour = 79, contour level = 3.557 
    6360  
    6361 Position of R-224-240.pdb (#28) relative to
    6362 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    6363 Matrix rotation and translation 
    6364 0.61024285 -0.35258228 -0.70942892 298.94537643 
    6365 0.31792600 -0.71123189 0.62695475 148.33838204 
    6366 -0.72562161 -0.60814056 -0.32192910 568.42099088 
    6367 Axis -0.87878675 0.01152131 0.47707557 
    6368 Axis point 0.00000000 207.78787262 330.72902833 
    6369 Rotation angle (degrees) 135.35375367 
    6370 Shift along axis 10.17958437 
    6371  
    6372 
    6373 > show #27 models
    6374 
    6375 > hide #!1 models
    6376 
    6377 > show #!1 models
    6378 
    6379 > hide #!1 models
    6380 
    6381 > select #21/B:32
    6382 
    6383 22 atoms, 24 bonds, 1 residue, 1 model selected 
    6384 
    6385 > select add #21/B:33
    6386 
    6387 45 atoms, 49 bonds, 2 residues, 1 model selected 
    6388 
    6389 > select add #21/B:34
    6390 
    6391 68 atoms, 74 bonds, 3 residues, 1 model selected 
    6392 
    6393 > select add #21/B:35
    6394 
    6395 88 atoms, 95 bonds, 4 residues, 1 model selected 
    6396 
    6397 > select add #21/B:57
    6398 
    6399 111 atoms, 120 bonds, 5 residues, 1 model selected 
    6400 
    6401 > select add #21/B:56
    6402 
    6403 133 atoms, 144 bonds, 6 residues, 1 model selected 
    6404 
    6405 > select add #21/B:55
    6406 
    6407 153 atoms, 165 bonds, 7 residues, 1 model selected 
    6408 
    6409 > select add #21/B:54
    6410 
    6411 175 atoms, 189 bonds, 8 residues, 1 model selected 
    6412 
    6413 > select add #21/B:53
    6414 
    6415 198 atoms, 214 bonds, 9 residues, 1 model selected 
    6416 
    6417 > select add #21/B:52
    6418 
    6419 218 atoms, 235 bonds, 10 residues, 1 model selected 
    6420 
    6421 > select add #21/B:51
    6422 
    6423 238 atoms, 256 bonds, 11 residues, 1 model selected 
    6424 
    6425 > select add #21/B:50
    6426 
    6427 258 atoms, 277 bonds, 12 residues, 1 model selected 
    6428 
    6429 > select add #21/B:49
    6430 
    6431 280 atoms, 301 bonds, 13 residues, 1 model selected 
    6432 
    6433 > select add #21/B:48
    6434 
    6435 302 atoms, 325 bonds, 14 residues, 1 model selected 
    6436 
    6437 > select add #21/B:47
    6438 
    6439 324 atoms, 349 bonds, 15 residues, 1 model selected 
    6440 
    6441 > select add #21/B:46
    6442 
    6443 347 atoms, 374 bonds, 16 residues, 1 model selected 
    6444 
    6445 > select add #21/B:45
    6446 
    6447 369 atoms, 398 bonds, 17 residues, 1 model selected 
    6448 
    6449 > select add #21/B:44
    6450 
    6451 392 atoms, 423 bonds, 18 residues, 1 model selected 
    6452 
    6453 > select add #21/B:43
    6454 
    6455 412 atoms, 444 bonds, 19 residues, 1 model selected 
    6456 
    6457 > select add #21/B:42
    6458 
    6459 435 atoms, 469 bonds, 20 residues, 1 model selected 
    6460 
    6461 > select add #21/B:41
    6462 
    6463 455 atoms, 490 bonds, 21 residues, 1 model selected 
    6464 
    6465 > select add #21/B:40
    6466 
    6467 478 atoms, 515 bonds, 22 residues, 1 model selected 
    6468 
    6469 > select add #21/B:39
    6470 
    6471 500 atoms, 539 bonds, 23 residues, 1 model selected 
    6472 
    6473 > select add #21/B:38
    6474 
    6475 522 atoms, 563 bonds, 24 residues, 1 model selected 
    6476 
    6477 > select add #21/B:37
    6478 
    6479 545 atoms, 588 bonds, 25 residues, 1 model selected 
    6480 
    6481 > select add #21/B:36
    6482 
    6483 568 atoms, 613 bonds, 26 residues, 1 model selected 
    6484 
    6485 > delete atoms sel
    6486 
    6487 > delete bonds sel
    6488 
    6489 > hide #27 models
    6490 
    6491 Drag select of 280 atoms, 309 bonds, 18 residues 
    6492 
    6493 > delete atoms sel
    6494 
    6495 > delete bonds sel
    6496 
    6497 > show #27 models
    6498 
    6499 > show #!1 models
    6500 
    6501 > hide #!1 models
    6502 
    6503 > select #25/A:1
    6504 
    6505 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6506 
    6507 > show #!1 models
    6508 
    6509 > view matrix models
    6510 > #25,-0.98432,0.13603,-0.11229,190.73,-0.10998,0.024412,0.99363,249.38,0.1379,0.9904,-0.0090693,262.54
    6511 
    6512 > fitmap #25 inMap #1
    6513 
    6514 Fit molecule fold_2024_07_21_21_09_model_0.cif (#25) to map
    6515 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 212 atoms 
    6516 average map value = 4.577, steps = 64 
    6517 shifted from previous position = 1.02 
    6518 rotated from previous position = 0.0143 degrees 
    6519 atoms outside contour = 45, contour level = 3.557 
    6520  
    6521 Position of fold_2024_07_21_21_09_model_0.cif (#25) relative to
    6522 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    6523 Matrix rotation and translation 
    6524 -0.98427820 0.13617421 -0.11248552 191.16678827 
    6525 -0.11016541 0.02447990 0.99361175 248.46373434 
    6526 0.13805793 0.99038241 -0.00909335 262.57611094 
    6527 Axis -0.00919054 -0.71303357 -0.70106966 
    6528 Axis point 93.48019577 0.00000000 20.80150922 
    6529 Rotation angle (degrees) 169.88127875 
    6530 Shift along axis -363.00405376 
    6531  
    6532 
    6533 > ui mousemode right "translate selected atoms"
    6534 
    6535 > select #28/A:240
    6536 
    6537 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6538 
    6539 > hide #!1 models
    6540 
    6541 > show #!1 models
    6542 
    6543 > select clear
    6544 
    6545 > select #27/A:276
    6546 
    6547 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6548 
    6549 > select add #27/A:275
    6550 
    6551 45 atoms, 49 bonds, 2 residues, 1 model selected 
    6552 
    6553 > select add #27/A:274
    6554 
    6555 65 atoms, 70 bonds, 3 residues, 1 model selected 
    6556 
    6557 > select subtract #27/A:274
    6558 
    6559 45 atoms, 49 bonds, 2 residues, 1 model selected 
    6560 
    6561 > select subtract #27/A:276
    6562 
    6563 22 atoms, 24 bonds, 1 residue, 1 model selected 
    6564 
    6565 > select subtract #27/A:275
    6566 
    6567 Nothing selected 
    6568 
    6569 > select add #27/A:276
    6570 
    6571 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6572 
    6573 > select add #27/A:249
    6574 
    6575 43 atoms, 46 bonds, 2 residues, 1 model selected 
    6576 
    6577 > select clear
    6578 
    6579 > select #27/A:249
    6580 
    6581 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6582 
    6583 > hide #!1 models
    6584 
    6585 > select add #27/A:250
    6586 
    6587 40 atoms, 42 bonds, 2 residues, 1 model selected 
    6588 
    6589 > show #!1 models
    6590 
    6591 > select subtract #27/A:250
    6592 
    6593 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6594 
    6595 > select #27/A:250
    6596 
    6597 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6598 
    6599 > hide #!1 models
    6600 
    6601 > select add #27/A:249
    6602 
    6603 40 atoms, 42 bonds, 2 residues, 1 model selected 
    6604 
    6605 > select subtract #27/A:250
    6606 
    6607 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6608 
    6609 > show #!1 models
    6610 
    6611 > hide #!1 models
    6612 
    6613 > select clear
    6614 
    6615 > show #!1 models
    6616 
    6617 > select #27/A:250
    6618 
    6619 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6620 
    6621 > select add #27/A:251
    6622 
    6623 42 atoms, 45 bonds, 2 residues, 1 model selected 
    6624 
    6625 > select add #27/A:252
    6626 
    6627 65 atoms, 70 bonds, 3 residues, 1 model selected 
    6628 
    6629 > select add #27/A:253
    6630 
    6631 88 atoms, 95 bonds, 4 residues, 1 model selected 
    6632 
    6633 > select subtract #27/A:253
    6634 
    6635 65 atoms, 70 bonds, 3 residues, 1 model selected 
    6636 
    6637 > select subtract #27/A:252
    6638 
    6639 42 atoms, 45 bonds, 2 residues, 1 model selected 
    6640 
    6641 > select add #27/A:249
    6642 
    6643 62 atoms, 66 bonds, 3 residues, 1 model selected 
    6644 
    6645 > select clear
    6646 
    6647 > select #27/A:249
    6648 
    6649 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6650 
    6651 > select #27/A:253
    6652 
    6653 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6654 
    6655 > select #27/A:252
    6656 
    6657 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6658 
    6659 > select #27/A:253
    6660 
    6661 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6662 
    6663 > select add #27/A:252
    6664 
    6665 46 atoms, 50 bonds, 2 residues, 1 model selected 
    6666 
    6667 > select add #27/A:251
    6668 
    6669 68 atoms, 74 bonds, 3 residues, 1 model selected 
    6670 
    6671 > select #27/A:249
    6672 
    6673 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6674 
    6675 > delete atoms sel
    6676 
    6677 > delete bonds sel
    6678 
    6679 > select #27/A:250
    6680 
    6681 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6682 
    6683 > delete atoms sel
    6684 
    6685 > delete bonds sel
    6686 
    6687 > select #27/A:253
    6688 
    6689 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6690 
    6691 > select add #27/A:252
    6692 
    6693 46 atoms, 50 bonds, 2 residues, 1 model selected 
    6694 
    6695 > select add #27/A:251
    6696 
    6697 68 atoms, 74 bonds, 3 residues, 1 model selected 
    6698 
    6699 > select #27/A:254
    6700 
    6701 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6702 
    6703 > select #27/A:253
    6704 
    6705 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6706 
    6707 > select #27/A:252
    6708 
    6709 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6710 
    6711 > select #27/A:251
    6712 
    6713 22 atoms, 24 bonds, 1 residue, 1 model selected 
    6714 
    6715 > select #27/A:252
    6716 
    6717 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6718 
    6719 > select #27/A:254
    6720 
    6721 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6722 
    6723 > select #27/A:253
    6724 
    6725 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6726 
    6727 > select #27/A:252
    6728 
    6729 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6730 
    6731 > select #27/A:251
    6732 
    6733 22 atoms, 24 bonds, 1 residue, 1 model selected 
    6734 
    6735 > select #27/A:253
    6736 
    6737 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6738 
    6739 > select #27/A:252
    6740 
    6741 23 atoms, 25 bonds, 1 residue, 1 model selected 
    6742 
    6743 > select #27/A:251
    6744 
    6745 22 atoms, 24 bonds, 1 residue, 1 model selected 
    6746 
    6747 > select #27/A:251
    6748 
    6749 22 atoms, 24 bonds, 1 residue, 1 model selected 
    6750 
    6751 > ui tool show "Model Panel"
    6752 
    6753 > combine #21 #22 #23 #25 #27 #28
    6754 
    6755 Remapping chain ID 'D' in R-21.pdb #22 to 'E' 
    6756 Remapping chain ID 'D' in R21-1.pdb #23 to 'F' 
    6757 Remapping chain ID 'A' in R_249-277.pdb #27 to 'B' 
    6758 Remapping chain ID 'A' in R-224-240.pdb #28 to 'G' 
    6759 
    6760 > hide #!21 models
    6761 
    6762 > hide #22 models
    6763 
    6764 > hide #23 models
    6765 
    6766 > hide #25 models
    6767 
    6768 > hide #27 models
    6769 
    6770 > hide #28 models
    6771 
    6772 > show #!2 models
    6773 
    6774 > hide #!1 models
    6775 
    6776 > select #2
    6777 
    6778 2 models selected 
    6779 
    6780 > ui mousemode right "translate selected models"
    6781 
    6782 > ui mousemode right "rotate selected models"
    6783 
    6784 > view matrix models
    6785 > #2,-0.8681,-0.49636,-0.0054412,496,0.055952,-0.086953,-0.99464,408,0.49323,-0.86375,0.10326,250.83
    6786 
    6787 > view matrix models
    6788 > #2,-0.43728,0.86473,-0.24705,181.73,-0.14096,-0.33721,-0.93081,486.77,-0.88821,-0.3722,0.26935,411.27
    6789 
    6790 > view matrix models
    6791 > #2,-0.18991,0.97867,0.078309,40.321,-0.63544,-0.061717,-0.76968,503.59,-0.74844,-0.19593,0.63361,272.27
    6792 
    6793 > view matrix models
    6794 > #2,-0.24426,0.96946,0.021836,65.169,-0.536,-0.11621,-0.83618,506.96,-0.80811,-0.21595,0.54801,306.33
    6795 
    6796 > ui mousemode right "translate selected models"
    6797 
    6798 > view matrix models
    6799 > #2,-0.24426,0.96946,0.021836,84.902,-0.536,-0.11621,-0.83618,522.32,-0.80811,-0.21595,0.54801,329.55
    6800 
    6801 > view matrix models
    6802 > #2,-0.24426,0.96946,0.021836,80.212,-0.536,-0.11621,-0.83618,523.43,-0.80811,-0.21595,0.54801,329.68
    6803 
    6804 > view matrix models
    6805 > #2,-0.24426,0.96946,0.021836,79.228,-0.536,-0.11621,-0.83618,521.77,-0.80811,-0.21595,0.54801,329.97
    6806 
    6807 > fitmap #29 inMap #2
    6808 
    6809 Fit molecule combination (#29) to map
    6810 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 12136 atoms 
    6811 average map value = 4.534, steps = 216 
    6812 shifted from previous position = 6.89 
    6813 rotated from previous position = 17.5 degrees 
    6814 atoms outside contour = 5657, contour level = 3.0813 
    6815  
    6816 Position of combination (#29) relative to
    6817 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    6818 Matrix rotation and translation 
    6819 0.99999969 0.00033307 -0.00071765 0.05150646 
    6820 -0.00033296 0.99999993 0.00015563 0.04534734 
    6821 0.00071771 -0.00015539 0.99999973 -0.12653802 
    6822 Axis -0.19286697 -0.89007017 -0.41301019 
    6823 Axis point 175.20524833 0.00000000 72.22236298 
    6824 Rotation angle (degrees) 0.04619864 
    6825 Shift along axis 0.00196528 
    6826  
    6827 
    6828 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-7.pdb models
    6829 > #29 relModel #2
    6830 
    6831 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/RealSpaceRefine_6/R-combine-
    6832 > new-7_real_space_refined_006.pdb
    6833 
    6834 Chain information for R-combine-new-7_real_space_refined_006.pdb #30 
    6835 --- 
    6836 Chain | Description 
    6837 A | No description available 
    6838 B | No description available 
    6839 C | No description available 
    6840 D | No description available 
    6841 E | No description available 
    6842 F | No description available 
    6843 G | No description available 
    6844 H | No description available 
    6845  
    6846 
    6847 > select #30/H:45@O2
    6848 
    6849 1 atom, 1 residue, 1 model selected 
    6850 
    6851 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6852 QFlags(NoModifier) 
    6853 
    6854 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6855 QFlags(ShiftModifier) 
    6856 
    6857 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6858 QFlags(ControlModifier) 
    6859 
    6860 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6861 QFlags(ShiftModifier|ControlModifier) 
    6862 
    6863 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6864 QFlags(AltModifier) 
    6865 
    6866 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6867 QFlags(ShiftModifier|AltModifier) 
    6868 
    6869 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6870 QFlags(ControlModifier|AltModifier) 
    6871 
    6872 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6873 QFlags(ShiftModifier|ControlModifier|AltModifier) 
    6874 
    6875 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6876 QFlags(MetaModifier) 
    6877 
    6878 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6879 QFlags(ShiftModifier|MetaModifier) 
    6880 
    6881 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6882 QFlags(ControlModifier|MetaModifier) 
    6883 
    6884 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6885 QFlags(ShiftModifier|ControlModifier|MetaModifier) 
    6886 
    6887 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6888 QFlags(AltModifier|MetaModifier) 
    6889 
    6890 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6891 QFlags(ShiftModifier|AltModifier|MetaModifier) 
    6892 
    6893 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6894 QFlags(ControlModifier|AltModifier|MetaModifier) 
    6895 
    6896 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    6897 QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) 
    6898 
    6899 > select up
    6900 
    6901 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6902 
    6903 > select up
    6904 
    6905 6069 atoms, 6800 bonds, 283 residues, 1 model selected 
    6906 
    6907 > select up
    6908 
    6909 12136 atoms, 13587 bonds, 567 residues, 1 model selected 
    6910 
    6911 > style sel stick
    6912 
    6913 Changed 12136 atom styles 
    6914 
    6915 > cartoon sel
    6916 
    6917 > ui mousemode right "rotate selected models"
    6918 
    6919 > view matrix models
    6920 > #30,0.29014,0.74582,0.59964,-116.72,0.084308,0.60424,-0.79233,225.15,-0.95326,0.28044,0.11243,339.41
    6921 
    6922 > view matrix models
    6923 > #30,0.37552,0.92503,-0.057467,-26.204,-0.34165,0.080525,-0.93637,440.99,-0.86154,0.37126,0.34628,253.41
    6924 
    6925 > view matrix models
    6926 > #30,-0.19245,0.9604,-0.20148,117.11,-0.0074181,-0.20674,-0.97837,432.63,-0.98128,-0.18679,0.046912,444.75
    6927 
    6928 > ui mousemode right "translate selected models"
    6929 
    6930 > view matrix models
    6931 > #30,-0.19245,0.9604,-0.20148,109.72,-0.0074181,-0.20674,-0.97837,453.92,-0.98128,-0.18679,0.046912,448.6
    6932 
    6933 > view matrix models
    6934 > #30,-0.19245,0.9604,-0.20148,113.68,-0.0074181,-0.20674,-0.97837,454.82,-0.98128,-0.18679,0.046912,457.79
    6935 
    6936 > fitmap #30 inMap #2
    6937 
    6938 Fit molecule R-combine-new-7_real_space_refined_006.pdb (#30) to map
    6939 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 12136 atoms 
    6940 average map value = 4.856, steps = 308 
    6941 shifted from previous position = 9.42 
    6942 rotated from previous position = 32.9 degrees 
    6943 atoms outside contour = 5066, contour level = 3.0813 
    6944  
    6945 Position of R-combine-new-7_real_space_refined_006.pdb (#30) relative to
    6946 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    6947 Matrix rotation and translation 
    6948 0.99999998 -0.00007985 -0.00020629 0.04532712 
    6949 0.00007991 0.99999995 0.00030025 -0.06461344 
    6950 0.00020627 -0.00030026 0.99999993 0.00824178 
    6951 Axis -0.80509561 -0.55311902 0.21419715 
    6952 Axis point 0.00000000 26.67958032 213.34072968 
    6953 Rotation angle (degrees) 0.02136818 
    6954 Shift along axis 0.00101163 
    6955  
    6956 
    6957 > hide #!29 models
    6958 
    6959 > select clear
    6960 
    6961 > select #30/H:552
    6962 
    6963 22 atoms, 24 bonds, 1 residue, 1 model selected 
    6964 
    6965 > delete atoms sel
    6966 
    6967 > delete bonds sel
    6968 
    6969 > hide #!30 models
    6970 
    6971 > hide #!2 models
    6972 
    6973 > show #19 models
    6974 
    6975 > select #19/B:545
    6976 
    6977 20 atoms, 21 bonds, 1 residue, 1 model selected 
    6978 
    6979 > select add #19/B:546
    6980 
    6981 42 atoms, 45 bonds, 2 residues, 1 model selected 
    6982 
    6983 > select add #19/B:547
    6984 
    6985 65 atoms, 70 bonds, 3 residues, 1 model selected 
    6986 
    6987 > select add #19/B:548
    6988 
    6989 88 atoms, 95 bonds, 4 residues, 1 model selected 
    6990 
    6991 > select add #19/B:549
    6992 
    6993 110 atoms, 119 bonds, 5 residues, 1 model selected 
    6994 
    6995 > select add #19/B:550
    6996 
    6997 133 atoms, 144 bonds, 6 residues, 1 model selected 
    6998 
    6999 > select add #19/B:551
    7000 
    7001 153 atoms, 165 bonds, 7 residues, 1 model selected 
    7002 
    7003 > select add #19/B:552
    7004 
    7005 175 atoms, 189 bonds, 8 residues, 1 model selected 
    7006 
    7007 > select add #19/B:553
    7008 
    7009 197 atoms, 213 bonds, 9 residues, 1 model selected 
    7010 
    7011 > select add #19/B:554
    7012 
    7013 219 atoms, 237 bonds, 10 residues, 1 model selected 
    7014 
    7015 > select add #19/B:555
    7016 
    7017 241 atoms, 261 bonds, 11 residues, 1 model selected 
    7018 
    7019 > select add #19/B:556
    7020 
    7021 264 atoms, 286 bonds, 12 residues, 1 model selected 
    7022 
    7023 > select add #19/B:557
    7024 
    7025 284 atoms, 307 bonds, 13 residues, 1 model selected 
    7026 
    7027 > select add #19/B:558
    7028 
    7029 304 atoms, 328 bonds, 14 residues, 1 model selected 
    7030 
    7031 > select add #19/B:559
    7032 
    7033 324 atoms, 349 bonds, 15 residues, 1 model selected 
    7034 
    7035 > select subtract #19/B:559
    7036 
    7037 304 atoms, 328 bonds, 14 residues, 1 model selected 
    7038 
    7039 > select ~sel & ##selected
    7040 
    7041 12042 atoms, 13491 bonds, 564 residues, 1 model selected 
    7042 
    7043 > delete atoms sel
    7044 
    7045 > delete bonds sel
    7046 
    7047 > ui tool show "Model Panel"
    7048 
    7049 > close #5
    7050 
    7051 > close #6
    7052 
    7053 > close #8
    7054 
    7055 > close #4
    7056 
    7057 > close #9
    7058 
    7059 > close #3
    7060 
    7061 > close #20
    7062 
    7063 > close #21
    7064 
    7065 > close #22-23#24
    7066 
    7067 > close #27-28#29
    7068 
    7069 > show #!30 models
    7070 
    7071 > show #!2 models
    7072 
    7073 > hide #19 models
    7074 
    7075 > show #19 models
    7076 
    7077 > hide #!30 models
    7078 
    7079 > show #!30 models
    7080 
    7081 > select clear
    7082 
    7083 > select #19/B:548
    7084 
    7085 23 atoms, 25 bonds, 1 residue, 1 model selected 
    7086 
    7087 > view matrix models #19,1,0,0,272.16,0,1,0,54.563,0,0,1,86.053
    7088 
    7089 > view matrix models #19,1,0,0,192.01,0,1,0,150.79,0,0,1,280.78
    7090 
    7091 > view matrix models #19,1,0,0,189.47,0,1,0,161.83,0,0,1,247.53
    7092 
    7093 > view matrix models #19,1,0,0,235.73,0,1,0,239.22,0,0,1,202.75
    7094 
    7095 > hide #!2 models
    7096 
    7097 > ui mousemode right "rotate selected models"
    7098 
    7099 > view matrix models
    7100 > #19,-0.15176,0.90128,-0.40579,295.92,0.77442,-0.14668,-0.61543,184.92,-0.6142,-0.40765,-0.67571,212.26
    7101 
    7102 > view matrix models
    7103 > #19,0.20481,0.17673,-0.96271,266.7,-0.47869,-0.83983,-0.25602,259.76,-0.85376,0.51328,-0.087406,235.67
    7104 
    7105 > view matrix models
    7106 > #19,-0.2402,0.25771,-0.93589,292.34,-0.22566,-0.95253,-0.20438,246.09,-0.94413,0.1621,0.28695,245.86
    7107 
    7108 > view matrix models
    7109 > #19,-0.59624,-0.22399,0.77093,336.75,-0.11371,-0.92704,-0.35729,237.74,0.79471,-0.3007,0.52727,150.81
    7110 
    7111 > ui mousemode right "translate selected models"
    7112 
    7113 > view matrix models
    7114 > #19,-0.59624,-0.22399,0.77093,326.18,-0.11371,-0.92704,-0.35729,224.76,0.79471,-0.3007,0.52727,157.14
    7115 
    7116 > ui mousemode right "rotate selected models"
    7117 
    7118 > view matrix models
    7119 > #19,-0.66767,0.72959,-0.14805,317.88,-0.69803,-0.5444,0.46517,270.51,0.25879,0.41392,0.87275,193.57
    7120 
    7121 > view matrix models
    7122 > #19,0.43952,0.69876,-0.56441,249.54,-0.89801,0.35581,-0.2588,272.58,0.019988,0.6206,0.78388,206.02
    7123 
    7124 > view matrix models
    7125 > #19,0.50983,0.85863,-0.053099,253.42,-0.18573,0.049593,-0.98135,221.48,-0.83998,0.51019,0.18476,245.36
    7126 
    7127 > view matrix models
    7128 > #19,0.0092013,0.63097,-0.77576,270.69,-0.12103,-0.76938,-0.62722,221.81,-0.99261,0.099663,0.069288,251.68
    7129 
    7130 > view matrix models
    7131 > #19,0.34562,0.57687,-0.74011,252.18,-0.40591,-0.6192,-0.67218,237.4,-0.84604,0.53274,0.02015,243.24
    7132 
    7133 > ui mousemode right "translate selected models"
    7134 
    7135 > view matrix models
    7136 > #19,0.34562,0.57687,-0.74011,226.49,-0.40591,-0.6192,-0.67218,253.79,-0.84604,0.53274,0.02015,249.5
    7137 
    7138 > view matrix models
    7139 > #19,0.34562,0.57687,-0.74011,231.13,-0.40591,-0.6192,-0.67218,257.78,-0.84604,0.53274,0.02015,246.33
    7140 
    7141 > ui mousemode right "rotate selected models"
    7142 
    7143 > view matrix models
    7144 > #19,-0.24338,-0.066931,-0.96762,260.08,-0.78392,-0.57391,0.23687,292.62,-0.57118,0.81618,0.087211,232.19
    7145 
    7146 > ui mousemode right "translate selected models"
    7147 
    7148 > view matrix models
    7149 > #19,-0.24338,-0.066931,-0.96762,262.34,-0.78392,-0.57391,0.23687,293.68,-0.57118,0.81618,0.087211,235.86
    7150 
    7151 > view matrix models
    7152 > #19,-0.24338,-0.066931,-0.96762,258.16,-0.78392,-0.57391,0.23687,295.71,-0.57118,0.81618,0.087211,236.3
    7153 
    7154 > view matrix models
    7155 > #19,-0.24338,-0.066931,-0.96762,257.31,-0.78392,-0.57391,0.23687,296.88,-0.57118,0.81618,0.087211,236.21
    7156 
    7157 > show #!1 models
    7158 
    7159 > hide #!1 models
    7160 
    7161 > show #!2 models
    7162 
    7163 > fitmap #19 inMap #2
    7164 
    7165 Fit molecule fold_r_e_m_model_4.cif (#19) to map
    7166 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 304 atoms 
    7167 average map value = 6.072, steps = 56 
    7168 shifted from previous position = 2.87 
    7169 rotated from previous position = 11.7 degrees 
    7170 atoms outside contour = 67, contour level = 3.0813 
    7171  
    7172 Position of fold_r_e_m_model_4.cif (#19) relative to
    7173 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    7174 Matrix rotation and translation 
    7175 0.90559455 -0.40278986 0.13288663 154.17129879 
    7176 0.12132778 -0.05420770 -0.99113122 212.43610847 
    7177 0.40642108 0.91368587 -0.00022060 137.50758412 
    7178 Axis 0.95505670 -0.13714750 0.26278747 
    7179 Axis point 0.00000000 70.16605908 161.04879179 
    7180 Rotation angle (degrees) 94.26771815 
    7181 Shift along axis 154.24252073 
    7182  
    7183 
    7184 > hide #!2 models
    7185 
    7186 > select clear
    7187 
    7188 > select #30/H:558
    7189 
    7190 20 atoms, 21 bonds, 1 residue, 1 model selected 
    7191 
    7192 > select add #30/H:557
    7193 
    7194 40 atoms, 42 bonds, 2 residues, 1 model selected 
    7195 
    7196 > select add #30/H:556
    7197 
    7198 63 atoms, 67 bonds, 3 residues, 1 model selected 
    7199 
    7200 > select add #30/H:555
    7201 
    7202 85 atoms, 91 bonds, 4 residues, 1 model selected 
    7203 
    7204 > select add #30/H:554@C4'
    7205 
    7206 86 atoms, 91 bonds, 5 residues, 1 model selected 
    7207 
    7208 > select add #30/H:553
    7209 
    7210 108 atoms, 115 bonds, 6 residues, 1 model selected 
    7211 
    7212 > select add #30/H:551
    7213 
    7214 128 atoms, 136 bonds, 7 residues, 1 model selected 
    7215 
    7216 > select add #30/H:550
    7217 
    7218 151 atoms, 161 bonds, 8 residues, 1 model selected 
    7219 
    7220 > select add #30/H:549
    7221 
    7222 173 atoms, 185 bonds, 9 residues, 1 model selected 
    7223 
    7224 > select add #30/H:548
    7225 
    7226 196 atoms, 210 bonds, 10 residues, 1 model selected 
    7227 
    7228 > select add #30/H:547
    7229 
    7230 219 atoms, 235 bonds, 11 residues, 1 model selected 
    7231 
    7232 > select add #19/B:547
    7233 
    7234 242 atoms, 260 bonds, 12 residues, 2 models selected 
    7235 
    7236 > select subtract #19/B:547
    7237 
    7238 219 atoms, 235 bonds, 11 residues, 1 model selected 
    7239 
    7240 > select add #30/H:546
    7241 
    7242 241 atoms, 259 bonds, 12 residues, 1 model selected 
    7243 
    7244 > select add #30/H:545
    7245 
    7246 261 atoms, 280 bonds, 13 residues, 1 model selected 
    7247 
    7248 > delete atoms sel
    7249 
    7250 > delete bonds sel
    7251 
    7252 > combine #19 #30
    7253 
    7254 Remapping chain ID 'B' in R-combine-new-7_real_space_refined_006.pdb #30 to
    7255 'I' 
    7256 
    7257 > hide #19 models
    7258 
    7259 > hide #!30 models
    7260 
    7261 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-8.pdb models #3
    7262 > relModel #2
    7263 
    7264 > show #!2 models
    7265 
    7266 > fitmap #3 inMap #2
    7267 
    7268 Fit molecule combination (#3) to map
    7269 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 12157 atoms 
    7270 average map value = 4.833, steps = 72 
    7271 shifted from previous position = 0.0145 
    7272 rotated from previous position = 0.00778 degrees 
    7273 atoms outside contour = 5106, contour level = 3.0813 
    7274  
    7275 Position of combination (#3) relative to
    7276 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    7277 Matrix rotation and translation 
    7278 0.90556539 -0.40282720 0.13297207 154.16586673 
    7279 0.12136748 -0.05432863 -0.99111974 212.42797707 
    7280 0.40647418 0.91366222 -0.00030800 137.51280283 
    7281 Axis 0.95504758 -0.13713251 0.26282844 
    7282 Axis point 0.00000000 70.16681139 161.03141023 
    7283 Rotation angle (degrees) 94.27454059 
    7284 Shift along axis 154.24723228 
    7285  
    7286 
    7287 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-8.pdb models #3
    7288 > relModel #2
    7289 
    7290 > show #19 models
    7291 
    7292 > hide #19 models
    7293 
    7294 > show #!18 models
    7295 
    7296 > hide #!3 models
    7297 
    7298 > close #18
    7299 
    7300 > show #15 models
    7301 
    7302 > show #!16 models
    7303 
    7304 > hide #15 models
    7305 
    7306 > close #16
    7307 
    7308 > show #7 models
    7309 
    7310 > select #7/A:545
    7311 
    7312 20 atoms, 21 bonds, 1 residue, 1 model selected 
    7313 
    7314 > select add #7/A:175
    7315 
    7316 40 atoms, 42 bonds, 2 residues, 1 model selected 
    7317 
    7318 > select add #7/A:174
    7319 
    7320 63 atoms, 67 bonds, 3 residues, 1 model selected 
    7321 
    7322 > select add #7/A:544
    7323 
    7324 86 atoms, 92 bonds, 4 residues, 1 model selected 
    7325 
    7326 > select add #7/A:176
    7327 
    7328 109 atoms, 117 bonds, 5 residues, 1 model selected 
    7329 
    7330 > select add #7/A:177
    7331 
    7332 132 atoms, 142 bonds, 6 residues, 1 model selected 
    7333 
    7334 > select add #7/A:543
    7335 
    7336 154 atoms, 166 bonds, 7 residues, 1 model selected 
    7337 
    7338 > select add #7/A:542
    7339 
    7340 176 atoms, 190 bonds, 8 residues, 1 model selected 
    7341 
    7342 > select add #7/A:541
    7343 
    7344 199 atoms, 215 bonds, 9 residues, 1 model selected 
    7345 
    7346 > select add #7/A:540
    7347 
    7348 219 atoms, 236 bonds, 10 residues, 1 model selected 
    7349 
    7350 > select add #7/A:539
    7351 
    7352 241 atoms, 260 bonds, 11 residues, 1 model selected 
    7353 
    7354 > select add #7/A:538
    7355 
    7356 261 atoms, 281 bonds, 12 residues, 1 model selected 
    7357 
    7358 > select add #7/A:538
    7359 
    7360 261 atoms, 281 bonds, 12 residues, 1 model selected 
    7361 
    7362 > select add #7/A:537
    7363 
    7364 284 atoms, 306 bonds, 13 residues, 1 model selected 
    7365 
    7366 > select add #7/A:536
    7367 
    7368 304 atoms, 327 bonds, 14 residues, 1 model selected 
    7369 
    7370 > select add #7/A:178
    7371 
    7372 326 atoms, 351 bonds, 15 residues, 1 model selected 
    7373 
    7374 > select add #7/A:179
    7375 
    7376 349 atoms, 376 bonds, 16 residues, 1 model selected 
    7377 
    7378 > select add #7/A:180
    7379 
    7380 369 atoms, 397 bonds, 17 residues, 1 model selected 
    7381 
    7382 > select add #7/A:181
    7383 
    7384 392 atoms, 422 bonds, 18 residues, 1 model selected 
    7385 
    7386 > select add #7/A:182
    7387 
    7388 412 atoms, 443 bonds, 19 residues, 1 model selected 
    7389 
    7390 > select add #7/A:183
    7391 
    7392 434 atoms, 467 bonds, 20 residues, 1 model selected 
    7393 
    7394 > select add #7/A:184
    7395 
    7396 454 atoms, 488 bonds, 21 residues, 1 model selected 
    7397 
    7398 > select add #7/A:185
    7399 
    7400 476 atoms, 512 bonds, 22 residues, 1 model selected 
    7401 
    7402 > select add #7/A:535
    7403 
    7404 499 atoms, 537 bonds, 23 residues, 1 model selected 
    7405 
    7406 > select add #7/A:534
    7407 
    7408 519 atoms, 558 bonds, 24 residues, 1 model selected 
    7409 
    7410 > select add #7/A:533
    7411 
    7412 542 atoms, 583 bonds, 25 residues, 1 model selected 
    7413 
    7414 > select add #7/A:532
    7415 
    7416 564 atoms, 607 bonds, 26 residues, 1 model selected 
    7417 
    7418 > select add #7/A:531
    7419 
    7420 587 atoms, 632 bonds, 27 residues, 1 model selected 
    7421 
    7422 > select add #7/A:76
    7423 
    7424 609 atoms, 656 bonds, 28 residues, 1 model selected 
    7425 
    7426 > select subtract #7/A:76
    7427 
    7428 587 atoms, 632 bonds, 27 residues, 1 model selected 
    7429 
    7430 > select add #7/A:530
    7431 
    7432 607 atoms, 653 bonds, 28 residues, 1 model selected 
    7433 
    7434 > select add #7/A:529
    7435 
    7436 630 atoms, 678 bonds, 29 residues, 1 model selected 
    7437 
    7438 > select add #7/A:528
    7439 
    7440 652 atoms, 702 bonds, 30 residues, 1 model selected 
    7441 
    7442 > select add #7/A:526
    7443 
    7444 675 atoms, 727 bonds, 31 residues, 1 model selected 
    7445 
    7446 > select add #7/A:527
    7447 
    7448 695 atoms, 748 bonds, 32 residues, 1 model selected 
    7449 
    7450 > select add #7/A:186
    7451 
    7452 715 atoms, 769 bonds, 33 residues, 1 model selected 
    7453 
    7454 > select add #7/A:187
    7455 
    7456 738 atoms, 794 bonds, 34 residues, 1 model selected 
    7457 
    7458 > select add #7/A:188
    7459 
    7460 761 atoms, 819 bonds, 35 residues, 1 model selected 
    7461 
    7462 > select add #7/A:189
    7463 
    7464 783 atoms, 843 bonds, 36 residues, 1 model selected 
    7465 
    7466 > select add #7/A:190
    7467 
    7468 803 atoms, 864 bonds, 37 residues, 1 model selected 
    7469 
    7470 > select add #7/A:191
    7471 
    7472 823 atoms, 885 bonds, 38 residues, 1 model selected 
    7473 
    7474 > select add #7/A:192
    7475 
    7476 846 atoms, 910 bonds, 39 residues, 1 model selected 
    7477 
    7478 > select add #7/A:525
    7479 
    7480 866 atoms, 931 bonds, 40 residues, 1 model selected 
    7481 
    7482 > select add #7/A:524
    7483 
    7484 888 atoms, 955 bonds, 41 residues, 1 model selected 
    7485 
    7486 > select add #7/A:193
    7487 
    7488 908 atoms, 976 bonds, 42 residues, 1 model selected 
    7489 
    7490 > select subtract #7/A:346
    7491 
    7492 908 atoms, 976 bonds, 42 residues, 1 model selected 
    7493 
    7494 > select add #7/A:194
    7495 
    7496 930 atoms, 1000 bonds, 43 residues, 1 model selected 
    7497 
    7498 > select add #7/A:195
    7499 
    7500 952 atoms, 1024 bonds, 44 residues, 1 model selected 
    7501 
    7502 > select add #7/A:196
    7503 
    7504 975 atoms, 1049 bonds, 45 residues, 1 model selected 
    7505 
    7506 > select add #7/A:197
    7507 
    7508 998 atoms, 1074 bonds, 46 residues, 1 model selected 
    7509 
    7510 > select add #7/A:198
    7511 
    7512 1018 atoms, 1095 bonds, 47 residues, 1 model selected 
    7513 
    7514 > select add #7/A:199
    7515 
    7516 1040 atoms, 1119 bonds, 48 residues, 1 model selected 
    7517 
    7518 > select subtract #7/A:199
    7519 
    7520 1018 atoms, 1095 bonds, 47 residues, 1 model selected 
    7521 
    7522 > select add #7/A:519
    7523 
    7524 1040 atoms, 1119 bonds, 48 residues, 1 model selected 
    7525 
    7526 > select add #7/A:520
    7527 
    7528 1060 atoms, 1140 bonds, 49 residues, 1 model selected 
    7529 
    7530 > select add #7/A:521
    7531 
    7532 1080 atoms, 1161 bonds, 50 residues, 1 model selected 
    7533 
    7534 > select add #7/A:522
    7535 
    7536 1103 atoms, 1186 bonds, 51 residues, 1 model selected 
    7537 
    7538 > select add #7/A:523
    7539 
    7540 1125 atoms, 1210 bonds, 52 residues, 1 model selected 
    7541 
    7542 > select add #7/A:518
    7543 
    7544 1148 atoms, 1235 bonds, 53 residues, 1 model selected 
    7545 
    7546 > select add #7/A:517
    7547 
    7548 1168 atoms, 1256 bonds, 54 residues, 1 model selected 
    7549 
    7550 > select add #7/A:516
    7551 
    7552 1191 atoms, 1281 bonds, 55 residues, 1 model selected 
    7553 
    7554 > select add #7/A:515
    7555 
    7556 1211 atoms, 1302 bonds, 56 residues, 1 model selected 
    7557 
    7558 > view matrix models #7,1,0,0,2.2735,0,1,0,2.2992,0,0,1,-1.7424
    7559 
    7560 > select ~sel & ##selected
    7561 
    7562 11134 atoms, 12476 bonds, 521 residues, 1 model selected 
    7563 
    7564 > delete atoms sel
    7565 
    7566 > delete bonds sel
    7567 
    7568 > show #!2 models
    7569 
    7570 > select #7/A:528
    7571 
    7572 22 atoms, 24 bonds, 1 residue, 1 model selected 
    7573 
    7574 > view matrix models #7,1,0,0,127.23,0,1,0,229.92,0,0,1,-15.073
    7575 
    7576 > view matrix models #7,1,0,0,269.68,0,1,0,129.86,0,0,1,179.9
    7577 
    7578 > view matrix models #7,1,0,0,270.52,0,1,0,214.69,0,0,1,203.03
    7579 
    7580 > view matrix models #7,1,0,0,281.23,0,1,0,213.54,0,0,1,212.45
    7581 
    7582 > ui mousemode right "rotate selected models"
    7583 
    7584 > view matrix models
    7585 > #7,-0.16182,0.97199,0.17044,236.05,-0.98283,-0.14322,-0.11635,194.17,-0.088685,-0.18634,0.97847,211.5
    7586 
    7587 > view matrix models
    7588 > #7,-0.81527,-0.50332,0.28638,229.61,0.47003,-0.28628,0.83494,238.88,-0.33825,0.8153,0.46997,195.14
    7589 
    7590 > view matrix models
    7591 > #7,-0.78176,-0.066011,-0.62008,227.86,-0.32829,-0.80186,0.49925,219.62,-0.53017,0.59386,0.60519,191.11
    7592 
    7593 > view matrix models
    7594 > #7,0.52131,-0.31011,-0.79503,270.56,-0.59328,-0.80136,-0.076444,212.3,-0.61339,0.51153,-0.60174,191.09
    7595 
    7596 > view matrix models
    7597 > #7,0.93031,0.10759,0.35065,277.56,0.23889,-0.90317,-0.35667,239.31,0.27832,0.41558,-0.86593,219.86
    7598 
    7599 > view matrix models
    7600 > #7,-0.48999,-0.041808,0.87072,234.44,0.60609,-0.73425,0.30582,248.06,0.62654,0.67759,0.38512,226.29
    7601 
    7602 > ui mousemode right "translate selected models"
    7603 
    7604 > view matrix models
    7605 > #7,-0.48999,-0.041808,0.87072,228.73,0.60609,-0.73425,0.30582,246.43,0.62654,0.67759,0.38512,236.64
    7606 
    7607 > fitmap #7 inMap #2
    7608 
    7609 Fit molecule fold_r_e_model_0.cif (#7) to map
    7610 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1211 atoms 
    7611 average map value = 3.936, steps = 308 
    7612 shifted from previous position = 5.18 
    7613 rotated from previous position = 20.5 degrees 
    7614 atoms outside contour = 574, contour level = 3.0813 
    7615  
    7616 Position of fold_r_e_model_0.cif (#7) relative to
    7617 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    7618 Matrix rotation and translation 
    7619 -0.55176898 -0.22561714 -0.80289968 190.08039980 
    7620 -0.83398172 0.14343865 0.53282252 194.77034322 
    7621 -0.00504704 0.96359860 -0.26730557 187.45468828 
    7622 Axis 0.39451993 -0.73070159 -0.55716175 
    7623 Axis point 128.96993918 0.00000000 71.88439885 
    7624 Rotation angle (degrees) 146.91041277 
    7625 Shift along axis -171.77107506 
    7626  
    7627 
    7628 > show #!30 models
    7629 
    7630 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-8-coot-0.pdb
    7631 
    7632 Chain information for R-combine-new-8-coot-0.pdb #4 
    7633 --- 
    7634 Chain | Description 
    7635 A | No description available 
    7636 C | No description available 
    7637 D | No description available 
    7638 E | No description available 
    7639 F | No description available 
    7640 G | No description available 
    7641 H | No description available 
    7642 I | No description available 
    7643  
    7644 
    7645 > close #30
    7646 
    7647 > select #4/H:66@P
    7648 
    7649 1 atom, 1 residue, 1 model selected 
    7650 
    7651 > select up
    7652 
    7653 20 atoms, 21 bonds, 1 residue, 1 model selected 
    7654 
    7655 > select up
    7656 
    7657 6046 atoms, 6774 bonds, 282 residues, 1 model selected 
    7658 
    7659 > select up
    7660 
    7661 12113 atoms, 13561 bonds, 566 residues, 1 model selected 
    7662 
    7663 > style sel stick
    7664 
    7665 Changed 12113 atom styles 
    7666 
    7667 > cartoon sel
    7668 
    7669 > select #4/H:75
    7670 
    7671 23 atoms, 25 bonds, 1 residue, 1 model selected 
    7672 
    7673 > ui mousemode right "rotate selected models"
    7674 
    7675 > view matrix models
    7676 > #4,-0.60062,0.56271,0.568,109.88,-0.38985,0.41413,-0.82251,365.59,-0.69805,-0.71545,-0.02936,498.24
    7677 
    7678 > view matrix models
    7679 > #4,-0.23374,0.96387,-0.12775,109.3,-0.48945,-0.23017,-0.8411,507.95,-0.84012,-0.13407,0.52557,302.25
    7680 
    7681 > view matrix models
    7682 > #4,-0.032216,0.99314,-0.1124,58.476,-0.44156,-0.11503,-0.88983,487.37,-0.89665,0.020965,0.44224,303.67
    7683 
    7684 > view matrix models
    7685 > #4,-0.011842,0.97693,-0.21324,78.856,-0.026079,-0.21348,-0.9766,437.08,-0.99959,-0.006004,0.028005,419.21
    7686 
    7687 > view matrix models
    7688 > #4,0.17872,0.98355,0.026145,-13.682,-0.43615,0.10302,-0.89396,447.27,-0.88195,0.14837,0.44739,276.29
    7689 
    7690 > ui mousemode right "translate selected models"
    7691 
    7692 > view matrix models
    7693 > #4,0.17872,0.98355,0.026145,-14.101,-0.43615,0.10302,-0.89396,447.33,-0.88195,0.14837,0.44739,297.13
    7694 
    7695 > view matrix models
    7696 > #4,0.17872,0.98355,0.026145,-17.172,-0.43615,0.10302,-0.89396,463.59,-0.88195,0.14837,0.44739,294.73
    7697 
    7698 > fitmap #4 inMap #2
    7699 
    7700 Fit molecule R-combine-new-8-coot-0.pdb (#4) to map
    7701 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 12113 atoms 
    7702 average map value = 4.876, steps = 248 
    7703 shifted from previous position = 9.72 
    7704 rotated from previous position = 25.5 degrees 
    7705 atoms outside contour = 5024, contour level = 3.0813 
    7706  
    7707 Position of R-combine-new-8-coot-0.pdb (#4) relative to
    7708 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    7709 Matrix rotation and translation 
    7710 1.00000000 -0.00008287 -0.00001579 0.01443366 
    7711 0.00008287 1.00000000 -0.00000461 -0.01996177 
    7712 0.00001579 0.00000461 1.00000000 0.00342560 
    7713 Axis 0.05451300 -0.18695372 0.98085506 
    7714 Axis point 223.12489126 168.98868431 0.00000000 
    7715 Rotation angle (degrees) 0.00484052 
    7716 Shift along axis 0.00787876 
    7717  
    7718 
    7719 > hide #!2 models
    7720 
    7721 > view matrix models
    7722 > #4,-0.24418,0.96948,0.021836,79.143,-0.53602,-0.11617,-0.83617,522.14,-0.80812,-0.21588,0.54803,330.02
    7723 
    7724 > combine #4 #7
    7725 
    7726 Remapping chain ID 'A' in fold_r_e_model_0.cif #7 to 'B' 
    7727 
    7728 > hide #!7 models
    7729 
    7730 > hide #!4 models
    7731 
    7732 > show #!2 models
    7733 
    7734 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-9.pdb models #5
    7735 > relModel #5
    7736 
    7737 > select #5/B:515
    7738 
    7739 20 atoms, 21 bonds, 1 residue, 1 model selected 
    7740 
    7741 > select add #5/B:516
    7742 
    7743 43 atoms, 46 bonds, 2 residues, 1 model selected 
    7744 
    7745 > select add #5/B:517
    7746 
    7747 63 atoms, 67 bonds, 3 residues, 1 model selected 
    7748 
    7749 > select add #5/B:518
    7750 
    7751 86 atoms, 92 bonds, 4 residues, 1 model selected 
    7752 
    7753 > select add #5/B:519
    7754 
    7755 108 atoms, 116 bonds, 5 residues, 1 model selected 
    7756 
    7757 > select add #5/B:520
    7758 
    7759 128 atoms, 137 bonds, 6 residues, 1 model selected 
    7760 
    7761 > select add #5/B:521
    7762 
    7763 148 atoms, 158 bonds, 7 residues, 1 model selected 
    7764 
    7765 > select add #5/B:522
    7766 
    7767 171 atoms, 183 bonds, 8 residues, 1 model selected 
    7768 
    7769 > select add #5/B:523
    7770 
    7771 193 atoms, 207 bonds, 9 residues, 1 model selected 
    7772 
    7773 > select add #5/B:524
    7774 
    7775 215 atoms, 231 bonds, 10 residues, 1 model selected 
    7776 
    7777 > select add #5/B:525
    7778 
    7779 235 atoms, 252 bonds, 11 residues, 1 model selected 
    7780 
    7781 > select subtract #5/B:525
    7782 
    7783 215 atoms, 231 bonds, 10 residues, 1 model selected 
    7784 
    7785 > delete atoms sel
    7786 
    7787 > delete bonds sel
    7788 
    7789 > select add #5/B:198
    7790 
    7791 20 atoms, 21 bonds, 1 residue, 1 model selected 
    7792 
    7793 > select add #5/B:197
    7794 
    7795 43 atoms, 46 bonds, 2 residues, 1 model selected 
    7796 
    7797 > select add #5/B:196
    7798 
    7799 66 atoms, 71 bonds, 3 residues, 1 model selected 
    7800 
    7801 > select add #5/B:195
    7802 
    7803 88 atoms, 95 bonds, 4 residues, 1 model selected 
    7804 
    7805 > delete atoms sel
    7806 
    7807 > delete bonds sel
    7808 
    7809 > select #5/C:445
    7810 
    7811 23 atoms, 25 bonds, 1 residue, 1 model selected 
    7812 
    7813 > select add #5/C:446
    7814 
    7815 43 atoms, 46 bonds, 2 residues, 1 model selected 
    7816 
    7817 > select add #5/C:447
    7818 
    7819 66 atoms, 71 bonds, 3 residues, 1 model selected 
    7820 
    7821 > select add #5/C:444
    7822 
    7823 86 atoms, 92 bonds, 4 residues, 1 model selected 
    7824 
    7825 > delete atoms sel
    7826 
    7827 > delete bonds sel
    7828 
    7829 > select add #5/C:443
    7830 
    7831 20 atoms, 21 bonds, 1 residue, 1 model selected 
    7832 
    7833 > select add #5/C:442
    7834 
    7835 42 atoms, 45 bonds, 2 residues, 1 model selected 
    7836 
    7837 > delete atoms sel
    7838 
    7839 > delete bonds sel
    7840 
    7841 > show #!7 models
    7842 
    7843 > hide #!7 models
    7844 
    7845 > show #10 models
    7846 
    7847 > hide #!5 models
    7848 
    7849 > select #10/A:433
    7850 
    7851 20 atoms, 21 bonds, 1 residue, 1 model selected 
    7852 
    7853 > select add #10/A:434
    7854 
    7855 40 atoms, 42 bonds, 2 residues, 1 model selected 
    7856 
    7857 > select add #10/A:435
    7858 
    7859 63 atoms, 67 bonds, 3 residues, 1 model selected 
    7860 
    7861 > select add #10/A:436
    7862 
    7863 83 atoms, 88 bonds, 4 residues, 1 model selected 
    7864 
    7865 > select add #10/A:437
    7866 
    7867 103 atoms, 109 bonds, 5 residues, 1 model selected 
    7868 
    7869 > select add #10/A:438
    7870 
    7871 125 atoms, 133 bonds, 6 residues, 1 model selected 
    7872 
    7873 > select add #10/A:439
    7874 
    7875 148 atoms, 158 bonds, 7 residues, 1 model selected 
    7876 
    7877 > select add #10/A:440
    7878 
    7879 168 atoms, 179 bonds, 8 residues, 1 model selected 
    7880 
    7881 > select add #10/A:441
    7882 
    7883 188 atoms, 200 bonds, 9 residues, 1 model selected 
    7884 
    7885 > select add #10/A:442
    7886 
    7887 210 atoms, 224 bonds, 10 residues, 1 model selected 
    7888 
    7889 > select add #10/A:443
    7890 
    7891 230 atoms, 245 bonds, 11 residues, 1 model selected 
    7892 
    7893 > select add #10/A:444
    7894 
    7895 250 atoms, 266 bonds, 12 residues, 1 model selected 
    7896 
    7897 > select add #10/A:445
    7898 
    7899 273 atoms, 291 bonds, 13 residues, 1 model selected 
    7900 
    7901 > select add #10/A:446
    7902 
    7903 293 atoms, 312 bonds, 14 residues, 1 model selected 
    7904 
    7905 > select add #10/A:447
    7906 
    7907 316 atoms, 337 bonds, 15 residues, 1 model selected 
    7908 
    7909 > select add #10/A:448
    7910 
    7911 336 atoms, 358 bonds, 16 residues, 1 model selected 
    7912 
    7913 > select add #10/A:449
    7914 
    7915 356 atoms, 379 bonds, 17 residues, 1 model selected 
    7916 
    7917 > select add #10/A:450
    7918 
    7919 378 atoms, 403 bonds, 18 residues, 1 model selected 
    7920 
    7921 > select add #10/A:452
    7922 
    7923 400 atoms, 427 bonds, 19 residues, 1 model selected 
    7924 
    7925 > select add #10/A:451
    7926 
    7927 423 atoms, 452 bonds, 20 residues, 1 model selected 
    7928 
    7929 > select add #10/A:453
    7930 
    7931 443 atoms, 473 bonds, 21 residues, 1 model selected 
    7932 
    7933 > select add #10/A:454
    7934 
    7935 463 atoms, 494 bonds, 22 residues, 1 model selected 
    7936 
    7937 > select add #10/A:455
    7938 
    7939 485 atoms, 518 bonds, 23 residues, 1 model selected 
    7940 
    7941 > select add #10/A:456
    7942 
    7943 505 atoms, 539 bonds, 24 residues, 1 model selected 
    7944 
    7945 > select add #10/A:457
    7946 
    7947 527 atoms, 563 bonds, 25 residues, 1 model selected 
    7948 
    7949 > select add #10/A:458
    7950 
    7951 547 atoms, 584 bonds, 26 residues, 1 model selected 
    7952 
    7953 > select add #10/A:459
    7954 
    7955 569 atoms, 608 bonds, 27 residues, 1 model selected 
    7956 
    7957 > select add #10/A:460
    7958 
    7959 589 atoms, 629 bonds, 28 residues, 1 model selected 
    7960 
    7961 > select add #10/A:461
    7962 
    7963 609 atoms, 650 bonds, 29 residues, 1 model selected 
    7964 
    7965 > select add #10/A:462
    7966 
    7967 631 atoms, 674 bonds, 30 residues, 1 model selected 
    7968 
    7969 > select add #10/A:463
    7970 
    7971 653 atoms, 698 bonds, 31 residues, 1 model selected 
    7972 
    7973 > select add #10/A:464
    7974 
    7975 675 atoms, 722 bonds, 32 residues, 1 model selected 
    7976 
    7977 > select add #10/A:465
    7978 
    7979 697 atoms, 746 bonds, 33 residues, 1 model selected 
    7980 
    7981 > select add #10/A:466
    7982 
    7983 720 atoms, 771 bonds, 34 residues, 1 model selected 
    7984 
    7985 > select add #10/A:517
    7986 
    7987 740 atoms, 792 bonds, 35 residues, 1 model selected 
    7988 
    7989 > select add #10/A:516
    7990 
    7991 763 atoms, 817 bonds, 36 residues, 1 model selected 
    7992 
    7993 > select add #10/A:515
    7994 
    7995 783 atoms, 838 bonds, 37 residues, 1 model selected 
    7996 
    7997 > select add #10/A:514
    7998 
    7999 805 atoms, 862 bonds, 38 residues, 1 model selected 
    8000 
    8001 > select add #10/A:513
    8002 
    8003 825 atoms, 883 bonds, 39 residues, 1 model selected 
    8004 
    8005 > select add #10/A:512
    8006 
    8007 848 atoms, 908 bonds, 40 residues, 1 model selected 
    8008 
    8009 > select add #10/A:511
    8010 
    8011 871 atoms, 933 bonds, 41 residues, 1 model selected 
    8012 
    8013 > select add #10/A:510
    8014 
    8015 894 atoms, 958 bonds, 42 residues, 1 model selected 
    8016 
    8017 > select add #10/A:468
    8018 
    8019 916 atoms, 982 bonds, 43 residues, 1 model selected 
    8020 
    8021 > select add #10/A:467
    8022 
    8023 936 atoms, 1003 bonds, 44 residues, 1 model selected 
    8024 
    8025 > select add #10/A:509
    8026 
    8027 956 atoms, 1024 bonds, 45 residues, 1 model selected 
    8028 
    8029 > select ~sel & ##selected
    8030 
    8031 11389 atoms, 12765 bonds, 532 residues, 1 model selected 
    8032 
    8033 > delete atoms sel
    8034 
    8035 > delete bonds sel
    8036 
    8037 > show #!2 models
    8038 
    8039 > select clear
    8040 
    8041 > select #10/A:436
    8042 
    8043 20 atoms, 21 bonds, 1 residue, 1 model selected 
    8044 
    8045 > view matrix models #10,1,0,0,231.99,0,1,0,197.46,0,0,1,176.46
    8046 
    8047 > ui mousemode right "rotate selected models"
    8048 
    8049 > view matrix models
    8050 > #10,0.95619,-0.21051,0.20341,231.91,-0.1617,0.1994,0.96648,192.06,-0.24402,-0.95704,0.15663,222.03
    8051 
    8052 > view matrix models
    8053 > #10,0.13962,-0.92043,0.36514,230.68,-0.93395,0.00011977,0.35741,196.97,-0.32901,-0.39092,-0.85961,230.02
    8054 
    8055 > view matrix models
    8056 > #10,0.3683,-0.71928,0.58905,223.82,-0.3955,-0.69462,-0.60091,255.16,0.84139,-0.011656,-0.5403,236.26
    8057 
    8058 > view matrix models
    8059 > #10,0.044075,-0.33159,0.94239,195.55,0.13347,-0.9329,-0.33449,267.08,0.99007,0.14053,0.0031405,220.62
    8060 
    8061 > view matrix models
    8062 > #10,0.23843,-0.5955,0.76716,212.51,-0.17946,-0.80335,-0.56782,262.38,0.95444,-0.0022849,-0.29841,232.07
    8063 
    8064 > ui mousemode right "translate selected models"
    8065 
    8066 > view matrix models
    8067 > #10,0.23843,-0.5955,0.76716,263.23,-0.17946,-0.80335,-0.56782,202.87,0.95444,-0.0022849,-0.29841,257.13
    8068 
    8069 > view matrix models
    8070 > #10,0.23843,-0.5955,0.76716,262.26,-0.17946,-0.80335,-0.56782,208.21,0.95444,-0.0022849,-0.29841,266.36
    8071 
    8072 > view matrix models
    8073 > #10,0.23843,-0.5955,0.76716,263.14,-0.17946,-0.80335,-0.56782,208.51,0.95444,-0.0022849,-0.29841,264.14
    8074 
    8075 > fitmap #10 inMap #2
    8076 
    8077 Fit molecule fold_r_e_model_0.cif (#10) to map
    8078 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 956 atoms 
    8079 average map value = 3.881, steps = 180 
    8080 shifted from previous position = 6.45 
    8081 rotated from previous position = 35.5 degrees 
    8082 atoms outside contour = 474, contour level = 3.0813 
    8083  
    8084 Position of fold_r_e_model_0.cif (#10) relative to
    8085 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    8086 Matrix rotation and translation 
    8087 -0.97275766 0.23177115 -0.00496658 190.83322315 
    8088 -0.15293732 -0.62549220 0.76509456 236.27013058 
    8089 0.17422029 0.74501117 0.64389879 203.37807884 
    8090 Axis -0.04726984 -0.42174824 -0.90547997 
    8091 Axis point 96.79875530 60.27026621 0.00000000 
    8092 Rotation angle (degrees) 167.73500286 
    8093 Shift along axis -292.82194529 
    8094  
    8095 
    8096 > show #!4 models
    8097 
    8098 > show #!7 models
    8099 
    8100 > hide #!2 models
    8101 
    8102 > select #4/C:441
    8103 
    8104 20 atoms, 21 bonds, 1 residue, 1 model selected 
    8105 
    8106 > select subtract #10/A:443
    8107 
    8108 20 atoms, 21 bonds, 1 residue, 1 model selected 
    8109 
    8110 > select add #4/C:443
    8111 
    8112 40 atoms, 42 bonds, 2 residues, 1 model selected 
    8113 
    8114 > select add #4/C:442
    8115 
    8116 62 atoms, 66 bonds, 3 residues, 1 model selected 
    8117 
    8118 > select add #4/C:444
    8119 
    8120 82 atoms, 87 bonds, 4 residues, 1 model selected 
    8121 
    8122 > select add #4/C:445
    8123 
    8124 105 atoms, 112 bonds, 5 residues, 1 model selected 
    8125 
    8126 > select subtract #4/C:445
    8127 
    8128 82 atoms, 87 bonds, 4 residues, 1 model selected 
    8129 
    8130 > select add #4/C:445
    8131 
    8132 105 atoms, 112 bonds, 5 residues, 1 model selected 
    8133 
    8134 > select add #4/C:446
    8135 
    8136 125 atoms, 133 bonds, 6 residues, 1 model selected 
    8137 
    8138 > select add #4/C:447
    8139 
    8140 148 atoms, 158 bonds, 7 residues, 1 model selected 
    8141 
    8142 > select add #4/C:448
    8143 
    8144 168 atoms, 179 bonds, 8 residues, 1 model selected 
    8145 
    8146 > delete atoms sel
    8147 
    8148 > delete bonds sel
    8149 
    8150 > select add #7/A:522
    8151 
    8152 23 atoms, 25 bonds, 1 residue, 1 model selected 
    8153 
    8154 > select add #7/A:521
    8155 
    8156 43 atoms, 46 bonds, 2 residues, 1 model selected 
    8157 
    8158 > select add #7/A:520
    8159 
    8160 63 atoms, 67 bonds, 3 residues, 1 model selected 
    8161 
    8162 > select add #7/A:523
    8163 
    8164 85 atoms, 91 bonds, 4 residues, 1 model selected 
    8165 
    8166 > select add #7/A:524
    8167 
    8168 107 atoms, 115 bonds, 5 residues, 1 model selected 
    8169 
    8170 > select add #7/A:525
    8171 
    8172 127 atoms, 136 bonds, 6 residues, 1 model selected 
    8173 
    8174 > select add #7/A:519
    8175 
    8176 149 atoms, 160 bonds, 7 residues, 1 model selected 
    8177 
    8178 > select add #7/A:193
    8179 
    8180 169 atoms, 181 bonds, 8 residues, 1 model selected 
    8181 
    8182 > select subtract #7/A:193
    8183 
    8184 149 atoms, 160 bonds, 7 residues, 1 model selected 
    8185 
    8186 > select add #7/A:518
    8187 
    8188 172 atoms, 185 bonds, 8 residues, 1 model selected 
    8189 
    8190 > select add #7/A:517
    8191 
    8192 192 atoms, 206 bonds, 9 residues, 1 model selected 
    8193 
    8194 > select add #7/A:516
    8195 
    8196 215 atoms, 231 bonds, 10 residues, 1 model selected 
    8197 
    8198 > select add #7/A:515
    8199 
    8200 235 atoms, 252 bonds, 11 residues, 1 model selected 
    8201 
    8202 > delete atoms sel
    8203 
    8204 > delete bonds sel
    8205 
    8206 > select add #4/C:516
    8207 
    8208 23 atoms, 25 bonds, 1 residue, 1 model selected 
    8209 
    8210 > select add #4/C:515
    8211 
    8212 43 atoms, 46 bonds, 2 residues, 1 model selected 
    8213 
    8214 > select add #4/C:514
    8215 
    8216 65 atoms, 70 bonds, 3 residues, 1 model selected 
    8217 
    8218 > select add #4/C:513
    8219 
    8220 85 atoms, 91 bonds, 4 residues, 1 model selected 
    8221 
    8222 > select add #4/C:512
    8223 
    8224 108 atoms, 116 bonds, 5 residues, 1 model selected 
    8225 
    8226 > select add #4/C:511
    8227 
    8228 131 atoms, 141 bonds, 6 residues, 1 model selected 
    8229 
    8230 > select add #4/C:510
    8231 
    8232 154 atoms, 166 bonds, 7 residues, 1 model selected 
    8233 
    8234 > select add #4/C:509
    8235 
    8236 174 atoms, 187 bonds, 8 residues, 1 model selected 
    8237 
    8238 > select #10/A:449
    8239 
    8240 20 atoms, 21 bonds, 1 residue, 1 model selected 
    8241 
    8242 > select #4/C:439
    8243 
    8244 23 atoms, 25 bonds, 1 residue, 1 model selected 
    8245 
    8246 > select add #10/A:449
    8247 
    8248 43 atoms, 46 bonds, 2 residues, 2 models selected 
    8249 
    8250 > select add #10/A:440
    8251 
    8252 63 atoms, 67 bonds, 3 residues, 2 models selected 
    8253 
    8254 > select subtract #4/C:439@C4'
    8255 
    8256 62 atoms, 64 bonds, 3 residues, 2 models selected 
    8257 
    8258 > select subtract #4/C:439
    8259 
    8260 40 atoms, 42 bonds, 2 residues, 1 model selected 
    8261 
    8262 > select subtract #10/A:440
    8263 
    8264 20 atoms, 21 bonds, 1 residue, 1 model selected 
    8265 
    8266 > select add #4/C:432@N3
    8267 
    8268 21 atoms, 21 bonds, 2 residues, 2 models selected 
    8269 
    8270 > select subtract #4/C:432
    8271 
    8272 20 atoms, 21 bonds, 1 residue, 1 model selected 
    8273 
    8274 > select add #10/A:439
    8275 
    8276 43 atoms, 46 bonds, 2 residues, 1 model selected 
    8277 
    8278 > select add #10/A:450
    8279 
    8280 65 atoms, 70 bonds, 3 residues, 1 model selected 
    8281 
    8282 > hide #!4 models
    8283 
    8284 > select add #10/A:451
    8285 
    8286 88 atoms, 95 bonds, 4 residues, 1 model selected 
    8287 
    8288 > select add #10/A:452
    8289 
    8290 110 atoms, 119 bonds, 5 residues, 1 model selected 
    8291 
    8292 > select add #10/A:453
    8293 
    8294 130 atoms, 140 bonds, 6 residues, 1 model selected 
    8295 
    8296 > select add #10/A:438
    8297 
    8298 152 atoms, 164 bonds, 7 residues, 1 model selected 
    8299 
    8300 > select add #10/A:437
    8301 
    8302 172 atoms, 185 bonds, 8 residues, 1 model selected 
    8303 
    8304 > select add #10/A:436
    8305 
    8306 192 atoms, 206 bonds, 9 residues, 1 model selected 
    8307 
    8308 > select subtract #10/A:436
    8309 
    8310 172 atoms, 185 bonds, 8 residues, 1 model selected 
    8311 
    8312 > select add #10/A:436
    8313 
    8314 192 atoms, 206 bonds, 9 residues, 1 model selected 
    8315 
    8316 > select add #10/A:435
    8317 
    8318 215 atoms, 231 bonds, 10 residues, 1 model selected 
    8319 
    8320 > select add #10/A:434
    8321 
    8322 235 atoms, 252 bonds, 11 residues, 1 model selected 
    8323 
    8324 > select add #10/A:433
    8325 
    8326 255 atoms, 273 bonds, 12 residues, 1 model selected 
    8327 
    8328 > select add #10/A:454
    8329 
    8330 275 atoms, 294 bonds, 13 residues, 1 model selected 
    8331 
    8332 > select add #10/A:455
    8333 
    8334 297 atoms, 318 bonds, 14 residues, 1 model selected 
    8335 
    8336 > select add #10/A:456
    8337 
    8338 317 atoms, 339 bonds, 15 residues, 1 model selected 
    8339 
    8340 > select add #10/A:457
    8341 
    8342 339 atoms, 363 bonds, 16 residues, 1 model selected 
    8343 
    8344 > select add #10/A:517
    8345 
    8346 359 atoms, 384 bonds, 17 residues, 1 model selected 
    8347 
    8348 > select add #10/A:516
    8349 
    8350 382 atoms, 409 bonds, 18 residues, 1 model selected 
    8351 
    8352 > select add #10/A:515
    8353 
    8354 402 atoms, 430 bonds, 19 residues, 1 model selected 
    8355 
    8356 > select add #10/A:514
    8357 
    8358 424 atoms, 454 bonds, 20 residues, 1 model selected 
    8359 
    8360 > select add #10/A:513
    8361 
    8362 444 atoms, 475 bonds, 21 residues, 1 model selected 
    8363 
    8364 > select subtract #10/A:513
    8365 
    8366 424 atoms, 454 bonds, 20 residues, 1 model selected 
    8367 
    8368 > select add #10/A:513
    8369 
    8370 444 atoms, 475 bonds, 21 residues, 1 model selected 
    8371 
    8372 > select add #10/A:510
    8373 
    8374 513 atoms, 500 bonds, 24 residues, 1 model selected 
    8375 
    8376 > select add #10/A:458
    8377 
    8378 533 atoms, 521 bonds, 25 residues, 1 model selected 
    8379 
    8380 > select add #10/A:459
    8381 
    8382 555 atoms, 545 bonds, 26 residues, 1 model selected 
    8383 
    8384 > select add #10/A:460
    8385 
    8386 575 atoms, 566 bonds, 27 residues, 1 model selected 
    8387 
    8388 > select add #10/A:461
    8389 
    8390 595 atoms, 587 bonds, 28 residues, 1 model selected 
    8391 
    8392 > select add #10/A:462
    8393 
    8394 617 atoms, 611 bonds, 29 residues, 1 model selected 
    8395 
    8396 > select add #10/A:463
    8397 
    8398 639 atoms, 635 bonds, 30 residues, 1 model selected 
    8399 
    8400 > select add #10/A:464
    8401 
    8402 661 atoms, 659 bonds, 31 residues, 1 model selected 
    8403 
    8404 > select add #10/A:465
    8405 
    8406 683 atoms, 683 bonds, 32 residues, 1 model selected 
    8407 
    8408 > select add #10/A:466
    8409 
    8410 706 atoms, 708 bonds, 33 residues, 1 model selected 
    8411 
    8412 > select add #10/A:467
    8413 
    8414 726 atoms, 729 bonds, 34 residues, 1 model selected 
    8415 
    8416 > select add #10/A:468
    8417 
    8418 748 atoms, 753 bonds, 35 residues, 1 model selected 
    8419 
    8420 > select add #10/A:509
    8421 
    8422 768 atoms, 774 bonds, 36 residues, 1 model selected 
    8423 
    8424 > delete atoms sel
    8425 
    8426 > delete bonds sel
    8427 
    8428 > show #!2 models
    8429 
    8430 > show #!5 models
    8431 
    8432 > select add #5/C:441
    8433 
    8434 20 atoms, 21 bonds, 1 residue, 1 model selected 
    8435 
    8436 > select add #5/C:440
    8437 
    8438 40 atoms, 42 bonds, 2 residues, 1 model selected 
    8439 
    8440 > delete atoms sel
    8441 
    8442 > delete bonds sel
    8443 
    8444 > select add #5/C:448
    8445 
    8446 20 atoms, 21 bonds, 1 residue, 1 model selected 
    8447 
    8448 > delete atoms sel
    8449 
    8450 > delete bonds sel
    8451 
    8452 > hide #!7 models
    8453 
    8454 > show #!7 models
    8455 
    8456 > hide #!7 models
    8457 
    8458 > show #!7 models
    8459 
    8460 > hide #!7 models
    8461 
    8462 > show #!7 models
    8463 
    8464 > hide #!7 models
    8465 
    8466 > show #!7 models
    8467 
    8468 > hide #!10 models
    8469 
    8470 > show #!10 models
    8471 
    8472 > hide #!10 models
    8473 
    8474 > show #!10 models
    8475 
    8476 > hide #!10 models
    8477 
    8478 > show #!10 models
    8479 
    8480 > hide #!7 models
    8481 
    8482 > hide #!5 models
    8483 
    8484 > show #!5 models
    8485 
    8486 > hide #!5 models
    8487 
    8488 > show #!5 models
    8489 
    8490 > select #5/H:174
    8491 
    8492 23 atoms, 25 bonds, 1 residue, 1 model selected 
    8493 
    8494 > select add #5/H:175
    8495 
    8496 43 atoms, 46 bonds, 2 residues, 1 model selected 
    8497 
    8498 > select add #5/H:176
    8499 
    8500 66 atoms, 71 bonds, 3 residues, 1 model selected 
    8501 
    8502 > select add #5/H:177
    8503 
    8504 89 atoms, 96 bonds, 4 residues, 1 model selected 
    8505 
    8506 > select add #5/H:178
    8507 
    8508 111 atoms, 120 bonds, 5 residues, 1 model selected 
    8509 
    8510 > select add #5/H:179
    8511 
    8512 134 atoms, 145 bonds, 6 residues, 1 model selected 
    8513 
    8514 > select add #5/H:180
    8515 
    8516 154 atoms, 166 bonds, 7 residues, 1 model selected 
    8517 
    8518 > select add #5/H:181
    8519 
    8520 177 atoms, 191 bonds, 8 residues, 1 model selected 
    8521 
    8522 > select add #5/H:182
    8523 
    8524 197 atoms, 212 bonds, 9 residues, 1 model selected 
    8525 
    8526 > select add #5/H:183
    8527 
    8528 219 atoms, 236 bonds, 10 residues, 1 model selected 
    8529 
    8530 > select add #5/H:184
    8531 
    8532 239 atoms, 257 bonds, 11 residues, 1 model selected 
    8533 
    8534 > select add #5/B:186
    8535 
    8536 259 atoms, 278 bonds, 12 residues, 1 model selected 
    8537 
    8538 > select subtract #5/B:186
    8539 
    8540 239 atoms, 257 bonds, 11 residues, 1 model selected 
    8541 
    8542 > select add #5/H:185
    8543 
    8544 261 atoms, 281 bonds, 12 residues, 1 model selected 
    8545 
    8546 > select add #5/H:186
    8547 
    8548 281 atoms, 302 bonds, 13 residues, 1 model selected 
    8549 
    8550 > select add #5/H:187
    8551 
    8552 304 atoms, 327 bonds, 14 residues, 1 model selected 
    8553 
    8554 > select add #5/H:188
    8555 
    8556 326 atoms, 351 bonds, 15 residues, 1 model selected 
    8557 
    8558 > select add #5/H:189
    8559 
    8560 346 atoms, 372 bonds, 16 residues, 1 model selected 
    8561 
    8562 > select add #5/H:190
    8563 
    8564 366 atoms, 393 bonds, 17 residues, 1 model selected 
    8565 
    8566 > select add #5/H:191
    8567 
    8568 388 atoms, 417 bonds, 18 residues, 1 model selected 
    8569 
    8570 > select add #5/H:192
    8571 
    8572 408 atoms, 438 bonds, 19 residues, 1 model selected 
    8573 
    8574 > select add #5/H:193
    8575 
    8576 430 atoms, 462 bonds, 20 residues, 1 model selected 
    8577 
    8578 > select add #5/H:194
    8579 
    8580 452 atoms, 486 bonds, 21 residues, 1 model selected 
    8581 
    8582 > delete atoms sel
    8583 
    8584 > delete bonds sel
    8585 
    8586 > select add #5/H:525
    8587 
    8588 22 atoms, 24 bonds, 1 residue, 1 model selected 
    8589 
    8590 > select add #5/H:524
    8591 
    8592 44 atoms, 48 bonds, 2 residues, 1 model selected 
    8593 
    8594 > select add #5/H:523
    8595 
    8596 67 atoms, 73 bonds, 3 residues, 1 model selected 
    8597 
    8598 > select add #5/H:526
    8599 
    8600 90 atoms, 98 bonds, 4 residues, 1 model selected 
    8601 
    8602 > select add #5/H:527
    8603 
    8604 110 atoms, 119 bonds, 5 residues, 1 model selected 
    8605 
    8606 > select add #5/H:528
    8607 
    8608 132 atoms, 143 bonds, 6 residues, 1 model selected 
    8609 
    8610 > select add #5/H:529
    8611 
    8612 155 atoms, 168 bonds, 7 residues, 1 model selected 
    8613 
    8614 > select add #5/H:530
    8615 
    8616 175 atoms, 189 bonds, 8 residues, 1 model selected 
    8617 
    8618 > select add #5/H:531
    8619 
    8620 198 atoms, 214 bonds, 9 residues, 1 model selected 
    8621 
    8622 > select add #5/H:532
    8623 
    8624 220 atoms, 238 bonds, 10 residues, 1 model selected 
    8625 
    8626 > select add #5/H:533
    8627 
    8628 243 atoms, 263 bonds, 11 residues, 1 model selected 
    8629 
    8630 > select add #5/H:534
    8631 
    8632 263 atoms, 284 bonds, 12 residues, 1 model selected 
    8633 
    8634 > select add #5/H:535
    8635 
    8636 286 atoms, 309 bonds, 13 residues, 1 model selected 
    8637 
    8638 > select add #5/H:536
    8639 
    8640 306 atoms, 330 bonds, 14 residues, 1 model selected 
    8641 
    8642 > select add #5/H:537
    8643 
    8644 329 atoms, 355 bonds, 15 residues, 1 model selected 
    8645 
    8646 > select add #5/H:538
    8647 
    8648 349 atoms, 376 bonds, 16 residues, 1 model selected 
    8649 
    8650 > select add #5/H:539
    8651 
    8652 371 atoms, 400 bonds, 17 residues, 1 model selected 
    8653 
    8654 > select add #5/H:540
    8655 
    8656 391 atoms, 421 bonds, 18 residues, 1 model selected 
    8657 
    8658 > select add #5/H:541
    8659 
    8660 414 atoms, 446 bonds, 19 residues, 1 model selected 
    8661 
    8662 > select add #5/H:542
    8663 
    8664 436 atoms, 470 bonds, 20 residues, 1 model selected 
    8665 
    8666 > select add #5/H:543
    8667 
    8668 458 atoms, 494 bonds, 21 residues, 1 model selected 
    8669 
    8670 > select add #5/H:544
    8671 
    8672 481 atoms, 519 bonds, 22 residues, 1 model selected 
    8673 
    8674 > select add #5/H:545
    8675 
    8676 501 atoms, 540 bonds, 23 residues, 1 model selected 
    8677 
    8678 > delete atoms sel
    8679 
    8680 > delete bonds sel
    8681 
    8682 > combine #5 #10
    8683 
    8684 Remapping chain ID 'A' in fold_r_e_model_0.cif #10 to 'J' 
    8685 
    8686 > hide #!5 models
    8687 
    8688 > hide #!10 models
    8689 
    8690 > hide #!6 models
    8691 
    8692 > show #!6 models
    8693 
    8694 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-10.pdb models
    8695 > #6 relModel #6
    8696 
    8697 > close #5-6
    8698 
    8699 > close #3
    8700 
    8701 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-
    8702 > new-10_real_space_refined_009-coot-0.pdb
    8703 
    8704 Chain information for R-combine-new-10_real_space_refined_009-coot-0.pdb #3 
    8705 --- 
    8706 Chain | Description 
    8707 A | No description available 
    8708 C | No description available 
    8709 D | No description available 
    8710 E | No description available 
    8711 F | No description available 
    8712 G | No description available 
    8713 H | No description available 
    8714 I | No description available 
    8715  
    8716 
    8717 > select #3/I:263@C1'
    8718 
    8719 1 atom, 1 residue, 1 model selected 
    8720 
    8721 > select up
    8722 
    8723 23 atoms, 25 bonds, 1 residue, 1 model selected 
    8724 
    8725 > select up
    8726 
    8727 568 atoms, 638 bonds, 26 residues, 1 model selected 
    8728 
    8729 > select up
    8730 
    8731 12029 atoms, 13466 bonds, 562 residues, 1 model selected 
    8732 
    8733 > style sel stick
    8734 
    8735 Changed 12029 atom styles 
    8736 
    8737 > cartoon sel
    8738 
    8739 > view matrix models #3,1,0,0,-1.9467,0,1,0,-0.10847,0,0,1,7.3482
    8740 
    8741 > show #!2 models
    8742 
    8743 > view matrix models #3,1,0,0,-7.1235,0,1,0,7.0208,0,0,1,10.867
    8744 
    8745 > ui mousemode right "rotate selected models"
    8746 
    8747 > view matrix models
    8748 > #3,0.081361,0.9558,0.28254,-51.333,-0.18653,0.29308,-0.93772,377.82,-0.97907,0.023592,0.20213,383.28
    8749 
    8750 > view matrix models
    8751 > #3,-0.73587,0.67047,0.094661,212.67,-0.014296,0.12438,-0.99213,384.48,-0.67697,-0.73143,-0.081946,520.04
    8752 
    8753 > view matrix models
    8754 > #3,-0.67828,0.73014,-0.082663,227.73,-0.48269,-0.52755,-0.69908,539.31,-0.55403,-0.43427,0.71025,269.5
    8755 
    8756 > view matrix models
    8757 > #3,-0.75581,0.48908,-0.43538,364.17,0.29428,-0.34026,-0.8931,383.9,-0.58494,-0.80314,0.11325,472.23
    8758 
    8759 > view matrix models
    8760 > #3,-0.62216,0.69141,-0.36725,284.28,0.13733,-0.36544,-0.92065,427.31,-0.77075,-0.62323,0.13241,473.85
    8761 
    8762 > ui mousemode right "translate selected models"
    8763 
    8764 > view matrix models
    8765 > #3,-0.62216,0.69141,-0.36725,279.48,0.13733,-0.36544,-0.92065,440.75,-0.77075,-0.62323,0.13241,471.19
    8766 
    8767 > ui mousemode right "rotate selected models"
    8768 
    8769 > view matrix models
    8770 > #3,-0.62945,0.76473,0.13777,158.96,-0.56326,-0.3269,-0.75887,545.5,-0.5353,-0.55527,0.6365,301.06
    8771 
    8772 > view matrix models
    8773 > #3,-0.64716,0.74184,0.17566,158.74,-0.6528,-0.42024,-0.63028,553.8,-0.39375,-0.52256,0.75623,239.68
    8774 
    8775 > ui mousemode right "translate selected models"
    8776 
    8777 > view matrix models
    8778 > #3,-0.64716,0.74184,0.17566,180.45,-0.6528,-0.42024,-0.63028,550.95,-0.39375,-0.52256,0.75623,267.47
    8779 
    8780 > view matrix models
    8781 > #3,-0.64716,0.74184,0.17566,194.29,-0.6528,-0.42024,-0.63028,575.74,-0.39375,-0.52256,0.75623,267.38
    8782 
    8783 > fitmap #3 inMap #2
    8784 
    8785 Fit molecule R-combine-new-10_real_space_refined_009-coot-0.pdb (#3) to map
    8786 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 12029 atoms 
    8787 average map value = 4.84, steps = 336 
    8788 shifted from previous position = 22.5 
    8789 rotated from previous position = 34.3 degrees 
    8790 atoms outside contour = 4982, contour level = 3.0813 
    8791  
    8792 Position of R-combine-new-10_real_space_refined_009-coot-0.pdb (#3) relative
    8793 to cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    8794 Matrix rotation and translation 
    8795 0.99999990 -0.00035549 -0.00029112 0.10616282 
    8796 0.00035558 0.99999990 0.00029033 -0.11892637 
    8797 0.00029102 -0.00029043 0.99999992 0.00255272 
    8798 Axis -0.53422494 -0.53550080 0.65409678 
    8799 Axis point 321.53908086 311.52305706 0.00000000 
    8800 Rotation angle (degrees) 0.03114330 
    8801 Shift along axis 0.00864007 
    8802  
    8803 
    8804 > select #3/H:523
    8805 
    8806 22 atoms, 24 bonds, 1 residue, 1 model selected 
    8807 
    8808 > delete atoms sel
    8809 
    8810 > delete bonds sel
    8811 
    8812 > show #14 models
    8813 
    8814 > hide #!3 models
    8815 
    8816 > ui tool show "Show Sequence Viewer"
    8817 
    8818 > sequence chain #7/A #10/A #11/A #12/A #13/A #14/A #17/B #19/B #15/B
    8819 
    8820 Alignment identifier is 1 
    8821 
    8822 > select #7/A #10/A #11/A #12/A #13/A #14/A #17/B #19/B #15/B
    8823 
    8824 75538 atoms, 84634 bonds, 1 pseudobond, 3530 residues, 10 models selected 
    8825 
    8826 > select clear
    8827 
    8828 > select #11/A:517 #12/A:517 #13/A:517 #14/A:517 #17/B:517 #15/B:517
    8829 
    8830 120 atoms, 126 bonds, 6 residues, 6 models selected 
    8831 
    8832 > select #11/A:517 #12/A:517 #13/A:517 #14/A:517 #17/B:517 #15/B:517
    8833 
    8834 120 atoms, 126 bonds, 6 residues, 6 models selected 
    8835 . [ID: 1] region 9 chains [517] RMSD: 49.750 
    8836  
    8837 
    8838 > select #11/A:517 #12/A:517 #13/A:517 #14/A:517 #17/B:517 #15/B:517
    8839 
    8840 120 atoms, 126 bonds, 6 residues, 6 models selected 
    8841 
    8842 > select #11/A:517-524 #12/A:517-524 #13/A:517-524 #14/A:517-524 #17/B:517-524
    8843 > #15/B:517-524
    8844 
    8845 1032 atoms, 1152 bonds, 48 residues, 6 models selected 
    8846 . [ID: 1] region 9 chains [517-524] RMSD: 54.339 
    8847  
    8848 
    8849 > ui tool show "Model Panel"
    8850 
    8851 > show #13 models
    8852 
    8853 > hide #14 models
    8854 
    8855 > show #12 models
    8856 
    8857 > hide #13 models
    8858 
    8859 > show #11 models
    8860 
    8861 > hide #12 models
    8862 
    8863 > show #!10 models
    8864 
    8865 > hide #11 models
    8866 
    8867 > show #!7 models
    8868 
    8869 > hide #!10 models
    8870 
    8871 > show #15 models
    8872 
    8873 > hide #!7 models
    8874 
    8875 > show #17 models
    8876 
    8877 > hide #15 models
    8878 
    8879 > show #19 models
    8880 
    8881 > hide #17 models
    8882 
    8883 > hide #19 models
    8884 
    8885 > show #13 models
    8886 
    8887 > show #12 models
    8888 
    8889 > hide #13 models
    8890 
    8891 > show #13 models
    8892 
    8893 > hide #12 models
    8894 
    8895 > hide #13 models
    8896 
    8897 > show #12 models
    8898 
    8899 > show #11 models
    8900 
    8901 > hide #12 models
    8902 
    8903 > hide #11 models
    8904 
    8905 > show #12 models
    8906 
    8907 > select ~sel & ##selected
    8908 
    8909 73040 atoms, 81840 bonds, 3416 residues, 6 models selected 
    8910 
    8911 > delete atoms (#12 & sel)
    8912 
    8913 > delete bonds (#12 & sel)
    8914 
    8915 > show #!2 models
    8916 
    8917 Drag select of 8 residues, 16 shapes 
    8918 
    8919 > view matrix models #12,1,0,0,339.47,0,1,0,198.19,0,0,1,142.91
    8920 
    8921 > view matrix models #12,1,0,0,329.64,0,1,0,171.65,0,0,1,274.23
    8922 
    8923 > view matrix models #12,1,0,0,268.48,0,1,0,191.4,0,0,1,273.63
    8924 
    8925 > view matrix models #12,1,0,0,254.32,0,1,0,205.99,0,0,1,243.25
    8926 
    8927 > view matrix models #12,1,0,0,256.09,0,1,0,194.19,0,0,1,241.93
    8928 
    8929 > show #!4 models
    8930 
    8931 > ui mousemode right "rotate selected models"
    8932 
    8933 > view matrix models
    8934 > #12,0.86506,0.26015,0.42894,264.38,-0.49886,0.53646,0.6807,201.64,-0.053031,-0.80283,0.59385,230.13
    8935 
    8936 > view matrix models
    8937 > #12,0.0027527,0.33023,-0.9439,227.29,-0.42437,0.85508,0.29791,195.64,0.90549,0.39974,0.14249,234.92
    8938 
    8939 > view matrix models
    8940 > #12,-0.398,0.041459,-0.91645,222.74,-0.54804,0.79039,0.27376,193.64,0.7357,0.6112,-0.29185,224.91
    8941 
    8942 > view matrix models
    8943 > #12,-0.40336,0.24788,-0.88083,224.12,-0.766,0.43509,0.47322,194.37,0.50054,0.86559,0.014381,229.74
    8944 
    8945 > view matrix models
    8946 > #12,0.18785,-0.07416,-0.97939,226.98,0.27242,-0.95409,0.1245,193.03,-0.94366,-0.2902,-0.15903,207.05
    8947 
    8948 > view matrix models
    8949 > #12,0.91579,0.40036,-0.032223,256.01,0.38936,-0.90459,-0.17354,188.25,-0.098629,0.14638,-0.9843,200.24
    8950 
    8951 > view matrix models
    8952 > #12,0.59239,0.6807,-0.43095,245.39,0.2705,-0.67191,-0.68947,177.14,-0.75888,0.29187,-0.58216,202.31
    8953 
    8954 > ui mousemode right "translate selected models"
    8955 
    8956 > view matrix models
    8957 > #12,0.59239,0.6807,-0.43095,259.12,0.2705,-0.67191,-0.68947,171.34,-0.75888,0.29187,-0.58216,203.74
    8958 
    8959 > ui mousemode right "rotate selected models"
    8960 
    8961 > view matrix models
    8962 > #12,0.52605,0.67282,-0.52018,256.56,0.27622,-0.71365,-0.64374,172.21,-0.80435,0.19495,-0.56126,203.38
    8963 
    8964 > view matrix models
    8965 > #12,0.55762,0.79184,-0.24911,262.92,-0.10892,-0.22771,-0.96762,163.26,-0.82292,0.5667,-0.040724,215.14
    8966 
    8967 > view matrix models
    8968 > #12,0.57908,0.68475,-0.44247,258.76,-0.26099,-0.35847,-0.89632,162.77,-0.77236,0.63452,-0.028872,216.12
    8969 
    8970 > view matrix models
    8971 > #12,0.91978,0.37523,-0.11495,267.85,0.15025,-0.60731,-0.78013,168.43,-0.36254,0.70027,-0.61497,208.37
    8972 
    8973 > view matrix models
    8974 > #12,0.7033,0.30754,-0.64093,254.53,0.039845,-0.91722,-0.39639,174.13,-0.70978,0.25324,-0.65733,202.52
    8975 
    8976 > ui mousemode right "translate selected models"
    8977 
    8978 > view matrix models
    8979 > #12,0.7033,0.30754,-0.64093,246.15,0.039845,-0.91722,-0.39639,178.71,-0.70978,0.25324,-0.65733,202.5
    8980 
    8981 > view matrix models
    8982 > #12,0.7033,0.30754,-0.64093,247.58,0.039845,-0.91722,-0.39639,178.98,-0.70978,0.25324,-0.65733,203.64
    8983 
    8984 > view matrix models
    8985 > #12,0.7033,0.30754,-0.64093,247.78,0.039845,-0.91722,-0.39639,179.33,-0.70978,0.25324,-0.65733,204.16
    8986 
    8987 > view matrix models
    8988 > #12,0.7033,0.30754,-0.64093,248.24,0.039845,-0.91722,-0.39639,178.03,-0.70978,0.25324,-0.65733,205.27
    8989 
    8990 > view matrix models
    8991 > #12,0.7033,0.30754,-0.64093,249.49,0.039845,-0.91722,-0.39639,177.7,-0.70978,0.25324,-0.65733,205.5
    8992 
    8993 > ui mousemode right "rotate selected models"
    8994 
    8995 > view matrix models
    8996 > #12,0.99507,-0.044604,0.088571,266.23,0.068404,-0.33793,-0.93868,168.85,0.0718,0.94011,-0.33321,222.53
    8997 
    8998 > view matrix models
    8999 > #12,0.51867,-0.69356,0.49995,267.56,0.60863,-0.11117,-0.78563,178.35,0.60046,0.71177,0.36446,241.55
    9000 
    9001 > view matrix models
    9002 > #12,0.045011,-0.94431,0.32595,258.18,0.93712,-0.073128,-0.34127,191.03,0.3461,0.32082,0.88164,248.18
    9003 
    9004 > view matrix models
    9005 > #12,-0.062893,-0.97457,0.21507,254.66,0.93873,-0.13094,-0.3188,191.31,0.33885,0.18185,0.9231,248.48
    9006 
    9007 > view matrix models
    9008 > #12,-0.157,-0.98214,0.10366,251.36,0.94634,-0.17963,-0.26864,192.27,0.28247,0.055921,0.95765,248.19
    9009 
    9010 > ui mousemode right "translate selected models"
    9011 
    9012 > view matrix models
    9013 > #12,-0.157,-0.98214,0.10366,246.18,0.94634,-0.17963,-0.26864,190.76,0.28247,0.055921,0.95765,249.79
    9014 
    9015 > view matrix models
    9016 > #12,-0.157,-0.98214,0.10366,246.85,0.94634,-0.17963,-0.26864,190.62,0.28247,0.055921,0.95765,249.75
    9017 
    9018 > view matrix models
    9019 > #12,-0.157,-0.98214,0.10366,245.63,0.94634,-0.17963,-0.26864,191.77,0.28247,0.055921,0.95765,249.16
    9020 
    9021 > fitmap #12 inMap #2
    9022 
    9023 Fit molecule fold_r_e_model_2.cif (#12) to map
    9024 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 172 atoms 
    9025 average map value = 4.951, steps = 120 
    9026 shifted from previous position = 2.01 
    9027 rotated from previous position = 18.8 degrees 
    9028 atoms outside contour = 67, contour level = 3.0813 
    9029  
    9030 Position of fold_r_e_model_2.cif (#12) relative to
    9031 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    9032 Matrix rotation and translation 
    9033 -0.86672413 0.28289916 -0.41080088 204.15446232 
    9034 -0.22996757 -0.95748442 -0.17417952 217.12360180 
    9035 -0.44261068 -0.05649472 0.89493248 240.98896718 
    9036 Axis 0.22324458 0.06034225 -0.97289294 
    9037 Axis point 145.42838977 99.25322946 0.00000000 
    9038 Rotation angle (degrees) 164.71751412 
    9039 Shift along axis -175.77836152 
    9040  
    9041 
    9042 > select #4/H:523
    9043 
    9044 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9045 
    9046 > delete atoms sel
    9047 
    9048 > delete bonds sel
    9049 
    9050 > select #12/A:524
    9051 
    9052 22 atoms, 24 bonds, 1 residue, 1 model selected 
    9053 
    9054 > ui mousemode right "rotate selected models"
    9055 
    9056 > view matrix models
    9057 > #12,-0.064363,-0.99733,-0.034579,244.95,0.97788,-0.056123,-0.20147,192.97,0.19899,-0.046781,0.97888,249.53
    9058 
    9059 > view matrix models
    9060 > #12,0.20028,-0.88782,0.41432,257.37,0.86686,-0.03648,-0.49721,185.76,0.45655,0.45874,0.76231,249.42
    9061 
    9062 > view matrix models
    9063 > #12,0.37851,-0.89878,0.22119,255.14,0.79828,0.19604,-0.56949,184.41,0.46848,0.39213,0.79168,249.9
    9064 
    9065 > ui mousemode right "move picked models"
    9066 
    9067 > ui mousemode right "translate selected models"
    9068 
    9069 > view matrix models
    9070 > #12,0.37851,-0.89878,0.22119,254.73,0.79828,0.19604,-0.56949,184.69,0.46848,0.39213,0.79168,249.4
    9071 
    9072 > view matrix models
    9073 > #12,0.37851,-0.89878,0.22119,254.97,0.79828,0.19604,-0.56949,184.12,0.46848,0.39213,0.79168,249.39
    9074 
    9075 > select #4/H:522
    9076 
    9077 20 atoms, 21 bonds, 1 residue, 1 model selected 
    9078 
    9079 > select add #4/H:521
    9080 
    9081 40 atoms, 42 bonds, 2 residues, 1 model selected 
    9082 
    9083 > select add #4/H:520
    9084 
    9085 63 atoms, 67 bonds, 3 residues, 1 model selected 
    9086 
    9087 > select add #4/H:519
    9088 
    9089 83 atoms, 88 bonds, 4 residues, 1 model selected 
    9090 
    9091 > select add #4/H:518
    9092 
    9093 106 atoms, 113 bonds, 5 residues, 1 model selected 
    9094 
    9095 > select add #4/H:517
    9096 
    9097 126 atoms, 134 bonds, 6 residues, 1 model selected 
    9098 
    9099 > select add #4/H:516
    9100 
    9101 148 atoms, 158 bonds, 7 residues, 1 model selected 
    9102 
    9103 > select add #4/H:514
    9104 
    9105 168 atoms, 179 bonds, 8 residues, 1 model selected 
    9106 
    9107 > select add #4/H:513
    9108 
    9109 190 atoms, 203 bonds, 9 residues, 1 model selected 
    9110 
    9111 > select add #4/H:515
    9112 
    9113 213 atoms, 228 bonds, 10 residues, 1 model selected 
    9114 
    9115 > delete atoms sel
    9116 
    9117 > delete bonds sel
    9118 
    9119 > select clear
    9120 
    9121 > select add #12/A:524
    9122 
    9123 22 atoms, 24 bonds, 1 residue, 1 model selected 
    9124 
    9125 > delete atoms sel
    9126 
    9127 > delete bonds sel
    9128 
    9129 > show #!3 models
    9130 
    9131 > hide #!4 models
    9132 
    9133 > close #4
    9134 
    9135 > select #3/H:518
    9136 
    9137 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9138 
    9139 > select add #3/H:517
    9140 
    9141 43 atoms, 46 bonds, 2 residues, 1 model selected 
    9142 
    9143 > select add #3/H:516
    9144 
    9145 65 atoms, 70 bonds, 3 residues, 1 model selected 
    9146 
    9147 > select add #3/H:515
    9148 
    9149 88 atoms, 95 bonds, 4 residues, 1 model selected 
    9150 
    9151 > select add #3/H:514
    9152 
    9153 108 atoms, 116 bonds, 5 residues, 1 model selected 
    9154 
    9155 > select add #3/H:513
    9156 
    9157 130 atoms, 140 bonds, 6 residues, 1 model selected 
    9158 
    9159 > delete atoms sel
    9160 
    9161 > delete bonds sel
    9162 
    9163 > select #3/E:419
    9164 
    9165 20 atoms, 21 bonds, 1 residue, 1 model selected 
    9166 
    9167 > select add #3/E:418
    9168 
    9169 42 atoms, 45 bonds, 2 residues, 1 model selected 
    9170 
    9171 > select add #3/E:417
    9172 
    9173 64 atoms, 69 bonds, 3 residues, 1 model selected 
    9174 
    9175 > delete atoms sel
    9176 
    9177 > delete bonds sel
    9178 
    9179 > combine #3 #12
    9180 
    9181 Remapping chain ID 'A' in fold_r_e_model_2.cif #12 to 'B' 
    9182 
    9183 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-11.pdb models
    9184 > #4 relModel #4
    9185 
    9186 > hide #12 models
    9187 
    9188 > hide #!4 models
    9189 
    9190 > hide #!3 models
    9191 
    9192 > hide #!2 models
    9193 
    9194 > show #13 models
    9195 
    9196 > select #7/A #10/A #11/A #12/A #13/A #14/A #17/B #19/B #15/B
    9197 
    9198 63343 atoms, 70969 bonds, 1 pseudobond, 2960 residues, 10 models selected 
    9199 
    9200 > select clear
    9201 
    9202 > select #7/A:194 #11/A:194 #13/A:194 #14/A:194 #17/B:194 #15/B:194
    9203 
    9204 132 atoms, 144 bonds, 6 residues, 6 models selected 
    9205 
    9206 > select #7/A:194-195 #11/A:194-195 #13/A:194-195 #14/A:194-195 #17/B:194-195
    9207 > #15/B:194-195
    9208 
    9209 264 atoms, 294 bonds, 12 residues, 6 models selected 
    9210 . [ID: 1] region 9 chains [194-195] RMSD: 231.610 
    9211  
    9212 
    9213 > select #7/A:195 #11/A:195 #13/A:195 #14/A:195 #17/B:195 #15/B:195
    9214 
    9215 132 atoms, 144 bonds, 6 residues, 6 models selected 
    9216 
    9217 > select #7/A:195-198 #11/A:195-216 #13/A:195-216 #14/A:195-216 #17/B:195-216
    9218 > #15/B:195-216
    9219 
    9220 2468 atoms, 2763 bonds, 114 residues, 6 models selected 
    9221 . [ID: 1] region 9 chains [195-216] RMSD: 133.343 
    9222  
    9223 
    9224 > select #7/A:195 #11/A:195 #13/A:195 #14/A:195 #17/B:195 #15/B:195
    9225 
    9226 132 atoms, 144 bonds, 6 residues, 6 models selected 
    9227 
    9228 > select #7/A:195-198 #11/A:195-218 #13/A:195-218 #14/A:195-218 #17/B:195-218
    9229 > #15/B:195-218
    9230 
    9231 2678 atoms, 2998 bonds, 124 residues, 6 models selected 
    9232 . [ID: 1] region 9 chains [195-218] RMSD: 131.279 
    9233  
    9234 
    9235 > show #11 models
    9236 
    9237 > hide #13 models
    9238 
    9239 > show #12 models
    9240 
    9241 > hide #11 models
    9242 
    9243 > show #13 models
    9244 
    9245 > hide #12 models
    9246 
    9247 > show #14 models
    9248 
    9249 > hide #13 models
    9250 
    9251 > show #15 models
    9252 
    9253 > hide #14 models
    9254 
    9255 > select add #15/B:219
    9256 
    9257 2700 atoms, 3022 bonds, 125 residues, 6 models selected 
    9258 
    9259 > select add #15/B:220
    9260 
    9261 2722 atoms, 3046 bonds, 126 residues, 6 models selected 
    9262 
    9263 > select add #15/B:221
    9264 
    9265 2742 atoms, 3067 bonds, 127 residues, 6 models selected 
    9266 
    9267 > select add #15/B:222
    9268 
    9269 2764 atoms, 3091 bonds, 128 residues, 6 models selected 
    9270 
    9271 > select add #15/B:223
    9272 
    9273 2787 atoms, 3116 bonds, 129 residues, 6 models selected 
    9274 
    9275 > select add #15/B:224
    9276 
    9277 2809 atoms, 3140 bonds, 130 residues, 6 models selected 
    9278 
    9279 > select add #15/B:225
    9280 
    9281 2829 atoms, 3161 bonds, 131 residues, 6 models selected 
    9282 
    9283 > select add #15/B:226
    9284 
    9285 2852 atoms, 3186 bonds, 132 residues, 6 models selected 
    9286 
    9287 > select add #15/B:227
    9288 
    9289 2872 atoms, 3207 bonds, 133 residues, 6 models selected 
    9290 
    9291 > select add #15/B:228
    9292 
    9293 2892 atoms, 3228 bonds, 134 residues, 6 models selected 
    9294 
    9295 > select add #15/B:229
    9296 
    9297 2912 atoms, 3249 bonds, 135 residues, 6 models selected 
    9298 
    9299 > select add #15/B:230
    9300 
    9301 2932 atoms, 3270 bonds, 136 residues, 6 models selected 
    9302 
    9303 > select add #15/B:231
    9304 
    9305 2952 atoms, 3291 bonds, 137 residues, 6 models selected 
    9306 
    9307 > select add #15/B:232
    9308 
    9309 2975 atoms, 3316 bonds, 138 residues, 6 models selected 
    9310 
    9311 > select add #15/B:233
    9312 
    9313 2995 atoms, 3337 bonds, 139 residues, 6 models selected 
    9314 
    9315 > select add #15/B:234
    9316 
    9317 3018 atoms, 3362 bonds, 140 residues, 6 models selected 
    9318 
    9319 > select add #15/B:235
    9320 
    9321 3041 atoms, 3387 bonds, 141 residues, 6 models selected 
    9322 
    9323 > select add #15/B:236
    9324 
    9325 3063 atoms, 3411 bonds, 142 residues, 6 models selected 
    9326 
    9327 > select add #15/B:237
    9328 
    9329 3085 atoms, 3435 bonds, 143 residues, 6 models selected 
    9330 
    9331 > select add #15/B:238
    9332 
    9333 3107 atoms, 3459 bonds, 144 residues, 6 models selected 
    9334 
    9335 > select add #15/B:239
    9336 
    9337 3129 atoms, 3483 bonds, 145 residues, 6 models selected 
    9338 
    9339 > select add #15/B:240
    9340 
    9341 3152 atoms, 3508 bonds, 146 residues, 6 models selected 
    9342 
    9343 > select add #15/B:241
    9344 
    9345 3174 atoms, 3532 bonds, 147 residues, 6 models selected 
    9346 
    9347 > select add #15/B:242
    9348 
    9349 3196 atoms, 3556 bonds, 148 residues, 6 models selected 
    9350 
    9351 > select add #15/B:244
    9352 
    9353 3216 atoms, 3577 bonds, 149 residues, 6 models selected 
    9354 
    9355 > select add #15/B:243
    9356 
    9357 3236 atoms, 3598 bonds, 150 residues, 6 models selected 
    9358 
    9359 > select ~sel & ##selected
    9360 
    9361 59467 atoms, 66629 bonds, 1 pseudobond, 2782 residues, 7 models selected 
    9362 
    9363 > delete atoms (#15 & sel)
    9364 
    9365 > delete bonds (#15 & sel)
    9366 
    9367 > show #!2 models
    9368 
    9369 Drag select of 50 residues, 100 shapes 
    9370 
    9371 > view matrix models #15,1,0,0,143.27,0,1,0,276.32,0,0,1,283.04
    9372 
    9373 > view matrix models #15,1,0,0,228.97,0,1,0,242.35,0,0,1,283.29
    9374 
    9375 > ui mousemode right "rotate selected models"
    9376 
    9377 > view matrix models
    9378 > #15,-0.93122,-0.35754,-0.070627,276.27,-0.24588,0.75939,-0.60238,227.29,0.26901,-0.54358,-0.79508,212.65
    9379 
    9380 > view matrix models
    9381 > #15,-0.8632,-0.50333,-0.039196,274.02,-0.41206,0.65755,0.63074,270.68,-0.2917,0.56061,-0.775,239.31
    9382 
    9383 > view matrix models
    9384 > #15,-0.69915,-0.70728,-0.10464,265.44,-0.1885,0.04116,0.98121,269.93,-0.68968,0.70574,-0.1621,271.41
    9385 
    9386 > view matrix models
    9387 > #15,-0.7751,-0.62917,0.057911,273.52,0.0026634,0.088401,0.99608,265.62,-0.63183,0.77222,-0.066844,273.54
    9388 
    9389 > ui mousemode right "translate selected models"
    9390 
    9391 > view matrix models
    9392 > #15,-0.7751,-0.62917,0.057911,222.55,0.0026634,0.088401,0.99608,242.18,-0.63183,0.77222,-0.066844,286.13
    9393 
    9394 > view matrix models
    9395 > #15,-0.7751,-0.62917,0.057911,226.14,0.0026634,0.088401,0.99608,242.21,-0.63183,0.77222,-0.066844,257.12
    9396 
    9397 > view matrix models
    9398 > #15,-0.7751,-0.62917,0.057911,226.37,0.0026634,0.088401,0.99608,230.52,-0.63183,0.77222,-0.066844,265.63
    9399 
    9400 > show #!3 models
    9401 
    9402 > show #!4 models
    9403 
    9404 > hide #!4 models
    9405 
    9406 > show #!4 models
    9407 
    9408 > hide #!4 models
    9409 
    9410 > close #3-4
    9411 
    9412 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-11-coot-0.pdb
    9413 
    9414 Chain information for R-combine-new-11-coot-0.pdb #3 
    9415 --- 
    9416 Chain | Description 
    9417 A | No description available 
    9418 D | No description available 
    9419 F | No description available 
    9420 G | No description available 
    9421 H | No description available 
    9422 I | No description available 
    9423  
    9424 
    9425 > select #3/H:75@C5'
    9426 
    9427 1 atom, 1 residue, 1 model selected 
    9428 
    9429 > select up
    9430 
    9431 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9432 
    9433 > select up
    9434 
    9435 9284 atoms, 10394 bonds, 434 residues, 1 model selected 
    9436 
    9437 > select up
    9438 
    9439 11963 atoms, 13394 bonds, 559 residues, 1 model selected 
    9440 
    9441 > select up
    9442 
    9443 64677 atoms, 72451 bonds, 3023 residues, 16 models selected 
    9444 
    9445 > select up
    9446 
    9447 64677 atoms, 72451 bonds, 3023 residues, 16 models selected 
    9448 
    9449 > select up
    9450 
    9451 64677 atoms, 72451 bonds, 3023 residues, 16 models selected 
    9452 
    9453 > select up
    9454 
    9455 64677 atoms, 72451 bonds, 3023 residues, 16 models selected 
    9456 
    9457 > select up
    9458 
    9459 64677 atoms, 72451 bonds, 3023 residues, 16 models selected 
    9460 
    9461 > select up
    9462 
    9463 64677 atoms, 72451 bonds, 3023 residues, 16 models selected 
    9464 
    9465 > select up
    9466 
    9467 64677 atoms, 72451 bonds, 3023 residues, 16 models selected 
    9468 
    9469 > select up
    9470 
    9471 64677 atoms, 72451 bonds, 3023 residues, 16 models selected 
    9472 
    9473 > select down
    9474 
    9475 11963 atoms, 13394 bonds, 559 residues, 1 model selected 
    9476 
    9477 > style sel stick
    9478 
    9479 Changed 11963 atom styles 
    9480 
    9481 > cartoon sel
    9482 
    9483 > ui mousemode right "rotate selected models"
    9484 
    9485 > view matrix models
    9486 > #3,0.051379,0.72417,0.6877,-82.422,-0.34872,0.65828,-0.66714,279.3,-0.93582,-0.20554,0.28635,387.15
    9487 
    9488 > view matrix models
    9489 > #3,-0.018181,0.99871,-0.047468,39.711,-0.54105,-0.049752,-0.83952,486.97,-0.84079,0.01042,0.54126,272.74
    9490 
    9491 > view matrix models
    9492 > #3,0.078824,0.99587,-0.045109,19.428,-0.55158,0.0058763,-0.8341,477.8,-0.83039,0.090628,0.54977,254.01
    9493 
    9494 > fitmap #3 inMap #2
    9495 
    9496 Fit molecule R-combine-new-11-coot-0.pdb (#3) to map
    9497 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 11963 atoms 
    9498 average map value = 4.789, steps = 324 
    9499 shifted from previous position = 28.7 
    9500 rotated from previous position = 19 degrees 
    9501 atoms outside contour = 4999, contour level = 3.0813 
    9502  
    9503 Position of R-combine-new-11-coot-0.pdb (#3) relative to
    9504 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    9505 Matrix rotation and translation 
    9506 0.99999999 -0.00010067 -0.00003356 0.03298488 
    9507 0.00010067 0.99999999 -0.00005365 -0.00938195 
    9508 0.00003357 0.00005365 1.00000000 -0.03614252 
    9509 Axis 0.45119018 -0.28227184 0.84661091 
    9510 Axis point 129.85978764 386.20271697 0.00000000 
    9511 Rotation angle (degrees) 0.00681316 
    9512 Shift along axis -0.01306793 
    9513  
    9514 
    9515 > select clear
    9516 
    9517 > select #15/B:243
    9518 
    9519 20 atoms, 21 bonds, 1 residue, 1 model selected 
    9520 
    9521 > view matrix models
    9522 > #15,-0.9062,0.076465,0.41589,248.31,0.41477,0.35215,0.83902,216.7,-0.082299,0.93282,-0.35083,242.91
    9523 
    9524 > view matrix models
    9525 > #15,-0.93655,-0.24639,0.24933,240.66,-0.095336,0.86351,0.49523,224.48,-0.33733,0.44004,-0.83221,229.6
    9526 
    9527 > view matrix models
    9528 > #15,-0.96951,0.021282,0.24412,243.97,0.14853,0.8434,0.51635,218.29,-0.1949,0.53686,-0.82085,227
    9529 
    9530 > ui mousemode right "translate selected models"
    9531 
    9532 > view matrix models
    9533 > #15,-0.96951,0.021282,0.24412,232.19,0.14853,0.8434,0.51635,230.07,-0.1949,0.53686,-0.82085,225.32
    9534 
    9535 > ui mousemode right "rotate selected models"
    9536 
    9537 > view matrix models
    9538 > #15,-0.15362,-0.64857,0.7455,219.54,0.61846,0.5253,0.58444,216.32,-0.77065,0.55084,0.32042,278.08
    9539 
    9540 > view matrix models
    9541 > #15,-0.36921,-0.45703,0.8092,229.35,0.6655,0.47774,0.57347,214.22,-0.64868,0.75026,0.12777,270.43
    9542 
    9543 > ui mousemode right "translate selected models"
    9544 
    9545 > view matrix models
    9546 > #15,-0.36921,-0.45703,0.8092,237,0.6655,0.47774,0.57347,220.72,-0.64868,0.75026,0.12777,268.92
    9547 
    9548 > view matrix models
    9549 > #15,-0.36921,-0.45703,0.8092,236.75,0.6655,0.47774,0.57347,228.23,-0.64868,0.75026,0.12777,267.7
    9550 
    9551 > view matrix models
    9552 > #15,-0.36921,-0.45703,0.8092,235.99,0.6655,0.47774,0.57347,225.78,-0.64868,0.75026,0.12777,267.61
    9553 
    9554 > view matrix models
    9555 > #15,-0.36921,-0.45703,0.8092,236.33,0.6655,0.47774,0.57347,228.07,-0.64868,0.75026,0.12777,266.61
    9556 
    9557 > view matrix models
    9558 > #15,-0.36921,-0.45703,0.8092,235.99,0.6655,0.47774,0.57347,227.02,-0.64868,0.75026,0.12777,266.63
    9559 
    9560 > view matrix models
    9561 > #15,-0.36921,-0.45703,0.8092,237.05,0.6655,0.47774,0.57347,226.66,-0.64868,0.75026,0.12777,266.32
    9562 
    9563 > fitmap #15 inMap #2
    9564 
    9565 Fit molecule fold_r_e_m_model_0.cif (#15) to map
    9566 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1076 atoms 
    9567 average map value = 4.02, steps = 248 
    9568 shifted from previous position = 10 
    9569 rotated from previous position = 39.5 degrees 
    9570 atoms outside contour = 502, contour level = 3.0813 
    9571  
    9572 Position of fold_r_e_m_model_0.cif (#15) relative to
    9573 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    9574 Matrix rotation and translation 
    9575 0.59862331 -0.80049940 -0.02916953 185.40712798 
    9576 -0.49221379 -0.39632454 0.77501771 219.34411492 
    9577 -0.63196181 -0.44958602 -0.63126594 195.82380617 
    9578 Axis -0.87515177 0.43077994 0.22031347 
    9579 Axis point 0.00000000 202.22531386 67.63578282 
    9580 Rotation angle (degrees) 135.60089312 
    9581 Shift along axis -24.62770874 
    9582  
    9583 
    9584 > view matrix models
    9585 > #15,-0.6372,-0.19851,0.74469,241.76,0.26478,0.85106,0.45342,241.07,-0.72379,0.4861,-0.48974,242.22
    9586 
    9587 > view matrix models
    9588 > #15,-0.6372,-0.19851,0.74469,245.02,0.26478,0.85106,0.45342,241.58,-0.72379,0.4861,-0.48974,241.58
    9589 
    9590 > ui mousemode right "rotate selected models"
    9591 
    9592 > view matrix models
    9593 > #15,-0.62418,-0.22136,0.74927,244.59,0.26418,0.84273,0.46905,242.02,-0.73526,0.49071,-0.46753,242.65
    9594 
    9595 > view matrix models
    9596 > #15,-0.53771,-0.35056,0.7668,241.55,0.27792,0.78494,0.55374,243.82,-0.79601,0.51086,-0.32464,249.13
    9597 
    9598 > hide #!3 models
    9599 
    9600 > select clear
    9601 
    9602 Drag select of 24 residues, 48 shapes 
    9603 
    9604 > delete atoms sel
    9605 
    9606 > delete bonds sel
    9607 
    9608 Drag select of 2 residues, 4 shapes 
    9609 
    9610 > delete atoms sel
    9611 
    9612 > delete bonds sel
    9613 
    9614 > show #!2 models
    9615 
    9616 > fitmap #15 inMap #2
    9617 
    9618 Fit molecule fold_r_e_m_model_0.cif (#15) to map
    9619 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 518 atoms 
    9620 average map value = 3.975, steps = 168 
    9621 shifted from previous position = 6.13 
    9622 rotated from previous position = 9.54 degrees 
    9623 atoms outside contour = 226, contour level = 3.0813 
    9624  
    9625 Position of fold_r_e_m_model_0.cif (#15) relative to
    9626 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    9627 Matrix rotation and translation 
    9628 0.58162625 -0.80314204 -0.12912695 179.85967399 
    9629 -0.52902395 -0.49404402 0.68996679 210.41378925 
    9630 -0.61793573 -0.33299155 -0.71223034 193.74489505 
    9631 Axis -0.87701237 0.41907019 0.23500953 
    9632 Axis point 0.00000000 184.76005643 80.51979040 
    9633 Rotation angle (degrees) 144.32362317 
    9634 Shift along axis -24.02911449 
    9635  
    9636 
    9637 > ui mousemode right "translate selected models"
    9638 
    9639 > select #15/B:208
    9640 
    9641 20 atoms, 21 bonds, 1 residue, 1 model selected 
    9642 
    9643 > view matrix models
    9644 > #15,-0.66843,-0.29005,0.68489,237.34,0.26644,0.76634,0.58458,244.16,-0.69441,0.57323,-0.43496,245.35
    9645 
    9646 > view matrix models
    9647 > #15,-0.66843,-0.29005,0.68489,236.19,0.26644,0.76634,0.58458,241.5,-0.69441,0.57323,-0.43496,247.27
    9648 
    9649 > view matrix models
    9650 > #15,-0.66843,-0.29005,0.68489,237.51,0.26644,0.76634,0.58458,240.23,-0.69441,0.57323,-0.43496,246.99
    9651 
    9652 > view matrix models
    9653 > #15,-0.66843,-0.29005,0.68489,235.7,0.26644,0.76634,0.58458,242.33,-0.69441,0.57323,-0.43496,246.52
    9654 
    9655 > show #!3 models
    9656 
    9657 > volume #2 level 9.732
    9658 
    9659 > view matrix models
    9660 > #15,-0.66843,-0.29005,0.68489,235.81,0.26644,0.76634,0.58458,242.94,-0.69441,0.57323,-0.43496,246.7
    9661 
    9662 > close #3
    9663 
    9664 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-11-coot-0.pdb
    9665 
    9666 Chain information for R-combine-new-11-coot-0.pdb #3 
    9667 --- 
    9668 Chain | Description 
    9669 A | No description available 
    9670 D | No description available 
    9671 F | No description available 
    9672 G | No description available 
    9673 H | No description available 
    9674 I | No description available 
    9675  
    9676 
    9677 > select #3/H:65@C5'
    9678 
    9679 1 atom, 1 residue, 1 model selected 
    9680 
    9681 > select up
    9682 
    9683 23 atoms, 25 bonds, 1 residue, 1 model selected 
    9684 
    9685 > select up
    9686 
    9687 9306 atoms, 10419 bonds, 435 residues, 1 model selected 
    9688 
    9689 > select up
    9690 
    9691 11985 atoms, 13419 bonds, 560 residues, 1 model selected 
    9692 
    9693 > style sel stick
    9694 
    9695 Changed 11985 atom styles 
    9696 
    9697 > cartoon sel
    9698 
    9699 > volume #2 level 4.005
    9700 
    9701 > ui mousemode right "rotate selected models"
    9702 
    9703 > view matrix models
    9704 > #3,0.28517,0.63069,0.72174,-121.71,-0.69902,0.65205,-0.2936,273.25,-0.65579,-0.42078,0.62681,294.73
    9705 
    9706 > view matrix models
    9707 > #3,-0.63979,0.71414,-0.28402,271.95,-0.61089,-0.69679,-0.37589,521.32,-0.46634,-0.066985,0.88207,135.03
    9708 
    9709 > view matrix models
    9710 > #3,-0.3072,0.95159,-0.010074,99.826,-0.4499,-0.15455,-0.87961,495.7,-0.83858,-0.26568,0.4756,336.71
    9711 
    9712 > ui mousemode right "translate selected models"
    9713 
    9714 > view matrix models
    9715 > #3,-0.3072,0.95159,-0.010074,137.36,-0.4499,-0.15455,-0.87961,506.29,-0.83858,-0.26568,0.4756,353.27
    9716 
    9717 > view matrix models
    9718 > #3,-0.3072,0.95159,-0.010074,132.93,-0.4499,-0.15455,-0.87961,519.12,-0.83858,-0.26568,0.4756,360.7
    9719 
    9720 > view matrix models
    9721 > #3,-0.3072,0.95159,-0.010074,111.09,-0.4499,-0.15455,-0.87961,530.74,-0.83858,-0.26568,0.4756,375.41
    9722 
    9723 > fitmap #3 inMap #2
    9724 
    9725 Fit molecule R-combine-new-11-coot-0.pdb (#3) to map
    9726 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 11985 atoms 
    9727 average map value = 4.998, steps = 172 
    9728 shifted from previous position = 19.5 
    9729 rotated from previous position = 6.38 degrees 
    9730 atoms outside contour = 5324, contour level = 4.005 
    9731  
    9732 Position of R-combine-new-11-coot-0.pdb (#3) relative to
    9733 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    9734 Matrix rotation and translation 
    9735 0.99999999 -0.00003225 -0.00016822 0.03533317 
    9736 0.00003228 0.99999999 0.00014937 -0.02226528 
    9737 0.00016822 -0.00014938 0.99999998 -0.01210345 
    9738 Axis -0.65725665 -0.74017593 0.14196226 
    9739 Axis point 64.83711940 0.00000000 176.97440828 
    9740 Rotation angle (degrees) 0.01302169 
    9741 Shift along axis -0.00846097 
    9742  
    9743 
    9744 > select clear
    9745 
    9746 > volume #2 level 9.239
    9747 
    9748 > show #13 models
    9749 
    9750 > hide #!15 models
    9751 
    9752 > hide #!3 models
    9753 
    9754 > hide #!2 models
    9755 
    9756 > select #13/A:194
    9757 
    9758 22 atoms, 24 bonds, 1 residue, 1 model selected 
    9759 
    9760 > select add #13/A:193
    9761 
    9762 42 atoms, 45 bonds, 2 residues, 1 model selected 
    9763 
    9764 > select add #13/A:526
    9765 
    9766 65 atoms, 70 bonds, 3 residues, 1 model selected 
    9767 
    9768 > select add #13/A:525
    9769 
    9770 85 atoms, 91 bonds, 4 residues, 1 model selected 
    9771 
    9772 > select add #13/A:524
    9773 
    9774 107 atoms, 115 bonds, 5 residues, 1 model selected 
    9775 
    9776 > select add #13/A:523
    9777 
    9778 129 atoms, 139 bonds, 6 residues, 1 model selected 
    9779 
    9780 > select add #13/A:522
    9781 
    9782 152 atoms, 164 bonds, 7 residues, 1 model selected 
    9783 
    9784 > select add #13/A:350
    9785 
    9786 174 atoms, 188 bonds, 8 residues, 1 model selected 
    9787 
    9788 > select subtract #13/A:350
    9789 
    9790 152 atoms, 164 bonds, 7 residues, 1 model selected 
    9791 
    9792 > select add #13/A:521
    9793 
    9794 172 atoms, 185 bonds, 8 residues, 1 model selected 
    9795 
    9796 > select add #13/A:519
    9797 
    9798 194 atoms, 209 bonds, 9 residues, 1 model selected 
    9799 
    9800 > select add #13/A:520
    9801 
    9802 214 atoms, 230 bonds, 10 residues, 1 model selected 
    9803 
    9804 > select add #13/A:199
    9805 
    9806 236 atoms, 254 bonds, 11 residues, 1 model selected 
    9807 
    9808 > select add #13/A:198
    9809 
    9810 256 atoms, 275 bonds, 12 residues, 1 model selected 
    9811 
    9812 > select add #13/A:197
    9813 
    9814 279 atoms, 300 bonds, 13 residues, 1 model selected 
    9815 
    9816 > select add #13/A:196
    9817 
    9818 302 atoms, 325 bonds, 14 residues, 1 model selected 
    9819 
    9820 > select add #13/A:195
    9821 
    9822 324 atoms, 349 bonds, 15 residues, 1 model selected 
    9823 
    9824 > select add #13/A:346
    9825 
    9826 344 atoms, 370 bonds, 16 residues, 1 model selected 
    9827 
    9828 > select add #13/A:345
    9829 
    9830 367 atoms, 395 bonds, 17 residues, 1 model selected 
    9831 
    9832 > select add #13/A:344
    9833 
    9834 390 atoms, 420 bonds, 18 residues, 1 model selected 
    9835 
    9836 > select add #13/A:343
    9837 
    9838 410 atoms, 441 bonds, 19 residues, 1 model selected 
    9839 
    9840 > select add #13/A:342
    9841 
    9842 430 atoms, 462 bonds, 20 residues, 1 model selected 
    9843 
    9844 > select add #13/A:200
    9845 
    9846 450 atoms, 483 bonds, 21 residues, 1 model selected 
    9847 
    9848 > select add #13/A:201
    9849 
    9850 472 atoms, 507 bonds, 22 residues, 1 model selected 
    9851 
    9852 > select add #13/A:341
    9853 
    9854 492 atoms, 528 bonds, 23 residues, 1 model selected 
    9855 
    9856 > select add #13/A:340
    9857 
    9858 512 atoms, 549 bonds, 24 residues, 1 model selected 
    9859 
    9860 > select add #13/A:339
    9861 
    9862 534 atoms, 573 bonds, 25 residues, 1 model selected 
    9863 
    9864 > select add #13/A:202
    9865 
    9866 556 atoms, 597 bonds, 26 residues, 1 model selected 
    9867 
    9868 > select add #13/A:203
    9869 
    9870 579 atoms, 622 bonds, 27 residues, 1 model selected 
    9871 
    9872 > select add #13/A:204
    9873 
    9874 601 atoms, 646 bonds, 28 residues, 1 model selected 
    9875 
    9876 > select add #13/A:205
    9877 
    9878 621 atoms, 667 bonds, 29 residues, 1 model selected 
    9879 
    9880 > select add #13/A:206
    9881 
    9882 641 atoms, 688 bonds, 30 residues, 1 model selected 
    9883 
    9884 > select add #13/A:338
    9885 
    9886 664 atoms, 713 bonds, 31 residues, 1 model selected 
    9887 
    9888 > select add #13/A:337
    9889 
    9890 686 atoms, 737 bonds, 32 residues, 1 model selected 
    9891 
    9892 > select add #13/A:336
    9893 
    9894 709 atoms, 762 bonds, 33 residues, 1 model selected 
    9895 
    9896 > select add #13/A:335
    9897 
    9898 731 atoms, 786 bonds, 34 residues, 1 model selected 
    9899 
    9900 > select add #13/A:334
    9901 
    9902 753 atoms, 810 bonds, 35 residues, 1 model selected 
    9903 
    9904 > select add #13/A:207
    9905 
    9906 773 atoms, 831 bonds, 36 residues, 1 model selected 
    9907 
    9908 > select add #13/A:208
    9909 
    9910 793 atoms, 852 bonds, 37 residues, 1 model selected 
    9911 
    9912 > select add #13/A:209
    9913 
    9914 813 atoms, 873 bonds, 38 residues, 1 model selected 
    9915 
    9916 > select add #13/A:210
    9917 
    9918 836 atoms, 898 bonds, 39 residues, 1 model selected 
    9919 
    9920 > select add #13/A:333
    9921 
    9922 856 atoms, 919 bonds, 40 residues, 1 model selected 
    9923 
    9924 > select add #13/A:211
    9925 
    9926 879 atoms, 944 bonds, 41 residues, 1 model selected 
    9927 
    9928 > select add #13/A:212
    9929 
    9930 902 atoms, 969 bonds, 42 residues, 1 model selected 
    9931 
    9932 > select add #13/A:213
    9933 
    9934 925 atoms, 994 bonds, 43 residues, 1 model selected 
    9935 
    9936 > select add #13/A:214
    9937 
    9938 948 atoms, 1019 bonds, 44 residues, 1 model selected 
    9939 
    9940 > select add #13/A:300
    9941 
    9942 968 atoms, 1040 bonds, 45 residues, 1 model selected 
    9943 
    9944 > select add #13/A:299
    9945 
    9946 988 atoms, 1061 bonds, 46 residues, 1 model selected 
    9947 
    9948 > select add #13/A:298
    9949 
    9950 1008 atoms, 1082 bonds, 47 residues, 1 model selected 
    9951 
    9952 > select add #13/A:297
    9953 
    9954 1028 atoms, 1103 bonds, 48 residues, 1 model selected 
    9955 
    9956 > select add #13/A:296
    9957 
    9958 1050 atoms, 1127 bonds, 49 residues, 1 model selected 
    9959 
    9960 > select add #13/A:295
    9961 
    9962 1073 atoms, 1152 bonds, 50 residues, 1 model selected 
    9963 
    9964 > select add #13/A:294
    9965 
    9966 1095 atoms, 1176 bonds, 51 residues, 1 model selected 
    9967 
    9968 > select add #13/A:293
    9969 
    9970 1117 atoms, 1200 bonds, 52 residues, 1 model selected 
    9971 
    9972 > select add #13/A:216
    9973 
    9974 1137 atoms, 1221 bonds, 53 residues, 1 model selected 
    9975 
    9976 > select add #13/A:215
    9977 
    9978 1159 atoms, 1245 bonds, 54 residues, 1 model selected 
    9979 
    9980 > select add #13/A:217
    9981 
    9982 1181 atoms, 1269 bonds, 55 residues, 1 model selected 
    9983 
    9984 > select add #13/A:218
    9985 
    9986 1201 atoms, 1290 bonds, 56 residues, 1 model selected 
    9987 
    9988 > select add #13/A:219
    9989 
    9990 1223 atoms, 1314 bonds, 57 residues, 1 model selected 
    9991 
    9992 > select add #13/A:292
    9993 
    9994 1245 atoms, 1338 bonds, 58 residues, 1 model selected 
    9995 
    9996 > select add #13/A:291
    9997 
    9998 1267 atoms, 1362 bonds, 59 residues, 1 model selected 
    9999 
    10000 > select add #13/A:290
    10001 
    10002 1287 atoms, 1383 bonds, 60 residues, 1 model selected 
    10003 
    10004 > select add #13/A:301
    10005 
    10006 1307 atoms, 1404 bonds, 61 residues, 1 model selected 
    10007 
    10008 > select add #13/A:302
    10009 
    10010 1327 atoms, 1425 bonds, 62 residues, 1 model selected 
    10011 
    10012 > select add #13/A:303
    10013 
    10014 1347 atoms, 1446 bonds, 63 residues, 1 model selected 
    10015 
    10016 > select add #13/A:304
    10017 
    10018 1367 atoms, 1467 bonds, 64 residues, 1 model selected 
    10019 
    10020 > select add #13/A:305
    10021 
    10022 1390 atoms, 1492 bonds, 65 residues, 1 model selected 
    10023 
    10024 > select add #13/A:306
    10025 
    10026 1412 atoms, 1516 bonds, 66 residues, 1 model selected 
    10027 
    10028 > select add #13/A:307
    10029 
    10030 1432 atoms, 1537 bonds, 67 residues, 1 model selected 
    10031 
    10032 > select add #13/A:332
    10033 
    10034 1454 atoms, 1561 bonds, 68 residues, 1 model selected 
    10035 
    10036 > select add #13/A:331
    10037 
    10038 1476 atoms, 1585 bonds, 69 residues, 1 model selected 
    10039 
    10040 > select add #13/A:330
    10041 
    10042 1496 atoms, 1606 bonds, 70 residues, 1 model selected 
    10043 
    10044 > select add #13/A:329
    10045 
    10046 1516 atoms, 1627 bonds, 71 residues, 1 model selected 
    10047 
    10048 > select add #13/A:328
    10049 
    10050 1536 atoms, 1648 bonds, 72 residues, 1 model selected 
    10051 
    10052 > select add #13/A:327
    10053 
    10054 1559 atoms, 1673 bonds, 73 residues, 1 model selected 
    10055 
    10056 > select add #13/A:326
    10057 
    10058 1582 atoms, 1698 bonds, 74 residues, 1 model selected 
    10059 
    10060 > select add #13/A:325
    10061 
    10062 1605 atoms, 1723 bonds, 75 residues, 1 model selected 
    10063 
    10064 > select add #13/A:324
    10065 
    10066 1625 atoms, 1744 bonds, 76 residues, 1 model selected 
    10067 
    10068 > select add #13/A:323
    10069 
    10070 1647 atoms, 1768 bonds, 77 residues, 1 model selected 
    10071 
    10072 > select add #13/A:322
    10073 
    10074 1667 atoms, 1789 bonds, 78 residues, 1 model selected 
    10075 
    10076 > select add #13/A:321
    10077 
    10078 1689 atoms, 1813 bonds, 79 residues, 1 model selected 
    10079 
    10080 > select add #13/A:320
    10081 
    10082 1711 atoms, 1837 bonds, 80 residues, 1 model selected 
    10083 
    10084 > select add #13/A:319
    10085 
    10086 1733 atoms, 1861 bonds, 81 residues, 1 model selected 
    10087 
    10088 > select add #13/A:318
    10089 
    10090 1756 atoms, 1886 bonds, 82 residues, 1 model selected 
    10091 
    10092 > select add #13/A:317
    10093 
    10094 1778 atoms, 1910 bonds, 83 residues, 1 model selected 
    10095 
    10096 > select add #13/A:316
    10097 
    10098 1798 atoms, 1931 bonds, 84 residues, 1 model selected 
    10099 
    10100 > select add #13/A:315
    10101 
    10102 1820 atoms, 1955 bonds, 85 residues, 1 model selected 
    10103 
    10104 > select add #13/A:314
    10105 
    10106 1840 atoms, 1976 bonds, 86 residues, 1 model selected 
    10107 
    10108 > select add #13/A:313
    10109 
    10110 1860 atoms, 1997 bonds, 87 residues, 1 model selected 
    10111 
    10112 > select add #13/A:312
    10113 
    10114 1882 atoms, 2021 bonds, 88 residues, 1 model selected 
    10115 
    10116 > select add #13/A:311
    10117 
    10118 1904 atoms, 2045 bonds, 89 residues, 1 model selected 
    10119 
    10120 > select add #13/A:310
    10121 
    10122 1927 atoms, 2070 bonds, 90 residues, 1 model selected 
    10123 
    10124 > select add #13/A:309
    10125 
    10126 1949 atoms, 2094 bonds, 91 residues, 1 model selected 
    10127 
    10128 > select add #13/A:308
    10129 
    10130 1972 atoms, 2119 bonds, 92 residues, 1 model selected 
    10131 
    10132 > select ~sel & ##selected
    10133 
    10134 10373 atoms, 11624 bonds, 485 residues, 1 model selected 
    10135 
    10136 > delete atoms sel
    10137 
    10138 > delete bonds sel
    10139 
    10140 > show #!2 models
    10141 
    10142 > show #!3 models
    10143 
    10144 Drag select of 92 residues, 2 pseudobonds, 184 shapes 
    10145 
    10146 > select clear
    10147 
    10148 Drag select of 92 residues, 2 pseudobonds, 184 shapes 
    10149 
    10150 > view matrix models #13,1,0,0,71.27,0,1,0,378.15,0,0,1,74.179
    10151 
    10152 > view matrix models #13,1,0,0,229.58,0,1,0,452.18,0,0,1,209.56
    10153 
    10154 > view matrix models #13,1,0,0,177.6,0,1,0,231.58,0,0,1,199.25
    10155 
    10156 > ui mousemode right "rotate selected models"
    10157 
    10158 > view matrix models
    10159 > #13,0.53068,0.2509,0.80958,170.51,-0.53517,0.83988,0.090517,233.79,-0.65724,-0.4813,0.57998,208.59
    10160 
    10161 > view matrix models
    10162 > #13,0.43063,0.35563,0.82951,173.37,-0.34777,0.91351,-0.2111,239.4,-0.83284,-0.19757,0.51706,217.7
    10163 
    10164 > view matrix models
    10165 > #13,-0.12806,0.96437,0.23151,206.51,0.6934,0.25396,-0.67432,222.82,-0.70908,0.074176,-0.70121,249.16
    10166 
    10167 > view matrix models
    10168 > #13,-0.70681,0.40963,-0.57674,221.61,0.45142,-0.36654,-0.81356,217.33,-0.54465,-0.83538,0.074159,212.37
    10169 
    10170 > view matrix models
    10171 > #13,-0.65088,0.63602,-0.41453,221.43,-0.28992,-0.71288,-0.63855,216.39,-0.70164,-0.29544,0.64839,211.67
    10172 
    10173 > view matrix models
    10174 > #13,-0.11064,0.83784,-0.53458,220.46,0.23952,-0.49955,-0.83251,217.35,-0.96457,-0.22016,-0.14541,234.59
    10175 
    10176 > view matrix models
    10177 > #13,0.22307,0.49324,-0.84081,216.09,0.95865,-0.26739,0.097475,190.87,-0.17674,-0.82778,-0.53249,220.9
    10178 
    10179 > view matrix models
    10180 > #13,0.28919,0.60789,-0.73949,215.08,0.9022,0.085155,0.42282,190.94,0.32,-0.78944,-0.52381,214.71
    10181 
    10182 > ui mousemode right "translate selected models"
    10183 
    10184 > view matrix models
    10185 > #13,0.28919,0.60789,-0.73949,217.45,0.9022,0.085155,0.42282,175.34,0.32,-0.78944,-0.52381,223.09
    10186 
    10187 > ui mousemode right "rotate selected models"
    10188 
    10189 > view matrix models
    10190 > #13,-0.11525,0.53673,-0.83585,223.71,0.44779,-0.72303,-0.52603,187.48,-0.88668,-0.43491,-0.15702,237.84
    10191 
    10192 > view matrix models
    10193 > #13,-0.40635,0.55921,-0.72261,225.64,-0.34614,-0.82611,-0.44467,194.77,-0.84562,0.069434,0.52926,231.29
    10194 
    10195 > view matrix models
    10196 > #13,-0.4065,0.75592,-0.51316,224.74,-0.85933,-0.5071,-0.066278,199.41,-0.31033,0.41403,0.85573,223.52
    10197 
    10198 > ui mousemode right "translate selected models"
    10199 
    10200 > view matrix models
    10201 > #13,-0.4065,0.75592,-0.51316,236.42,-0.85933,-0.5071,-0.066278,199.21,-0.31033,0.41403,0.85573,218.33
    10202 
    10203 > view matrix models
    10204 > #13,-0.4065,0.75592,-0.51316,241.71,-0.85933,-0.5071,-0.066278,209.27,-0.31033,0.41403,0.85573,228.78
    10205 
    10206 > fitmap #13 inMap #2
    10207 
    10208 Fit molecule fold_r_e_model_3.cif (#13) to map
    10209 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1972 atoms 
    10210 average map value = 2.914, steps = 128 
    10211 shifted from previous position = 3.58 
    10212 rotated from previous position = 14.3 degrees 
    10213 atoms outside contour = 1820, contour level = 9.2394 
    10214  
    10215 Position of fold_r_e_model_3.cif (#13) relative to
    10216 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    10217 Matrix rotation and translation 
    10218 0.69678775 -0.18347612 -0.69341427 213.02952633 
    10219 -0.44626107 0.64595376 -0.61935030 215.79148867 
    10220 0.56154954 0.74099950 0.36821442 211.19975463 
    10221 Axis 0.72770521 -0.67133005 -0.14057412 
    10222 Axis point 0.00000000 -1.54843213 328.12780390 
    10223 Rotation angle (degrees) 69.17725945 
    10224 Shift along axis -19.53383584 
    10225  
    10226 
    10227 > view matrix models
    10228 > #13,-0.59057,0.68723,-0.42302,240.98,-0.79117,-0.59634,0.13575,205.92,-0.15898,0.41485,0.89589,226.95
    10229 
    10230 > view matrix models
    10231 > #13,-0.59057,0.68723,-0.42302,245.13,-0.79117,-0.59634,0.13575,204.34,-0.15898,0.41485,0.89589,221.57
    10232 
    10233 > view matrix models
    10234 > #13,-0.59057,0.68723,-0.42302,249.4,-0.79117,-0.59634,0.13575,206.01,-0.15898,0.41485,0.89589,218.92
    10235 
    10236 > view matrix models
    10237 > #13,-0.59057,0.68723,-0.42302,249.41,-0.79117,-0.59634,0.13575,205.98,-0.15898,0.41485,0.89589,218.97
    10238 
    10239 > view matrix models
    10240 > #13,-0.59057,0.68723,-0.42302,247.57,-0.79117,-0.59634,0.13575,204.96,-0.15898,0.41485,0.89589,223.81
    10241 
    10242 > ui mousemode right "rotate selected models"
    10243 
    10244 > view matrix models
    10245 > #13,-0.34473,0.55016,-0.76058,249.36,-0.62285,-0.74025,-0.25315,208.8,-0.70229,0.38646,0.59786,237.11
    10246 
    10247 > ui mousemode right "translate selected models"
    10248 
    10249 > view matrix models
    10250 > #13,-0.34473,0.55016,-0.76058,250.03,-0.62285,-0.74025,-0.25315,209.89,-0.70229,0.38646,0.59786,236.15
    10251 
    10252 > view matrix models
    10253 > #13,-0.34473,0.55016,-0.76058,250.38,-0.62285,-0.74025,-0.25315,210.51,-0.70229,0.38646,0.59786,235.62
    10254 
    10255 > view matrix models
    10256 > #13,-0.34473,0.55016,-0.76058,250.22,-0.62285,-0.74025,-0.25315,211.24,-0.70229,0.38646,0.59786,235.12
    10257 
    10258 > hide #!3 models
    10259 
    10260 > select clear
    10261 
    10262 > select #13/A:526
    10263 
    10264 23 atoms, 25 bonds, 1 residue, 1 model selected 
    10265 
    10266 > select add #13/A:525
    10267 
    10268 43 atoms, 46 bonds, 2 residues, 1 model selected 
    10269 
    10270 > select add #13/A:524
    10271 
    10272 65 atoms, 70 bonds, 3 residues, 1 model selected 
    10273 
    10274 > select add #13/A:523
    10275 
    10276 87 atoms, 94 bonds, 4 residues, 1 model selected 
    10277 
    10278 > select add #13/A:522
    10279 
    10280 110 atoms, 119 bonds, 5 residues, 1 model selected 
    10281 
    10282 > select add #13/A:520
    10283 
    10284 150 atoms, 140 bonds, 7 residues, 1 model selected 
    10285 
    10286 > select add #13/A:519
    10287 
    10288 172 atoms, 164 bonds, 8 residues, 1 model selected 
    10289 
    10290 > delete atoms sel
    10291 
    10292 > delete bonds sel
    10293 
    10294 > show #!2 models
    10295 
    10296 > ui mousemode right "translate selected models"
    10297 
    10298 > fitmap #13 inMap #2
    10299 
    10300 Fit molecule fold_r_e_model_3.cif (#13) to map
    10301 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1800 atoms 
    10302 average map value = 2.682, steps = 120 
    10303 shifted from previous position = 1.67 
    10304 rotated from previous position = 18.8 degrees 
    10305 atoms outside contour = 1679, contour level = 9.2394 
    10306  
    10307 Position of fold_r_e_model_3.cif (#13) relative to
    10308 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    10309 Matrix rotation and translation 
    10310 0.95202829 -0.01671453 -0.30555319 206.44337987 
    10311 -0.28928621 0.27641526 -0.91646500 221.51639412 
    10312 0.09977785 0.96089293 0.25831986 218.77734156 
    10313 Axis 0.96777953 -0.20894848 -0.14051092 
    10314 Axis point 0.00000000 -23.27751178 288.07572905 
    10315 Rotation angle (degrees) 75.91378230 
    10316 Shift along axis 122.76555778 
    10317  
    10318 
    10319 > select add #13/A:194
    10320 
    10321 22 atoms, 24 bonds, 1 residue, 1 model selected 
    10322 
    10323 > select subtract #13/A:194
    10324 
    10325 Nothing selected 
    10326 
    10327 > select add #13/A:193
    10328 
    10329 20 atoms, 21 bonds, 1 residue, 1 model selected 
    10330 
    10331 > delete atoms sel
    10332 
    10333 > delete bonds sel
    10334 
    10335 > fitmap #13 inMap #2
    10336 
    10337 Fit molecule fold_r_e_model_3.cif (#13) to map
    10338 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1780 atoms 
    10339 average map value = 2.684, steps = 40 
    10340 shifted from previous position = 0.2 
    10341 rotated from previous position = 0.353 degrees 
    10342 atoms outside contour = 1658, contour level = 9.2394 
    10343  
    10344 Position of fold_r_e_model_3.cif (#13) relative to
    10345 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    10346 Matrix rotation and translation 
    10347 0.95022872 -0.01523710 -0.31118035 206.65061815 
    10348 -0.29497918 0.27743104 -0.91434091 221.37071479 
    10349 0.10026299 0.96062472 0.25912831 218.74496789 
    10350 Axis 0.96654938 -0.21210005 -0.14420773 
    10351 Axis point 0.00000000 -23.29734571 288.64483855 
    10352 Rotation angle (degrees) 75.91305403 
    10353 Shift along axis 121.24057201 
    10354  
    10355 
    10356 > select #13/A:345
    10357 
    10358 23 atoms, 25 bonds, 1 residue, 1 model selected 
    10359 
    10360 > view matrix models
    10361 > #13,-0.51589,0.29366,-0.80475,248.47,-0.55888,-0.82733,0.05637,197.77,-0.64925,0.47884,0.59093,234.13
    10362 
    10363 > ui mousemode right "rotate selected models"
    10364 
    10365 > view matrix models
    10366 > #13,-0.31452,0.088013,-0.94516,243.63,-0.44297,-0.89424,0.064135,194.31,-0.83956,0.43885,0.32025,241.76
    10367 
    10368 > view matrix models
    10369 > #13,-0.30985,0.40243,-0.86142,249.77,-0.34383,-0.89212,-0.2931,200.92,-0.88644,0.20537,0.41479,234.33
    10370 
    10371 > view matrix models
    10372 > #13,-0.77013,0.5129,-0.37925,247.98,-0.61395,-0.75733,0.22253,196.52,-0.17308,0.40422,0.89814,218.85
    10373 
    10374 > view matrix models
    10375 > #13,-0.67804,-0.13835,-0.72189,238.14,-0.30462,-0.84092,0.44728,185.01,-0.66893,0.52317,0.52803,237.14
    10376 
    10377 > ui mousemode right "translate selected models"
    10378 
    10379 > view matrix models
    10380 > #13,-0.67804,-0.13835,-0.72189,245.18,-0.30462,-0.84092,0.44728,191.27,-0.66893,0.52317,0.52803,248.09
    10381 
    10382 > view matrix models
    10383 > #13,-0.67804,-0.13835,-0.72189,249.59,-0.30462,-0.84092,0.44728,193.71,-0.66893,0.52317,0.52803,240.34
    10384 
    10385 > view matrix models
    10386 > #13,-0.67804,-0.13835,-0.72189,246.5,-0.30462,-0.84092,0.44728,191.29,-0.66893,0.52317,0.52803,238.67
    10387 
    10388 > ui mousemode right "rotate selected models"
    10389 
    10390 > view matrix models
    10391 > #13,-0.70104,-0.014048,-0.71298,249.83,-0.20116,-0.95531,0.21661,192.19,-0.68416,0.29528,0.66688,229.86
    10392 
    10393 > view matrix models
    10394 > #13,-0.46429,-0.073513,-0.88263,248.77,-0.091551,-0.98723,0.13038,191.76,-0.88094,0.14134,0.45163,233.52
    10395 
    10396 > ui mousemode right "translate selected models"
    10397 
    10398 > view matrix models
    10399 > #13,-0.46429,-0.073513,-0.88263,249.99,-0.091551,-0.98723,0.13038,191.11,-0.88094,0.14134,0.45163,233.91
    10400 
    10401 > view matrix models
    10402 > #13,-0.46429,-0.073513,-0.88263,249.11,-0.091551,-0.98723,0.13038,191.03,-0.88094,0.14134,0.45163,234.07
    10403 
    10404 > view matrix models
    10405 > #13,-0.46429,-0.073513,-0.88263,248.67,-0.091551,-0.98723,0.13038,193.02,-0.88094,0.14134,0.45163,234.1
    10406 
    10407 > view matrix models
    10408 > #13,-0.46429,-0.073513,-0.88263,251.38,-0.091551,-0.98723,0.13038,190.55,-0.88094,0.14134,0.45163,233.88
    10409 
    10410 > view matrix models
    10411 > #13,-0.46429,-0.073513,-0.88263,250.17,-0.091551,-0.98723,0.13038,189.64,-0.88094,0.14134,0.45163,234.33
    10412 
    10413 > view matrix models
    10414 > #13,-0.46429,-0.073513,-0.88263,250.45,-0.091551,-0.98723,0.13038,189.27,-0.88094,0.14134,0.45163,234.4
    10415 
    10416 > view matrix models
    10417 > #13,-0.46429,-0.073513,-0.88263,247.74,-0.091551,-0.98723,0.13038,193.53,-0.88094,0.14134,0.45163,234.35
    10418 
    10419 > view matrix models
    10420 > #13,-0.46429,-0.073513,-0.88263,247.69,-0.091551,-0.98723,0.13038,192.24,-0.88094,0.14134,0.45163,236.24
    10421 
    10422 > ui mousemode right "rotate selected models"
    10423 
    10424 > view matrix models
    10425 > #13,-0.55082,0.82882,-0.098248,254.07,-0.83218,-0.53637,0.14069,213.53,0.063911,0.15925,0.98517,211.78
    10426 
    10427 > view matrix models
    10428 > #13,0.75944,0.58883,-0.27664,233.75,0.23729,0.14523,0.96052,197.79,0.60576,-0.79511,-0.02943,202.51
    10429 
    10430 > view matrix models
    10431 > #13,0.74537,0.30701,-0.59175,233.99,0.60394,0.064861,0.79438,194.36,0.28227,-0.94949,-0.13707,205.64
    10432 
    10433 > view matrix models
    10434 > #13,0.76721,0.20518,-0.60769,231.44,0.61893,0.01172,0.78536,192.99,0.16826,-0.97865,-0.118,206.11
    10435 
    10436 > ui mousemode right "translate selected models"
    10437 
    10438 > view matrix models
    10439 > #13,0.76721,0.20518,-0.60769,229.61,0.61893,0.01172,0.78536,179.46,0.16826,-0.97865,-0.118,229.88
    10440 
    10441 > view matrix models
    10442 > #13,0.76721,0.20518,-0.60769,234.27,0.61893,0.01172,0.78536,182,0.16826,-0.97865,-0.118,226.23
    10443 
    10444 > view matrix models
    10445 > #13,0.76721,0.20518,-0.60769,234.91,0.61893,0.01172,0.78536,182.71,0.16826,-0.97865,-0.118,224.35
    10446 
    10447 > fitmap #13 inMap #2
    10448 
    10449 Fit molecule fold_r_e_model_3.cif (#13) to map
    10450 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1780 atoms 
    10451 average map value = 3.923, steps = 180 
    10452 shifted from previous position = 10.3 
    10453 rotated from previous position = 27.4 degrees 
    10454 atoms outside contour = 1575, contour level = 9.2394 
    10455  
    10456 Position of fold_r_e_model_3.cif (#13) relative to
    10457 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    10458 Matrix rotation and translation 
    10459 -0.77586550 0.61155697 0.15501870 225.53201454 
    10460 0.21548834 0.48781302 -0.84593335 225.40021407 
    10461 -0.59295658 -0.62292578 -0.51026069 233.77049547 
    10462 Axis 0.25479180 0.85458071 -0.45251845 
    10463 Axis point 119.48574199 0.00000000 151.11263225 
    10464 Rotation angle (degrees) 154.04742428 
    10465 Shift along axis 144.30092008 
    10466  
    10467 
    10468 > volume #2 level 7.577
    10469 
    10470 > hide #!13 models
    10471 
    10472 > show #!3 models
    10473 
    10474 > volume #2 style mesh
    10475 
    10476 > show #!13 models
    10477 
    10478 > hide #!3 models
    10479 
    10480 > view matrix models
    10481 > #13,0.38547,0.30994,-0.86911,247.92,0.88664,0.1364,0.44189,179.24,0.2555,-0.94092,-0.22222,227.07
    10482 
    10483 > open
    10484 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_1a1_dna/fold_1a1_dna_model_0.cif
    10485 
    10486 Chain information for fold_1a1_dna_model_0.cif #4 
    10487 --- 
    10488 Chain | Description 
    10489 A | . 
    10490 B | . 
    10491  
    10492 
    10493 > open
    10494 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_1a1_dna/fold_1a1_dna_model_1.cif
    10495 
    10496 Chain information for fold_1a1_dna_model_1.cif #5 
    10497 --- 
    10498 Chain | Description 
    10499 A | . 
    10500 B | . 
    10501  
    10502 
    10503 > open
    10504 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_1a1_dna/fold_1a1_dna_model_2.cif
    10505 
    10506 Chain information for fold_1a1_dna_model_2.cif #6 
    10507 --- 
    10508 Chain | Description 
    10509 A | . 
    10510 B | . 
    10511  
    10512 
    10513 > open
    10514 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_1a1_dna/fold_1a1_dna_model_3.cif
    10515 
    10516 Chain information for fold_1a1_dna_model_3.cif #8 
    10517 --- 
    10518 Chain | Description 
    10519 A | . 
    10520 B | . 
    10521  
    10522 
    10523 > open
    10524 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_1a1_dna/fold_1a1_dna_model_4.cif
    10525 
    10526 Chain information for fold_1a1_dna_model_4.cif #9 
    10527 --- 
    10528 Chain | Description 
    10529 A | . 
    10530 B | . 
    10531  
    10532 
    10533 > hide #!2 models
    10534 
    10535 > hide #!13 models
    10536 
    10537 > hide #5 models
    10538 
    10539 > hide #6 models
    10540 
    10541 > hide #8 models
    10542 
    10543 > hide #9 models
    10544 
    10545 > show #5 models
    10546 
    10547 > hide #4 models
    10548 
    10549 > show #6 models
    10550 
    10551 > hide #5 models
    10552 
    10553 > hide #6 models
    10554 
    10555 > show #8 models
    10556 
    10557 > hide #8 models
    10558 
    10559 > show #9 models
    10560 
    10561 > hide #9 models
    10562 
    10563 > close #8-9
    10564 
    10565 > close #4-6
    10566 
    10567 > open
    10568 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_1up1_dna/fold_1up1_dna_model_0.cif
    10569 
    10570 Chain information for fold_1up1_dna_model_0.cif #4 
    10571 --- 
    10572 Chain | Description 
    10573 A | . 
    10574 B | . 
    10575  
    10576 
    10577 > open
    10578 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_1up1_dna/fold_1up1_dna_model_1.cif
    10579 
    10580 Chain information for fold_1up1_dna_model_1.cif #5 
    10581 --- 
    10582 Chain | Description 
    10583 A | . 
    10584 B | . 
    10585  
    10586 
    10587 > open
    10588 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_1up1_dna/fold_1up1_dna_model_2.cif
    10589 
    10590 Chain information for fold_1up1_dna_model_2.cif #6 
    10591 --- 
    10592 Chain | Description 
    10593 A | . 
    10594 B | . 
    10595  
    10596 
    10597 > open
    10598 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_1up1_dna/fold_1up1_dna_model_3.cif
    10599 
    10600 Chain information for fold_1up1_dna_model_3.cif #8 
    10601 --- 
    10602 Chain | Description 
    10603 A | . 
    10604 B | . 
    10605  
    10606 
    10607 > open
    10608 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_1up1_dna/fold_1up1_dna_model_4.cif
    10609 
    10610 Chain information for fold_1up1_dna_model_4.cif #9 
    10611 --- 
    10612 Chain | Description 
    10613 A | . 
    10614 B | . 
    10615  
    10616 
    10617 > hide #5 models
    10618 
    10619 > hide #6 models
    10620 
    10621 > hide #8 models
    10622 
    10623 > hide #9 models
    10624 
    10625 > show #5 models
    10626 
    10627 > hide #4 models
    10628 
    10629 > show #6 models
    10630 
    10631 > hide #5 models
    10632 
    10633 > hide #6 models
    10634 
    10635 > show #8 models
    10636 
    10637 > show #9 models
    10638 
    10639 > hide #8 models
    10640 
    10641 > hide #9 models
    10642 
    10643 > close #8-9
    10644 
    10645 > close #4-6
    10646 
    10647 > open
    10648 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_2a1_2dna/fold_2a1_2dna_model_0.cif
    10649 
    10650 Chain information for fold_2a1_2dna_model_0.cif #4 
    10651 --- 
    10652 Chain | Description 
    10653 A B | . 
    10654 C D | . 
    10655  
    10656 
    10657 > open
    10658 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_2a1_2dna/fold_2a1_2dna_model_1.cif
    10659 
    10660 Chain information for fold_2a1_2dna_model_1.cif #5 
    10661 --- 
    10662 Chain | Description 
    10663 A B | . 
    10664 C D | . 
    10665  
    10666 
    10667 > open
    10668 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_2a1_2dna/fold_2a1_2dna_model_2.cif
    10669 
    10670 Chain information for fold_2a1_2dna_model_2.cif #6 
    10671 --- 
    10672 Chain | Description 
    10673 A B | . 
    10674 C D | . 
    10675  
    10676 
    10677 > open
    10678 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_2a1_2dna/fold_2a1_2dna_model_3.cif
    10679 
    10680 Chain information for fold_2a1_2dna_model_3.cif #8 
    10681 --- 
    10682 Chain | Description 
    10683 A B | . 
    10684 C D | . 
    10685  
    10686 
    10687 > open
    10688 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_2a1_2dna/fold_2a1_2dna_model_4.cif
    10689 
    10690 Chain information for fold_2a1_2dna_model_4.cif #9 
    10691 --- 
    10692 Chain | Description 
    10693 A B | . 
    10694 C D | . 
    10695  
    10696 
    10697 > hide #5 models
    10698 
    10699 > hide #6 models
    10700 
    10701 > hide #8 models
    10702 
    10703 > hide #9 models
    10704 
    10705 > show #5 models
    10706 
    10707 > hide #4 models
    10708 
    10709 > show #6 models
    10710 
    10711 > hide #5 models
    10712 
    10713 > show #8 models
    10714 
    10715 > hide #6 models
    10716 
    10717 > hide #8 models
    10718 
    10719 > show #9 models
    10720 
    10721 > close #8-9
    10722 
    10723 > close #4-6
    10724 
    10725 > open
    10726 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_2up1_2dna/fold_2up1_2dna_model_0.cif
    10727 
    10728 Chain information for fold_2up1_2dna_model_0.cif #4 
    10729 --- 
    10730 Chain | Description 
    10731 A B | . 
    10732 C D | . 
    10733  
    10734 
    10735 > open
    10736 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_2up1_2dna/fold_2up1_2dna_model_1.cif
    10737 
    10738 Chain information for fold_2up1_2dna_model_1.cif #5 
    10739 --- 
    10740 Chain | Description 
    10741 A B | . 
    10742 C D | . 
    10743  
    10744 
    10745 > open
    10746 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_2up1_2dna/fold_2up1_2dna_model_2.cif
    10747 
    10748 Chain information for fold_2up1_2dna_model_2.cif #6 
    10749 --- 
    10750 Chain | Description 
    10751 A B | . 
    10752 C D | . 
    10753  
    10754 
    10755 > open
    10756 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_2up1_2dna/fold_2up1_2dna_model_3.cif
    10757 
    10758 Chain information for fold_2up1_2dna_model_3.cif #8 
    10759 --- 
    10760 Chain | Description 
    10761 A B | . 
    10762 C D | . 
    10763  
    10764 
    10765 > open
    10766 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_2up1_2dna/fold_2up1_2dna_model_4.cif
    10767 
    10768 Chain information for fold_2up1_2dna_model_4.cif #9 
    10769 --- 
    10770 Chain | Description 
    10771 A B | . 
    10772 C D | . 
    10773  
    10774 
    10775 > hide #5 models
    10776 
    10777 > hide #6 models
    10778 
    10779 > hide #8 models
    10780 
    10781 > hide #9 models
    10782 
    10783 > show #5 models
    10784 
    10785 > hide #4 models
    10786 
    10787 > show #6 models
    10788 
    10789 > hide #5 models
    10790 
    10791 > show #8 models
    10792 
    10793 > hide #6 models
    10794 
    10795 > show #9 models
    10796 
    10797 > hide #8 models
    10798 
    10799 > close #8-9
    10800 
    10801 > close #4-6
    10802 
    10803 > open
    10804 > /Users/lingxiaobin/Desktop/MJB/up1-18a/alphafold3/fold_2up1_dna/fold_2up1_dna_model_0.cif
    10805 
    10806 Chain information for fold_2up1_dna_model_0.cif #4 
    10807 --- 
    10808 Chain | Description 
    10809 A B | . 
    10810 C | . 
    10811  
    10812 
    10813 > close #4
    10814 
    10815 > show #!1 models
    10816 
    10817 > view matrix models
    10818 > #13,0.38547,0.30994,-0.86911,243.34,0.88664,0.1364,0.44189,177.37,0.2555,-0.94092,-0.22222,198.02
    10819 
    10820 > close #3
    10821 
    10822 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-
    10823 > new-10_real_space_refined_009-coot-0.pdb
    10824 
    10825 Chain information for R-combine-new-10_real_space_refined_009-coot-0.pdb #3 
    10826 --- 
    10827 Chain | Description 
    10828 A | No description available 
    10829 C | No description available 
    10830 D | No description available 
    10831 E | No description available 
    10832 F | No description available 
    10833 G | No description available 
    10834 H | No description available 
    10835 I | No description available 
    10836  
    10837 
    10838 > ui tool show "Model Panel"
    10839 
    10840 > select #3/C:503@C6
    10841 
    10842 1 atom, 1 residue, 1 model selected 
    10843 
    10844 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10845 QFlags(NoModifier) 
    10846 
    10847 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10848 QFlags(ShiftModifier) 
    10849 
    10850 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10851 QFlags(ControlModifier) 
    10852 
    10853 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10854 QFlags(ShiftModifier|ControlModifier) 
    10855 
    10856 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10857 QFlags(AltModifier) 
    10858 
    10859 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10860 QFlags(ShiftModifier|AltModifier) 
    10861 
    10862 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10863 QFlags(ControlModifier|AltModifier) 
    10864 
    10865 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10866 QFlags(ShiftModifier|ControlModifier|AltModifier) 
    10867 
    10868 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10869 QFlags(MetaModifier) 
    10870 
    10871 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10872 QFlags(ShiftModifier|MetaModifier) 
    10873 
    10874 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10875 QFlags(ControlModifier|MetaModifier) 
    10876 
    10877 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10878 QFlags(ShiftModifier|ControlModifier|MetaModifier) 
    10879 
    10880 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10881 QFlags(AltModifier|MetaModifier) 
    10882 
    10883 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10884 QFlags(ShiftModifier|AltModifier|MetaModifier) 
    10885 
    10886 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10887 QFlags(ControlModifier|AltModifier|MetaModifier) 
    10888 
    10889 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    10890 QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) 
    10891 
    10892 > select up
    10893 
    10894 20 atoms, 21 bonds, 1 residue, 1 model selected 
    10895 
    10896 > select up
    10897 
    10898 3324 atoms, 3716 bonds, 156 residues, 1 model selected 
    10899 
    10900 > select up
    10901 
    10902 12029 atoms, 13466 bonds, 562 residues, 1 model selected 
    10903 
    10904 > style sel stick
    10905 
    10906 Changed 12029 atom styles 
    10907 
    10908 > cartoon sel
    10909 
    10910 > volume #2 level 5.06
    10911 
    10912 > ui mousemode right "rotate selected models"
    10913 
    10914 > view matrix models
    10915 > #3,0.62994,0.36657,0.68469,-137.11,-0.17726,0.92619,-0.33278,122.2,-0.75614,0.088268,0.64843,217.67
    10916 
    10917 > view matrix models
    10918 > #3,-0.62488,0.75963,0.18024,161.92,0.13981,0.33601,-0.93142,293.17,-0.7681,-0.55683,-0.31617,546.38
    10919 
    10920 > view matrix models
    10921 > #3,-0.72187,0.676,-0.14809,268.22,-0.54093,-0.68465,-0.48851,528.47,-0.43163,-0.27253,0.8599,170.75
    10922 
    10923 > view matrix models
    10924 > #3,-0.24789,0.93116,-0.26738,147.65,-0.60445,-0.36434,-0.70844,530.03,-0.75709,-0.013994,0.65316,235.68
    10925 
    10926 > view matrix models
    10927 > #3,-0.24837,0.93154,-0.26561,147.3,-0.60425,-0.36331,-0.70915,529.95,-0.75709,-0.015638,0.65312,235.99
    10928 
    10929 > ui mousemode right "translate selected models"
    10930 
    10931 > view matrix models
    10932 > #3,-0.24837,0.93154,-0.26561,151.9,-0.60425,-0.36331,-0.70915,558.07,-0.75709,-0.015638,0.65312,254.45
    10933 
    10934 > view matrix models
    10935 > #3,-0.24837,0.93154,-0.26561,153.69,-0.60425,-0.36331,-0.70915,569.81,-0.75709,-0.015638,0.65312,246.16
    10936 
    10937 > view matrix models
    10938 > #3,-0.24837,0.93154,-0.26561,145.7,-0.60425,-0.36331,-0.70915,559.81,-0.75709,-0.015638,0.65312,250.96
    10939 
    10940 > view matrix models
    10941 > #3,-0.24837,0.93154,-0.26561,144.66,-0.60425,-0.36331,-0.70915,557.53,-0.75709,-0.015638,0.65312,255.96
    10942 
    10943 > view matrix models
    10944 > #3,-0.24837,0.93154,-0.26561,127.64,-0.60425,-0.36331,-0.70915,575.72,-0.75709,-0.015638,0.65312,265.07
    10945 
    10946 > view matrix models
    10947 > #3,-0.24837,0.93154,-0.26561,135.5,-0.60425,-0.36331,-0.70915,579.71,-0.75709,-0.015638,0.65312,264.96
    10948 
    10949 > fitmap #3 inMap #2
    10950 
    10951 Fit molecule R-combine-new-10_real_space_refined_009-coot-0.pdb (#3) to map
    10952 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 12029 atoms 
    10953 average map value = 4.84, steps = 216 
    10954 shifted from previous position = 24.4 
    10955 rotated from previous position = 19.1 degrees 
    10956 atoms outside contour = 6256, contour level = 5.0597 
    10957  
    10958 Position of R-combine-new-10_real_space_refined_009-coot-0.pdb (#3) relative
    10959 to cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    10960 Matrix rotation and translation 
    10961 0.99999992 -0.00031953 -0.00023751 0.08866704 
    10962 0.00031962 0.99999987 0.00038809 -0.13025457 
    10963 0.00023739 -0.00038816 0.99999990 0.03252320 
    10964 Axis -0.69804943 -0.42705953 0.57475835 
    10965 Axis point 0.00000000 65.30347917 321.98232720 
    10966 Rotation angle (degrees) 0.03185704 
    10967 Shift along axis 0.01242546 
    10968  
    10969 
    10970 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-11.pdb
    10971 
    10972 Chain information for R-combine-new-11.pdb #4 
    10973 --- 
    10974 Chain | Description 
    10975 A | No description available 
    10976 B | No description available 
    10977 C | No description available 
    10978 D | No description available 
    10979 F | No description available 
    10980 G | No description available 
    10981 H | No description available 
    10982 I | No description available 
    10983  
    10984 
    10985 > select #4/H:67@OP2
    10986 
    10987 1 atom, 1 residue, 1 model selected 
    10988 
    10989 > select up
    10990 
    10991 23 atoms, 25 bonds, 1 residue, 1 model selected 
    10992 
    10993 > select up
    10994 
    10995 5810 atoms, 6509 bonds, 271 residues, 1 model selected 
    10996 
    10997 > select up
    10998 
    10999 11963 atoms, 13391 bonds, 559 residues, 1 model selected 
    11000 
    11001 > style sel stick
    11002 
    11003 Changed 11963 atom styles 
    11004 
    11005 > cartoon sel
    11006 
    11007 > ui mousemode right "rotate selected models"
    11008 
    11009 > view matrix models
    11010 > #4,0.088167,0.50302,0.85977,-86.379,-0.1423,0.86064,-0.48893,160.53,-0.98589,-0.079236,0.14746,404.26
    11011 
    11012 > view matrix models
    11013 > #4,-0.92018,-0.32561,0.21738,415.33,0.039778,-0.63012,-0.77548,458.52,0.38948,-0.70493,0.59278,135.78
    11014 
    11015 > view matrix models
    11016 > #4,-0.45821,0.87958,-0.12795,171.16,-0.30556,-0.29106,-0.9066,496.57,-0.83467,-0.37632,0.40213,372.37
    11017 
    11018 > view matrix models
    11019 > #4,-0.21668,0.95482,-0.2034,122.97,-0.18164,-0.24415,-0.95258,471.86,-0.9592,-0.16945,0.22633,398.13
    11020 
    11021 > view matrix models
    11022 > #4,-0.089359,0.98825,-0.12403,73.109,-0.43346,-0.1507,-0.88848,493.63,-0.89673,-0.025632,0.44183,312.3
    11023 
    11024 > ui mousemode right "translate selected models"
    11025 
    11026 > view matrix models
    11027 > #4,-0.089359,0.98825,-0.12403,51.284,-0.43346,-0.1507,-0.88848,509.67,-0.89673,-0.025632,0.44183,328.15
    11028 
    11029 > view matrix models
    11030 > #4,-0.089359,0.98825,-0.12403,63.736,-0.43346,-0.1507,-0.88848,514.46,-0.89673,-0.025632,0.44183,331.11
    11031 
    11032 > fitmap #4 inMap #2
    11033 
    11034 Fit molecule R-combine-new-11.pdb (#4) to map
    11035 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 11963 atoms 
    11036 average map value = 4.79, steps = 180 
    11037 shifted from previous position = 11.3 
    11038 rotated from previous position = 13.8 degrees 
    11039 atoms outside contour = 6282, contour level = 5.0597 
    11040  
    11041 Position of R-combine-new-11.pdb (#4) relative to
    11042 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    11043 Matrix rotation and translation 
    11044 1.00000000 -0.00004086 -0.00004565 0.01978176 
    11045 0.00004085 0.99999999 -0.00006600 0.00346270 
    11046 0.00004565 0.00006600 0.99999999 -0.03683914 
    11047 Axis 0.73291472 -0.50693242 0.45371305 
    11048 Axis point 0.00000000 530.90737522 21.93836470 
    11049 Rotation angle (degrees) 0.00515926 
    11050 Shift along axis -0.00397141 
    11051  
    11052 
    11053 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-combine-new-11-coot-0.pdb
    11054 
    11055 Chain information for R-combine-new-11-coot-0.pdb #5 
    11056 --- 
    11057 Chain | Description 
    11058 A | No description available 
    11059 D | No description available 
    11060 F | No description available 
    11061 G | No description available 
    11062 H | No description available 
    11063 I | No description available 
    11064  
    11065 
    11066 > select #5/I:263@O2'
    11067 
    11068 1 atom, 1 residue, 1 model selected 
    11069 
    11070 > select up
    11071 
    11072 23 atoms, 25 bonds, 1 residue, 1 model selected 
    11073 
    11074 > select up
    11075 
    11076 568 atoms, 638 bonds, 26 residues, 1 model selected 
    11077 
    11078 > select up
    11079 
    11080 11985 atoms, 13419 bonds, 560 residues, 1 model selected 
    11081 
    11082 > style sel stick
    11083 
    11084 Changed 11985 atom styles 
    11085 
    11086 > cartoon sel
    11087 
    11088 > view matrix models #5,1,0,0,-2.4185,0,1,0,-1.6526,0,0,1,3.4752
    11089 
    11090 > ui mousemode right "rotate selected models"
    11091 
    11092 > view matrix models
    11093 > #5,-0.0098992,0.9919,0.1266,-1.4255,-0.56818,0.098606,-0.81698,458.73,-0.82285,-0.080021,0.5626,284.14
    11094 
    11095 > view matrix models
    11096 > #5,-0.27908,0.94665,0.16113,55.756,-0.66087,-0.067611,-0.74745,493.81,-0.69668,-0.31508,0.64449,283.51
    11097 
    11098 > fitmap #5 inMap #2
    11099 
    11100 Fit molecule R-combine-new-11-coot-0.pdb (#5) to map
    11101 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 11985 atoms 
    11102 average map value = 4.998, steps = 340 
    11103 shifted from previous position = 35.5 
    11104 rotated from previous position = 11.4 degrees 
    11105 atoms outside contour = 6022, contour level = 5.0597 
    11106  
    11107 Position of R-combine-new-11-coot-0.pdb (#5) relative to
    11108 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    11109 Matrix rotation and translation 
    11110 0.99999999 0.00001704 -0.00017603 0.02178820 
    11111 -0.00001702 1.00000000 0.00010189 -0.00400511 
    11112 0.00017603 -0.00010189 0.99999998 -0.01154020 
    11113 Axis -0.49920520 -0.86245585 -0.08345100 
    11114 Axis point 68.63390253 0.00000000 105.45349749 
    11115 Rotation angle (degrees) 0.01169401 
    11116 Shift along axis -0.00645951 
    11117  
    11118 
    11119 > ui tool show "Model Panel"
    11120 
    11121 > hide #!3 models
    11122 
    11123 > hide #!4 models
    11124 
    11125 > hide #!5 models
    11126 
    11127 > hide #!2 models
    11128 
    11129 > show #!3 models
    11130 
    11131 > show #!5 models
    11132 
    11133 > hide #!3 models
    11134 
    11135 > view matrix models
    11136 > #5,-0.10607,0.99304,0.051115,39.738,-0.59666,-0.022439,-0.80218,509.89,-0.79546,-0.11558,0.59489,298.79
    11137 
    11138 > select clear
    11139 
    11140 > close #4
    11141 
    11142 > close #3
    11143 
    11144 > show #!1 models
    11145 
    11146 > hide #!2 models
    11147 
    11148 > fitmap #5 inMap #1
    11149 
    11150 Fit molecule R-combine-new-11-coot-0.pdb (#5) to map
    11151 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 11985 atoms 
    11152 average map value = 3.709, steps = 212 
    11153 shifted from previous position = 9.39 
    11154 rotated from previous position = 23.8 degrees 
    11155 atoms outside contour = 4985, contour level = 3.557 
    11156  
    11157 Position of R-combine-new-11-coot-0.pdb (#5) relative to
    11158 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    11159 Matrix rotation and translation 
    11160 -0.48324973 0.86818564 0.11279798 134.08070067 
    11161 -0.60459282 -0.23775758 -0.76022290 541.77068313 
    11162 -0.63319603 -0.43557436 0.63979509 315.86942909 
    11163 Axis 0.19295011 0.44337064 -0.87532436 
    11164 Axis point 272.28518487 308.43312429 0.00000000 
    11165 Rotation angle (degrees) 122.72490876 
    11166 Shift along axis -10.41210583 
    11167  
    11168 
    11169 > hide #!1 models
    11170 
    11171 > volume #1 level 4.4
    11172 
    11173 > volume #1 level 4.969
    11174 
    11175 > select #5/H:306
    11176 
    11177 23 atoms, 25 bonds, 1 residue, 1 model selected 
    11178 
    11179 > select add #5/H:307
    11180 
    11181 45 atoms, 49 bonds, 2 residues, 1 model selected 
    11182 
    11183 > select add #5/H:308
    11184 
    11185 65 atoms, 70 bonds, 3 residues, 1 model selected 
    11186 
    11187 > select add #5/H:309
    11188 
    11189 88 atoms, 95 bonds, 4 residues, 1 model selected 
    11190 
    11191 > select add #5/H:310
    11192 
    11193 110 atoms, 119 bonds, 5 residues, 1 model selected 
    11194 
    11195 > select add #5/H:311
    11196 
    11197 133 atoms, 144 bonds, 6 residues, 1 model selected 
    11198 
    11199 > select add #5/H:331
    11200 
    11201 153 atoms, 165 bonds, 7 residues, 1 model selected 
    11202 
    11203 > select add #5/H:330
    11204 
    11205 173 atoms, 186 bonds, 8 residues, 1 model selected 
    11206 
    11207 > select add #5/H:328
    11208 
    11209 196 atoms, 211 bonds, 9 residues, 1 model selected 
    11210 
    11211 > select add #5/H:329
    11212 
    11213 216 atoms, 232 bonds, 10 residues, 1 model selected 
    11214 
    11215 > select add #5/H:327
    11216 
    11217 239 atoms, 257 bonds, 11 residues, 1 model selected 
    11218 
    11219 > select add #5/H:326
    11220 
    11221 262 atoms, 282 bonds, 12 residues, 1 model selected 
    11222 
    11223 > volume #1 level 4.331
    11224 
    11225 > select add #5/H:325
    11226 
    11227 282 atoms, 303 bonds, 13 residues, 1 model selected 
    11228 
    11229 > select add #5/H:324
    11230 
    11231 304 atoms, 327 bonds, 14 residues, 1 model selected 
    11232 
    11233 > select add #5/H:323
    11234 
    11235 324 atoms, 348 bonds, 15 residues, 1 model selected 
    11236 
    11237 > select add #5/H:322
    11238 
    11239 346 atoms, 372 bonds, 16 residues, 1 model selected 
    11240 
    11241 > select add #5/H:321
    11242 
    11243 368 atoms, 396 bonds, 17 residues, 1 model selected 
    11244 
    11245 > select add #5/H:320
    11246 
    11247 390 atoms, 420 bonds, 18 residues, 1 model selected 
    11248 
    11249 > select add #5/H:319
    11250 
    11251 413 atoms, 445 bonds, 19 residues, 1 model selected 
    11252 
    11253 > select add #5/H:318
    11254 
    11255 435 atoms, 469 bonds, 20 residues, 1 model selected 
    11256 
    11257 > select add #5/H:317
    11258 
    11259 455 atoms, 490 bonds, 21 residues, 1 model selected 
    11260 
    11261 > select add #5/H:316
    11262 
    11263 477 atoms, 514 bonds, 22 residues, 1 model selected 
    11264 
    11265 > select add #5/H:315
    11266 
    11267 497 atoms, 535 bonds, 23 residues, 1 model selected 
    11268 
    11269 > select add #5/H:314
    11270 
    11271 517 atoms, 556 bonds, 24 residues, 1 model selected 
    11272 
    11273 > select add #5/H:313
    11274 
    11275 539 atoms, 580 bonds, 25 residues, 1 model selected 
    11276 
    11277 > select add #5/H:312
    11278 
    11279 561 atoms, 604 bonds, 26 residues, 1 model selected 
    11280 
    11281 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R306-331.pdb models #5
    11282 > relModel #5
    11283 
    11284 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R306-331.pdb
    11285 
    11286 Chain information for R306-331.pdb #3 
    11287 --- 
    11288 Chain | Description 
    11289 A | No description available 
    11290 D | No description available 
    11291 F | No description available 
    11292 G | No description available 
    11293 H | No description available 
    11294 I | No description available 
    11295  
    11296 
    11297 > close #3
    11298 
    11299 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R306-331.pdb models #5
    11300 > selectedOnly true relModel #5
    11301 
    11302 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R306-331.pdb
    11303 
    11304 Chain information for R306-331.pdb #3 
    11305 --- 
    11306 Chain | Description 
    11307 H | No description available 
    11308  
    11309 
    11310 > delete atoms sel
    11311 
    11312 > delete bonds sel
    11313 
    11314 > select #3/H:315
    11315 
    11316 20 atoms, 21 bonds, 1 residue, 1 model selected 
    11317 
    11318 > ui mousemode right "translate selected models"
    11319 
    11320 > view matrix models #3,1,0,0,30.92,0,1,0,11.757,0,0,1,15.143
    11321 
    11322 > view matrix models #3,1,0,0,30.481,0,1,0,12.206,0,0,1,14.428
    11323 
    11324 > ui mousemode right "rotate selected models"
    11325 
    11326 > view matrix models
    11327 > #3,0.9876,-0.0093772,0.15673,-4.4107,-0.074947,0.849,0.52306,-76.491,-0.13797,-0.52832,0.83776,175.33
    11328 
    11329 > view matrix models
    11330 > #3,0.50532,-0.81346,0.28797,200.33,-0.82692,-0.36107,0.43108,309.02,-0.24669,-0.45597,-0.85512,605.58
    11331 
    11332 > view matrix models
    11333 > #3,-0.47447,-0.54088,0.6945,244.21,-0.12877,0.82312,0.55308,-68.444,-0.8708,0.17299,-0.4602,519.2
    11334 
    11335 > view matrix models
    11336 > #3,-0.47154,-0.56009,0.68114,250.35,-0.15773,0.81352,0.55974,-62.701,-0.86763,0.1565,-0.47195,524.42
    11337 
    11338 > ui mousemode right "translate selected models"
    11339 
    11340 > view matrix models
    11341 > #3,-0.47154,-0.56009,0.68114,258.01,-0.15773,0.81352,0.55974,-60.624,-0.86763,0.1565,-0.47195,509.35
    11342 
    11343 > view matrix models
    11344 > #3,-0.47154,-0.56009,0.68114,256.62,-0.15773,0.81352,0.55974,-58.461,-0.86763,0.1565,-0.47195,518.49
    11345 
    11346 > view matrix models
    11347 > #3,-0.47154,-0.56009,0.68114,256.91,-0.15773,0.81352,0.55974,-55.099,-0.86763,0.1565,-0.47195,514.14
    11348 
    11349 > ui mousemode right "rotate selected models"
    11350 
    11351 > view matrix models
    11352 > #3,0.12986,-0.97481,0.18132,336.3,-0.39952,0.11593,0.90937,28.991,-0.90748,-0.19053,-0.3744,559.15
    11353 
    11354 > view matrix models
    11355 > #3,0.13026,-0.97368,0.18703,334.6,-0.3495,0.13144,0.92767,11.842,-0.92784,-0.1862,-0.32318,549.64
    11356 
    11357 > ui mousemode right "translate selected models"
    11358 
    11359 > ui mousemode right "rotate selected models"
    11360 
    11361 > view matrix models
    11362 > #3,-0.40223,-0.45056,0.797,195.16,-0.3507,0.87995,0.32047,30.681,-0.84571,-0.1506,-0.51196,574.02
    11363 
    11364 > view matrix models
    11365 > #3,-0.1011,-0.62059,0.77759,170.69,-0.51972,0.69941,0.49062,53.567,-0.84833,-0.35453,-0.39325,581.04
    11366 
    11367 > ui mousemode right "translate selected models"
    11368 
    11369 > view matrix models
    11370 > #3,-0.1011,-0.62059,0.77759,169.71,-0.51972,0.69941,0.49062,53.354,-0.84833,-0.35453,-0.39325,587.86
    11371 
    11372 > view matrix models
    11373 > #3,-0.1011,-0.62059,0.77759,167.92,-0.51972,0.69941,0.49062,65.289,-0.84833,-0.35453,-0.39325,581.72
    11374 
    11375 > view matrix models
    11376 > #3,-0.1011,-0.62059,0.77759,171.25,-0.51972,0.69941,0.49062,68.088,-0.84833,-0.35453,-0.39325,581.18
    11377 
    11378 > view matrix models
    11379 > #3,-0.1011,-0.62059,0.77759,172.64,-0.51972,0.69941,0.49062,64.49,-0.84833,-0.35453,-0.39325,582.92
    11380 
    11381 > ui tool show "Model Panel"
    11382 
    11383 > hide #3 models
    11384 
    11385 > hide #!5 models
    11386 
    11387 > hide #!1 models
    11388 
    11389 > show #!7 models
    11390 
    11391 > close #7
    11392 
    11393 > show #!10 models
    11394 
    11395 > close #10
    11396 
    11397 > show #11 models
    11398 
    11399 > show #12 models
    11400 
    11401 > hide #11 models
    11402 
    11403 > close #12
    11404 
    11405 > show #11 models
    11406 
    11407 > hide #11 models
    11408 
    11409 > show #!13 models
    11410 
    11411 > select #13/A:333
    11412 
    11413 20 atoms, 21 bonds, 1 residue, 1 model selected 
    11414 
    11415 > select add #13/A:302
    11416 
    11417 40 atoms, 42 bonds, 2 residues, 1 model selected 
    11418 
    11419 > select add #13/A:303
    11420 
    11421 60 atoms, 63 bonds, 3 residues, 1 model selected 
    11422 
    11423 > select add #13/A:304
    11424 
    11425 80 atoms, 84 bonds, 4 residues, 1 model selected 
    11426 
    11427 > select add #13/A:305
    11428 
    11429 103 atoms, 109 bonds, 5 residues, 1 model selected 
    11430 
    11431 > select add #13/A:306
    11432 
    11433 125 atoms, 133 bonds, 6 residues, 1 model selected 
    11434 
    11435 > select add #13/A:307
    11436 
    11437 145 atoms, 154 bonds, 7 residues, 1 model selected 
    11438 
    11439 > select add #13/A:308
    11440 
    11441 168 atoms, 179 bonds, 8 residues, 1 model selected 
    11442 
    11443 > select add #13/A:309
    11444 
    11445 190 atoms, 203 bonds, 9 residues, 1 model selected 
    11446 
    11447 > select add #13/A:310
    11448 
    11449 213 atoms, 228 bonds, 10 residues, 1 model selected 
    11450 
    11451 > select add #13/A:311
    11452 
    11453 235 atoms, 252 bonds, 11 residues, 1 model selected 
    11454 
    11455 > select add #13/A:312
    11456 
    11457 257 atoms, 276 bonds, 12 residues, 1 model selected 
    11458 
    11459 > select add #13/A:313
    11460 
    11461 277 atoms, 297 bonds, 13 residues, 1 model selected 
    11462 
    11463 > select add #13/A:314
    11464 
    11465 297 atoms, 318 bonds, 14 residues, 1 model selected 
    11466 
    11467 > select add #13/A:315
    11468 
    11469 319 atoms, 342 bonds, 15 residues, 1 model selected 
    11470 
    11471 > select add #13/A:316
    11472 
    11473 339 atoms, 363 bonds, 16 residues, 1 model selected 
    11474 
    11475 > select add #13/A:317
    11476 
    11477 361 atoms, 387 bonds, 17 residues, 1 model selected 
    11478 
    11479 > select add #13/A:318
    11480 
    11481 384 atoms, 412 bonds, 18 residues, 1 model selected 
    11482 
    11483 > select add #13/A:319
    11484 
    11485 406 atoms, 436 bonds, 19 residues, 1 model selected 
    11486 
    11487 > select add #13/A:320
    11488 
    11489 428 atoms, 460 bonds, 20 residues, 1 model selected 
    11490 
    11491 > select add #13/A:321
    11492 
    11493 450 atoms, 484 bonds, 21 residues, 1 model selected 
    11494 
    11495 > select add #13/A:322
    11496 
    11497 470 atoms, 505 bonds, 22 residues, 1 model selected 
    11498 
    11499 > select add #13/A:323
    11500 
    11501 492 atoms, 529 bonds, 23 residues, 1 model selected 
    11502 
    11503 > select add #13/A:324
    11504 
    11505 512 atoms, 550 bonds, 24 residues, 1 model selected 
    11506 
    11507 > select add #13/A:325
    11508 
    11509 535 atoms, 575 bonds, 25 residues, 1 model selected 
    11510 
    11511 > select add #13/A:326
    11512 
    11513 558 atoms, 600 bonds, 26 residues, 1 model selected 
    11514 
    11515 > select add #13/A:327
    11516 
    11517 581 atoms, 625 bonds, 27 residues, 1 model selected 
    11518 
    11519 > select add #13/A:328
    11520 
    11521 601 atoms, 646 bonds, 28 residues, 1 model selected 
    11522 
    11523 > select add #13/A:329
    11524 
    11525 621 atoms, 667 bonds, 29 residues, 1 model selected 
    11526 
    11527 > select add #13/A:330
    11528 
    11529 641 atoms, 688 bonds, 30 residues, 1 model selected 
    11530 
    11531 > select add #13/A:331
    11532 
    11533 663 atoms, 712 bonds, 31 residues, 1 model selected 
    11534 
    11535 > select add #13/A:332
    11536 
    11537 685 atoms, 736 bonds, 32 residues, 1 model selected 
    11538 
    11539 > select ~sel & ##selected
    11540 
    11541 1095 atoms, 1227 bonds, 1 pseudobond, 51 residues, 2 models selected 
    11542 
    11543 > delete atoms (#!13 & sel)
    11544 
    11545 > delete bonds (#!13 & sel)
    11546 
    11547 > show #!1 models
    11548 
    11549 > show #3 models
    11550 
    11551 > hide #3 models
    11552 
    11553 > show #!5 models
    11554 
    11555 > select #13/A:308
    11556 
    11557 23 atoms, 25 bonds, 1 residue, 1 model selected 
    11558 
    11559 > view matrix models
    11560 > #13,0.38547,0.30994,-0.86911,248.61,0.88664,0.1364,0.44189,172.08,0.2555,-0.94092,-0.22222,229.64
    11561 
    11562 > ui mousemode right "rotate selected models"
    11563 
    11564 > view matrix models
    11565 > #13,0.15606,0.70676,-0.69003,257.16,0.2716,0.64096,0.71792,186.39,0.94967,-0.29945,-0.091928,232.12
    11566 
    11567 > ui mousemode right "translate selected models"
    11568 
    11569 > view matrix models
    11570 > #13,0.15606,0.70676,-0.69003,250.13,0.2716,0.64096,0.71792,190.92,0.94967,-0.29945,-0.091928,229.95
    11571 
    11572 > view matrix models
    11573 > #13,0.15606,0.70676,-0.69003,249.91,0.2716,0.64096,0.71792,196.25,0.94967,-0.29945,-0.091928,238.82
    11574 
    11575 > view matrix models
    11576 > #13,0.15606,0.70676,-0.69003,249.52,0.2716,0.64096,0.71792,196.57,0.94967,-0.29945,-0.091928,239.22
    11577 
    11578 > view matrix models
    11579 > #13,0.15606,0.70676,-0.69003,248.54,0.2716,0.64096,0.71792,202.07,0.94967,-0.29945,-0.091928,248.1
    11580 
    11581 > view matrix models
    11582 > #13,0.15606,0.70676,-0.69003,255.45,0.2716,0.64096,0.71792,206.84,0.94967,-0.29945,-0.091928,239.29
    11583 
    11584 > view matrix models
    11585 > #13,0.15606,0.70676,-0.69003,256.93,0.2716,0.64096,0.71792,208.18,0.94967,-0.29945,-0.091928,238.32
    11586 
    11587 > view matrix models
    11588 > #13,0.15606,0.70676,-0.69003,256.93,0.2716,0.64096,0.71792,208.71,0.94967,-0.29945,-0.091928,237.22
    11589 
    11590 Drag select of 492 atoms, 32 residues, 545 bonds 
    11591 
    11592 > delete atoms sel
    11593 
    11594 > delete bonds sel
    11595 
    11596 > select #5/F:365
    11597 
    11598 20 atoms, 21 bonds, 1 residue, 1 model selected 
    11599 
    11600 > select add #5/F:366
    11601 
    11602 40 atoms, 42 bonds, 2 residues, 1 model selected 
    11603 
    11604 > select add #5/F:367
    11605 
    11606 60 atoms, 63 bonds, 3 residues, 1 model selected 
    11607 
    11608 > select add #5/F:368
    11609 
    11610 82 atoms, 87 bonds, 4 residues, 1 model selected 
    11611 
    11612 > select add #5/F:369
    11613 
    11614 102 atoms, 108 bonds, 5 residues, 1 model selected 
    11615 
    11616 > select add #5/F:370
    11617 
    11618 124 atoms, 132 bonds, 6 residues, 1 model selected 
    11619 
    11620 > select add #5/F:371
    11621 
    11622 146 atoms, 156 bonds, 7 residues, 1 model selected 
    11623 
    11624 > select add #5/F:404
    11625 
    11626 157 atoms, 166 bonds, 8 residues, 1 model selected 
    11627 
    11628 > select add #5/F:405
    11629 
    11630 170 atoms, 177 bonds, 9 residues, 1 model selected 
    11631 
    11632 > select add #5/F:406
    11633 
    11634 188 atoms, 196 bonds, 10 residues, 1 model selected 
    11635 
    11636 > select add #5/F:407
    11637 
    11638 208 atoms, 217 bonds, 11 residues, 1 model selected 
    11639 
    11640 > select add #5/F:408
    11641 
    11642 228 atoms, 238 bonds, 12 residues, 1 model selected 
    11643 
    11644 > select add #5/F:409
    11645 
    11646 248 atoms, 259 bonds, 13 residues, 1 model selected 
    11647 
    11648 > delete atoms sel
    11649 
    11650 > delete bonds sel
    11651 
    11652 > select add #5/F:364
    11653 
    11654 23 atoms, 25 bonds, 1 residue, 1 model selected 
    11655 
    11656 > select add #5/F:363
    11657 
    11658 45 atoms, 49 bonds, 2 residues, 1 model selected 
    11659 
    11660 > select add #5/F:360
    11661 
    11662 68 atoms, 74 bonds, 3 residues, 1 model selected 
    11663 
    11664 > select add #5/F:359
    11665 
    11666 90 atoms, 98 bonds, 4 residues, 1 model selected 
    11667 
    11668 > select add #5/F:416
    11669 
    11670 113 atoms, 123 bonds, 5 residues, 1 model selected 
    11671 
    11672 > select add #5/F:415
    11673 
    11674 133 atoms, 144 bonds, 6 residues, 1 model selected 
    11675 
    11676 > select add #5/F:414
    11677 
    11678 153 atoms, 165 bonds, 7 residues, 1 model selected 
    11679 
    11680 > select add #5/F:413
    11681 
    11682 176 atoms, 190 bonds, 8 residues, 1 model selected 
    11683 
    11684 > select add #5/F:412
    11685 
    11686 196 atoms, 211 bonds, 9 residues, 1 model selected 
    11687 
    11688 > select add #5/F:411
    11689 
    11690 218 atoms, 235 bonds, 10 residues, 1 model selected 
    11691 
    11692 > select subtract #5/F:411
    11693 
    11694 196 atoms, 211 bonds, 9 residues, 1 model selected 
    11695 
    11696 > select add #5/F:411
    11697 
    11698 218 atoms, 235 bonds, 10 residues, 1 model selected 
    11699 
    11700 > select add #5/F:410
    11701 
    11702 240 atoms, 259 bonds, 11 residues, 1 model selected 
    11703 
    11704 > delete atoms sel
    11705 
    11706 > delete bonds sel
    11707 
    11708 > select add #5/F:361
    11709 
    11710 20 atoms, 21 bonds, 1 residue, 1 model selected 
    11711 
    11712 > select add #5/F:362
    11713 
    11714 40 atoms, 42 bonds, 2 residues, 1 model selected 
    11715 
    11716 > delete atoms sel
    11717 
    11718 > delete bonds sel
    11719 
    11720 > select #13/A:328
    11721 
    11722 20 atoms, 21 bonds, 1 residue, 1 model selected 
    11723 
    11724 > fitmap #13 inMap #1
    11725 
    11726 Fit molecule fold_r_e_model_3.cif (#13) to map
    11727 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 685 atoms 
    11728 average map value = 2.937, steps = 104 
    11729 shifted from previous position = 8 
    11730 rotated from previous position = 27.9 degrees 
    11731 atoms outside contour = 460, contour level = 4.3314 
    11732  
    11733 Position of fold_r_e_model_3.cif (#13) relative to
    11734 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    11735 Matrix rotation and translation 
    11736 0.02537762 0.64482892 -0.76390552 252.04017805 
    11737 -0.17215296 0.75555458 0.63206063 220.21969679 
    11738 0.98474329 0.11546840 0.13018338 239.47923066 
    11739 Axis -0.25855158 -0.87518913 -0.40889494 
    11740 Axis point 42.13204263 0.00000000 155.75124558 
    11741 Rotation angle (degrees) 92.54719018 
    11742 Shift along axis -355.82111566 
    11743  
    11744 
    11745 > view matrix models
    11746 > #13,0.025378,0.64483,-0.76391,255.1,-0.17215,0.75555,0.63206,216.95,0.98474,0.11547,0.13018,241.15
    11747 
    11748 > view matrix models
    11749 > #13,0.025378,0.64483,-0.76391,257.6,-0.17215,0.75555,0.63206,214.4,0.98474,0.11547,0.13018,242.16
    11750 
    11751 > view matrix models
    11752 > #13,0.025378,0.64483,-0.76391,260.57,-0.17215,0.75555,0.63206,211.58,0.98474,0.11547,0.13018,242.73
    11753 
    11754 > view matrix models
    11755 > #13,0.025378,0.64483,-0.76391,264.24,-0.17215,0.75555,0.63206,207.94,0.98474,0.11547,0.13018,243.85
    11756 
    11757 > view matrix models
    11758 > #13,0.025378,0.64483,-0.76391,267.53,-0.17215,0.75555,0.63206,205.04,0.98474,0.11547,0.13018,243.81
    11759 
    11760 > view matrix models
    11761 > #13,0.025378,0.64483,-0.76391,271.08,-0.17215,0.75555,0.63206,201.87,0.98474,0.11547,0.13018,243.85
    11762 
    11763 > select #13/A:302
    11764 
    11765 20 atoms, 21 bonds, 1 residue, 1 model selected 
    11766 
    11767 > select add #13/A:304
    11768 
    11769 60 atoms, 42 bonds, 3 residues, 1 model selected 
    11770 
    11771 > delete atoms sel
    11772 
    11773 > delete bonds sel
    11774 
    11775 > select add #13/A:305
    11776 
    11777 23 atoms, 25 bonds, 1 residue, 1 model selected 
    11778 
    11779 > delete atoms sel
    11780 
    11781 > delete bonds sel
    11782 
    11783 > ui mousemode right "rotate selected models"
    11784 
    11785 > select #13/A:332
    11786 
    11787 22 atoms, 24 bonds, 1 residue, 1 model selected 
    11788 
    11789 > view matrix models
    11790 > #13,-0.12797,0.73866,-0.66182,273.71,-0.61976,0.46141,0.63482,201.64,0.77429,0.49141,0.39875,250.9
    11791 
    11792 > view matrix models
    11793 > #13,-0.24442,0.60913,-0.75447,273.59,-0.96762,-0.10264,0.23061,199.17,0.063033,0.7864,0.61449,263.24
    11794 
    11795 > view matrix models
    11796 > #13,0.14338,0.50596,-0.85056,267.88,-0.60804,-0.63306,-0.47908,191.69,-0.78085,0.58587,0.21687,273.57
    11797 
    11798 > view matrix models
    11799 > #13,0.28506,0.44618,-0.84833,264.97,-0.086538,-0.86946,-0.48637,180.84,-0.95459,0.21206,-0.20924,272.81
    11800 
    11801 > view matrix models
    11802 > #13,0.48819,0.3529,-0.79821,260.29,0.49519,-0.86513,-0.07962,170.07,-0.71865,-0.3564,-0.5971,263.06
    11803 
    11804 > ui mousemode right "translate selected models"
    11805 
    11806 > view matrix models
    11807 > #13,0.48819,0.3529,-0.79821,256.19,0.49519,-0.86513,-0.07962,173.23,-0.71865,-0.3564,-0.5971,261.1
    11808 
    11809 > view matrix models
    11810 > #13,0.48819,0.3529,-0.79821,255.98,0.49519,-0.86513,-0.07962,173.54,-0.71865,-0.3564,-0.5971,261.99
    11811 
    11812 > view matrix models
    11813 > #13,0.48819,0.3529,-0.79821,254.44,0.49519,-0.86513,-0.07962,170.97,-0.71865,-0.3564,-0.5971,261.68
    11814 
    11815 > view matrix models
    11816 > #13,0.48819,0.3529,-0.79821,253.4,0.49519,-0.86513,-0.07962,172.06,-0.71865,-0.3564,-0.5971,262.45
    11817 
    11818 > view matrix models
    11819 > #13,0.48819,0.3529,-0.79821,253.19,0.49519,-0.86513,-0.07962,169.62,-0.71865,-0.3564,-0.5971,263.87
    11820 
    11821 > view matrix models
    11822 > #13,0.48819,0.3529,-0.79821,253.61,0.49519,-0.86513,-0.07962,170.3,-0.71865,-0.3564,-0.5971,264.32
    11823 
    11824 > select clear
    11825 
    11826 > show #11 models
    11827 
    11828 > hide #!5 models
    11829 
    11830 > hide #!13 models
    11831 
    11832 > ui tool show "Show Sequence Viewer"
    11833 
    11834 > sequence chain #11/A #13/A #14/A #17/B #19/B #15/B
    11835 
    11836 Alignment identifier is 1 
    11837 
    11838 > select #11/A #13/A #14/A #17/B #19/B #15/B
    11839 
    11840 38459 atoms, 43092 bonds, 1797 residues, 6 models selected 
    11841 
    11842 > select clear
    11843 
    11844 > select #11/A #13/A #14/A #17/B #19/B #15/B
    11845 
    11846 38459 atoms, 43092 bonds, 1797 residues, 6 models selected 
    11847 
    11848 > select #11/A:335 #14/A:335 #17/B:335
    11849 
    11850 66 atoms, 72 bonds, 3 residues, 3 models selected 
    11851 
    11852 > select #11/A:335 #14/A:335 #17/B:335
    11853 
    11854 66 atoms, 72 bonds, 3 residues, 3 models selected 
    11855 . [ID: 1] region 6 chains [335] RMSD: 80.443 
    11856  
    11857 
    11858 > select #11/A #13/A #14/A #17/B #19/B #15/B
    11859 
    11860 38459 atoms, 43092 bonds, 1797 residues, 6 models selected 
    11861 
    11862 > select #11/A:358 #14/A:358 #17/B:358
    11863 
    11864 66 atoms, 72 bonds, 3 residues, 3 models selected 
    11865 
    11866 > select #11/A:358-421 #14/A:358-421 #17/B:358-421
    11867 
    11868 4083 atoms, 4575 bonds, 192 residues, 3 models selected 
    11869 . [ID: 1] region 6 chains [358-421] RMSD: 62.241 
    11870  
    11871 
    11872 > select ~sel & ##selected
    11873 
    11874 32953 atoms, 36921 bonds, 1540 residues, 3 models selected 
    11875 
    11876 > delete atoms (#11 & sel)
    11877 
    11878 > delete bonds (#11 & sel)
    11879 
    11880 > show #!5 models
    11881 
    11882 > hide #!5 models
    11883 
    11884 > show #!5 models
    11885 
    11886 > show #!13 models
    11887 
    11888 Drag select of 64 residues, 128 shapes 
    11889 
    11890 > view matrix models #11,1,0,0,291.55,0,1,0,292.18,0,0,1,159.38
    11891 
    11892 > view matrix models #11,1,0,0,288.55,0,1,0,213.91,0,0,1,255
    11893 
    11894 > show #!1 models
    11895 
    11896 > view matrix models #11,1,0,0,232.46,0,1,0,153.67,0,0,1,254.38
    11897 
    11898 > view matrix models #11,1,0,0,238.05,0,1,0,146.07,0,0,1,295.47
    11899 
    11900 > view matrix models #11,1,0,0,233.22,0,1,0,148,0,0,1,294.4
    11901 
    11902 > view matrix models #11,1,0,0,252.85,0,1,0,164.51,0,0,1,326.07
    11903 
    11904 > view matrix models #11,1,0,0,242.93,0,1,0,187.72,0,0,1,278.56
    11905 
    11906 > view matrix models #11,1,0,0,230.81,0,1,0,191.88,0,0,1,292.24
    11907 
    11908 > view matrix models #11,1,0,0,233.25,0,1,0,175.56,0,0,1,287.03
    11909 
    11910 > view matrix models #11,1,0,0,231.64,0,1,0,175.49,0,0,1,286.91
    11911 
    11912 > ui mousemode right "rotate selected models"
    11913 
    11914 > view matrix models
    11915 > #11,0.67339,0.34672,-0.65294,225.56,-0.71869,0.09998,-0.68811,175.39,-0.1733,0.93262,0.31651,277.71
    11916 
    11917 > view matrix models
    11918 > #11,0.99333,-0.071673,0.090367,232.1,0.11534,0.61352,-0.78121,186.13,0.00054953,0.78642,0.61769,280.99
    11919 
    11920 > view matrix models
    11921 > #11,0.92186,-0.038919,0.38556,228.83,0.15206,0.95147,-0.26753,180.38,-0.35644,0.30526,0.88304,278.09
    11922 
    11923 > ui mousemode right "translate selected models"
    11924 
    11925 > view matrix models
    11926 > #11,0.92186,-0.038919,0.38556,243.02,0.15206,0.95147,-0.26753,183.69,-0.35644,0.30526,0.88304,245.52
    11927 
    11928 > view matrix models
    11929 > #11,0.92186,-0.038919,0.38556,244.32,0.15206,0.95147,-0.26753,183.34,-0.35644,0.30526,0.88304,245.02
    11930 
    11931 > fitmap #11 inMap #1
    11932 
    11933 Fit molecule fold_r_e_model_1.cif (#11) to map
    11934 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 1361 atoms 
    11935 average map value = 3.323, steps = 156 
    11936 shifted from previous position = 7.91 
    11937 rotated from previous position = 18.4 degrees 
    11938 atoms outside contour = 789, contour level = 4.3314 
    11939  
    11940 Position of fold_r_e_model_1.cif (#11) relative to
    11941 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    11942 Matrix rotation and translation 
    11943 0.79603709 0.04925729 0.60324014 235.57843635 
    11944 0.03958997 0.99031072 -0.13310637 173.32450959 
    11945 -0.60395164 0.12983987 0.78637397 241.24371191 
    11946 Axis 0.21281978 0.97706014 -0.00782440 
    11947 Axis point 458.41629743 0.00000000 -158.75874442 
    11948 Rotation angle (degrees) 38.15327988 
    11949 Shift along axis 217.59663427 
    11950  
    11951 
    11952 > view matrix models
    11953 > #11,0.79604,0.049257,0.60324,232.7,0.03959,0.99031,-0.13311,175.29,-0.60395,0.12984,0.78637,244.24
    11954 
    11955 > view matrix models
    11956 > #11,0.79604,0.049257,0.60324,233.51,0.03959,0.99031,-0.13311,175.81,-0.60395,0.12984,0.78637,240.88
    11957 
    11958 > ui mousemode right "rotate selected models"
    11959 
    11960 > view matrix models
    11961 > #11,0.5729,0.78498,0.23577,223.41,-0.44217,0.53821,-0.71751,175.13,-0.69012,0.30681,0.65543,238.09
    11962 
    11963 > view matrix models
    11964 > #11,0.41043,0.91183,-0.010823,220.35,-0.50838,0.21895,-0.83283,177.86,-0.75703,0.34732,0.55342,236.96
    11965 
    11966 > ui mousemode right "translate selected models"
    11967 
    11968 > view matrix models
    11969 > #11,0.41043,0.91183,-0.010823,216.56,-0.50838,0.21895,-0.83283,181.41,-0.75703,0.34732,0.55342,234.82
    11970 
    11971 > ui mousemode right "rotate selected models"
    11972 
    11973 > view matrix models
    11974 > #11,0.19488,0.80682,-0.55772,216.98,-0.47705,-0.41887,-0.77264,188.51,-0.857,0.41663,0.30326,233.72
    11975 
    11976 > view matrix models
    11977 > #11,0.25654,0.86971,-0.42165,216.61,-0.45971,-0.27395,-0.84476,187.64,-0.85021,0.41055,0.32954,233.76
    11978 
    11979 > view matrix models
    11980 > #11,0.24769,0.87394,-0.41818,216.37,-0.47664,-0.26586,-0.83793,187.19,-0.84348,0.40687,0.35071,233.8
    11981 
    11982 > ui mousemode right "translate selected models"
    11983 
    11984 > view matrix models
    11985 > #11,0.24769,0.87394,-0.41818,215.3,-0.47664,-0.26586,-0.83793,187.76,-0.84348,0.40687,0.35071,232.04
    11986 
    11987 > view matrix models
    11988 > #11,0.24769,0.87394,-0.41818,216.37,-0.47664,-0.26586,-0.83793,187.3,-0.84348,0.40687,0.35071,230.42
    11989 
    11990 > fitmap #11 inMap #1
    11991 
    11992 Fit molecule fold_r_e_model_1.cif (#11) to map
    11993 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 1361 atoms 
    11994 average map value = 3.503, steps = 328 
    11995 shifted from previous position = 13.5 
    11996 rotated from previous position = 37.6 degrees 
    11997 atoms outside contour = 749, contour level = 4.3314 
    11998  
    11999 Position of fold_r_e_model_1.cif (#11) relative to
    12000 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    12001 Matrix rotation and translation 
    12002 0.73813252 0.67257423 -0.05295551 233.87868063 
    12003 -0.23779160 0.18590675 -0.95335923 191.83709428 
    12004 -0.63136007 0.71629783 0.29715632 233.64582553 
    12005 Axis 0.83998161 0.29098742 -0.45799259 
    12006 Axis point 0.00000000 -144.25931629 280.06913244 
    12007 Rotation angle (degrees) 83.65022311 
    12008 Shift along axis 145.26791534 
    12009  
    12010 
    12011 > hide #!1 models
    12012 
    12013 > select clear
    12014 
    12015 > select #11/A:402
    12016 
    12017 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12018 
    12019 > select #11/A:403
    12020 
    12021 22 atoms, 24 bonds, 1 residue, 1 model selected 
    12022 
    12023 > select add #11/A:376
    12024 
    12025 42 atoms, 45 bonds, 2 residues, 1 model selected 
    12026 
    12027 > select add #11/A:404
    12028 
    12029 62 atoms, 66 bonds, 3 residues, 1 model selected 
    12030 
    12031 > select add #11/A:405
    12032 
    12033 82 atoms, 87 bonds, 4 residues, 1 model selected 
    12034 
    12035 > select add #11/A:406
    12036 
    12037 104 atoms, 111 bonds, 5 residues, 1 model selected 
    12038 
    12039 > select add #11/A:407
    12040 
    12041 124 atoms, 132 bonds, 6 residues, 1 model selected 
    12042 
    12043 > select add #11/A:408
    12044 
    12045 144 atoms, 153 bonds, 7 residues, 1 model selected 
    12046 
    12047 > select add #11/A:409
    12048 
    12049 164 atoms, 174 bonds, 8 residues, 1 model selected 
    12050 
    12051 > select add #11/A:375
    12052 
    12053 186 atoms, 198 bonds, 9 residues, 1 model selected 
    12054 
    12055 > select add #11/A:374
    12056 
    12057 206 atoms, 219 bonds, 10 residues, 1 model selected 
    12058 
    12059 > select add #11/A:373
    12060 
    12061 228 atoms, 243 bonds, 11 residues, 1 model selected 
    12062 
    12063 > select add #11/A:372
    12064 
    12065 250 atoms, 267 bonds, 12 residues, 1 model selected 
    12066 
    12067 > select add #11/A:371
    12068 
    12069 272 atoms, 291 bonds, 13 residues, 1 model selected 
    12070 
    12071 > select add #11/A:370
    12072 
    12073 294 atoms, 315 bonds, 14 residues, 1 model selected 
    12074 
    12075 > select add #11/A:369
    12076 
    12077 314 atoms, 336 bonds, 15 residues, 1 model selected 
    12078 
    12079 > select add #11/A:368
    12080 
    12081 336 atoms, 360 bonds, 16 residues, 1 model selected 
    12082 
    12083 > select add #11/A:367
    12084 
    12085 356 atoms, 381 bonds, 17 residues, 1 model selected 
    12086 
    12087 > view matrix models
    12088 > #11,0.73813,0.67257,-0.052956,234.18,-0.23779,0.18591,-0.95336,191.54,-0.63136,0.7163,0.29716,234.25
    12089 
    12090 > select add #11/A:366
    12091 
    12092 376 atoms, 402 bonds, 18 residues, 1 model selected 
    12093 
    12094 > select add #11/A:365
    12095 
    12096 396 atoms, 423 bonds, 19 residues, 1 model selected 
    12097 
    12098 > select add #11/A:411
    12099 
    12100 418 atoms, 447 bonds, 20 residues, 1 model selected 
    12101 
    12102 > select add #11/A:410
    12103 
    12104 440 atoms, 471 bonds, 21 residues, 1 model selected 
    12105 
    12106 > select add #11/A:413
    12107 
    12108 463 atoms, 496 bonds, 22 residues, 1 model selected 
    12109 
    12110 > select add #11/A:412
    12111 
    12112 483 atoms, 517 bonds, 23 residues, 1 model selected 
    12113 
    12114 > select add #11/A:414
    12115 
    12116 503 atoms, 538 bonds, 24 residues, 1 model selected 
    12117 
    12118 > select add #11/A:415
    12119 
    12120 523 atoms, 559 bonds, 25 residues, 1 model selected 
    12121 
    12122 > select add #11/A:416
    12123 
    12124 546 atoms, 584 bonds, 26 residues, 1 model selected 
    12125 
    12126 > select add #11/A:417
    12127 
    12128 568 atoms, 608 bonds, 27 residues, 1 model selected 
    12129 
    12130 > select add #11/A:418
    12131 
    12132 590 atoms, 632 bonds, 28 residues, 1 model selected 
    12133 
    12134 > select add #11/A:419
    12135 
    12136 610 atoms, 653 bonds, 29 residues, 1 model selected 
    12137 
    12138 > select add #11/A:420
    12139 
    12140 633 atoms, 678 bonds, 30 residues, 1 model selected 
    12141 
    12142 > select add #11/A:421
    12143 
    12144 653 atoms, 699 bonds, 31 residues, 1 model selected 
    12145 
    12146 > select add #11/A:364
    12147 
    12148 676 atoms, 724 bonds, 32 residues, 1 model selected 
    12149 
    12150 > select add #11/A:363
    12151 
    12152 698 atoms, 748 bonds, 33 residues, 1 model selected 
    12153 
    12154 > select add #11/A:362
    12155 
    12156 718 atoms, 769 bonds, 34 residues, 1 model selected 
    12157 
    12158 > select add #11/A:361
    12159 
    12160 738 atoms, 790 bonds, 35 residues, 1 model selected 
    12161 
    12162 > select add #11/A:360
    12163 
    12164 761 atoms, 815 bonds, 36 residues, 1 model selected 
    12165 
    12166 > select add #11/A:359
    12167 
    12168 783 atoms, 839 bonds, 37 residues, 1 model selected 
    12169 
    12170 > select add #11/A:358
    12171 
    12172 805 atoms, 863 bonds, 38 residues, 1 model selected 
    12173 
    12174 > delete atoms sel
    12175 
    12176 > delete bonds sel
    12177 
    12178 > select #11/A:387
    12179 
    12180 22 atoms, 24 bonds, 1 residue, 1 model selected 
    12181 
    12182 > fitmap #11 inMap #1
    12183 
    12184 Fit molecule fold_r_e_model_1.cif (#11) to map
    12185 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 556 atoms 
    12186 average map value = 4.016, steps = 156 
    12187 shifted from previous position = 3.16 
    12188 rotated from previous position = 25.5 degrees 
    12189 atoms outside contour = 259, contour level = 4.3314 
    12190  
    12191 Position of fold_r_e_model_1.cif (#11) relative to
    12192 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    12193 Matrix rotation and translation 
    12194 0.38792224 0.90839512 -0.15599566 217.23534951 
    12195 -0.30211187 -0.03458030 -0.95264506 193.06552059 
    12196 -0.87077250 0.41668035 0.26102248 228.57145155 
    12197 Axis 0.69775640 0.36422323 -0.61682854 
    12198 Axis point 0.00000000 -124.31992430 306.74204089 
    12199 Rotation angle (degrees) 101.11727307 
    12200 Shift along axis 80.90690582 
    12201  
    12202 
    12203 > select #13/A:325
    12204 
    12205 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12206 
    12207 > fitmap #13 inMap #1
    12208 
    12209 Fit molecule fold_r_e_model_3.cif (#13) to map
    12210 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 602 atoms 
    12211 average map value = 3.9, steps = 184 
    12212 shifted from previous position = 17.9 
    12213 rotated from previous position = 36.3 degrees 
    12214 atoms outside contour = 305, contour level = 4.3314 
    12215  
    12216 Position of fold_r_e_model_3.cif (#13) relative to
    12217 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    12218 Matrix rotation and translation 
    12219 0.90081659 0.26383568 -0.34484810 228.11462093 
    12220 0.32857244 -0.93341062 0.14416922 165.60943495 
    12221 -0.28384789 -0.24317760 -0.92752091 262.72564372 
    12222 Axis -0.97463266 -0.15348723 0.16288907 
    12223 Axis point 0.00000000 80.08793942 143.51826262 
    12224 Rotation angle (degrees) 168.53821742 
    12225 Shift along axis -204.95175822 
    12226  
    12227 
    12228 > view matrix models
    12229 > #13,0.90082,0.26384,-0.34485,241.12,0.32857,-0.93341,0.14417,168.37,-0.28385,-0.24318,-0.92752,257.41
    12230 
    12231 > ui mousemode right "rotate selected models"
    12232 
    12233 > view matrix models
    12234 > #13,0.048405,0.5231,-0.8509,261.28,-0.44888,-0.74963,-0.48638,187.23,-0.89228,0.40549,0.19852,266.01
    12235 
    12236 > view matrix models
    12237 > #13,0.32966,0.66655,-0.6686,258.77,0.15907,-0.73728,-0.65659,181.62,-0.9306,0.1101,-0.34908,266.28
    12238 
    12239 > ui mousemode right "translate selected models"
    12240 
    12241 > view matrix models
    12242 > #13,0.32966,0.66655,-0.6686,258.1,0.15907,-0.73728,-0.65659,187.09,-0.9306,0.1101,-0.34908,272.62
    12243 
    12244 > view matrix models
    12245 > #13,0.32966,0.66655,-0.6686,259.51,0.15907,-0.73728,-0.65659,188.01,-0.9306,0.1101,-0.34908,269.98
    12246 
    12247 > view matrix models
    12248 > #13,0.32966,0.66655,-0.6686,259.37,0.15907,-0.73728,-0.65659,189.15,-0.9306,0.1101,-0.34908,269.86
    12249 
    12250 > view matrix models
    12251 > #13,0.32966,0.66655,-0.6686,259.37,0.15907,-0.73728,-0.65659,188.41,-0.9306,0.1101,-0.34908,271.53
    12252 
    12253 > view matrix models
    12254 > #13,0.32966,0.66655,-0.6686,260.17,0.15907,-0.73728,-0.65659,189.35,-0.9306,0.1101,-0.34908,273.19
    12255 
    12256 > view matrix models
    12257 > #13,0.32966,0.66655,-0.6686,261.35,0.15907,-0.73728,-0.65659,187.63,-0.9306,0.1101,-0.34908,274.69
    12258 
    12259 > view matrix models
    12260 > #13,0.32966,0.66655,-0.6686,261.88,0.15907,-0.73728,-0.65659,187.97,-0.9306,0.1101,-0.34908,274.54
    12261 
    12262 > view matrix models
    12263 > #13,0.32966,0.66655,-0.6686,262.25,0.15907,-0.73728,-0.65659,188.07,-0.9306,0.1101,-0.34908,274.61
    12264 
    12265 > view matrix models
    12266 > #13,0.32966,0.66655,-0.6686,262.56,0.15907,-0.73728,-0.65659,188.11,-0.9306,0.1101,-0.34908,273.45
    12267 
    12268 > view matrix models
    12269 > #13,0.32966,0.66655,-0.6686,262.25,0.15907,-0.73728,-0.65659,186.84,-0.9306,0.1101,-0.34908,274.23
    12270 
    12271 > view matrix models
    12272 > #13,0.32966,0.66655,-0.6686,262.26,0.15907,-0.73728,-0.65659,186.94,-0.9306,0.1101,-0.34908,274
    12273 
    12274 > select #5/I:251
    12275 
    12276 22 atoms, 24 bonds, 1 residue, 1 model selected 
    12277 
    12278 > select #5/I:253
    12279 
    12280 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12281 
    12282 > select #5/I:254
    12283 
    12284 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12285 
    12286 > select #5/I:253
    12287 
    12288 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12289 
    12290 > view matrix models
    12291 > #5,-0.48325,0.86819,0.1128,134.2,-0.60459,-0.23776,-0.76022,541.24,-0.6332,-0.43557,0.6398,316.44
    12292 
    12293 > ui mousemode right "translate selected atoms"
    12294 
    12295 > select #5/I:252
    12296 
    12297 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12298 
    12299 > select #5/I:251
    12300 
    12301 22 atoms, 24 bonds, 1 residue, 1 model selected 
    12302 
    12303 > select #5/I:252
    12304 
    12305 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12306 
    12307 > select #5/I:253
    12308 
    12309 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12310 
    12311 > select #5/I:252
    12312 
    12313 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12314 
    12315 > select #5/I:251
    12316 
    12317 22 atoms, 24 bonds, 1 residue, 1 model selected 
    12318 
    12319 > select #5/I:253
    12320 
    12321 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12322 
    12323 > select #5/I:253
    12324 
    12325 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12326 
    12327 > select #5/I:252
    12328 
    12329 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12330 
    12331 > select #5/I:251
    12332 
    12333 22 atoms, 24 bonds, 1 residue, 1 model selected 
    12334 
    12335 > select #5/I:252
    12336 
    12337 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12338 
    12339 > select #5/I:253
    12340 
    12341 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12342 
    12343 > select #5/A:1
    12344 
    12345 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12346 
    12347 > select #5/H:298
    12348 
    12349 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12350 
    12351 > select add #5/H:297
    12352 
    12353 40 atoms, 42 bonds, 2 residues, 1 model selected 
    12354 
    12355 > select add #5/H:296
    12356 
    12357 62 atoms, 66 bonds, 3 residues, 1 model selected 
    12358 
    12359 > select clear
    12360 
    12361 > select add #5/H:297
    12362 
    12363 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12364 
    12365 > select add #5/H:296
    12366 
    12367 42 atoms, 45 bonds, 2 residues, 1 model selected 
    12368 
    12369 > select clear
    12370 
    12371 > select #5/H:296
    12372 
    12373 22 atoms, 24 bonds, 1 residue, 1 model selected 
    12374 
    12375 > select #5/H:218
    12376 
    12377 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12378 
    12379 > select add #5/H:217
    12380 
    12381 42 atoms, 45 bonds, 2 residues, 1 model selected 
    12382 
    12383 > select subtract #5/H:218
    12384 
    12385 22 atoms, 24 bonds, 1 residue, 1 model selected 
    12386 
    12387 > select add #5/H:218
    12388 
    12389 42 atoms, 45 bonds, 2 residues, 1 model selected 
    12390 
    12391 > select clear
    12392 
    12393 > select #5/H:218
    12394 
    12395 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12396 
    12397 > select #5/H:297
    12398 
    12399 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12400 
    12401 > select #5/H:298
    12402 
    12403 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12404 
    12405 > select #5/H:297
    12406 
    12407 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12408 
    12409 > select #5/H:298
    12410 
    12411 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12412 
    12413 > select #5/H:297
    12414 
    12415 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12416 
    12417 > select #5/H:296
    12418 
    12419 22 atoms, 24 bonds, 1 residue, 1 model selected 
    12420 
    12421 > select #5/H:218
    12422 
    12423 20 atoms, 21 bonds, 1 residue, 1 model selected 
    12424 
    12425 > open
    12426 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_00/fold_2024_07_24_00_00_model_0.cif
    12427 
    12428 Chain information for fold_2024_07_24_00_00_model_0.cif #4 
    12429 --- 
    12430 Chain | Description 
    12431 A | . 
    12432  
    12433 
    12434 > open
    12435 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_00/fold_2024_07_24_00_00_model_1.cif
    12436 
    12437 Chain information for fold_2024_07_24_00_00_model_1.cif #6 
    12438 --- 
    12439 Chain | Description 
    12440 A | . 
    12441  
    12442 
    12443 > open
    12444 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_00/fold_2024_07_24_00_00_model_2.cif
    12445 
    12446 Chain information for fold_2024_07_24_00_00_model_2.cif #7 
    12447 --- 
    12448 Chain | Description 
    12449 A | . 
    12450  
    12451 
    12452 > open
    12453 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_00/fold_2024_07_24_00_00_model_3.cif
    12454 
    12455 Chain information for fold_2024_07_24_00_00_model_3.cif #8 
    12456 --- 
    12457 Chain | Description 
    12458 A | . 
    12459  
    12460 
    12461 > open
    12462 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_00/fold_2024_07_24_00_00_model_4.cif
    12463 
    12464 Chain information for fold_2024_07_24_00_00_model_4.cif #9 
    12465 --- 
    12466 Chain | Description 
    12467 A | . 
    12468  
    12469 
    12470 > hide #6 models
    12471 
    12472 > hide #7 models
    12473 
    12474 > hide #8 models
    12475 
    12476 > hide #9 models
    12477 
    12478 > hide #11 models
    12479 
    12480 > hide #!13 models
    12481 
    12482 Drag select of 22 residues, 66 shapes 
    12483 
    12484 > ui mousemode right "translate selected models"
    12485 
    12486 > view matrix models #4,1,0,0,-89.439,0,1,0,67.511,0,0,1,308.24
    12487 
    12488 > view matrix models #4,1,0,0,214.37,0,1,0,271.76,0,0,1,186.97
    12489 
    12490 > view matrix models #4,1,0,0,245.57,0,1,0,209.24,0,0,1,284.73
    12491 
    12492 > ui mousemode right "rotate selected models"
    12493 
    12494 > view matrix models
    12495 > #4,-0.12355,-0.98914,0.079575,245.14,0.87062,-0.069562,0.48702,210.02,-0.4762,0.12945,0.86976,284.37
    12496 
    12497 > view matrix models
    12498 > #4,-0.83034,-0.19746,0.5211,246.37,0.39886,0.44245,0.80321,210.84,-0.38916,0.87478,-0.28863,282.46
    12499 
    12500 > view matrix models
    12501 > #4,-0.52007,0.42818,0.73905,247,0.76991,0.60965,0.18859,209.68,-0.36981,0.66708,-0.64672,281.68
    12502 
    12503 > ui mousemode right "translate selected models"
    12504 
    12505 > view matrix models
    12506 > #4,-0.52007,0.42818,0.73905,220.42,0.76991,0.60965,0.18859,257.73,-0.36981,0.66708,-0.64672,268.04
    12507 
    12508 > view matrix models
    12509 > #4,-0.52007,0.42818,0.73905,217.46,0.76991,0.60965,0.18859,262.95,-0.36981,0.66708,-0.64672,266.15
    12510 
    12511 > hide #4 models
    12512 
    12513 > show #6 models
    12514 
    12515 > hide #!5 models
    12516 
    12517 > show #7 models
    12518 
    12519 > hide #6 models
    12520 
    12521 > show #6 models
    12522 
    12523 > hide #7 models
    12524 
    12525 > hide #6 models
    12526 
    12527 > show #7 models
    12528 
    12529 > show #8 models
    12530 
    12531 > hide #7 models
    12532 
    12533 > hide #8 models
    12534 
    12535 > show #9 models
    12536 
    12537 Drag select of 22 residues, 66 shapes 
    12538 
    12539 > show #!5 models
    12540 
    12541 > view matrix models #9,1,0,0,160.61,0,1,0,56.207,0,0,1,359.08
    12542 
    12543 > view matrix models #9,1,0,0,279.79,0,1,0,231.97,0,0,1,278.57
    12544 
    12545 > view matrix models #9,1,0,0,243.69,0,1,0,221.21,0,0,1,245.67
    12546 
    12547 > show #6 models
    12548 
    12549 > hide #6 models
    12550 
    12551 > show #6 models
    12552 
    12553 > hide #6 models
    12554 
    12555 > show #11 models
    12556 
    12557 > show #!13 models
    12558 
    12559 > view matrix models #9,1,0,0,200.32,0,1,0,209.78,0,0,1,269.93
    12560 
    12561 > ui mousemode right "rotate selected models"
    12562 
    12563 > view matrix models
    12564 > #9,0.019221,-0.99899,-0.040494,201.25,0.55867,-0.022858,0.82907,205.98,-0.82916,-0.038558,0.55767,272.42
    12565 
    12566 > view matrix models
    12567 > #9,0.29128,-0.90268,0.31675,200.36,0.61317,0.43032,0.66245,206.78,-0.73428,0.0012611,0.67884,272.15
    12568 
    12569 > ui mousemode right "translate selected models"
    12570 
    12571 > view matrix models
    12572 > #9,0.29128,-0.90268,0.31675,185.13,0.61317,0.43032,0.66245,240.96,-0.73428,0.0012611,0.67884,268.68
    12573 
    12574 > view matrix models
    12575 > #9,0.29128,-0.90268,0.31675,182.93,0.61317,0.43032,0.66245,240.47,-0.73428,0.0012611,0.67884,265.18
    12576 
    12577 > view matrix models
    12578 > #9,0.29128,-0.90268,0.31675,182.45,0.61317,0.43032,0.66245,240.79,-0.73428,0.0012611,0.67884,264.3
    12579 
    12580 > view matrix models
    12581 > #9,0.29128,-0.90268,0.31675,183.02,0.61317,0.43032,0.66245,240.57,-0.73428,0.0012611,0.67884,264.97
    12582 
    12583 > show #4 models
    12584 
    12585 > fitmap #9 inMap #1
    12586 
    12587 Fit molecule fold_2024_07_24_00_00_model_4.cif (#9) to map
    12588 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 475 atoms 
    12589 average map value = 3.709, steps = 160 
    12590 shifted from previous position = 9.38 
    12591 rotated from previous position = 39.7 degrees 
    12592 atoms outside contour = 248, contour level = 4.3314 
    12593  
    12594 Position of fold_2024_07_24_00_00_model_4.cif (#9) relative to
    12595 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    12596 Matrix rotation and translation 
    12597 0.36315455 -0.92335959 0.12460277 191.71396872 
    12598 0.92187480 0.37548460 0.09569836 240.44576523 
    12599 -0.13515042 0.08011486 0.98758087 260.75085779 
    12600 Axis -0.00836252 0.13939052 0.99020218 
    12601 Axis point -50.79123153 245.28491204 0.00000000 
    12602 Rotation angle (degrees) 68.70868451 
    12603 Shift along axis 290.10871394 
    12604  
    12605 
    12606 > select #4/A:6
    12607 
    12608 22 atoms, 24 bonds, 1 residue, 1 model selected 
    12609 
    12610 > view matrix models
    12611 > #4,-0.52007,0.42818,0.73905,189.89,0.76991,0.60965,0.18859,247.89,-0.36981,0.66708,-0.64672,249.24
    12612 
    12613 > view matrix models
    12614 > #4,-0.52007,0.42818,0.73905,196.93,0.76991,0.60965,0.18859,240.4,-0.36981,0.66708,-0.64672,259.16
    12615 
    12616 > fitmap #4 inMap #1
    12617 
    12618 Fit molecule fold_2024_07_24_00_00_model_0.cif (#4) to map
    12619 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 475 atoms 
    12620 average map value = 3.75, steps = 140 
    12621 shifted from previous position = 3.68 
    12622 rotated from previous position = 71.6 degrees 
    12623 atoms outside contour = 257, contour level = 4.3314 
    12624  
    12625 Position of fold_2024_07_24_00_00_model_0.cif (#4) relative to
    12626 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    12627 Matrix rotation and translation 
    12628 0.14398182 -0.44377865 0.88449406 196.05124852 
    12629 0.96677063 0.25387948 -0.02999579 241.18020947 
    12630 -0.21124340 0.85942173 0.46558620 260.51866126 
    12631 Axis 0.44574894 0.54915020 0.70692428 
    12632 Axis point 3.12732256 29.95027363 0.00000000 
    12633 Rotation angle (degrees) 93.91498689 
    12634 Shift along axis 404.00076386 
    12635  
    12636 
    12637 > hide #4 models
    12638 
    12639 > show #4 models
    12640 
    12641 > hide #4 models
    12642 
    12643 > show #4 models
    12644 
    12645 > hide #9 models
    12646 
    12647 > show #9 models
    12648 
    12649 > close #4
    12650 
    12651 > hide #9 models
    12652 
    12653 Drag select of 86 atoms, 7 residues, 97 bonds 
    12654 
    12655 > delete atoms sel
    12656 
    12657 > delete bonds sel
    12658 
    12659 Drag select of 44 atoms, 2 residues, 1 pseudobonds, 48 bonds 
    12660 
    12661 > delete atoms (#!5 & sel)
    12662 
    12663 > delete bonds (#!5 & sel)
    12664 
    12665 > show #9 models
    12666 
    12667 > open
    12668 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_10/fold_2024_07_24_00_10_model_0.cif
    12669 
    12670 Chain information for fold_2024_07_24_00_10_model_0.cif #4 
    12671 --- 
    12672 Chain | Description 
    12673 A | . 
    12674  
    12675 
    12676 > open
    12677 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_10/fold_2024_07_24_00_10_model_1.cif
    12678 
    12679 Chain information for fold_2024_07_24_00_10_model_1.cif #10 
    12680 --- 
    12681 Chain | Description 
    12682 A | . 
    12683  
    12684 
    12685 > open
    12686 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_10/fold_2024_07_24_00_10_model_2.cif
    12687 
    12688 Chain information for fold_2024_07_24_00_10_model_2.cif #12 
    12689 --- 
    12690 Chain | Description 
    12691 A | . 
    12692  
    12693 
    12694 > open
    12695 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_10/fold_2024_07_24_00_10_model_3.cif
    12696 
    12697 Chain information for fold_2024_07_24_00_10_model_3.cif #16 
    12698 --- 
    12699 Chain | Description 
    12700 A | . 
    12701  
    12702 
    12703 > open
    12704 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_10/fold_2024_07_24_00_10_model_4.cif
    12705 
    12706 Chain information for fold_2024_07_24_00_10_model_4.cif #18 
    12707 --- 
    12708 Chain | Description 
    12709 A | . 
    12710  
    12711 
    12712 > hide #4 models
    12713 
    12714 > show #4 models
    12715 
    12716 > hide #4 models
    12717 
    12718 > show #4 models
    12719 
    12720 > hide #!1 models
    12721 
    12722 > hide #!5 models
    12723 
    12724 > hide #9 models
    12725 
    12726 > hide #10 models
    12727 
    12728 > show #10 models
    12729 
    12730 > hide #4 models
    12731 
    12732 > show #4 models
    12733 
    12734 > hide #4 models
    12735 
    12736 > hide #10 models
    12737 
    12738 > hide #11 models
    12739 
    12740 > hide #12 models
    12741 
    12742 > hide #!13 models
    12743 
    12744 > show #4 models
    12745 
    12746 > hide #16 models
    12747 
    12748 > hide #18 models
    12749 
    12750 > show #10 models
    12751 
    12752 > hide #4 models
    12753 
    12754 > close #4
    12755 
    12756 > show #12 models
    12757 
    12758 > hide #10 models
    12759 
    12760 > show #10 models
    12761 
    12762 > hide #12 models
    12763 
    12764 > hide #10 models
    12765 
    12766 > show #12 models
    12767 
    12768 > show #16 models
    12769 
    12770 > hide #12 models
    12771 
    12772 > show #18 models
    12773 
    12774 > hide #16 models
    12775 
    12776 > close #18
    12777 
    12778 > close #16
    12779 
    12780 > show #10 models
    12781 
    12782 > close #12
    12783 
    12784 Drag select of 31 residues, 93 shapes 
    12785 
    12786 > show #!1 models
    12787 
    12788 > show #!5 models
    12789 
    12790 > view matrix models #10,1,0,0,194.14,0,1,0,299.41,0,0,1,384.01
    12791 
    12792 > view matrix models #10,1,0,0,209.8,0,1,0,246.71,0,0,1,297.53
    12793 
    12794 > view matrix models #10,1,0,0,166.93,0,1,0,254.17,0,0,1,276.73
    12795 
    12796 > ui mousemode right "rotate selected models"
    12797 
    12798 > view matrix models
    12799 > #10,-0.38584,0.88383,0.26453,172.11,-0.87884,-0.26489,-0.39683,250.22,-0.28066,-0.38559,0.87895,275.4
    12800 
    12801 > view matrix models
    12802 > #10,-0.96389,0.25973,0.058813,170.09,-0.26246,-0.88914,-0.37488,247.51,-0.045074,-0.37678,0.92521,275.34
    12803 
    12804 > view matrix models
    12805 > #10,-0.8329,0.52853,-0.1641,170.18,-0.49758,-0.84499,-0.196,248.72,-0.24225,-0.081593,0.96678,276.74
    12806 
    12807 > ui mousemode right "translate selected models"
    12808 
    12809 > view matrix models
    12810 > #10,-0.8329,0.52853,-0.1641,186.11,-0.49758,-0.84499,-0.196,218.37,-0.24225,-0.081593,0.96678,298.11
    12811 
    12812 > view matrix models
    12813 > #10,-0.8329,0.52853,-0.1641,187.72,-0.49758,-0.84499,-0.196,220.2,-0.24225,-0.081593,0.96678,294.36
    12814 
    12815 > fitmap #10 inMap #1
    12816 
    12817 Fit molecule fold_2024_07_24_00_10_model_1.cif (#10) to map
    12818 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 670 atoms 
    12819 average map value = 3.082, steps = 156 
    12820 shifted from previous position = 8.74 
    12821 rotated from previous position = 38.3 degrees 
    12822 atoms outside contour = 415, contour level = 4.3314 
    12823  
    12824 Position of fold_2024_07_24_00_10_model_1.cif (#10) relative to
    12825 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    12826 Matrix rotation and translation 
    12827 -0.61087475 0.66187014 0.43446514 194.59674771 
    12828 -0.78265881 -0.58764944 -0.20521530 224.25171490 
    12829 0.11948732 -0.46539882 0.87699870 298.22551480 
    12830 Axis -0.17331822 0.20981881 -0.96225613 
    12831 Axis point 136.58827762 110.07808425 0.00000000 
    12832 Rotation angle (degrees) 131.35806996 
    12833 Shift along axis -273.64426489 
    12834  
    12835 
    12836 > view matrix models
    12837 > #10,-0.61087,0.66187,0.43447,195.27,-0.78266,-0.58765,-0.20522,223.98,0.11949,-0.4654,0.877,298.77
    12838 
    12839 > fitmap #10 inMap #1
    12840 
    12841 Fit molecule fold_2024_07_24_00_10_model_1.cif (#10) to map
    12842 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 670 atoms 
    12843 average map value = 3.082, steps = 68 
    12844 shifted from previous position = 0.906 
    12845 rotated from previous position = 0.0665 degrees 
    12846 atoms outside contour = 415, contour level = 4.3314 
    12847  
    12848 Position of fold_2024_07_24_00_10_model_1.cif (#10) relative to
    12849 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    12850 Matrix rotation and translation 
    12851 -0.61011404 0.66203957 0.43527515 194.59298573 
    12852 -0.78314945 -0.58721561 -0.20458440 224.24712603 
    12853 0.12015740 -0.46570531 0.87674441 298.22605124 
    12854 Axis -0.17384686 0.20979642 -0.96216565 
    12855 Axis point 136.56482348 110.08157520 0.00000000 
    12856 Rotation angle (degrees) 131.32219336 
    12857 Shift along axis -273.72599671 
    12858  
    12859 
    12860 > show #6 models
    12861 
    12862 > hide #6 models
    12863 
    12864 > show #!13 models
    12865 
    12866 > show #11 models
    12867 
    12868 > show #25 models
    12869 
    12870 > hide #25 models
    12871 
    12872 > close #3
    12873 
    12874 > show #6 models
    12875 
    12876 > hide #6 models
    12877 
    12878 > show #7 models
    12879 
    12880 > hide #7 models
    12881 
    12882 > show #8 models
    12883 
    12884 > hide #8 models
    12885 
    12886 > show #9 models
    12887 
    12888 > close #8
    12889 
    12890 > close #7
    12891 
    12892 > close #6
    12893 
    12894 > hide #10 models
    12895 
    12896 > show #10 models
    12897 
    12898 > open
    12899 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_12/fold_2024_07_24_00_12_model_0.cif
    12900 
    12901 Chain information for fold_2024_07_24_00_12_model_0.cif #3 
    12902 --- 
    12903 Chain | Description 
    12904 A | . 
    12905  
    12906 
    12907 > open
    12908 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_12/fold_2024_07_24_00_12_model_1.cif
    12909 
    12910 Chain information for fold_2024_07_24_00_12_model_1.cif #4 
    12911 --- 
    12912 Chain | Description 
    12913 A | . 
    12914  
    12915 
    12916 > open
    12917 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_12/fold_2024_07_24_00_12_model_2.cif
    12918 
    12919 Chain information for fold_2024_07_24_00_12_model_2.cif #6 
    12920 --- 
    12921 Chain | Description 
    12922 A | . 
    12923  
    12924 
    12925 > open
    12926 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_12/fold_2024_07_24_00_12_model_3.cif
    12927 
    12928 Chain information for fold_2024_07_24_00_12_model_3.cif #7 
    12929 --- 
    12930 Chain | Description 
    12931 A | . 
    12932  
    12933 
    12934 > open
    12935 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_12/fold_2024_07_24_00_12_model_4.cif
    12936 
    12937 Chain information for fold_2024_07_24_00_12_model_4.cif #8 
    12938 --- 
    12939 Chain | Description 
    12940 A | . 
    12941  
    12942 
    12943 > hide #4 models
    12944 
    12945 > hide #6 models
    12946 
    12947 > hide #7 models
    12948 
    12949 > hide #8 models
    12950 
    12951 Drag select of 21 residues, 61 shapes 
    12952 
    12953 > view matrix models #3,1,0,0,1.6777,0,1,0,19.927,0,0,1,57.188
    12954 
    12955 > ui mousemode right "rotate selected models"
    12956 
    12957 > view matrix models
    12958 > #3,0.08017,-0.8385,0.53898,-1.5718,-0.43937,0.45563,0.77418,17.349,-0.89472,-0.29888,-0.33189,57.503
    12959 
    12960 > view matrix models
    12961 > #3,-0.86448,-0.44353,0.23654,-2.5357,-0.48321,0.86292,-0.14794,19.566,-0.1385,-0.24219,-0.96029,60.382
    12962 
    12963 > view matrix models
    12964 > #3,-0.83371,-0.38132,0.39941,-3.0166,-0.38278,0.92039,0.079721,19.242,-0.39801,-0.086422,-0.9133,59.91
    12965 
    12966 > view matrix models
    12967 > #3,-0.65555,-0.14764,0.74057,-3.3931,-0.034236,0.9855,0.16616,19.524,-0.75437,0.083574,-0.65111,59.022
    12968 
    12969 > show #6 models
    12970 
    12971 > show #4 models
    12972 
    12973 > hide #6 models
    12974 
    12975 > view matrix models
    12976 > #3,-0.65474,-0.14893,0.74104,-3.3941,-0.034155,0.98522,0.16783,19.521,-0.75508,0.084573,-0.65015,59.02
    12977 
    12978 > view matrix models
    12979 > #3,-0.75423,-0.18385,0.63035,-3.3472,-0.13631,0.98293,0.12358,19.458,-0.64231,0.0072871,-0.76641,59.352
    12980 
    12981 > select #4/A:24
    12982 
    12983 23 atoms, 25 bonds, 1 residue, 1 model selected 
    12984 
    12985 > view matrix models
    12986 > #4,0.4551,0.23702,0.85831,-0.98735,-0.84944,0.40467,0.33865,-0.94095,-0.26707,-0.88321,0.3855,0.12835
    12987 
    12988 > view matrix models
    12989 > #4,0.067452,-0.87273,0.48352,-1.0476,-0.30079,-0.47987,-0.82417,0.44372,0.9513,-0.089847,-0.29488,1.6634
    12990 
    12991 > view matrix models
    12992 > #4,-0.895,-0.44214,-0.059112,-0.67588,-0.091677,0.31201,-0.94565,0.76974,0.43655,-0.84093,-0.31978,1.3764
    12993 
    12994 > view matrix models
    12995 > #4,-0.72135,-0.69096,-0.047257,-0.65664,0.028204,0.03887,-0.99885,0.82926,0.692,-0.72185,-0.0085513,1.2468
    12996 
    12997 > view matrix models
    12998 > #4,-0.7182,-0.6748,-0.16979,-0.50108,0.2057,0.027202,-0.97824,0.89736,0.66473,-0.7375,0.11927,1.1662
    12999 
    13000 > view matrix models
    13001 > #4,-0.7631,-0.63198,-0.13519,-0.55949,0.13983,0.042774,-0.98925,0.87502,0.63097,-0.7738,0.055727,1.2197
    13002 
    13003 > view matrix models
    13004 > #4,-0.7985,-0.58698,-0.13364,-0.57688,0.10948,0.076703,-0.99103,0.86289,0.59196,-0.80596,0.0030147,1.2538
    13005 
    13006 > view matrix models
    13007 > #4,-0.82288,-0.54865,-0.14781,-0.57145,0.10462,0.1094,-0.98848,0.86045,0.5585,-0.82887,-0.032628,1.2717
    13008 
    13009 > select #3/A:5
    13010 
    13011 23 atoms, 25 bonds, 1 residue, 1 model selected 
    13012 
    13013 > view matrix models
    13014 > #3,0.45735,0.4735,0.75275,-0.402,0.46383,0.5952,-0.6562,22.38,-0.75875,0.64926,0.052586,57.658
    13015 
    13016 > view matrix models
    13017 > #3,0.92659,0.3668,0.082963,1.54,0.0094311,0.19787,-0.98018,21.929,-0.37595,0.90901,0.17989,58.221
    13018 
    13019 > view matrix models
    13020 > #3,0.95431,0.29812,-0.020142,1.7405,-0.062233,0.13238,-0.98924,21.726,-0.29225,0.9453,0.14488,58.512
    13021 
    13022 Drag select of 8 residues, 18 shapes 
    13023 
    13024 > view matrix models
    13025 > #3,0.89215,0.41638,0.17519,1.34,-0.015168,0.41522,-0.9096,21.87,-0.45148,0.80884,0.37675,57.446
    13026 
    13027 > ui mousemode right "translate selected models"
    13028 
    13029 > view matrix models
    13030 > #3,0.89215,0.41638,0.17519,2.0185,-0.015168,0.41522,-0.9096,131.67,-0.45148,0.80884,0.37675,312.8
    13031 
    13032 > view matrix models
    13033 > #3,0.89215,0.41638,0.17519,163.78,-0.015168,0.41522,-0.9096,159.93,-0.45148,0.80884,0.37675,415.4
    13034 
    13035 > view matrix models
    13036 > #3,0.89215,0.41638,0.17519,163.52,-0.015168,0.41522,-0.9096,248.74,-0.45148,0.80884,0.37675,269.87
    13037 
    13038 > select #10/A:28
    13039 
    13040 22 atoms, 24 bonds, 1 residue, 1 model selected 
    13041 
    13042 > ui mousemode right "rotate selected models"
    13043 
    13044 > view matrix models
    13045 > #10,-0.61456,0.65886,0.43385,194.58,-0.77962,-0.59125,-0.20646,224.22,0.12049,-0.46511,0.87701,298.23
    13046 
    13047 > ui mousemode right "translate selected models"
    13048 
    13049 > view matrix models
    13050 > #10,-0.61456,0.65886,0.43385,181.38,-0.77962,-0.59125,-0.20646,249.66,0.12049,-0.46511,0.87701,281.82
    13051 
    13052 > select #3/A:18
    13053 
    13054 20 atoms, 21 bonds, 1 residue, 1 model selected 
    13055 
    13056 > view matrix models
    13057 > #3,0.89215,0.41638,0.17519,181.39,-0.015168,0.41522,-0.9096,218.48,-0.45148,0.80884,0.37675,304.77
    13058 
    13059 > ui mousemode right "rotate selected models"
    13060 
    13061 > view matrix models
    13062 > #3,-0.61199,0.045362,0.78956,177.01,-0.15,0.97358,-0.1722,216.75,-0.77651,-0.22381,-0.58901,305.91
    13063 
    13064 > view matrix models
    13065 > #3,-0.48869,0.055912,0.87066,177.07,-0.43166,0.85175,-0.29698,216.42,-0.75819,-0.52096,-0.39211,305.31
    13066 
    13067 > view matrix models
    13068 > #3,-0.77339,0.13499,0.61939,177.19,0.29746,0.9401,0.16653,216.8,-0.5598,0.31304,-0.76722,307.28
    13069 
    13070 > fitmap #3 inMap #1
    13071 
    13072 Fit molecule fold_2024_07_24_00_12_model_0.cif (#3) to map
    13073 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 537 atoms 
    13074 average map value = 3.48, steps = 368 
    13075 shifted from previous position = 18.1 
    13076 rotated from previous position = 32.3 degrees 
    13077 atoms outside contour = 295, contour level = 4.3314 
    13078  
    13079 Position of fold_2024_07_24_00_12_model_0.cif (#3) relative to
    13080 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    13081 Matrix rotation and translation 
    13082 -0.79958057 0.18418763 0.57161686 189.83562000 
    13083 0.54147065 0.63280079 0.55350944 225.27325013 
    13084 -0.25977001 0.75208914 -0.60570741 316.75024116 
    13085 Axis 0.21434731 0.89740057 0.38565197 
    13086 Axis point 92.09367241 0.00000000 94.70069637 
    13087 Rotation angle (degrees) 152.40494893 
    13088 Shift along axis 365.00645281 
    13089  
    13090 
    13091 > select #1
    13092 
    13093 2 models selected 
    13094 
    13095 > select clear
    13096 
    13097 > select #3/A:20
    13098 
    13099 22 atoms, 24 bonds, 1 residue, 1 model selected 
    13100 
    13101 > ui mousemode right "translate selected models"
    13102 
    13103 > view matrix models
    13104 > #3,-0.79958,0.18419,0.57162,191.03,0.54147,0.6328,0.55351,217.86,-0.25977,0.75209,-0.60571,302.64
    13105 
    13106 > ui mousemode right "rotate selected models"
    13107 
    13108 > view matrix models
    13109 > #3,-0.7585,-0.14938,0.63432,190.87,0.097989,0.93616,0.33763,217.36,-0.64427,0.31825,-0.69544,301.72
    13110 
    13111 > view matrix models
    13112 > #3,-0.80912,-0.21157,0.54823,190.88,-0.078217,0.96341,0.25635,217.23,-0.58241,0.16454,-0.79607,301.87
    13113 
    13114 > fitmap #3 inMap #1
    13115 
    13116 Fit molecule fold_2024_07_24_00_12_model_0.cif (#3) to map
    13117 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 537 atoms 
    13118 average map value = 3.205, steps = 176 
    13119 shifted from previous position = 8.97 
    13120 rotated from previous position = 42.7 degrees 
    13121 atoms outside contour = 325, contour level = 4.3314 
    13122  
    13123 Position of fold_2024_07_24_00_12_model_0.cif (#3) relative to
    13124 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    13125 Matrix rotation and translation 
    13126 -0.84402259 -0.52537755 -0.10772330 194.47128117 
    13127 -0.52564935 0.77054396 0.36049241 225.30352311 
    13128 -0.10638909 0.36088842 -0.92652087 303.83405667 
    13129 Axis 0.27926575 -0.94088846 -0.19167561 
    13130 Axis point 130.62244474 0.00000000 129.01586869 
    13131 Rotation angle (degrees) 179.95937638 
    13132 Shift along axis -215.91389644 
    13133  
    13134 
    13135 > ui mousemode right "translate selected models"
    13136 
    13137 > view matrix models
    13138 > #3,-0.84402,-0.52538,-0.10772,197.92,-0.52565,0.77054,0.36049,217.64,-0.10639,0.36089,-0.92652,297.2
    13139 
    13140 > view matrix models
    13141 > #3,-0.84402,-0.52538,-0.10772,196.95,-0.52565,0.77054,0.36049,219.61,-0.10639,0.36089,-0.92652,296.35
    13142 
    13143 > view matrix models
    13144 > #3,-0.84402,-0.52538,-0.10772,197.34,-0.52565,0.77054,0.36049,218.33,-0.10639,0.36089,-0.92652,293.69
    13145 
    13146 > view matrix models
    13147 > #3,-0.84402,-0.52538,-0.10772,195.31,-0.52565,0.77054,0.36049,221.5,-0.10639,0.36089,-0.92652,291.11
    13148 
    13149 > view matrix models
    13150 > #3,-0.84402,-0.52538,-0.10772,197.06,-0.52565,0.77054,0.36049,217.02,-0.10639,0.36089,-0.92652,291.6
    13151 
    13152 > fitmap #3 inMap #1
    13153 
    13154 Fit molecule fold_2024_07_24_00_12_model_0.cif (#3) to map
    13155 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 537 atoms 
    13156 average map value = 3.546, steps = 148 
    13157 shifted from previous position = 2.27 
    13158 rotated from previous position = 21.9 degrees 
    13159 atoms outside contour = 299, contour level = 4.3314 
    13160  
    13161 Position of fold_2024_07_24_00_12_model_0.cif (#3) relative to
    13162 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    13163 Matrix rotation and translation 
    13164 -0.76578885 -0.61926528 -0.17342995 197.93409772 
    13165 -0.56494091 0.51895212 0.64150641 218.88572578 
    13166 -0.30726081 0.58923613 -0.74725604 291.86945676 
    13167 Axis -0.34029366 0.87127512 0.35366636 
    13168 Axis point 146.38508250 0.00000000 95.43988212 
    13169 Rotation angle (degrees) 175.59524789 
    13170 Shift along axis 226.57837696 
    13171  
    13172 
    13173 > ui mousemode right "rotate selected models"
    13174 
    13175 > view matrix models
    13176 > #3,-0.61593,-0.62011,-0.4859,198.85,-0.77638,0.37312,0.50795,218.58,-0.13368,0.69011,-0.71125,292.25
    13177 
    13178 > select #1
    13179 
    13180 2 models selected 
    13181 
    13182 > select clear
    13183 
    13184 > select #10/A:25
    13185 
    13186 23 atoms, 25 bonds, 1 residue, 1 model selected 
    13187 
    13188 > view matrix models
    13189 > #10,-0.8284,0.022309,-0.5597,176.01,0.26691,-0.86275,-0.42944,246.49,-0.49246,-0.50514,0.70875,281.85
    13190 
    13191 > view matrix models
    13192 > #10,-0.88056,0.055941,-0.47062,176.54,0.19062,-0.86735,-0.45976,246.45,-0.43391,-0.49455,0.75309,281.98
    13193 
    13194 > ui mousemode right "translate selected models"
    13195 
    13196 > view matrix models
    13197 > #10,-0.88056,0.055941,-0.47062,174.07,0.19062,-0.86735,-0.45976,251.59,-0.43391,-0.49455,0.75309,279.88
    13198 
    13199 > view matrix models
    13200 > #10,-0.88056,0.055941,-0.47062,175.3,0.19062,-0.86735,-0.45976,254.19,-0.43391,-0.49455,0.75309,275.3
    13201 
    13202 > ui mousemode right "rotate selected models"
    13203 
    13204 > view matrix models
    13205 > #10,-0.18853,0.043078,-0.98112,172.22,0.76014,-0.62615,-0.17356,255.17,-0.6218,-0.77851,0.085304,272.32
    13206 
    13207 > view matrix models
    13208 > #10,-0.85983,-0.18382,-0.47634,174.45,0.46591,-0.66409,-0.58474,254.18,-0.20884,-0.7247,0.65665,274.09
    13209 
    13210 > ui mousemode right "translate selected models"
    13211 
    13212 > view matrix models
    13213 > #10,-0.85983,-0.18382,-0.47634,175.37,0.46591,-0.66409,-0.58474,253.33,-0.20884,-0.7247,0.65665,277.59
    13214 
    13215 > view matrix models
    13216 > #10,-0.85983,-0.18382,-0.47634,181.43,0.46591,-0.66409,-0.58474,252.36,-0.20884,-0.7247,0.65665,278.28
    13217 
    13218 > view matrix models
    13219 > #10,-0.85983,-0.18382,-0.47634,181.2,0.46591,-0.66409,-0.58474,255.18,-0.20884,-0.7247,0.65665,276.21
    13220 
    13221 > fitmap #10 inMap #1
    13222 
    13223 Fit molecule fold_2024_07_24_00_10_model_1.cif (#10) to map
    13224 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 670 atoms 
    13225 average map value = 4.072, steps = 180 
    13226 shifted from previous position = 7.25 
    13227 rotated from previous position = 37.2 degrees 
    13228 atoms outside contour = 316, contour level = 4.3314 
    13229  
    13230 Position of fold_2024_07_24_00_10_model_1.cif (#10) relative to
    13231 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    13232 Matrix rotation and translation 
    13233 -0.46364094 -0.14145913 -0.87465787 187.43976046 
    13234 0.56291215 -0.80936824 -0.16749016 253.53641587 
    13235 -0.68422729 -0.57001084 0.45488531 272.84492349 
    13236 Axis -0.48303137 -0.22851979 0.84525700 
    13237 Axis point 136.52350975 192.97304945 0.00000000 
    13238 Rotation angle (degrees) 155.37603783 
    13239 Shift along axis 82.14670946 
    13240  
    13241 
    13242 > hide #3 models
    13243 
    13244 > show #3 models
    13245 
    13246 > hide #4 models
    13247 
    13248 > show #4 models
    13249 
    13250 > close #4
    13251 
    13252 > close #3
    13253 
    13254 > hide #9 models
    13255 
    13256 > show #9 models
    13257 
    13258 > hide #10 models
    13259 
    13260 > close #10
    13261 
    13262 > open
    13263 > /Users/lingxiaobin/Downloads/fold_2024_07_24_00_24/fold_2024_07_24_00_24_model_0.cif
    13264 
    13265 Chain information for fold_2024_07_24_00_24_model_0.cif #3 
    13266 --- 
    13267 Chain | Description 
    13268 A | . 
    13269  
    13270 Drag select of 24 residues, 72 shapes 
    13271 
    13272 > view matrix models #3,1,0,0,-16.388,0,1,0,247.86,0,0,1,296.72
    13273 
    13274 > view matrix models #3,1,0,0,185.4,0,1,0,385.48,0,0,1,282.27
    13275 
    13276 > view matrix models #3,1,0,0,171.5,0,1,0,272.74,0,0,1,298.62
    13277 
    13278 > view matrix models #3,1,0,0,232.44,0,1,0,280,0,0,1,296
    13279 
    13280 > ui mousemode right "rotate selected models"
    13281 
    13282 > view matrix models
    13283 > #3,-0.5702,0.037274,0.82066,226.64,-0.81491,-0.152,-0.5593,277.76,0.10389,-0.98768,0.11705,296.95
    13284 
    13285 > view matrix models
    13286 > #3,-0.82183,-0.23843,-0.51744,226.24,0.4758,0.21233,-0.85354,282.53,0.31338,-0.94766,-0.061053,297.87
    13287 
    13288 > view matrix models
    13289 > #3,-0.66189,0.5287,-0.53139,226.63,0.73661,0.59015,-0.33034,283.17,0.13895,-0.61008,-0.78006,298.01
    13290 
    13291 > view matrix models
    13292 > #3,-0.34231,0.39854,-0.85088,228.19,0.90792,0.37344,-0.19034,283.64,0.2419,-0.83768,-0.48967,297.91
    13293 
    13294 > view matrix models
    13295 > #3,-0.50578,0.4126,-0.7576,227.43,0.82451,0.48951,-0.28385,283.44,0.25374,-0.7682,-0.58778,298.05
    13296 
    13297 > ui mousemode right "translate selected models"
    13298 
    13299 > view matrix models
    13300 > #3,-0.50578,0.4126,-0.7576,229.26,0.82451,0.48951,-0.28385,273.24,0.25374,-0.7682,-0.58778,277.42
    13301 
    13302 > view matrix models
    13303 > #3,-0.50578,0.4126,-0.7576,172.61,0.82451,0.48951,-0.28385,248.25,0.25374,-0.7682,-0.58778,280.18
    13304 
    13305 > view matrix models
    13306 > #3,-0.50578,0.4126,-0.7576,174.02,0.82451,0.48951,-0.28385,248.89,0.25374,-0.7682,-0.58778,281.87
    13307 
    13308 > view matrix models
    13309 > #3,-0.50578,0.4126,-0.7576,176.96,0.82451,0.48951,-0.28385,254.11,0.25374,-0.7682,-0.58778,276.78
    13310 
    13311 > fitmap #3 inMap #1
    13312 
    13313 Fit molecule fold_2024_07_24_00_24_model_0.cif (#3) to map
    13314 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 521 atoms 
    13315 average map value = 4.189, steps = 140 
    13316 shifted from previous position = 9.24 
    13317 rotated from previous position = 25.3 degrees 
    13318 atoms outside contour = 227, contour level = 4.3314 
    13319  
    13320 Position of fold_2024_07_24_00_24_model_0.cif (#3) relative to
    13321 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    13322 Matrix rotation and translation 
    13323 -0.54409587 0.71214428 -0.44363296 186.14499858 
    13324 0.83875665 0.44834675 -0.30898620 254.30058657 
    13325 -0.02114136 -0.54021821 -0.84125937 279.32548224 
    13326 Axis -0.46432685 -0.84838682 0.25424474 
    13327 Axis point -1.72188484 0.00000000 183.64234518 
    13328 Rotation angle (degrees) 165.58183033 
    13329 Shift along axis -231.16035064 
    13330  
    13331 
    13332 > open
    13333 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_25/fold_2024_07_24_00_25_model_0.cif
    13334 
    13335 Chain information for fold_2024_07_24_00_25_model_0.cif #4 
    13336 --- 
    13337 Chain | Description 
    13338 A | . 
    13339  
    13340 Drag select of 32 residues, 96 shapes 
    13341 
    13342 > view matrix models #4,1,0,0,234.47,0,1,0,189.79,0,0,1,307.33
    13343 
    13344 > view matrix models #4,1,0,0,197.82,0,1,0,220.3,0,0,1,275.01
    13345 
    13346 > ui mousemode right "rotate selected models"
    13347 
    13348 > view matrix models
    13349 > #4,0.70596,-0.43866,0.55606,196.96,-0.284,-0.89456,-0.34513,225.68,0.64882,0.085728,-0.7561,281.12
    13350 
    13351 > view matrix models
    13352 > #4,0.80327,0.41703,0.42525,196.22,0.37095,-0.90888,0.1906,224.44,0.46599,0.0046436,-0.88478,281.43
    13353 
    13354 > view matrix models
    13355 > #4,0.91741,0.39382,0.057205,197.59,0.35844,-0.88018,0.31113,224.08,0.17288,-0.26493,-0.94864,281.71
    13356 
    13357 > ui mousemode right "translate selected models"
    13358 
    13359 > view matrix models
    13360 > #4,0.91741,0.39382,0.057205,200.75,0.35844,-0.88018,0.31113,227.81,0.17288,-0.26493,-0.94864,296.62
    13361 
    13362 > view matrix models
    13363 > #4,0.91741,0.39382,0.057205,200.94,0.35844,-0.88018,0.31113,226.98,0.17288,-0.26493,-0.94864,295.47
    13364 
    13365 > fitmap #4 inMap #1
    13366 
    13367 Fit molecule fold_2024_07_24_00_25_model_0.cif (#4) to map
    13368 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 686 atoms 
    13369 average map value = 3.805, steps = 608 
    13370 shifted from previous position = 9.17 
    13371 rotated from previous position = 71.4 degrees 
    13372 atoms outside contour = 348, contour level = 4.3314 
    13373  
    13374 Position of fold_2024_07_24_00_25_model_0.cif (#4) relative to
    13375 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    13376 Matrix rotation and translation 
    13377 0.10424048 0.81369548 -0.57186849 194.19871519 
    13378 0.86556795 -0.35741522 -0.35077982 226.79853857 
    13379 -0.48982246 -0.45842559 -0.74156587 302.27728080 
    13380 Axis -0.74265105 -0.56603781 0.35786954 
    13381 Axis point 0.00000000 48.21339452 194.66209873 
    13382 Rotation angle (degrees) 175.84390269 
    13383 Shift along axis -164.42259605 
    13384  
    13385 
    13386 > open
    13387 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_25/fold_2024_07_24_00_25_model_1.cif
    13388 
    13389 Chain information for fold_2024_07_24_00_25_model_1.cif #10 
    13390 --- 
    13391 Chain | Description 
    13392 A | . 
    13393  
    13394 Drag select of 32 residues, 96 shapes 
    13395 
    13396 > view matrix models #10,1,0,0,173.69,0,1,0,319.11,0,0,1,33.346
    13397 
    13398 > view matrix models #10,1,0,0,172.48,0,1,0,257.84,0,0,1,307
    13399 
    13400 > ui mousemode right "rotate selected models"
    13401 
    13402 > view matrix models
    13403 > #10,0.63976,0.22184,0.73586,173.04,0.61947,0.41789,-0.66455,256.55,-0.45493,0.881,0.12993,307.03
    13404 
    13405 > open
    13406 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_25/fold_2024_07_24_00_25_model_2.cif
    13407 
    13408 Chain information for fold_2024_07_24_00_25_model_2.cif #12 
    13409 --- 
    13410 Chain | Description 
    13411 A | . 
    13412  
    13413 Drag select of 32 residues, 96 shapes 
    13414 
    13415 > view matrix models
    13416 > #12,0.69695,0.32707,0.63819,-0.2953,-0.33387,0.93559,-0.11487,0.33428,-0.63465,-0.13301,0.76126,0.66869
    13417 
    13418 > view matrix models
    13419 > #12,0.10781,0.86006,0.49867,-2.2096,-0.71839,0.41412,-0.55894,2.0636,-0.68724,-0.29798,0.66251,1.2261
    13420 
    13421 > view matrix models
    13422 > #12,0.64603,0.75453,-0.11547,-3.178,-0.50811,0.31219,-0.80272,1.926,-0.56963,0.57725,0.58507,-2.548
    13423 
    13424 > view matrix models
    13425 > #12,-0.55559,0.62681,-0.54628,-2.3602,-0.76886,-0.63741,0.050586,7.2393,-0.3165,0.44812,0.83607,-1.8432
    13426 
    13427 > view matrix models
    13428 > #12,0.21649,0.81791,0.53307,-2.4099,-0.95681,0.28626,-0.050645,3.4188,-0.19402,-0.49908,0.84456,1.9451
    13429 
    13430 > open
    13431 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_25/fold_2024_07_24_00_25_model_3.cif
    13432 
    13433 Chain information for fold_2024_07_24_00_25_model_3.cif #16 
    13434 --- 
    13435 Chain | Description 
    13436 A | . 
    13437  
    13438 
    13439 > open
    13440 > /Users/lingxiaobin/Desktop/fold_2024_07_24_00_25/fold_2024_07_24_00_25_model_4.cif
    13441 
    13442 Chain information for fold_2024_07_24_00_25_model_4.cif #18 
    13443 --- 
    13444 Chain | Description 
    13445 A | . 
    13446  
    13447 
    13448 > close #16
    13449 
    13450 > close #12
    13451 
    13452 Drag select of 32 residues, 96 shapes 
    13453 
    13454 > view matrix models
    13455 > #18,0.19153,-0.83287,0.51928,-2.624,0.15678,0.54824,0.82149,-2.0268,-0.96888,-0.07593,0.23558,0.66834
    13456 
    13457 > view matrix models
    13458 > #18,0.2973,-0.6457,-0.70334,0.3794,-0.4858,-0.73646,0.47077,-2.8571,-0.82196,0.20172,-0.53263,2.7578
    13459 
    13460 > view matrix models
    13461 > #18,0.54254,0.59936,-0.58857,1.3027,0.45992,-0.79825,-0.38894,0.00744,-0.70294,-0.059683,-0.70874,3.082
    13462 
    13463 > view matrix models
    13464 > #18,0.086637,0.2479,-0.9649,1.419,0.29578,-0.93127,-0.2127,-0.65793,-0.95132,-0.26698,-0.15401,1.4216
    13465 
    13466 > view matrix models
    13467 > #18,0.22266,-0.39847,-0.88974,0.90714,0.093364,-0.89975,0.42631,-2.2826,-0.97042,-0.17799,-0.16313,1.489
    13468 
    13469 > ui mousemode right "translate selected models"
    13470 
    13471 > view matrix models
    13472 > #18,0.22266,-0.39847,-0.88974,8.6984,0.093364,-0.89975,0.42631,208.04,-0.97042,-0.17799,-0.16313,282.85
    13473 
    13474 > view matrix models
    13475 > #18,0.22266,-0.39847,-0.88974,123.35,0.093364,-0.89975,0.42631,362.12,-0.97042,-0.17799,-0.16313,250.3
    13476 
    13477 > view matrix models
    13478 > #18,0.22266,-0.39847,-0.88974,177.87,0.093364,-0.89975,0.42631,219.42,-0.97042,-0.17799,-0.16313,318.76
    13479 
    13480 > view matrix models
    13481 > #18,0.22266,-0.39847,-0.88974,183.56,0.093364,-0.89975,0.42631,216.49,-0.97042,-0.17799,-0.16313,320.1
    13482 
    13483 > view matrix models
    13484 > #18,0.22266,-0.39847,-0.88974,187.2,0.093364,-0.89975,0.42631,224.53,-0.97042,-0.17799,-0.16313,295.89
    13485 
    13486 > close #4
    13487 
    13488 > ui mousemode right "rotate selected models"
    13489 
    13490 > view matrix models
    13491 > #18,-0.68063,0.063552,-0.72987,186.26,-0.33196,-0.91485,0.2299,224.53,-0.65311,0.39876,0.64377,294.83
    13492 
    13493 > view matrix models
    13494 > #18,0.0015937,0.16631,-0.98607,187.62,-0.10894,-0.98018,-0.16549,225.6,-0.99405,0.10769,0.016556,295.68
    13495 
    13496 > view matrix models
    13497 > #18,0.0055269,0.31732,-0.9483,187.65,-0.094621,-0.9439,-0.31639,225.98,-0.9955,0.091478,0.024808,295.64
    13498 
    13499 > view matrix models
    13500 > #18,-0.046118,-0.94733,-0.31693,185.23,-0.54821,-0.24122,0.8008,223.52,-0.83507,0.21068,-0.50821,297.1
    13501 
    13502 > view matrix models
    13503 > #18,-0.048035,-0.94144,-0.33374,185.27,-0.55013,-0.25395,0.79553,223.52,-0.8337,0.22181,-0.50571,297.1
    13504 
    13505 > fitmap #18 inMap #1
    13506 
    13507 Fit molecule fold_2024_07_24_00_25_model_4.cif (#18) to map
    13508 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 686 atoms 
    13509 average map value = 2.942, steps = 112 
    13510 shifted from previous position = 10.4 
    13511 rotated from previous position = 14.8 degrees 
    13512 atoms outside contour = 436, contour level = 4.3314 
    13513  
    13514 Position of fold_2024_07_24_00_25_model_4.cif (#18) relative to
    13515 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    13516 Matrix rotation and translation 
    13517 0.06590966 -0.98997621 -0.12491206 193.67599294 
    13518 -0.47614337 -0.14121599 0.86795479 230.16636108 
    13519 -0.87689418 0.00226944 -0.48067811 294.88224782 
    13520 Axis -0.68893944 0.59845086 0.40892422 
    13521 Axis point 0.00000000 261.72760072 165.06148681 
    13522 Rotation angle (degrees) 141.07711070 
    13523 Shift along axis 124.89671741 
    13524  
    13525 
    13526 > view matrix models
    13527 > #18,0.077019,-0.90267,-0.42339,194.43,-0.52123,-0.39846,0.75469,230.18,-0.84994,0.16256,-0.50118,295.08
    13528 
    13529 > ui mousemode right "translate selected models"
    13530 
    13531 > view matrix models
    13532 > #18,0.077019,-0.90267,-0.42339,197.97,-0.52123,-0.39846,0.75469,222.77,-0.84994,0.16256,-0.50118,295.77
    13533 
    13534 > view matrix models
    13535 > #18,0.077019,-0.90267,-0.42339,196.41,-0.52123,-0.39846,0.75469,223.91,-0.84994,0.16256,-0.50118,290.12
    13536 
    13537 > view matrix models
    13538 > #18,0.077019,-0.90267,-0.42339,196.07,-0.52123,-0.39846,0.75469,223.64,-0.84994,0.16256,-0.50118,289.21
    13539 
    13540 > fitmap #18 inMap #1
    13541 
    13542 Fit molecule fold_2024_07_24_00_25_model_4.cif (#18) to map
    13543 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 686 atoms 
    13544 average map value = 2.942, steps = 112 
    13545 shifted from previous position = 8.86 
    13546 rotated from previous position = 18.4 degrees 
    13547 atoms outside contour = 435, contour level = 4.3314 
    13548  
    13549 Position of fold_2024_07_24_00_25_model_4.cif (#18) relative to
    13550 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    13551 Matrix rotation and translation 
    13552 0.06568559 -0.99004984 -0.12444565 193.67458940 
    13553 -0.47608945 -0.14069951 0.86806824 230.18158493 
    13554 -0.87694027 0.00222769 -0.48059422 294.89293282 
    13555 Axis -0.68880760 0.59863680 0.40887415 
    13556 Axis point 0.00000000 261.81582582 165.05624875 
    13557 Rotation angle (degrees) 141.05995571 
    13558 Shift along axis 124.96473355 
    13559  
    13560 
    13561 > ui mousemode right "rotate selected models"
    13562 
    13563 > view matrix models
    13564 > #18,-0.38422,-0.038921,0.92242,191.56,-0.20263,0.9783,-0.043125,233.35,-0.90073,-0.20348,-0.38377,294.5
    13565 
    13566 > view matrix models
    13567 > #18,-0.35969,-0.64687,0.67244,191.7,-0.59326,0.7148,0.37028,231.82,-0.72018,-0.26575,-0.64087,295.22
    13568 
    13569 > ui mousemode right "translate selected models"
    13570 
    13571 > view matrix models
    13572 > #18,-0.35969,-0.64687,0.67244,197.56,-0.59326,0.7148,0.37028,224.21,-0.72018,-0.26575,-0.64087,293.52
    13573 
    13574 > view matrix models
    13575 > #18,-0.35969,-0.64687,0.67244,196.79,-0.59326,0.7148,0.37028,224.48,-0.72018,-0.26575,-0.64087,291.59
    13576 
    13577 > fitmap #18 inMap #1
    13578 
    13579 Fit molecule fold_2024_07_24_00_25_model_4.cif (#18) to map
    13580 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 686 atoms 
    13581 average map value = 3.921, steps = 288 
    13582 shifted from previous position = 10.3 
    13583 rotated from previous position = 60.2 degrees 
    13584 atoms outside contour = 335, contour level = 4.3314 
    13585  
    13586 Position of fold_2024_07_24_00_25_model_4.cif (#18) relative to
    13587 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    13588 Matrix rotation and translation 
    13589 0.32534744 -0.94046864 0.09832480 194.26005785 
    13590 -0.84207764 -0.24085563 0.48259071 227.55564541 
    13591 -0.43017936 -0.23980677 -0.87030938 300.58032129 
    13592 Axis -0.80224030 0.58691696 0.10926564 
    13593 Axis point 0.00000000 229.22619339 130.70399356 
    13594 Rotation angle (degrees) 153.24107126 
    13595 Shift along axis 10.55612124 
    13596  
    13597 
    13598 > hide #10 models
    13599 
    13600 > show #10 models
    13601 
    13602 > close #10
    13603 
    13604 > close #3
    13605 
    13606 > hide #9 models
    13607 
    13608 > show #9 models
    13609 
    13610 > hide #!13 models
    13611 
    13612 > show #!13 models
    13613 
    13614 > hide #18 models
    13615 
    13616 > show #18 models
    13617 
    13618 > close #18
    13619 
    13620 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_efa/fold_r_efa_model_0.cif
    13621 
    13622 Chain information for fold_r_efa_model_0.cif #3 
    13623 --- 
    13624 Chain | Description 
    13625 A | . 
    13626  
    13627 
    13628 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_efa/fold_r_efa_model_1.cif
    13629 
    13630 Chain information for fold_r_efa_model_1.cif #4 
    13631 --- 
    13632 Chain | Description 
    13633 A | . 
    13634  
    13635 
    13636 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_efa/fold_r_efa_model_2.cif
    13637 
    13638 Chain information for fold_r_efa_model_2.cif #10 
    13639 --- 
    13640 Chain | Description 
    13641 A | . 
    13642  
    13643 
    13644 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_efa/fold_r_efa_model_3.cif
    13645 
    13646 Chain information for fold_r_efa_model_3.cif #12 
    13647 --- 
    13648 Chain | Description 
    13649 A | . 
    13650  
    13651 
    13652 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_efa/fold_r_efa_model_4.cif
    13653 
    13654 Chain information for fold_r_efa_model_4.cif #16 
    13655 --- 
    13656 Chain | Description 
    13657 A | . 
    13658  
    13659 
    13660 > hide #!1 models
    13661 
    13662 > hide #9 models
    13663 
    13664 > hide #11 models
    13665 
    13666 > hide #!13 models
    13667 
    13668 > hide #16 models
    13669 
    13670 > show #16 models
    13671 
    13672 > hide #!5 models
    13673 
    13674 > hide #4 models
    13675 
    13676 > hide #10 models
    13677 
    13678 > hide #12 models
    13679 
    13680 > hide #16 models
    13681 
    13682 > show #4 models
    13683 
    13684 > hide #3 models
    13685 
    13686 > show #10 models
    13687 
    13688 > hide #4 models
    13689 
    13690 > show #12 models
    13691 
    13692 > hide #10 models
    13693 
    13694 > show #16 models
    13695 
    13696 > hide #12 models
    13697 
    13698 > show #3 models
    13699 
    13700 > hide #16 models
    13701 
    13702 > show #!2 models
    13703 
    13704 Drag select of 557 residues, 1132 shapes 
    13705 
    13706 > view matrix models #3,1,0,0,65.018,0,1,0,160.49,0,0,1,234.44
    13707 
    13708 > view matrix models #3,1,0,0,230.22,0,1,0,192.13,0,0,1,195.09
    13709 
    13710 > view matrix models #3,1,0,0,236.41,0,1,0,192.96,0,0,1,185.69
    13711 
    13712 > ui mousemode right "rotate selected models"
    13713 
    13714 > view matrix models
    13715 > #3,-0.62922,0.39093,-0.67175,247.93,-0.55279,-0.83266,0.03321,196.62,-0.54636,0.39223,0.74003,189.7
    13716 
    13717 > view matrix models
    13718 > #3,-0.73893,-0.40646,0.53737,249.43,0.2991,-0.91254,-0.27896,190.06,0.60376,-0.045403,0.79587,181.17
    13719 
    13720 > view matrix models
    13721 > #3,-0.99573,0.019019,-0.090294,250.94,0.0083144,-0.95606,-0.29306,192.18,-0.091899,-0.29256,0.95182,186.32
    13722 
    13723 > view matrix models
    13724 > #3,-0.68381,0.43888,-0.58291,248.4,-0.64461,-0.73767,0.2008,197.37,-0.34187,0.51306,0.78733,188.25
    13725 
    13726 > ui mousemode right "translate selected models"
    13727 
    13728 > view matrix models
    13729 > #3,-0.68381,0.43888,-0.58291,216.17,-0.64461,-0.73767,0.2008,202.13,-0.34187,0.51306,0.78733,222.24
    13730 
    13731 > view matrix models
    13732 > #3,-0.68381,0.43888,-0.58291,233.7,-0.64461,-0.73767,0.2008,212.84,-0.34187,0.51306,0.78733,232.9
    13733 
    13734 > ui mousemode right "rotate selected models"
    13735 
    13736 > view matrix models
    13737 > #3,-0.68701,0.29626,-0.66351,233.64,-0.6394,-0.68028,0.3583,212.91,-0.34522,0.67041,0.6568,232.87
    13738 
    13739 > fitmap #3 inMap #2
    13740 
    13741 Fit molecule fold_r_efa_model_0.cif (#3) to map
    13742 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 12448 atoms 
    13743 average map value = 1.143, steps = 224 
    13744 shifted from previous position = 7.03 
    13745 rotated from previous position = 22.2 degrees 
    13746 atoms outside contour = 11320, contour level = 5.0597 
    13747  
    13748 Position of fold_r_efa_model_0.cif (#3) relative to
    13749 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    13750 Matrix rotation and translation 
    13751 0.84092403 0.12518636 -0.52647427 208.31410004 
    13752 -0.54071805 0.15536987 -0.82673103 200.38070814 
    13753 -0.02169721 0.97989213 0.19834478 205.96625638 
    13754 Axis 0.90761986 -0.25359228 -0.33454020 
    13755 Axis point 0.00000000 -9.90081168 273.76511535 
    13756 Rotation angle (degrees) 84.41517318 
    13757 Shift along axis 69.35102232 
    13758  
    13759 
    13760 > view matrix models
    13761 > #3,-0.78233,0.016003,-0.62266,227.49,-0.16956,-0.96739,0.18817,213.1,-0.59934,0.25279,0.75953,231.4
    13762 
    13763 > view matrix models
    13764 > #3,-0.77615,0.014315,-0.63038,227.44,-0.16956,-0.96765,0.1868,213.1,-0.60732,0.25187,0.75348,231.46
    13765 
    13766 > view matrix models
    13767 > #3,-0.70248,-0.41757,-0.57633,226.83,0.4769,-0.87728,0.054332,208.28,-0.52829,-0.23669,0.81541,230.8
    13768 
    13769 > view matrix models
    13770 > #3,-0.85116,-0.12706,-0.50929,228.17,-0.24415,-0.76308,0.59842,213.97,-0.46467,0.63369,0.61848,230.41
    13771 
    13772 > view matrix models
    13773 > #3,-0.95945,-0.021005,-0.28108,229.04,-0.085086,-0.92912,0.35987,212.66,-0.26872,0.36919,0.88966,229.08
    13774 
    13775 > fitmap #3 inMap #2
    13776 
    13777 Fit molecule fold_r_efa_model_0.cif (#3) to map
    13778 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 12448 atoms 
    13779 average map value = 1.049, steps = 184 
    13780 shifted from previous position = 14.9 
    13781 rotated from previous position = 4.22 degrees 
    13782 atoms outside contour = 11372, contour level = 5.0597 
    13783  
    13784 Position of fold_r_efa_model_0.cif (#3) relative to
    13785 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    13786 Matrix rotation and translation 
    13787 0.52370262 0.19262791 -0.82983737 201.35997544 
    13788 -0.85119632 0.07870269 -0.51891301 192.94466134 
    13789 -0.03464670 0.97811062 0.20518097 200.36413152 
    13790 Axis 0.75200007 -0.39944823 -0.52434436 
    13791 Axis point 0.00000000 38.70756236 279.46309514 
    13792 Rotation angle (degrees) 95.52078611 
    13793 Shift along axis -30.70849016 
    13794  
    13795 
    13796 > fitmap #3 inMap #2
    13797 
    13798 Fit molecule fold_r_efa_model_0.cif (#3) to map
    13799 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 12448 atoms 
    13800 average map value = 1.049, steps = 48 
    13801 shifted from previous position = 0.0194 
    13802 rotated from previous position = 0.0136 degrees 
    13803 atoms outside contour = 11366, contour level = 5.0597 
    13804  
    13805 Position of fold_r_efa_model_0.cif (#3) relative to
    13806 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    13807 Matrix rotation and translation 
    13808 0.52376157 0.19244757 -0.82984200 201.34761426 
    13809 -0.85115898 0.07857644 -0.51899339 192.93495539 
    13810 -0.03467298 0.97815627 0.20495880 200.35299278 
    13811 Axis 0.75207396 -0.39944297 -0.52424238 
    13812 Axis point 0.00000000 38.71385244 279.40911869 
    13813 Rotation angle (degrees) 95.52911720 
    13814 Shift along axis -30.67174585 
    13815  
    13816 
    13817 > close #4
    13818 
    13819 > close #10
    13820 
    13821 > close #12
    13822 
    13823 > close #11,14#13,15
    13824 
    13825 > close #17,19
    13826 
    13827 > close #6-9
    13828 
    13829 > close #25-26
    13830 
    13831 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_efa/fold_r_efa_model_0.cif
    13832 
    13833 Chain information for fold_r_efa_model_0.cif #4 
    13834 --- 
    13835 Chain | Description 
    13836 A | . 
    13837  
    13838 
    13839 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_efa/fold_r_efa_model_0.cif
    13840 
    13841 Chain information for fold_r_efa_model_0.cif #6 
    13842 --- 
    13843 Chain | Description 
    13844 A | . 
    13845  
    13846 
    13847 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_efa/fold_r_efa_model_0.cif
    13848 
    13849 Chain information for fold_r_efa_model_0.cif #7 
    13850 --- 
    13851 Chain | Description 
    13852 A | . 
    13853  
    13854 
    13855 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_efa/fold_r_efa_model_0.cif
    13856 
    13857 Chain information for fold_r_efa_model_0.cif #8 
    13858 --- 
    13859 Chain | Description 
    13860 A | . 
    13861  
    13862 
    13863 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_efa/fold_r_efa_model_0.cif
    13864 
    13865 Chain information for fold_r_efa_model_0.cif #9 
    13866 --- 
    13867 Chain | Description 
    13868 A | . 
    13869  
    13870 
    13871 > hide #!2 models
    13872 
    13873 > select clear
    13874 
    13875 > ui tool show "Show Sequence Viewer"
    13876 
    13877 > sequence chain #3/A #16/A #4/A #6/A #7/A #8/A #9/A
    13878 
    13879 Alignment identifier is 1 
    13880 
    13881 > select #3/A:1
    13882 
    13883 23 atoms, 25 bonds, 1 residue, 1 model selected 
    13884 
    13885 > select add #3/A:2
    13886 
    13887 45 atoms, 49 bonds, 2 residues, 1 model selected 
    13888 
    13889 > select add #3/A:3
    13890 
    13891 65 atoms, 70 bonds, 3 residues, 1 model selected 
    13892 
    13893 > select add #3/A:4
    13894 
    13895 85 atoms, 91 bonds, 4 residues, 1 model selected 
    13896 
    13897 > select add #3/A:5
    13898 
    13899 108 atoms, 116 bonds, 5 residues, 1 model selected 
    13900 
    13901 > select add #3/A:6
    13902 
    13903 130 atoms, 140 bonds, 6 residues, 1 model selected 
    13904 
    13905 > select up
    13906 
    13907 12448 atoms, 13961 bonds, 580 residues, 1 model selected 
    13908 
    13909 > hide sel target a
    13910 
    13911 > select clear
    13912 
    13913 > select #3/A:1
    13914 
    13915 23 atoms, 25 bonds, 1 residue, 1 model selected 
    13916 
    13917 > select add #3/A:2
    13918 
    13919 45 atoms, 49 bonds, 2 residues, 1 model selected 
    13920 
    13921 > select add #3/A:3
    13922 
    13923 65 atoms, 70 bonds, 3 residues, 1 model selected 
    13924 
    13925 > select add #3/A:4
    13926 
    13927 85 atoms, 91 bonds, 4 residues, 1 model selected 
    13928 
    13929 > select #3/A:5
    13930 
    13931 23 atoms, 25 bonds, 1 residue, 1 model selected 
    13932 
    13933 > select #3/A:6
    13934 
    13935 22 atoms, 24 bonds, 1 residue, 1 model selected 
    13936 
    13937 > select clear
    13938 
    13939 > select #3/A:1
    13940 
    13941 23 atoms, 25 bonds, 1 residue, 1 model selected 
    13942 
    13943 > select add #3/A:2
    13944 
    13945 45 atoms, 49 bonds, 2 residues, 1 model selected 
    13946 
    13947 > select add #3/A:3
    13948 
    13949 65 atoms, 70 bonds, 3 residues, 1 model selected 
    13950 
    13951 > select add #3/A:4
    13952 
    13953 85 atoms, 91 bonds, 4 residues, 1 model selected 
    13954 
    13955 > select add #3/A:5
    13956 
    13957 108 atoms, 116 bonds, 5 residues, 1 model selected 
    13958 
    13959 > select add #3/A:6
    13960 
    13961 130 atoms, 140 bonds, 6 residues, 1 model selected 
    13962 
    13963 > select add #3/A:7
    13964 
    13965 152 atoms, 164 bonds, 7 residues, 1 model selected 
    13966 
    13967 > select add #3/A:8
    13968 
    13969 174 atoms, 188 bonds, 8 residues, 1 model selected 
    13970 
    13971 > select add #3/A:9
    13972 
    13973 196 atoms, 212 bonds, 9 residues, 1 model selected 
    13974 
    13975 > select add #3/A:10
    13976 
    13977 218 atoms, 236 bonds, 10 residues, 1 model selected 
    13978 
    13979 > select add #3/A:12
    13980 
    13981 238 atoms, 257 bonds, 11 residues, 1 model selected 
    13982 
    13983 > select add #3/A:11
    13984 
    13985 258 atoms, 278 bonds, 12 residues, 1 model selected 
    13986 
    13987 > select add #3/A:573
    13988 
    13989 278 atoms, 299 bonds, 13 residues, 1 model selected 
    13990 
    13991 > select add #3/A:574
    13992 
    13993 298 atoms, 320 bonds, 14 residues, 1 model selected 
    13994 
    13995 > select add #3/A:575
    13996 
    13997 318 atoms, 341 bonds, 15 residues, 1 model selected 
    13998 
    13999 > select add #3/A:576
    14000 
    14001 338 atoms, 362 bonds, 16 residues, 1 model selected 
    14002 
    14003 > select add #3/A:577
    14004 
    14005 358 atoms, 383 bonds, 17 residues, 1 model selected 
    14006 
    14007 > select add #3/A:578
    14008 
    14009 381 atoms, 408 bonds, 18 residues, 1 model selected 
    14010 
    14011 > select add #3/A:580
    14012 
    14013 404 atoms, 433 bonds, 19 residues, 1 model selected 
    14014 
    14015 > select add #3/A:579
    14016 
    14017 426 atoms, 457 bonds, 20 residues, 1 model selected 
    14018 
    14019 > select add #3/A:572
    14020 
    14021 448 atoms, 481 bonds, 21 residues, 1 model selected 
    14022 
    14023 > select add #3/A:571
    14024 
    14025 471 atoms, 506 bonds, 22 residues, 1 model selected 
    14026 
    14027 > select add #3/A:570
    14028 
    14029 491 atoms, 527 bonds, 23 residues, 1 model selected 
    14030 
    14031 > select add #3/A:569
    14032 
    14033 511 atoms, 548 bonds, 24 residues, 1 model selected 
    14034 
    14035 > select add #3/A:568
    14036 
    14037 534 atoms, 573 bonds, 25 residues, 1 model selected 
    14038 
    14039 > select add #3/A:567
    14040 
    14041 554 atoms, 594 bonds, 26 residues, 1 model selected 
    14042 
    14043 > select add #3/A:566
    14044 
    14045 574 atoms, 615 bonds, 27 residues, 1 model selected 
    14046 
    14047 > select add #3/A:13
    14048 
    14049 596 atoms, 639 bonds, 28 residues, 1 model selected 
    14050 
    14051 > select add #3/A:14
    14052 
    14053 618 atoms, 663 bonds, 29 residues, 1 model selected 
    14054 
    14055 > select add #3/A:15
    14056 
    14057 638 atoms, 684 bonds, 30 residues, 1 model selected 
    14058 
    14059 > select add #3/A:16
    14060 
    14061 660 atoms, 708 bonds, 31 residues, 1 model selected 
    14062 
    14063 > select add #3/A:17
    14064 
    14065 683 atoms, 733 bonds, 32 residues, 1 model selected 
    14066 
    14067 > select add #3/A:18
    14068 
    14069 705 atoms, 757 bonds, 33 residues, 1 model selected 
    14070 
    14071 > select add #3/A:19
    14072 
    14073 725 atoms, 778 bonds, 34 residues, 1 model selected 
    14074 
    14075 > select add #3/A:20
    14076 
    14077 745 atoms, 799 bonds, 35 residues, 1 model selected 
    14078 
    14079 > select add #3/A:21
    14080 
    14081 765 atoms, 820 bonds, 36 residues, 1 model selected 
    14082 
    14083 > select add #3/A:565
    14084 
    14085 785 atoms, 841 bonds, 37 residues, 1 model selected 
    14086 
    14087 > select add #3/A:564
    14088 
    14089 807 atoms, 865 bonds, 38 residues, 1 model selected 
    14090 
    14091 > select add #3/A:563
    14092 
    14093 829 atoms, 889 bonds, 39 residues, 1 model selected 
    14094 
    14095 > select add #3/A:561
    14096 
    14097 849 atoms, 910 bonds, 40 residues, 1 model selected 
    14098 
    14099 > select add #3/A:562
    14100 
    14101 871 atoms, 934 bonds, 41 residues, 1 model selected 
    14102 
    14103 > select add #3/A:560
    14104 
    14105 891 atoms, 955 bonds, 42 residues, 1 model selected 
    14106 
    14107 > select add #3/A:168
    14108 
    14109 911 atoms, 976 bonds, 43 residues, 1 model selected 
    14110 
    14111 > select subtract #3/A:168
    14112 
    14113 891 atoms, 955 bonds, 42 residues, 1 model selected 
    14114 
    14115 > select add #3/A:559
    14116 
    14117 911 atoms, 976 bonds, 43 residues, 1 model selected 
    14118 
    14119 > select add #3/A:558
    14120 
    14121 934 atoms, 1001 bonds, 44 residues, 1 model selected 
    14122 
    14123 > select add #3/A:557
    14124 
    14125 956 atoms, 1025 bonds, 45 residues, 1 model selected 
    14126 
    14127 > select add #3/A:556
    14128 
    14129 978 atoms, 1049 bonds, 46 residues, 1 model selected 
    14130 
    14131 > select add #3/A:555
    14132 
    14133 1000 atoms, 1073 bonds, 47 residues, 1 model selected 
    14134 
    14135 > select add #3/A:554
    14136 
    14137 1022 atoms, 1097 bonds, 48 residues, 1 model selected 
    14138 
    14139 > select add #3/A:553
    14140 
    14141 1045 atoms, 1122 bonds, 49 residues, 1 model selected 
    14142 
    14143 > select add #3/A:552
    14144 
    14145 1067 atoms, 1146 bonds, 50 residues, 1 model selected 
    14146 
    14147 > select add #3/A:551
    14148 
    14149 1089 atoms, 1170 bonds, 51 residues, 1 model selected 
    14150 
    14151 > select add #3/A:550
    14152 
    14153 1112 atoms, 1195 bonds, 52 residues, 1 model selected 
    14154 
    14155 > select add #3/A:549
    14156 
    14157 1135 atoms, 1220 bonds, 53 residues, 1 model selected 
    14158 
    14159 > select add #3/A:22
    14160 
    14161 1157 atoms, 1244 bonds, 54 residues, 1 model selected 
    14162 
    14163 > select add #3/A:23
    14164 
    14165 1179 atoms, 1268 bonds, 55 residues, 1 model selected 
    14166 
    14167 > select add #3/A:24
    14168 
    14169 1201 atoms, 1292 bonds, 56 residues, 1 model selected 
    14170 
    14171 > select add #3/A:548
    14172 
    14173 1223 atoms, 1316 bonds, 57 residues, 1 model selected 
    14174 
    14175 > select add #3/A:547
    14176 
    14177 1243 atoms, 1337 bonds, 58 residues, 1 model selected 
    14178 
    14179 > select add #3/A:546
    14180 
    14181 1266 atoms, 1362 bonds, 59 residues, 1 model selected 
    14182 
    14183 > select add #3/A:545
    14184 
    14185 1288 atoms, 1386 bonds, 60 residues, 1 model selected 
    14186 
    14187 > select add #3/A:544
    14188 
    14189 1310 atoms, 1410 bonds, 61 residues, 1 model selected 
    14190 
    14191 > select add #3/A:543
    14192 
    14193 1333 atoms, 1435 bonds, 62 residues, 1 model selected 
    14194 
    14195 > select add #3/A:25
    14196 
    14197 1353 atoms, 1456 bonds, 63 residues, 1 model selected 
    14198 
    14199 > select add #3/A:26
    14200 
    14201 1373 atoms, 1477 bonds, 64 residues, 1 model selected 
    14202 
    14203 > select add #3/A:27
    14204 
    14205 1393 atoms, 1498 bonds, 65 residues, 1 model selected 
    14206 
    14207 > select add #3/A:28
    14208 
    14209 1415 atoms, 1522 bonds, 66 residues, 1 model selected 
    14210 
    14211 > select add #3/A:29
    14212 
    14213 1438 atoms, 1547 bonds, 67 residues, 1 model selected 
    14214 
    14215 > select add #3/A:30
    14216 
    14217 1458 atoms, 1568 bonds, 68 residues, 1 model selected 
    14218 
    14219 > select add #3/A:31
    14220 
    14221 1481 atoms, 1593 bonds, 69 residues, 1 model selected 
    14222 
    14223 > select add #3/A:32
    14224 
    14225 1503 atoms, 1617 bonds, 70 residues, 1 model selected 
    14226 
    14227 > select add #3/A:33
    14228 
    14229 1525 atoms, 1641 bonds, 71 residues, 1 model selected 
    14230 
    14231 > select add #3/A:34
    14232 
    14233 1548 atoms, 1666 bonds, 72 residues, 1 model selected 
    14234 
    14235 > select add #3/A:35
    14236 
    14237 1570 atoms, 1690 bonds, 73 residues, 1 model selected 
    14238 
    14239 > select add #3/A:36
    14240 
    14241 1593 atoms, 1715 bonds, 74 residues, 1 model selected 
    14242 
    14243 > select add #3/A:37
    14244 
    14245 1613 atoms, 1736 bonds, 75 residues, 1 model selected 
    14246 
    14247 > select add #3/A:38
    14248 
    14249 1635 atoms, 1760 bonds, 76 residues, 1 model selected 
    14250 
    14251 > select add #3/A:39
    14252 
    14253 1655 atoms, 1781 bonds, 77 residues, 1 model selected 
    14254 
    14255 > select add #3/A:40
    14256 
    14257 1675 atoms, 1802 bonds, 78 residues, 1 model selected 
    14258 
    14259 > select add #3/A:41
    14260 
    14261 1695 atoms, 1823 bonds, 79 residues, 1 model selected 
    14262 
    14263 > select add #3/A:42
    14264 
    14265 1718 atoms, 1848 bonds, 80 residues, 1 model selected 
    14266 
    14267 > select add #3/A:43
    14268 
    14269 1740 atoms, 1872 bonds, 81 residues, 1 model selected 
    14270 
    14271 > select add #3/A:44
    14272 
    14273 1762 atoms, 1896 bonds, 82 residues, 1 model selected 
    14274 
    14275 > select add #3/A:45
    14276 
    14277 1782 atoms, 1917 bonds, 83 residues, 1 model selected 
    14278 
    14279 > select add #3/A:46
    14280 
    14281 1804 atoms, 1941 bonds, 84 residues, 1 model selected 
    14282 
    14283 > select add #3/A:47
    14284 
    14285 1826 atoms, 1965 bonds, 85 residues, 1 model selected 
    14286 
    14287 > select add #3/A:48
    14288 
    14289 1846 atoms, 1986 bonds, 86 residues, 1 model selected 
    14290 
    14291 > select add #3/A:49
    14292 
    14293 1869 atoms, 2011 bonds, 87 residues, 1 model selected 
    14294 
    14295 > select add #3/A:51
    14296 
    14297 1892 atoms, 2036 bonds, 88 residues, 1 model selected 
    14298 
    14299 > select add #3/A:52
    14300 
    14301 1912 atoms, 2057 bonds, 89 residues, 1 model selected 
    14302 
    14303 > select add #3/A:50
    14304 
    14305 1932 atoms, 2078 bonds, 90 residues, 1 model selected 
    14306 
    14307 > select add #3/A:53
    14308 
    14309 1952 atoms, 2099 bonds, 91 residues, 1 model selected 
    14310 
    14311 > select add #3/A:54
    14312 
    14313 1974 atoms, 2123 bonds, 92 residues, 1 model selected 
    14314 
    14315 > select add #3/A:55
    14316 
    14317 1997 atoms, 2148 bonds, 93 residues, 1 model selected 
    14318 
    14319 > select add #3/A:56
    14320 
    14321 2020 atoms, 2173 bonds, 94 residues, 1 model selected 
    14322 
    14323 > select add #3/A:57
    14324 
    14325 2043 atoms, 2198 bonds, 95 residues, 1 model selected 
    14326 
    14327 > select add #3/A:58
    14328 
    14329 2063 atoms, 2219 bonds, 96 residues, 1 model selected 
    14330 
    14331 > select add #3/A:59
    14332 
    14333 2085 atoms, 2243 bonds, 97 residues, 1 model selected 
    14334 
    14335 > select add #3/A:60
    14336 
    14337 2108 atoms, 2268 bonds, 98 residues, 1 model selected 
    14338 
    14339 > select ~sel & ##selected
    14340 
    14341 10340 atoms, 11597 bonds, 482 residues, 1 model selected 
    14342 
    14343 > delete atoms sel
    14344 
    14345 > delete bonds sel
    14346 
    14347 > show #!2 models
    14348 
    14349 > volume #2 level 2.228
    14350 
    14351 > select #3/A:1
    14352 
    14353 23 atoms, 25 bonds, 1 residue, 1 model selected 
    14354 
    14355 > view matrix models
    14356 > #3,-0.09423,0.57381,0.81355,293.53,-0.81519,-0.51356,0.26781,241.31,0.57148,-0.63796,0.51616,170.92
    14357 
    14358 > view matrix models
    14359 > #3,0.020321,0.38575,0.92238,287.64,-0.94044,-0.30576,0.14859,247.86,0.33935,-0.87046,0.35656,151.45
    14360 
    14361 > view matrix models
    14362 > #3,0.15044,0.78627,0.59929,298.65,-0.98163,0.046848,0.18495,268.26,0.11735,-0.61611,0.77887,179.38
    14363 
    14364 > fitmap #3 inMap #2
    14365 
    14366 Fit molecule fold_r_efa_model_0.cif (#3) to map
    14367 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 2108 atoms 
    14368 average map value = 2.819, steps = 164 
    14369 shifted from previous position = 2.06 
    14370 rotated from previous position = 17.1 degrees 
    14371 atoms outside contour = 1222, contour level = 2.2281 
    14372  
    14373 Position of fold_r_efa_model_0.cif (#3) relative to
    14374 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    14375 Matrix rotation and translation 
    14376 0.38812494 -0.01043207 -0.92154772 189.19124918 
    14377 0.37243799 0.91642365 0.14648430 271.14245758 
    14378 0.84299999 -0.40007359 0.35957218 134.45930536 
    14379 Axis -0.28971809 -0.93534720 0.20295084 
    14380 Axis point -91.97257033 0.00000000 177.97975063 
    14381 Rotation angle (degrees) 70.60611984 
    14382 Shift along axis -281.13583682 
    14383  
    14384 
    14385 > volume #2 style surface
    14386 
    14387 > select #3/A:23
    14388 
    14389 22 atoms, 24 bonds, 1 residue, 1 model selected 
    14390 
    14391 > select add #3/A:24
    14392 
    14393 44 atoms, 48 bonds, 2 residues, 1 model selected 
    14394 
    14395 > select add #3/A:25
    14396 
    14397 64 atoms, 69 bonds, 3 residues, 1 model selected 
    14398 
    14399 > select add #3/A:26
    14400 
    14401 84 atoms, 90 bonds, 4 residues, 1 model selected 
    14402 
    14403 > select add #3/A:27
    14404 
    14405 104 atoms, 111 bonds, 5 residues, 1 model selected 
    14406 
    14407 > select add #3/A:28
    14408 
    14409 126 atoms, 135 bonds, 6 residues, 1 model selected 
    14410 
    14411 > select add #3/A:30
    14412 
    14413 146 atoms, 156 bonds, 7 residues, 1 model selected 
    14414 
    14415 > select add #3/A:29
    14416 
    14417 169 atoms, 181 bonds, 8 residues, 1 model selected 
    14418 
    14419 > select add #3/A:31
    14420 
    14421 192 atoms, 206 bonds, 9 residues, 1 model selected 
    14422 
    14423 > select add #3/A:32
    14424 
    14425 214 atoms, 230 bonds, 10 residues, 1 model selected 
    14426 
    14427 > select add #3/A:33
    14428 
    14429 236 atoms, 254 bonds, 11 residues, 1 model selected 
    14430 
    14431 > select add #3/A:34
    14432 
    14433 259 atoms, 279 bonds, 12 residues, 1 model selected 
    14434 
    14435 > select add #3/A:35
    14436 
    14437 281 atoms, 303 bonds, 13 residues, 1 model selected 
    14438 
    14439 > select add #3/A:36
    14440 
    14441 304 atoms, 328 bonds, 14 residues, 1 model selected 
    14442 
    14443 > select add #3/A:37
    14444 
    14445 324 atoms, 349 bonds, 15 residues, 1 model selected 
    14446 
    14447 > select add #3/A:38
    14448 
    14449 346 atoms, 373 bonds, 16 residues, 1 model selected 
    14450 
    14451 > select add #3/A:39
    14452 
    14453 366 atoms, 394 bonds, 17 residues, 1 model selected 
    14454 
    14455 > select add #3/A:40
    14456 
    14457 386 atoms, 415 bonds, 18 residues, 1 model selected 
    14458 
    14459 > select add #3/A:41
    14460 
    14461 406 atoms, 436 bonds, 19 residues, 1 model selected 
    14462 
    14463 > select add #3/A:42
    14464 
    14465 429 atoms, 461 bonds, 20 residues, 1 model selected 
    14466 
    14467 > select add #3/A:43
    14468 
    14469 451 atoms, 485 bonds, 21 residues, 1 model selected 
    14470 
    14471 > select add #3/A:44
    14472 
    14473 473 atoms, 509 bonds, 22 residues, 1 model selected 
    14474 
    14475 > select add #3/A:45
    14476 
    14477 493 atoms, 530 bonds, 23 residues, 1 model selected 
    14478 
    14479 > select add #3/A:46
    14480 
    14481 515 atoms, 554 bonds, 24 residues, 1 model selected 
    14482 
    14483 > select add #3/A:47
    14484 
    14485 537 atoms, 578 bonds, 25 residues, 1 model selected 
    14486 
    14487 > select add #3/A:48
    14488 
    14489 557 atoms, 599 bonds, 26 residues, 1 model selected 
    14490 
    14491 > select add #3/A:50
    14492 
    14493 577 atoms, 620 bonds, 27 residues, 1 model selected 
    14494 
    14495 > select add #3/A:49
    14496 
    14497 600 atoms, 645 bonds, 28 residues, 1 model selected 
    14498 
    14499 > select add #3/A:51
    14500 
    14501 623 atoms, 670 bonds, 29 residues, 1 model selected 
    14502 
    14503 > select add #3/A:52
    14504 
    14505 643 atoms, 691 bonds, 30 residues, 1 model selected 
    14506 
    14507 > select add #3/A:53
    14508 
    14509 663 atoms, 712 bonds, 31 residues, 1 model selected 
    14510 
    14511 > select add #3/A:54
    14512 
    14513 685 atoms, 736 bonds, 32 residues, 1 model selected 
    14514 
    14515 > select add #3/A:55
    14516 
    14517 708 atoms, 761 bonds, 33 residues, 1 model selected 
    14518 
    14519 > select add #3/A:56
    14520 
    14521 731 atoms, 786 bonds, 34 residues, 1 model selected 
    14522 
    14523 > select add #3/A:57
    14524 
    14525 754 atoms, 811 bonds, 35 residues, 1 model selected 
    14526 
    14527 > select add #3/A:58
    14528 
    14529 774 atoms, 832 bonds, 36 residues, 1 model selected 
    14530 
    14531 > select add #3/A:59
    14532 
    14533 796 atoms, 856 bonds, 37 residues, 1 model selected 
    14534 
    14535 > select add #3/A:60
    14536 
    14537 819 atoms, 881 bonds, 38 residues, 1 model selected 
    14538 
    14539 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-loop2.pdb models #3
    14540 > selectedOnly true relModel #3
    14541 
    14542 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-loop2.pdb
    14543 
    14544 Chain information for R-loop2.pdb #10 
    14545 --- 
    14546 Chain | Description 
    14547 A | No description available 
    14548  
    14549 
    14550 > hide #10 models
    14551 
    14552 > show #10 models
    14553 
    14554 > delete atoms sel
    14555 
    14556 > delete bonds sel
    14557 
    14558 > select clear
    14559 
    14560 > select #4/A:43
    14561 
    14562 22 atoms, 24 bonds, 1 residue, 1 model selected 
    14563 
    14564 > view matrix models
    14565 > #4,1,-0.0029769,0.00051301,-0.00050014,0.0029699,0.99991,0.013134,0.00060934,-0.00055207,-0.013132,0.99991,-0.0023182
    14566 
    14567 > hide #7 models
    14568 
    14569 > hide #8 models
    14570 
    14571 > hide #9 models
    14572 
    14573 > hide #6 models
    14574 
    14575 > hide #4 models
    14576 
    14577 Drag select of 38 residues, 114 shapes 
    14578 
    14579 > ui mousemode right "translate selected models"
    14580 
    14581 > view matrix models #10,1,0,0,260.11,0,1,0,268.38,0,0,1,239.63
    14582 
    14583 > ui mousemode right "rotate selected models"
    14584 
    14585 > view matrix models
    14586 > #10,0.30271,0.51513,0.80188,290.25,-0.9355,0.32145,0.14664,212.21,-0.18223,-0.79455,0.57921,181.97
    14587 
    14588 > view matrix models
    14589 > #10,-0.54403,-0.36943,0.75336,220.36,-0.81064,-0.00029981,-0.58554,184.92,0.21654,-0.92926,-0.29931,169.05
    14590 
    14591 > view matrix models
    14592 > #10,-0.69654,0.58398,0.41689,271.96,-0.69333,-0.3982,-0.60061,162.28,-0.18474,-0.70739,0.68226,188.64
    14593 
    14594 > view matrix models
    14595 > #10,-0.66321,0.65194,0.36759,276.07,-0.74786,-0.55816,-0.35939,154.67,-0.029134,-0.51326,0.85774,205.62
    14596 
    14597 > ui mousemode right "translate selected models"
    14598 
    14599 > view matrix models
    14600 > #10,-0.66321,0.65194,0.36759,247.98,-0.74786,-0.55816,-0.35939,216.08,-0.029134,-0.51326,0.85774,194.46
    14601 
    14602 > view matrix models
    14603 > #10,-0.66321,0.65194,0.36759,251.55,-0.74786,-0.55816,-0.35939,221.71,-0.029134,-0.51326,0.85774,193.61
    14604 
    14605 > view matrix models
    14606 > #10,-0.66321,0.65194,0.36759,264.11,-0.74786,-0.55816,-0.35939,236.77,-0.029134,-0.51326,0.85774,172.57
    14607 
    14608 > view matrix models
    14609 > #10,-0.66321,0.65194,0.36759,278.65,-0.74786,-0.55816,-0.35939,221.09,-0.029134,-0.51326,0.85774,177.13
    14610 
    14611 > view matrix models
    14612 > #10,-0.66321,0.65194,0.36759,279.8,-0.74786,-0.55816,-0.35939,225.46,-0.029134,-0.51326,0.85774,178.54
    14613 
    14614 > fitmap #10 inMap #2
    14615 
    14616 Fit molecule R-loop2.pdb (#10) to map
    14617 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 819 atoms 
    14618 average map value = 2.879, steps = 116 
    14619 shifted from previous position = 8.11 
    14620 rotated from previous position = 21.4 degrees 
    14621 atoms outside contour = 482, contour level = 2.2281 
    14622  
    14623 Position of R-loop2.pdb (#10) relative to
    14624 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    14625 Matrix rotation and translation 
    14626 0.31392893 0.47144851 -0.82412677 212.87585752 
    14627 -0.52901542 0.80763924 0.26050249 264.17195273 
    14628 0.78841063 0.35419650 0.50294485 185.35811970 
    14629 Axis 0.04931275 -0.84870583 -0.52656116 
    14630 Axis point 96.66929260 0.00000000 196.45686807 
    14631 Rotation angle (degrees) 71.80472899 
    14632 Shift along axis -311.30917066 
    14633  
    14634 
    14635 > show #4 models
    14636 
    14637 > hide #!3 models
    14638 
    14639 > show #!3 models
    14640 
    14641 > select clear
    14642 
    14643 > select up
    14644 
    14645 12448 atoms, 13961 bonds, 580 residues, 1 model selected 
    14646 
    14647 > hide sel target a
    14648 
    14649 > select clear
    14650 
    14651 > select #4/A:60
    14652 
    14653 23 atoms, 25 bonds, 1 residue, 1 model selected 
    14654 
    14655 > select add #4/A:175
    14656 
    14657 43 atoms, 46 bonds, 2 residues, 1 model selected 
    14658 
    14659 > select add #4/A:174
    14660 
    14661 66 atoms, 71 bonds, 3 residues, 1 model selected 
    14662 
    14663 > select add #4/A:173
    14664 
    14665 86 atoms, 92 bonds, 4 residues, 1 model selected 
    14666 
    14667 > select add #4/A:172
    14668 
    14669 108 atoms, 116 bonds, 5 residues, 1 model selected 
    14670 
    14671 > select add #4/A:171
    14672 
    14673 128 atoms, 137 bonds, 6 residues, 1 model selected 
    14674 
    14675 > select add #4/A:169
    14676 
    14677 150 atoms, 161 bonds, 7 residues, 1 model selected 
    14678 
    14679 > select add #4/A:170
    14680 
    14681 170 atoms, 182 bonds, 8 residues, 1 model selected 
    14682 
    14683 > select add #4/A:61
    14684 
    14685 190 atoms, 203 bonds, 9 residues, 1 model selected 
    14686 
    14687 > select add #4/A:62
    14688 
    14689 212 atoms, 227 bonds, 10 residues, 1 model selected 
    14690 
    14691 > select add #4/A:140
    14692 
    14693 232 atoms, 248 bonds, 11 residues, 1 model selected 
    14694 
    14695 > select subtract #4/A:140
    14696 
    14697 212 atoms, 227 bonds, 10 residues, 1 model selected 
    14698 
    14699 > select add #4/A:63
    14700 
    14701 232 atoms, 248 bonds, 11 residues, 1 model selected 
    14702 
    14703 > select add #4/A:64
    14704 
    14705 255 atoms, 273 bonds, 12 residues, 1 model selected 
    14706 
    14707 > select add #4/A:65
    14708 
    14709 278 atoms, 298 bonds, 13 residues, 1 model selected 
    14710 
    14711 > select add #4/A:168
    14712 
    14713 298 atoms, 319 bonds, 14 residues, 1 model selected 
    14714 
    14715 > select add #4/A:167
    14716 
    14717 321 atoms, 344 bonds, 15 residues, 1 model selected 
    14718 
    14719 > select add #4/A:166
    14720 
    14721 343 atoms, 368 bonds, 16 residues, 1 model selected 
    14722 
    14723 > select add #4/A:66
    14724 
    14725 366 atoms, 393 bonds, 17 residues, 1 model selected 
    14726 
    14727 > select add #4/A:67
    14728 
    14729 388 atoms, 417 bonds, 18 residues, 1 model selected 
    14730 
    14731 > select add #4/A:68
    14732 
    14733 408 atoms, 438 bonds, 19 residues, 1 model selected 
    14734 
    14735 > select add #4/A:69
    14736 
    14737 430 atoms, 462 bonds, 20 residues, 1 model selected 
    14738 
    14739 > select add #4/A:70
    14740 
    14741 452 atoms, 486 bonds, 21 residues, 1 model selected 
    14742 
    14743 > select add #4/A:434
    14744 
    14745 472 atoms, 507 bonds, 22 residues, 1 model selected 
    14746 
    14747 > select subtract #4/A:434
    14748 
    14749 452 atoms, 486 bonds, 21 residues, 1 model selected 
    14750 
    14751 > select add #4/A:71
    14752 
    14753 475 atoms, 511 bonds, 22 residues, 1 model selected 
    14754 
    14755 > select add #4/A:165
    14756 
    14757 497 atoms, 535 bonds, 23 residues, 1 model selected 
    14758 
    14759 > select add #4/A:164
    14760 
    14761 519 atoms, 559 bonds, 24 residues, 1 model selected 
    14762 
    14763 > select add #4/A:163
    14764 
    14765 539 atoms, 580 bonds, 25 residues, 1 model selected 
    14766 
    14767 > select add #4/A:72
    14768 
    14769 559 atoms, 601 bonds, 26 residues, 1 model selected 
    14770 
    14771 > select add #4/A:73
    14772 
    14773 579 atoms, 622 bonds, 27 residues, 1 model selected 
    14774 
    14775 > select add #4/A:74
    14776 
    14777 602 atoms, 647 bonds, 28 residues, 1 model selected 
    14778 
    14779 > select add #4/A:75
    14780 
    14781 624 atoms, 671 bonds, 29 residues, 1 model selected 
    14782 
    14783 > select add #4/A:76
    14784 
    14785 644 atoms, 692 bonds, 30 residues, 1 model selected 
    14786 
    14787 > select add #4/A:77
    14788 
    14789 666 atoms, 716 bonds, 31 residues, 1 model selected 
    14790 
    14791 > select add #4/A:79
    14792 
    14793 686 atoms, 737 bonds, 32 residues, 1 model selected 
    14794 
    14795 > select add #4/A:78
    14796 
    14797 708 atoms, 761 bonds, 33 residues, 1 model selected 
    14798 
    14799 > select add #4/A:80
    14800 
    14801 728 atoms, 782 bonds, 34 residues, 1 model selected 
    14802 
    14803 > select add #4/A:81
    14804 
    14805 750 atoms, 806 bonds, 35 residues, 1 model selected 
    14806 
    14807 > select add #4/A:82
    14808 
    14809 772 atoms, 830 bonds, 36 residues, 1 model selected 
    14810 
    14811 > select add #4/A:83
    14812 
    14813 794 atoms, 854 bonds, 37 residues, 1 model selected 
    14814 
    14815 > select add #4/A:84
    14816 
    14817 816 atoms, 878 bonds, 38 residues, 1 model selected 
    14818 
    14819 > select add #4/A:85
    14820 
    14821 836 atoms, 899 bonds, 39 residues, 1 model selected 
    14822 
    14823 > select add #4/A:86
    14824 
    14825 859 atoms, 924 bonds, 40 residues, 1 model selected 
    14826 
    14827 > select add #4/A:87
    14828 
    14829 881 atoms, 948 bonds, 41 residues, 1 model selected 
    14830 
    14831 > select add #4/A:88
    14832 
    14833 903 atoms, 972 bonds, 42 residues, 1 model selected 
    14834 
    14835 > select add #4/A:89
    14836 
    14837 923 atoms, 993 bonds, 43 residues, 1 model selected 
    14838 
    14839 > select add #4/A:90
    14840 
    14841 943 atoms, 1014 bonds, 44 residues, 1 model selected 
    14842 
    14843 > select add #4/A:91
    14844 
    14845 966 atoms, 1039 bonds, 45 residues, 1 model selected 
    14846 
    14847 > select add #4/A:92
    14848 
    14849 989 atoms, 1064 bonds, 46 residues, 1 model selected 
    14850 
    14851 > select add #4/A:93
    14852 
    14853 1012 atoms, 1089 bonds, 47 residues, 1 model selected 
    14854 
    14855 > select add #4/A:94
    14856 
    14857 1034 atoms, 1113 bonds, 48 residues, 1 model selected 
    14858 
    14859 > select add #4/A:95
    14860 
    14861 1054 atoms, 1134 bonds, 49 residues, 1 model selected 
    14862 
    14863 > select add #4/A:96
    14864 
    14865 1076 atoms, 1158 bonds, 50 residues, 1 model selected 
    14866 
    14867 > select add #4/A:97
    14868 
    14869 1096 atoms, 1179 bonds, 51 residues, 1 model selected 
    14870 
    14871 > select add #4/A:98
    14872 
    14873 1116 atoms, 1200 bonds, 52 residues, 1 model selected 
    14874 
    14875 > select add #4/A:99
    14876 
    14877 1139 atoms, 1225 bonds, 53 residues, 1 model selected 
    14878 Drag select of 6 residues 
    14879 
    14880 > select add #4/A:175
    14881 
    14882 155 atoms, 21 bonds, 7 residues, 1 model selected 
    14883 
    14884 > select add #4/A:174
    14885 
    14886 178 atoms, 46 bonds, 8 residues, 1 model selected 
    14887 
    14888 > select add #4/A:173
    14889 
    14890 198 atoms, 67 bonds, 9 residues, 1 model selected 
    14891 
    14892 > select add #4/A:172
    14893 
    14894 220 atoms, 91 bonds, 10 residues, 1 model selected 
    14895 
    14896 > select add #4/A:171
    14897 
    14898 240 atoms, 112 bonds, 11 residues, 1 model selected 
    14899 
    14900 > select add #4/A:170
    14901 
    14902 260 atoms, 133 bonds, 12 residues, 1 model selected 
    14903 
    14904 > select add #4/A:169
    14905 
    14906 282 atoms, 157 bonds, 13 residues, 1 model selected 
    14907 
    14908 > color #4 #ec3acaff
    14909 
    14910 > select add #4/A:60
    14911 
    14912 305 atoms, 182 bonds, 14 residues, 1 model selected 
    14913 
    14914 > select add #4/A:61
    14915 
    14916 325 atoms, 203 bonds, 15 residues, 1 model selected 
    14917 
    14918 > select add #4/A:62
    14919 
    14920 347 atoms, 227 bonds, 16 residues, 1 model selected 
    14921 
    14922 > select add #4/A:63
    14923 
    14924 367 atoms, 248 bonds, 17 residues, 1 model selected 
    14925 
    14926 > select add #4/A:64
    14927 
    14928 390 atoms, 273 bonds, 18 residues, 1 model selected 
    14929 
    14930 > select add #4/A:167
    14931 
    14932 413 atoms, 298 bonds, 19 residues, 1 model selected 
    14933 
    14934 > select add #4/A:168
    14935 
    14936 433 atoms, 319 bonds, 20 residues, 1 model selected 
    14937 
    14938 > select add #4/A:166
    14939 
    14940 455 atoms, 343 bonds, 21 residues, 1 model selected 
    14941 
    14942 > select add #4/A:165
    14943 
    14944 477 atoms, 367 bonds, 22 residues, 1 model selected 
    14945 
    14946 > select add #4/A:164
    14947 
    14948 499 atoms, 391 bonds, 23 residues, 1 model selected 
    14949 
    14950 > select add #4/A:65
    14951 
    14952 522 atoms, 416 bonds, 24 residues, 1 model selected 
    14953 
    14954 > select add #4/A:66
    14955 
    14956 545 atoms, 441 bonds, 25 residues, 1 model selected 
    14957 
    14958 > select add #4/A:67
    14959 
    14960 567 atoms, 465 bonds, 26 residues, 1 model selected 
    14961 
    14962 > select add #4/A:68
    14963 
    14964 587 atoms, 486 bonds, 27 residues, 1 model selected 
    14965 
    14966 > select add #4/A:69
    14967 
    14968 609 atoms, 510 bonds, 28 residues, 1 model selected 
    14969 
    14970 > select add #4/A:70
    14971 
    14972 631 atoms, 534 bonds, 29 residues, 1 model selected 
    14973 
    14974 > select add #4/A:71
    14975 
    14976 654 atoms, 559 bonds, 30 residues, 1 model selected 
    14977 
    14978 > select add #4/A:72
    14979 
    14980 674 atoms, 580 bonds, 31 residues, 1 model selected 
    14981 
    14982 > select add #4/A:73
    14983 
    14984 694 atoms, 601 bonds, 32 residues, 1 model selected 
    14985 
    14986 > select add #4/A:74
    14987 
    14988 717 atoms, 626 bonds, 33 residues, 1 model selected 
    14989 
    14990 > select add #4/A:75
    14991 
    14992 739 atoms, 650 bonds, 34 residues, 1 model selected 
    14993 
    14994 > select add #4/A:163
    14995 
    14996 759 atoms, 671 bonds, 35 residues, 1 model selected 
    14997 
    14998 > select add #4/A:162
    14999 
    15000 782 atoms, 696 bonds, 36 residues, 1 model selected 
    15001 
    15002 > select add #4/A:161
    15003 
    15004 802 atoms, 717 bonds, 37 residues, 1 model selected 
    15005 
    15006 > select add #4/A:160
    15007 
    15008 822 atoms, 738 bonds, 38 residues, 1 model selected 
    15009 
    15010 > select add #4/A:159
    15011 
    15012 844 atoms, 762 bonds, 39 residues, 1 model selected 
    15013 
    15014 > select add #4/A:158
    15015 
    15016 866 atoms, 786 bonds, 40 residues, 1 model selected 
    15017 
    15018 > select add #4/A:157
    15019 
    15020 886 atoms, 807 bonds, 41 residues, 1 model selected 
    15021 
    15022 > select add #4/A:76
    15023 
    15024 906 atoms, 828 bonds, 42 residues, 1 model selected 
    15025 
    15026 > select add #4/A:77
    15027 
    15028 928 atoms, 852 bonds, 43 residues, 1 model selected 
    15029 
    15030 > select add #4/A:78
    15031 
    15032 950 atoms, 876 bonds, 44 residues, 1 model selected 
    15033 
    15034 > select add #4/A:79
    15035 
    15036 970 atoms, 897 bonds, 45 residues, 1 model selected 
    15037 
    15038 > select subtract #4/A:216
    15039 
    15040 948 atoms, 897 bonds, 44 residues, 1 model selected 
    15041 
    15042 > select subtract #4/A:215
    15043 
    15044 925 atoms, 897 bonds, 43 residues, 1 model selected 
    15045 
    15046 > select add #4/A:88
    15047 
    15048 947 atoms, 921 bonds, 44 residues, 1 model selected 
    15049 
    15050 > select add #4/A:89
    15051 
    15052 967 atoms, 942 bonds, 45 residues, 1 model selected 
    15053 
    15054 > select add #4/A:90
    15055 
    15056 987 atoms, 963 bonds, 46 residues, 1 model selected 
    15057 
    15058 > select add #4/A:91
    15059 
    15060 1010 atoms, 988 bonds, 47 residues, 1 model selected 
    15061 
    15062 > select add #4/A:92
    15063 
    15064 1033 atoms, 1013 bonds, 48 residues, 1 model selected 
    15065 
    15066 > select add #4/A:93
    15067 
    15068 1056 atoms, 1038 bonds, 49 residues, 1 model selected 
    15069 
    15070 > select add #4/A:94
    15071 
    15072 1078 atoms, 1062 bonds, 50 residues, 1 model selected 
    15073 
    15074 > select add #4/A:95
    15075 
    15076 1098 atoms, 1083 bonds, 51 residues, 1 model selected 
    15077 
    15078 > select add #4/A:96
    15079 
    15080 1120 atoms, 1107 bonds, 52 residues, 1 model selected 
    15081 
    15082 > select add #4/A:97
    15083 
    15084 1140 atoms, 1128 bonds, 53 residues, 1 model selected 
    15085 
    15086 > select add #4/A:98
    15087 
    15088 1160 atoms, 1149 bonds, 54 residues, 1 model selected 
    15089 
    15090 > select add #4/A:101
    15091 
    15092 1180 atoms, 1170 bonds, 55 residues, 1 model selected 
    15093 
    15094 > select add #4/A:102
    15095 
    15096 1200 atoms, 1191 bonds, 56 residues, 1 model selected 
    15097 
    15098 > select add #4/A:103
    15099 
    15100 1223 atoms, 1216 bonds, 57 residues, 1 model selected 
    15101 
    15102 > select add #4/A:104
    15103 
    15104 1245 atoms, 1240 bonds, 58 residues, 1 model selected 
    15105 
    15106 > select add #4/A:105
    15107 
    15108 1265 atoms, 1261 bonds, 59 residues, 1 model selected 
    15109 
    15110 > select add #4/A:106
    15111 
    15112 1285 atoms, 1282 bonds, 60 residues, 1 model selected 
    15113 
    15114 > select add #4/A:107
    15115 
    15116 1305 atoms, 1303 bonds, 61 residues, 1 model selected 
    15117 
    15118 > select add #4/A:108
    15119 
    15120 1325 atoms, 1324 bonds, 62 residues, 1 model selected 
    15121 
    15122 > select add #4/A:85
    15123 
    15124 1345 atoms, 1345 bonds, 63 residues, 1 model selected 
    15125 
    15126 > select add #4/A:84
    15127 
    15128 1367 atoms, 1369 bonds, 64 residues, 1 model selected 
    15129 
    15130 > select add #4/A:83
    15131 
    15132 1389 atoms, 1393 bonds, 65 residues, 1 model selected 
    15133 
    15134 > select add #4/A:81
    15135 
    15136 1411 atoms, 1417 bonds, 66 residues, 1 model selected 
    15137 
    15138 > select add #4/A:82
    15139 
    15140 1433 atoms, 1441 bonds, 67 residues, 1 model selected 
    15141 
    15142 > select add #4/A:80
    15143 
    15144 1453 atoms, 1462 bonds, 68 residues, 1 model selected 
    15145 
    15146 > select add #4/A:109
    15147 
    15148 1475 atoms, 1486 bonds, 69 residues, 1 model selected 
    15149 
    15150 > select add #4/A:110
    15151 
    15152 1498 atoms, 1511 bonds, 70 residues, 1 model selected 
    15153 
    15154 > select add #4/A:111
    15155 
    15156 1518 atoms, 1532 bonds, 71 residues, 1 model selected 
    15157 
    15158 > select add #4/A:112
    15159 
    15160 1541 atoms, 1557 bonds, 72 residues, 1 model selected 
    15161 
    15162 > select add #4/A:113
    15163 
    15164 1564 atoms, 1582 bonds, 73 residues, 1 model selected 
    15165 
    15166 > select add #4/A:114
    15167 
    15168 1584 atoms, 1603 bonds, 74 residues, 1 model selected 
    15169 
    15170 > select add #4/A:115
    15171 
    15172 1607 atoms, 1628 bonds, 75 residues, 1 model selected 
    15173 
    15174 > select add #4/A:116
    15175 
    15176 1630 atoms, 1653 bonds, 76 residues, 1 model selected 
    15177 
    15178 > select add #4/A:117
    15179 
    15180 1652 atoms, 1677 bonds, 77 residues, 1 model selected 
    15181 
    15182 > select add #4/A:118
    15183 
    15184 1672 atoms, 1698 bonds, 78 residues, 1 model selected 
    15185 
    15186 > select add #4/A:119
    15187 
    15188 1692 atoms, 1719 bonds, 79 residues, 1 model selected 
    15189 
    15190 > select add #4/A:120
    15191 
    15192 1712 atoms, 1740 bonds, 80 residues, 1 model selected 
    15193 
    15194 > select add #4/A:121
    15195 
    15196 1732 atoms, 1761 bonds, 81 residues, 1 model selected 
    15197 
    15198 > select add #4/A:122
    15199 
    15200 1754 atoms, 1785 bonds, 82 residues, 1 model selected 
    15201 
    15202 > select add #4/A:123
    15203 
    15204 1774 atoms, 1806 bonds, 83 residues, 1 model selected 
    15205 
    15206 > select add #4/A:124
    15207 
    15208 1796 atoms, 1830 bonds, 84 residues, 1 model selected 
    15209 
    15210 > select add #4/A:125
    15211 
    15212 1819 atoms, 1855 bonds, 85 residues, 1 model selected 
    15213 
    15214 > select add #4/A:126
    15215 
    15216 1839 atoms, 1876 bonds, 86 residues, 1 model selected 
    15217 
    15218 > select add #4/A:127
    15219 
    15220 1861 atoms, 1900 bonds, 87 residues, 1 model selected 
    15221 
    15222 > select add #4/A:128
    15223 
    15224 1883 atoms, 1924 bonds, 88 residues, 1 model selected 
    15225 
    15226 > select add #4/A:129
    15227 
    15228 1903 atoms, 1945 bonds, 89 residues, 1 model selected 
    15229 
    15230 > select add #4/A:130
    15231 
    15232 1926 atoms, 1970 bonds, 90 residues, 1 model selected 
    15233 
    15234 > select add #4/A:131
    15235 
    15236 1946 atoms, 1991 bonds, 91 residues, 1 model selected 
    15237 
    15238 > select add #4/A:132
    15239 
    15240 1968 atoms, 2015 bonds, 92 residues, 1 model selected 
    15241 
    15242 > select add #4/A:133
    15243 
    15244 1990 atoms, 2039 bonds, 93 residues, 1 model selected 
    15245 
    15246 > select add #4/A:134
    15247 
    15248 2012 atoms, 2063 bonds, 94 residues, 1 model selected 
    15249 
    15250 > select add #4/A:135
    15251 
    15252 2034 atoms, 2087 bonds, 95 residues, 1 model selected 
    15253 
    15254 > select add #4/A:136
    15255 
    15256 2056 atoms, 2111 bonds, 96 residues, 1 model selected 
    15257 
    15258 > select add #4/A:137
    15259 
    15260 2079 atoms, 2136 bonds, 97 residues, 1 model selected 
    15261 
    15262 > select add #4/A:138
    15263 
    15264 2102 atoms, 2161 bonds, 98 residues, 1 model selected 
    15265 
    15266 > select add #4/A:139
    15267 
    15268 2124 atoms, 2185 bonds, 99 residues, 1 model selected 
    15269 
    15270 > select add #4/A:140
    15271 
    15272 2144 atoms, 2206 bonds, 100 residues, 1 model selected 
    15273 
    15274 > select add #4/A:141
    15275 
    15276 2164 atoms, 2227 bonds, 101 residues, 1 model selected 
    15277 
    15278 > select add #4/A:142
    15279 
    15280 2186 atoms, 2251 bonds, 102 residues, 1 model selected 
    15281 
    15282 > select add #4/A:143
    15283 
    15284 2208 atoms, 2275 bonds, 103 residues, 1 model selected 
    15285 
    15286 > select add #4/A:144
    15287 
    15288 2228 atoms, 2296 bonds, 104 residues, 1 model selected 
    15289 
    15290 > select add #4/A:156
    15291 
    15292 2248 atoms, 2317 bonds, 105 residues, 1 model selected 
    15293 
    15294 > select add #4/A:155
    15295 
    15296 2270 atoms, 2341 bonds, 106 residues, 1 model selected 
    15297 
    15298 > select add #4/A:154
    15299 
    15300 2290 atoms, 2362 bonds, 107 residues, 1 model selected 
    15301 
    15302 > select add #4/A:153
    15303 
    15304 2310 atoms, 2383 bonds, 108 residues, 1 model selected 
    15305 
    15306 > select add #4/A:145
    15307 
    15308 2332 atoms, 2407 bonds, 109 residues, 1 model selected 
    15309 
    15310 > select add #4/A:146
    15311 
    15312 2355 atoms, 2432 bonds, 110 residues, 1 model selected 
    15313 
    15314 > select add #4/A:152
    15315 
    15316 2378 atoms, 2457 bonds, 111 residues, 1 model selected 
    15317 
    15318 > select add #4/A:151
    15319 
    15320 2400 atoms, 2481 bonds, 112 residues, 1 model selected 
    15321 
    15322 > select add #4/A:150
    15323 
    15324 2422 atoms, 2505 bonds, 113 residues, 1 model selected 
    15325 
    15326 > select add #4/A:149
    15327 
    15328 2444 atoms, 2529 bonds, 114 residues, 1 model selected 
    15329 
    15330 > select add #4/A:148
    15331 
    15332 2466 atoms, 2553 bonds, 115 residues, 1 model selected 
    15333 
    15334 > select add #4/A:147
    15335 
    15336 2486 atoms, 2574 bonds, 116 residues, 1 model selected 
    15337 
    15338 > select ~sel & ##selected
    15339 
    15340 9962 atoms, 11174 bonds, 464 residues, 1 model selected 
    15341 
    15342 > delete atoms sel
    15343 
    15344 > delete bonds sel
    15345 
    15346 Drag select of 64 residues 
    15347 
    15348 > view matrix models
    15349 > #4,1,-0.0029769,0.00051301,22.527,0.0029699,0.99991,0.013134,12.645,-0.00055207,-0.013132,0.99991,127.1
    15350 
    15351 > view matrix models
    15352 > #4,1,-0.0029769,0.00051301,39.626,0.0029699,0.99991,0.013134,43.979,-0.00055207,-0.013132,0.99991,289.28
    15353 
    15354 > view matrix models
    15355 > #4,1,-0.0029769,0.00051301,245.91,0.0029699,0.99991,0.013134,189.72,-0.00055207,-0.013132,0.99991,239.65
    15356 
    15357 > view matrix models
    15358 > #4,1,-0.0029769,0.00051301,263.99,0.0029699,0.99991,0.013134,226.5,-0.00055207,-0.013132,0.99991,241.24
    15359 
    15360 > ui mousemode right "rotate selected models"
    15361 
    15362 > view matrix models
    15363 > #4,0.83124,-0.11286,0.54434,276.32,-0.48111,-0.63663,0.60269,226.58,0.27852,-0.76287,-0.58349,195.98
    15364 
    15365 > view matrix models
    15366 > #4,0.72328,-0.35124,-0.59456,241.83,-0.61456,-0.72007,-0.32221,198.7,-0.31495,0.59844,-0.73667,192.94
    15367 
    15368 > view matrix models
    15369 > #4,0.90778,-0.41455,0.063925,262.01,-0.27254,-0.69879,-0.66138,193.64,0.31884,0.58296,-0.74733,200.4
    15370 
    15371 > ui mousemode right "translate selected models"
    15372 
    15373 > view matrix models
    15374 > #4,0.90778,-0.41455,0.063925,229.4,-0.27254,-0.69879,-0.66138,206.54,0.31884,0.58296,-0.74733,215.69
    15375 
    15376 > view matrix models
    15377 > #4,0.90778,-0.41455,0.063925,220.87,-0.27254,-0.69879,-0.66138,213.08,0.31884,0.58296,-0.74733,209.85
    15378 
    15379 > ui mousemode right "rotate selected models"
    15380 
    15381 > view matrix models
    15382 > #4,0.63387,-0.61638,0.46721,227.41,-0.015471,-0.61405,-0.78912,213.25,0.77328,0.49297,-0.39877,224.6
    15383 
    15384 > view matrix models
    15385 > #4,0.6497,-0.61703,0.44403,226.96,-0.0059338,-0.5882,-0.80869,212.98,0.76016,0.52278,-0.38582,224.99
    15386 
    15387 > fitmap #4 inMap #2
    15388 
    15389 Fit molecule fold_r_efa_model_0.cif (#4) to map
    15390 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 2486 atoms 
    15391 average map value = 3.215, steps = 112 
    15392 shifted from previous position = 3.7 
    15393 rotated from previous position = 13.8 degrees 
    15394 atoms outside contour = 1275, contour level = 2.2281 
    15395  
    15396 Position of fold_r_efa_model_0.cif (#4) relative to
    15397 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    15398 Matrix rotation and translation 
    15399 -0.69776293 -0.17111572 0.69559063 215.43515823 
    15400 0.60135688 -0.66755966 0.43901482 197.58637483 
    15401 0.38922591 0.72462647 0.56869999 201.98460624 
    15402 Axis 0.32503180 0.34864921 0.87908934 
    15403 Axis point 58.89163084 73.55827418 0.00000000 
    15404 Rotation angle (degrees) 153.93697465 
    15405 Shift along axis 316.47412339 
    15406  
    15407 
    15408 > select clear
    15409 
    15410 > select #4/A:73
    15411 
    15412 20 atoms, 21 bonds, 1 residue, 1 model selected 
    15413 
    15414 > select add #4/A:72
    15415 
    15416 40 atoms, 42 bonds, 2 residues, 1 model selected 
    15417 
    15418 > select add #4/A:71
    15419 
    15420 63 atoms, 67 bonds, 3 residues, 1 model selected 
    15421 
    15422 > select add #4/A:70
    15423 
    15424 85 atoms, 91 bonds, 4 residues, 1 model selected 
    15425 
    15426 > select add #4/A:69
    15427 
    15428 107 atoms, 115 bonds, 5 residues, 1 model selected 
    15429 
    15430 > select add #4/A:68
    15431 
    15432 127 atoms, 136 bonds, 6 residues, 1 model selected 
    15433 
    15434 > select add #4/A:67
    15435 
    15436 149 atoms, 160 bonds, 7 residues, 1 model selected 
    15437 
    15438 > select add #4/A:66
    15439 
    15440 172 atoms, 185 bonds, 8 residues, 1 model selected 
    15441 
    15442 > select add #4/A:65
    15443 
    15444 195 atoms, 210 bonds, 9 residues, 1 model selected 
    15445 
    15446 > select add #4/A:64
    15447 
    15448 218 atoms, 235 bonds, 10 residues, 1 model selected 
    15449 
    15450 > select add #4/A:63
    15451 
    15452 238 atoms, 256 bonds, 11 residues, 1 model selected 
    15453 
    15454 > select add #4/A:62
    15455 
    15456 260 atoms, 280 bonds, 12 residues, 1 model selected 
    15457 
    15458 > select add #4/A:61
    15459 
    15460 280 atoms, 301 bonds, 13 residues, 1 model selected 
    15461 
    15462 > select add #4/A:60
    15463 
    15464 303 atoms, 326 bonds, 14 residues, 1 model selected 
    15465 
    15466 > select add #4/A:165
    15467 
    15468 325 atoms, 350 bonds, 15 residues, 1 model selected 
    15469 
    15470 > select add #4/A:166
    15471 
    15472 347 atoms, 374 bonds, 16 residues, 1 model selected 
    15473 
    15474 > select add #4/A:167
    15475 
    15476 370 atoms, 399 bonds, 17 residues, 1 model selected 
    15477 
    15478 > select add #4/A:168
    15479 
    15480 390 atoms, 420 bonds, 18 residues, 1 model selected 
    15481 
    15482 > select add #4/A:169
    15483 
    15484 412 atoms, 444 bonds, 19 residues, 1 model selected 
    15485 
    15486 > select add #4/A:170
    15487 
    15488 432 atoms, 465 bonds, 20 residues, 1 model selected 
    15489 
    15490 > select add #4/A:171
    15491 
    15492 452 atoms, 486 bonds, 21 residues, 1 model selected 
    15493 
    15494 > select add #4/A:172
    15495 
    15496 474 atoms, 510 bonds, 22 residues, 1 model selected 
    15497 
    15498 > select add #4/A:173
    15499 
    15500 494 atoms, 531 bonds, 23 residues, 1 model selected 
    15501 
    15502 > select add #4/A:174
    15503 
    15504 517 atoms, 556 bonds, 24 residues, 1 model selected 
    15505 
    15506 > select add #4/A:175
    15507 
    15508 537 atoms, 577 bonds, 25 residues, 1 model selected 
    15509 
    15510 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R4-1.pdb models #4
    15511 > selectedOnly true relModel #4
    15512 
    15513 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R4-1.pdb
    15514 
    15515 Chain information for R4-1.pdb #11 
    15516 --- 
    15517 Chain | Description 
    15518 A | No description available 
    15519  
    15520 
    15521 > delete atoms sel
    15522 
    15523 > delete bonds sel
    15524 
    15525 Drag select of 25 residues, 1 pseudobonds, 75 shapes 
    15526 
    15527 > ui mousemode right "translate selected models"
    15528 
    15529 > view matrix models #11,1,0,0,270.78,0,1,0,359.22,0,0,1,204.09
    15530 
    15531 > ui mousemode right "rotate selected models"
    15532 
    15533 > ui mousemode right "translate selected models"
    15534 
    15535 > view matrix models #11,1,0,0,222.67,0,1,0,343.42,0,0,1,202.23
    15536 
    15537 > ui mousemode right "rotate selected models"
    15538 
    15539 > view matrix models
    15540 > #11,-0.20215,0.89821,-0.39034,229.08,-0.7443,-0.39994,-0.53484,268.66,-0.63651,0.18241,0.74939,193.82
    15541 
    15542 > view matrix models
    15543 > #11,0.34426,0.58651,0.73314,258.03,-0.48503,0.7797,-0.396,318.01,-0.80389,-0.21926,0.55289,171.61
    15544 
    15545 > view matrix models
    15546 > #11,-0.74749,-0.13217,0.65099,217.17,0.66048,-0.043327,0.74959,336.3,-0.070866,0.99028,0.11968,210.38
    15547 
    15548 > view matrix models
    15549 > #11,0.069951,-0.78264,0.61854,202.46,0.88268,-0.24031,-0.40388,297.21,0.46473,0.57422,0.67401,218.38
    15550 
    15551 > view matrix models
    15552 > #11,0.23328,-0.84628,0.47895,197.89,0.73389,-0.16991,-0.65767,290.37,0.63795,0.50492,0.58144,215.14
    15553 
    15554 > view matrix models
    15555 > #11,0.23612,-0.78358,0.57468,203.04,0.58097,-0.36022,-0.72987,279.62,0.77892,0.50621,0.37018,210.48
    15556 
    15557 > ui mousemode right "translate selected models"
    15558 
    15559 > view matrix models
    15560 > #11,0.23612,-0.78358,0.57468,213.66,0.58097,-0.36022,-0.72987,248.7,0.77892,0.50621,0.37018,257.36
    15561 
    15562 > view matrix models
    15563 > #11,0.23612,-0.78358,0.57468,218.32,0.58097,-0.36022,-0.72987,241.4,0.77892,0.50621,0.37018,253.82
    15564 
    15565 > view matrix models
    15566 > #11,0.23612,-0.78358,0.57468,212.44,0.58097,-0.36022,-0.72987,242.99,0.77892,0.50621,0.37018,255.47
    15567 
    15568 > fitmap #11 inMap #2
    15569 
    15570 Fit molecule R4-1.pdb (#11) to map
    15571 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 537 atoms 
    15572 average map value = 5.219, steps = 128 
    15573 shifted from previous position = 12.3 
    15574 rotated from previous position = 26.3 degrees 
    15575 atoms outside contour = 145, contour level = 2.2281 
    15576  
    15577 Position of R4-1.pdb (#11) relative to
    15578 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    15579 Matrix rotation and translation 
    15580 -0.93449672 0.32657079 0.14165943 206.24932565 
    15581 -0.12459596 -0.67285215 0.72920904 185.95633779 
    15582 0.33345423 0.66379326 0.66946754 206.09696691 
    15583 Axis -0.13226354 -0.38778809 -0.91220982 
    15584 Axis point 93.31271687 37.58954309 0.00000000 
    15585 Rotation angle (degrees) 165.68259869 
    15586 Shift along axis -287.39459639 
    15587  
    15588 
    15589 > view matrix models
    15590 > #11,0.11475,-0.71758,0.68696,216.31,0.23654,-0.6519,-0.72047,219.21,0.96482,0.24517,0.094928,235.54
    15591 
    15592 > view matrix models
    15593 > #11,0.11475,-0.71758,0.68696,216.69,0.23654,-0.6519,-0.72047,220.6,0.96482,0.24517,0.094928,234.54
    15594 
    15595 > view matrix models
    15596 > #11,0.11475,-0.71758,0.68696,217.45,0.23654,-0.6519,-0.72047,221.37,0.96482,0.24517,0.094928,233.68
    15597 
    15598 > view matrix models
    15599 > #11,0.11475,-0.71758,0.68696,217.75,0.23654,-0.6519,-0.72047,222.07,0.96482,0.24517,0.094928,236.35
    15600 
    15601 > view matrix models
    15602 > #11,0.11475,-0.71758,0.68696,218.07,0.23654,-0.6519,-0.72047,222.65,0.96482,0.24517,0.094928,237.71
    15603 
    15604 > view matrix models
    15605 > #11,0.11475,-0.71758,0.68696,216.67,0.23654,-0.6519,-0.72047,221.05,0.96482,0.24517,0.094928,239.52
    15606 
    15607 > view matrix models
    15608 > #11,0.11475,-0.71758,0.68696,218.36,0.23654,-0.6519,-0.72047,221.43,0.96482,0.24517,0.094928,237.42
    15609 
    15610 > fitmap #11 inMap #2
    15611 
    15612 Fit molecule R4-1.pdb (#11) to map
    15613 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 537 atoms 
    15614 average map value = 5.999, steps = 148 
    15615 shifted from previous position = 5.31 
    15616 rotated from previous position = 29.5 degrees 
    15617 atoms outside contour = 101, contour level = 2.2281 
    15618  
    15619 Position of R4-1.pdb (#11) relative to
    15620 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    15621 Matrix rotation and translation 
    15622 -0.68570177 0.45758134 0.56606749 228.64509932 
    15623 0.02347268 -0.76338525 0.64551685 183.34736074 
    15624 0.72750403 0.45591917 0.51271395 196.21949788 
    15625 Axis -0.37884747 -0.32257686 -0.86742076 
    15626 Axis point 77.43998217 47.20491052 0.00000000 
    15627 Rotation angle (degrees) 165.50890228 
    15628 Shift along axis -315.97009746 
    15629  
    15630 
    15631 > volume #2 level 4.199
    15632 
    15633 > hide #!3 models
    15634 
    15635 > hide #4 models
    15636 
    15637 > hide #10 models
    15638 
    15639 > hide #!11 models
    15640 
    15641 > show #!5 models
    15642 
    15643 > open /Users/lingxiaobin/Desktop/Wangzefeng_Cte/PIE_C_3dot75_emready.mrc
    15644 
    15645 Opened PIE_C_3dot75_emready.mrc as #12, grid size 256,256,256, pixel 1.2,
    15646 shown at level 0.275, step 1, values float32 
    15647 
    15648 > hide #!1 models
    15649 
    15650 > hide #!5 models
    15651 
    15652 > volume #12 level 3.238
    15653 
    15654 > volume #12 level 0.33
    15655 
    15656 > volume #12 level 0.8238
    15657 
    15658 > volume #12 level 4.061
    15659 
    15660 > volume #12 level 0.9335
    15661 
    15662 > volume #12 level 3.841
    15663 
    15664 > volume #12 level 1.043
    15665 
    15666 > volume #12 level 0.714
    15667 
    15668 > volume #12 level 0.4946
    15669 
    15670 > volume #12 level 2.854
    15671 
    15672 > volume #12 level 4.664
    15673 
    15674 > volume #12 level 1.811
    15675 
    15676 > volume #12 level 0.4946
    15677 
    15678 > volume #12 level 2.415
    15679 
    15680 > volume #12 level 3.951
    15681 
    15682 > show #!12 models
    15683 
    15684 > close #12
    15685 
    15686 > show #16 models
    15687 
    15688 > show #!2 models
    15689 
    15690 > hide #16 models
    15691 
    15692 > show #!3 models
    15693 
    15694 > show #4 models
    15695 
    15696 > show #6 models
    15697 
    15698 > hide #6 models
    15699 
    15700 > show #6 models
    15701 
    15702 > hide #6 models
    15703 
    15704 > show #!5 models
    15705 
    15706 > hide #!5 models
    15707 
    15708 > show #7 models
    15709 
    15710 > hide #7 models
    15711 
    15712 > show #!11 models
    15713 
    15714 > hide #!11 models
    15715 
    15716 > combine #3 #4
    15717 
    15718 Remapping chain ID 'A' in fold_r_efa_model_0.cif #4 to 'B' 
    15719 
    15720 > hide #!3 models
    15721 
    15722 > hide #4 models
    15723 
    15724 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-3-4.pdb models #12 relModel
    15725 > #2
    15726 
    15727 > open
    15728 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/RealSpaceRefine_11/R-3-4_real_space_refined_011.pdb
    15729 
    15730 Chain information for R-3-4_real_space_refined_011.pdb #13 
    15731 --- 
    15732 Chain | Description 
    15733 A | No description available 
    15734 B | No description available 
    15735  
    15736 
    15737 > hide #!12 models
    15738 
    15739 > select #13/B:161
    15740 
    15741 20 atoms, 21 bonds, 1 residue, 1 model selected 
    15742 
    15743 > ui mousemode right "rotate selected models"
    15744 
    15745 > view matrix models
    15746 > #13,-0.45542,0.51435,0.72666,110.9,-0.65849,0.3547,-0.66377,389.25,-0.59915,-0.78079,0.17716,429.23
    15747 
    15748 > view matrix models
    15749 > #13,-0.92997,0.24533,0.27381,349.41,-0.16242,0.39399,-0.90465,309.45,-0.32981,-0.88577,-0.32655,474.49
    15750 
    15751 > view matrix models
    15752 > #13,-0.5206,0.55746,0.64669,131.59,-0.39237,0.51649,-0.7611,314.12,-0.7583,-0.64998,-0.050153,480.2
    15753 
    15754 > ui mousemode right "translate selected models"
    15755 
    15756 > view matrix models
    15757 > #13,-0.5206,0.55746,0.64669,111.57,-0.39237,0.51649,-0.7611,327.45,-0.7583,-0.64998,-0.050153,472.27
    15758 
    15759 > view matrix models
    15760 > #13,-0.5206,0.55746,0.64669,143.86,-0.39237,0.51649,-0.7611,325.29,-0.7583,-0.64998,-0.050153,505.51
    15761 
    15762 > view matrix models
    15763 > #13,-0.5206,0.55746,0.64669,146.03,-0.39237,0.51649,-0.7611,326.96,-0.7583,-0.64998,-0.050153,509.91
    15764 
    15765 > fitmap #13 inMap #2
    15766 
    15767 Fit molecule R-3-4_real_space_refined_011.pdb (#13) to map
    15768 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 3238 atoms 
    15769 average map value = 2.5, steps = 196 
    15770 shifted from previous position = 4.41 
    15771 rotated from previous position = 31.1 degrees 
    15772 atoms outside contour = 2384, contour level = 4.1986 
    15773  
    15774 Position of R-3-4_real_space_refined_011.pdb (#13) relative to
    15775 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    15776 Matrix rotation and translation 
    15777 0.96950016 -0.20384917 -0.13606967 69.33246269 
    15778 0.22627539 0.53113340 0.81651501 -62.72682417 
    15779 -0.09417476 -0.82240065 0.56105997 280.15473278 
    15780 Axis -0.96694860 -0.02471770 0.25377044 
    15781 Axis point 0.00000000 228.10348775 207.63659916 
    15782 Rotation angle (degrees) 57.93731454 
    15783 Shift along axis 5.60452375 
    15784  
    15785 
    15786 > hide #!2 models
    15787 
    15788 Drag select of 93 residues, 183 shapes 
    15789 
    15790 > select subtract #13/A:548
    15791 
    15792 1969 atoms, 92 residues, 1 model selected 
    15793 
    15794 > select subtract #13/A:547
    15795 
    15796 1949 atoms, 91 residues, 1 model selected 
    15797 
    15798 > delete atoms sel
    15799 
    15800 > delete bonds sel
    15801 
    15802 > show #!2 models
    15803 
    15804 > show #!3 models
    15805 
    15806 > hide #!3 models
    15807 
    15808 > show #4 models
    15809 
    15810 > select #4/A:90
    15811 
    15812 20 atoms, 21 bonds, 1 residue, 1 model selected 
    15813 
    15814 > fitmap #4 inMap #2
    15815 
    15816 Fit molecule fold_r_efa_model_0.cif (#4) to map
    15817 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1949 atoms 
    15818 average map value = 3.614, steps = 172 
    15819 shifted from previous position = 1.66 
    15820 rotated from previous position = 7.92 degrees 
    15821 atoms outside contour = 1160, contour level = 4.1986 
    15822  
    15823 Position of fold_r_efa_model_0.cif (#4) relative to
    15824 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    15825 Matrix rotation and translation 
    15826 -0.63396826 -0.27036787 0.72455880 218.05882018 
    15827 0.65404760 -0.68739276 0.31577355 195.26763343 
    15828 0.41268145 0.67408635 0.61261865 204.30543347 
    15829 Axis 0.34475481 0.30007640 0.88943705 
    15830 Axis point 53.58634244 80.38726561 0.00000000 
    15831 Rotation angle (degrees) 148.69033522 
    15832 Shift along axis 315.48885966 
    15833  
    15834 
    15835 > select up
    15836 
    15837 1949 atoms, 2185 bonds, 91 residues, 1 model selected 
    15838 
    15839 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-3.pdb models #4
    15840 > selectedOnly true relModel #2
    15841 
    15842 > open
    15843 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/RealSpaceRefine_12/R-3_real_space_refined_012.pdb
    15844 
    15845 Chain information for R-3_real_space_refined_012.pdb #14 
    15846 --- 
    15847 Chain | Description 
    15848 A | No description available 
    15849  
    15850 
    15851 > select subtract #4
    15852 
    15853 Nothing selected 
    15854 
    15855 > hide #4 models
    15856 
    15857 > select clear
    15858 
    15859 > select #14/A:108
    15860 
    15861 20 atoms, 21 bonds, 1 residue, 1 model selected 
    15862 
    15863 > view matrix models #14,1,0,0,-23.288,0,1,0,45.891,0,0,1,4.1028
    15864 
    15865 > view matrix models #14,1,0,0,6.2042,0,1,0,46.424,0,0,1,23.548
    15866 
    15867 > view matrix models #14,1,0,0,-3.2075,0,1,0,57.224,0,0,1,33.282
    15868 
    15869 > view matrix models #14,1,0,0,-3.4578,0,1,0,62.668,0,0,1,34.749
    15870 
    15871 > ui mousemode right "rotate selected models"
    15872 
    15873 > view matrix models
    15874 > #14,-0.34995,0.93457,0.06413,117.4,-0.015603,0.062634,-0.99791,405.04,-0.93664,-0.35023,-0.007337,477.57
    15875 
    15876 > view matrix models
    15877 > #14,-0.59771,0.71836,-0.35595,283.29,0.51716,0.0062123,-0.85587,273.99,-0.61261,-0.69564,-0.37522,532.53
    15878 
    15879 > view matrix models
    15880 > #14,-0.91451,0.25039,-0.31776,425.02,0.10706,-0.60767,-0.78694,455.61,-0.39013,-0.75368,0.52892,332.51
    15881 
    15882 > view matrix models
    15883 > #14,-0.55071,0.64137,-0.53419,318.12,0.21444,-0.50978,-0.83315,423.89,-0.80668,-0.57338,0.14321,460.77
    15884 
    15885 > ui mousemode right "translate selected models"
    15886 
    15887 > view matrix models
    15888 > #14,-0.55071,0.64137,-0.53419,305.28,0.21444,-0.50978,-0.83315,433.22,-0.80668,-0.57338,0.14321,467.84
    15889 
    15890 > view matrix models
    15891 > #14,-0.55071,0.64137,-0.53419,309.46,0.21444,-0.50978,-0.83315,433.35,-0.80668,-0.57338,0.14321,469.85
    15892 
    15893 > fitmap #14 inMap #2
    15894 
    15895 Fit molecule R-3_real_space_refined_012.pdb (#14) to map
    15896 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1949 atoms 
    15897 average map value = 5.341, steps = 212 
    15898 shifted from previous position = 6.01 
    15899 rotated from previous position = 51.5 degrees 
    15900 atoms outside contour = 776, contour level = 4.1986 
    15901  
    15902 Position of R-3_real_space_refined_012.pdb (#14) relative to
    15903 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    15904 Matrix rotation and translation 
    15905 0.99999057 0.00136313 0.00412220 -1.00478763 
    15906 -0.00136129 0.99999897 -0.00045123 0.43435028 
    15907 -0.00412281 0.00044562 0.99999140 0.79798120 
    15908 Axis 0.10273580 0.94448211 -0.31208796 
    15909 Axis point 197.42870392 0.00000000 245.64675523 
    15910 Rotation angle (degrees) 0.25008693 
    15911 Shift along axis 0.05796810 
    15912  
    15913 
    15914 > close #14
    15915 
    15916 > open
    15917 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/RealSpaceRefine_13/R-3_real_space_refined_013.pdb
    15918 
    15919 Chain information for R-3_real_space_refined_013.pdb #14 
    15920 --- 
    15921 Chain | Description 
    15922 A | No description available 
    15923  
    15924 
    15925 > select #14/A:110
    15926 
    15927 23 atoms, 25 bonds, 1 residue, 1 model selected 
    15928 
    15929 > view matrix models #14,1,0,0,-21.922,0,1,0,29.113,0,0,1,1.4382
    15930 
    15931 > ui mousemode right "rotate selected models"
    15932 
    15933 > view matrix models
    15934 > #14,0.25235,0.88037,0.40158,-82.534,-0.31276,0.46695,-0.82713,335.96,-0.9157,0.083131,0.39318,293.87
    15935 
    15936 > view matrix models
    15937 > #14,-0.045143,0.99342,0.10523,15.485,0.23036,0.11285,-0.96654,303.76,-0.97206,-0.019393,-0.23394,435.56
    15938 
    15939 > ui mousemode right "translate selected models"
    15940 
    15941 > view matrix models
    15942 > #14,-0.045143,0.99342,0.10523,0.72319,0.23036,0.11285,-0.96654,338.22,-0.97206,-0.019393,-0.23394,439.55
    15943 
    15944 > view matrix models
    15945 > #14,-0.045143,0.99342,0.10523,17.201,0.23036,0.11285,-0.96654,327.35,-0.97206,-0.019393,-0.23394,456.37
    15946 
    15947 > fitmap #14 inMap #2
    15948 
    15949 Fit molecule R-3_real_space_refined_013.pdb (#14) to map
    15950 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1949 atoms 
    15951 average map value = 2.87, steps = 164 
    15952 shifted from previous position = 17.1 
    15953 rotated from previous position = 25.2 degrees 
    15954 atoms outside contour = 1332, contour level = 4.1986 
    15955  
    15956 Position of R-3_real_space_refined_013.pdb (#14) relative to
    15957 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    15958 Matrix rotation and translation 
    15959 0.89735394 -0.08425762 0.43319344 -38.04997430 
    15960 0.09595783 0.99537196 -0.00517197 -19.75290368 
    15961 -0.43075283 0.04620940 0.90128613 102.70040802 
    15962 Axis 0.05812131 0.97727426 0.20385519 
    15963 Axis point 207.32573338 0.00000000 136.88448686 
    15964 Rotation angle (degrees) 26.23272970 
    15965 Shift along axis -0.57950790 
    15966  
    15967 
    15968 > close #14
    15969 
    15970 > show #4 models
    15971 
    15972 > hide #!2 models
    15973 
    15974 > select #4/A:123
    15975 
    15976 20 atoms, 21 bonds, 1 residue, 1 model selected 
    15977 
    15978 > select add #4/A:122
    15979 
    15980 42 atoms, 45 bonds, 2 residues, 1 model selected 
    15981 
    15982 > select add #4/A:121
    15983 
    15984 62 atoms, 66 bonds, 3 residues, 1 model selected 
    15985 
    15986 > select add #4/A:120
    15987 
    15988 82 atoms, 87 bonds, 4 residues, 1 model selected 
    15989 
    15990 > select add #4/A:124
    15991 
    15992 104 atoms, 111 bonds, 5 residues, 1 model selected 
    15993 
    15994 > select add #4/A:125
    15995 
    15996 127 atoms, 136 bonds, 6 residues, 1 model selected 
    15997 
    15998 > select add #4/A:126
    15999 
    16000 147 atoms, 157 bonds, 7 residues, 1 model selected 
    16001 
    16002 > select add #4/A:127
    16003 
    16004 169 atoms, 181 bonds, 8 residues, 1 model selected 
    16005 
    16006 > select add #4/A:128
    16007 
    16008 191 atoms, 205 bonds, 9 residues, 1 model selected 
    16009 
    16010 > select add #4/A:129
    16011 
    16012 211 atoms, 226 bonds, 10 residues, 1 model selected 
    16013 
    16014 > select add #4/A:130
    16015 
    16016 234 atoms, 251 bonds, 11 residues, 1 model selected 
    16017 
    16018 > select add #4/A:131
    16019 
    16020 254 atoms, 272 bonds, 12 residues, 1 model selected 
    16021 
    16022 > select add #4/A:132
    16023 
    16024 276 atoms, 296 bonds, 13 residues, 1 model selected 
    16025 
    16026 > select add #4/A:133
    16027 
    16028 298 atoms, 320 bonds, 14 residues, 1 model selected 
    16029 
    16030 > select add #4/A:135
    16031 
    16032 320 atoms, 344 bonds, 15 residues, 1 model selected 
    16033 
    16034 > select add #4/A:136
    16035 
    16036 342 atoms, 368 bonds, 16 residues, 1 model selected 
    16037 
    16038 > select add #4/A:116
    16039 
    16040 365 atoms, 393 bonds, 17 residues, 1 model selected 
    16041 
    16042 > select add #4/A:117
    16043 
    16044 387 atoms, 417 bonds, 18 residues, 1 model selected 
    16045 
    16046 > select add #4/A:118
    16047 
    16048 407 atoms, 438 bonds, 19 residues, 1 model selected 
    16049 
    16050 > select add #4/A:119
    16051 
    16052 427 atoms, 459 bonds, 20 residues, 1 model selected 
    16053 
    16054 > select add #4/A:134
    16055 
    16056 449 atoms, 483 bonds, 21 residues, 1 model selected 
    16057 
    16058 > select add #4/A:115
    16059 
    16060 472 atoms, 508 bonds, 22 residues, 1 model selected 
    16061 
    16062 > select add #4/A:114
    16063 
    16064 492 atoms, 529 bonds, 23 residues, 1 model selected 
    16065 
    16066 > select add #4/A:113
    16067 
    16068 515 atoms, 554 bonds, 24 residues, 1 model selected 
    16069 
    16070 > select add #4/A:137
    16071 
    16072 538 atoms, 579 bonds, 25 residues, 1 model selected 
    16073 
    16074 > select add #4/A:138
    16075 
    16076 561 atoms, 604 bonds, 26 residues, 1 model selected 
    16077 
    16078 > select add #4/A:139
    16079 
    16080 583 atoms, 628 bonds, 27 residues, 1 model selected 
    16081 
    16082 > select add #4/A:140
    16083 
    16084 603 atoms, 649 bonds, 28 residues, 1 model selected 
    16085 
    16086 > select add #4/A:142
    16087 
    16088 625 atoms, 673 bonds, 29 residues, 1 model selected 
    16089 
    16090 > select add #4/A:143
    16091 
    16092 647 atoms, 697 bonds, 30 residues, 1 model selected 
    16093 
    16094 > select add #4/A:141
    16095 
    16096 667 atoms, 718 bonds, 31 residues, 1 model selected 
    16097 
    16098 > select add #4/A:159
    16099 
    16100 689 atoms, 742 bonds, 32 residues, 1 model selected 
    16101 
    16102 > select add #4/A:158
    16103 
    16104 711 atoms, 766 bonds, 33 residues, 1 model selected 
    16105 
    16106 > select add #4/A:157
    16107 
    16108 731 atoms, 787 bonds, 34 residues, 1 model selected 
    16109 
    16110 > select add #4/A:156
    16111 
    16112 751 atoms, 808 bonds, 35 residues, 1 model selected 
    16113 
    16114 > select add #4/A:155
    16115 
    16116 773 atoms, 832 bonds, 36 residues, 1 model selected 
    16117 
    16118 > select add #4/A:154
    16119 
    16120 793 atoms, 853 bonds, 37 residues, 1 model selected 
    16121 
    16122 > select add #4/A:153
    16123 
    16124 813 atoms, 874 bonds, 38 residues, 1 model selected 
    16125 
    16126 > select add #4/A:151
    16127 
    16128 835 atoms, 898 bonds, 39 residues, 1 model selected 
    16129 
    16130 > select add #4/A:152
    16131 
    16132 858 atoms, 923 bonds, 40 residues, 1 model selected 
    16133 
    16134 > select add #4/A:150
    16135 
    16136 880 atoms, 947 bonds, 41 residues, 1 model selected 
    16137 
    16138 > select add #4/A:149
    16139 
    16140 902 atoms, 971 bonds, 42 residues, 1 model selected 
    16141 
    16142 > select add #4/A:148
    16143 
    16144 924 atoms, 995 bonds, 43 residues, 1 model selected 
    16145 
    16146 > select add #4/A:147
    16147 
    16148 944 atoms, 1016 bonds, 44 residues, 1 model selected 
    16149 
    16150 > select add #4/A:146
    16151 
    16152 967 atoms, 1041 bonds, 45 residues, 1 model selected 
    16153 
    16154 > select add #4/A:145
    16155 
    16156 989 atoms, 1065 bonds, 46 residues, 1 model selected 
    16157 
    16158 > select add #4/A:144
    16159 
    16160 1009 atoms, 1086 bonds, 47 residues, 1 model selected 
    16161 
    16162 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R5.pdb models #4 relModel #4
    16163 
    16164 > hide #!13 models
    16165 
    16166 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R5.pdb models #4 selectedOnly
    16167 > true relModel #4
    16168 
    16169 > open
    16170 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/RealSpaceRefine_15/R5_real_space_refined_015.pdb
    16171 
    16172 Chain information for R5_real_space_refined_015.pdb #14 
    16173 --- 
    16174 Chain | Description 
    16175 A | No description available 
    16176  
    16177 
    16178 > show #!2 models
    16179 
    16180 > delete atoms sel
    16181 
    16182 > delete bonds sel
    16183 
    16184 > select #14/A:114
    16185 
    16186 20 atoms, 21 bonds, 1 residue, 1 model selected 
    16187 
    16188 > view matrix models #14,1,0,0,-22.765,0,1,0,14.023,0,0,1,3.9193
    16189 
    16190 > view matrix models #14,1,0,0,-0.91925,0,1,0,18.967,0,0,1,38.006
    16191 
    16192 > view matrix models #14,1,0,0,4.4032,0,1,0,35.818,0,0,1,35.26
    16193 
    16194 > fitmap #14 inMap #2
    16195 
    16196 Fit molecule R5_real_space_refined_015.pdb (#14) to map
    16197 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1009 atoms 
    16198 average map value = 2.657, steps = 124 
    16199 shifted from previous position = 8.87 
    16200 rotated from previous position = 19.5 degrees 
    16201 atoms outside contour = 738, contour level = 4.1986 
    16202  
    16203 Position of R5_real_space_refined_015.pdb (#14) relative to
    16204 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    16205 Matrix rotation and translation 
    16206 -0.52336932 -0.58098848 -0.62332731 550.88887068 
    16207 0.85064176 -0.31336887 -0.42214755 139.72796728 
    16208 0.04993149 -0.75116732 0.65822072 201.41188634 
    16209 Axis -0.20361536 -0.41664922 0.88597078 
    16210 Axis point 257.53700948 275.74666620 0.00000000 
    16211 Rotation angle (degrees) 126.10442372 
    16212 Shift along axis 8.05806364 
    16213  
    16214 
    16215 > view matrix models
    16216 > #14,0.95359,-0.17829,-0.24263,85.68,0.13992,0.97594,-0.16723,51.564,0.26661,0.12553,0.9556,-42.044
    16217 
    16218 > ui mousemode right "rotate selected models"
    16219 
    16220 > view matrix models
    16221 > #14,0.77597,0.43596,-0.45586,42.497,-0.60229,0.29739,-0.74081,446.35,-0.18739,0.84941,0.49334,-2.4433
    16222 
    16223 > view matrix models
    16224 > #14,0.25527,0.9477,0.19159,-56.137,-0.66384,0.31586,-0.6779,445.25,-0.70296,0.045861,0.70975,228.84
    16225 
    16226 > view matrix models
    16227 > #14,0.034362,0.99933,0.01279,13.482,-0.47909,0.027702,-0.87733,495.72,-0.87709,0.024019,0.47972,311.51
    16228 
    16229 > ui mousemode right "translate selected models"
    16230 
    16231 > view matrix models
    16232 > #14,0.034362,0.99933,0.01279,19.546,-0.47909,0.027702,-0.87733,490.86,-0.87709,0.024019,0.47972,310.97
    16233 
    16234 > fitmap #14 inMap #2
    16235 
    16236 Fit molecule R5_real_space_refined_015.pdb (#14) to map
    16237 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1009 atoms 
    16238 average map value = 6.982, steps = 124 
    16239 shifted from previous position = 5.69 
    16240 rotated from previous position = 16.7 degrees 
    16241 atoms outside contour = 306, contour level = 4.1986 
    16242  
    16243 Position of R5_real_space_refined_015.pdb (#14) relative to
    16244 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    16245 Matrix rotation and translation 
    16246 0.99999814 -0.00191877 0.00019583 0.29587457 
    16247 0.00191919 0.99999579 -0.00217526 -0.01311031 
    16248 -0.00019165 0.00217563 0.99999762 -0.37717802 
    16249 Axis 0.74826206 0.06663871 0.66004785 
    16250 Axis point 0.00000000 164.73131517 -5.47446407 
    16251 Rotation angle (degrees) 0.16657814 
    16252 Shift along axis -0.02843748 
    16253  
    16254 
    16255 > select clear
    16256 
    16257 > select #14/A:136
    16258 
    16259 22 atoms, 24 bonds, 1 residue, 1 model selected 
    16260 
    16261 > select add #14/A:118
    16262 
    16263 42 atoms, 45 bonds, 2 residues, 1 model selected 
    16264 
    16265 > select add #14/A:135
    16266 
    16267 64 atoms, 69 bonds, 3 residues, 1 model selected 
    16268 
    16269 > select add #14/A:134
    16270 
    16271 86 atoms, 93 bonds, 4 residues, 1 model selected 
    16272 
    16273 > select add #14/A:133
    16274 
    16275 108 atoms, 117 bonds, 5 residues, 1 model selected 
    16276 
    16277 > select add #14/A:132
    16278 
    16279 130 atoms, 141 bonds, 6 residues, 1 model selected 
    16280 
    16281 > select add #14/A:131
    16282 
    16283 150 atoms, 162 bonds, 7 residues, 1 model selected 
    16284 
    16285 > select add #14/A:130
    16286 
    16287 173 atoms, 187 bonds, 8 residues, 1 model selected 
    16288 
    16289 > select add #14/A:129
    16290 
    16291 193 atoms, 208 bonds, 9 residues, 1 model selected 
    16292 
    16293 > select add #14/A:128
    16294 
    16295 215 atoms, 232 bonds, 10 residues, 1 model selected 
    16296 
    16297 > select add #14/A:127
    16298 
    16299 237 atoms, 256 bonds, 11 residues, 1 model selected 
    16300 
    16301 > select add #14/A:126
    16302 
    16303 257 atoms, 277 bonds, 12 residues, 1 model selected 
    16304 
    16305 > select add #14/A:125
    16306 
    16307 280 atoms, 302 bonds, 13 residues, 1 model selected 
    16308 
    16309 > select add #14/A:124
    16310 
    16311 302 atoms, 326 bonds, 14 residues, 1 model selected 
    16312 
    16313 > select add #14/A:123
    16314 
    16315 322 atoms, 347 bonds, 15 residues, 1 model selected 
    16316 
    16317 > select add #14/A:122
    16318 
    16319 344 atoms, 371 bonds, 16 residues, 1 model selected 
    16320 
    16321 > select add #14/A:121
    16322 
    16323 364 atoms, 392 bonds, 17 residues, 1 model selected 
    16324 
    16325 > select add #14/A:120
    16326 
    16327 384 atoms, 413 bonds, 18 residues, 1 model selected 
    16328 
    16329 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R6.pdb models #14
    16330 > selectedOnly true relModel #14
    16331 
    16332 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R6.pdb
    16333 
    16334 Chain information for R6.pdb #15 
    16335 --- 
    16336 Chain | Description 
    16337 A | No description available 
    16338  
    16339 
    16340 > delete atoms sel
    16341 
    16342 > delete bonds sel
    16343 
    16344 > select #15/A:132
    16345 
    16346 22 atoms, 24 bonds, 1 residue, 1 model selected 
    16347 
    16348 > view matrix models #15,1,0,0,-32.381,0,1,0,26.552,0,0,1,20.867
    16349 
    16350 > view matrix models #15,1,0,0,3.4378,0,1,0,55.071,0,0,1,22.22
    16351 
    16352 > view matrix models #15,1,0,0,0.20389,0,1,0,50.027,0,0,1,28.038
    16353 
    16354 > ui mousemode right "rotate selected models"
    16355 
    16356 > view matrix models
    16357 > #15,0.57601,0.78799,-0.21745,-27.604,-0.51831,0.14636,-0.84258,464.47,-0.63211,0.59804,0.49273,128.94
    16358 
    16359 > view matrix models
    16360 > #15,0.79428,0.08912,-0.60098,122.09,-0.58579,0.37472,-0.71863,414.89,0.16116,0.92284,0.34984,-87.903
    16361 
    16362 > view matrix models
    16363 > #15,0.80365,-0.14811,-0.57637,163.03,-0.43267,0.51956,-0.73679,355.27,0.40858,0.8415,0.35346,-127.01
    16364 
    16365 > ui mousemode right "translate selected models"
    16366 
    16367 > view matrix models
    16368 > #15,0.80365,-0.14811,-0.57637,158.46,-0.43267,0.51956,-0.73679,356.91,0.40858,0.8415,0.35346,-122.34
    16369 
    16370 > view matrix models
    16371 > #15,0.80365,-0.14811,-0.57637,163.26,-0.43267,0.51956,-0.73679,357.9,0.40858,0.8415,0.35346,-122.52
    16372 
    16373 > view matrix models
    16374 > #15,0.80365,-0.14811,-0.57637,161.63,-0.43267,0.51956,-0.73679,355.38,0.40858,0.8415,0.35346,-118.82
    16375 
    16376 > view matrix models
    16377 > #15,0.80365,-0.14811,-0.57637,164.91,-0.43267,0.51956,-0.73679,355.54,0.40858,0.8415,0.35346,-117.2
    16378 
    16379 > view matrix models
    16380 > #15,0.80365,-0.14811,-0.57637,165.52,-0.43267,0.51956,-0.73679,355.77,0.40858,0.8415,0.35346,-117.45
    16381 
    16382 > view matrix models
    16383 > #15,0.80365,-0.14811,-0.57637,166.32,-0.43267,0.51956,-0.73679,356.36,0.40858,0.8415,0.35346,-117.51
    16384 
    16385 > fitmap #15 inMap #2
    16386 
    16387 Fit molecule R6.pdb (#15) to map
    16388 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 393 atoms 
    16389 average map value = 5.937, steps = 96 
    16390 shifted from previous position = 3.69 
    16391 rotated from previous position = 18.9 degrees 
    16392 atoms outside contour = 126, contour level = 4.1986 
    16393  
    16394 Position of R6.pdb (#15) relative to
    16395 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    16396 Matrix rotation and translation 
    16397 -0.38477259 -0.92105294 -0.06009602 494.50292538 
    16398 0.74751637 -0.27275977 -0.60565781 184.68832310 
    16399 0.54145114 -0.27796328 0.79345263 -29.59609700 
    16400 Axis 0.18167816 -0.33350565 0.92507677 
    16401 Axis point 187.19365573 255.27820863 0.00000000 
    16402 Rotation angle (degrees) 115.59708481 
    16403 Shift along axis 0.86711923 
    16404  
    16405 
    16406 > show #!5 models
    16407 
    16408 > hide #!5 models
    16409 
    16410 > close #5
    16411 
    16412 > show #!3 models
    16413 
    16414 > show #!13 models
    16415 
    16416 > close #4
    16417 
    16418 > show #6 models
    16419 
    16420 > hide #6 models
    16421 
    16422 > show #!12 models
    16423 
    16424 > hide #!13 models
    16425 
    16426 > hide #!14 models
    16427 
    16428 > hide #!15 models
    16429 
    16430 > hide #!2 models
    16431 
    16432 Drag select of 15 residues 
    16433 
    16434 > delete atoms sel
    16435 
    16436 > delete bonds sel
    16437 
    16438 Drag select of 22 residues 
    16439 
    16440 > delete atoms sel
    16441 
    16442 > delete bonds sel
    16443 
    16444 Drag select of 6 residues, 1 pseudobonds 
    16445 
    16446 > delete atoms (#!12 & sel)
    16447 
    16448 > delete bonds (#!12 & sel)
    16449 
    16450 > select #12/B:158
    16451 
    16452 22 atoms, 24 bonds, 1 residue, 1 model selected 
    16453 
    16454 > select #12/B:159
    16455 
    16456 22 atoms, 24 bonds, 1 residue, 1 model selected 
    16457 
    16458 > select add #12/B:158
    16459 
    16460 44 atoms, 48 bonds, 2 residues, 1 model selected 
    16461 
    16462 > delete atoms sel
    16463 
    16464 > delete bonds sel
    16465 
    16466 > select clear
    16467 
    16468 Drag select of 2 residues 
    16469 
    16470 > select clear
    16471 
    16472 No visible atoms or bonds selected 
    16473 
    16474 > hide #3.1 models
    16475 
    16476 > show #3.1 models
    16477 
    16478 > hide #3.1 models
    16479 
    16480 > hide #12.1 models
    16481 
    16482 > show #!2 models
    16483 
    16484 > show #!13 models
    16485 
    16486 > show #!14 models
    16487 
    16488 > show #!15 models
    16489 
    16490 > hide #!12 models
    16491 
    16492 > show #!12 models
    16493 
    16494 > hide #!3 models
    16495 
    16496 > show #!3 models
    16497 
    16498 > hide #!12 models
    16499 
    16500 > show #!12 models
    16501 
    16502 > hide #!13 models
    16503 
    16504 > select #3/A:3
    16505 
    16506 20 atoms, 21 bonds, 1 residue, 1 model selected 
    16507 
    16508 > hide #!3 models
    16509 
    16510 > select add #3
    16511 
    16512 1289 atoms, 1445 bonds, 1 pseudobond, 60 residues, 2 models selected 
    16513 
    16514 > select subtract #3
    16515 
    16516 Nothing selected 
    16517 
    16518 > hide #!12 models
    16519 
    16520 > show #!12 models
    16521 
    16522 > hide #!12 models
    16523 
    16524 > show #!12 models
    16525 
    16526 > hide #!2 models
    16527 
    16528 Drag select of 39 residues 
    16529 
    16530 > delete atoms sel
    16531 
    16532 > delete bonds sel
    16533 
    16534 Drag select of 20 residues 
    16535 
    16536 > delete atoms sel
    16537 
    16538 > delete bonds sel
    16539 
    16540 > show #!2 models
    16541 
    16542 > show #!13 models
    16543 
    16544 > hide #!15 models
    16545 
    16546 > show #!15 models
    16547 
    16548 > hide #!13 models
    16549 
    16550 > combine #12 #14 #15
    16551 
    16552 Remapping chain ID 'A' in R5_real_space_refined_015.pdb #14 to 'C' 
    16553 Remapping chain ID 'A' in R6.pdb #15 to 'D' 
    16554 
    16555 > hide #!4 models
    16556 
    16557 > show #!4 models
    16558 
    16559 > hide #!4 models
    16560 
    16561 > show #!4 models
    16562 
    16563 > hide #!12 models
    16564 
    16565 > hide #!14 models
    16566 
    16567 > hide #!15 models
    16568 
    16569 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R-C.pdb models #4 relModel #4
    16570 
    16571 > open
    16572 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/RealSpaceRefine_16/R-C_real_space_refined_016.pdb
    16573 
    16574 Chain information for R-C_real_space_refined_016.pdb #5 
    16575 --- 
    16576 Chain | Description 
    16577 B | No description available 
    16578 C | No description available 
    16579 D | No description available 
    16580  
    16581 
    16582 > hide #!4 models
    16583 
    16584 > select #5/B:110
    16585 
    16586 23 atoms, 25 bonds, 1 residue, 1 model selected 
    16587 
    16588 > view matrix models #5,1,0,0,-24.148,0,1,0,47.24,0,0,1,-1.7121
    16589 
    16590 > ui mousemode right "rotate selected models"
    16591 
    16592 > view matrix models
    16593 > #5,0.20571,-0.61919,-0.75782,390.12,0.59006,0.69626,-0.40871,46.814,0.78071,-0.36309,0.50859,-17.998
    16594 
    16595 > view matrix models
    16596 > #5,-0.90541,0.36883,-0.21025,358.11,0.10382,-0.28784,-0.95204,419.89,-0.41166,-0.88381,0.22232,379.69
    16597 
    16598 > view matrix models
    16599 > #5,0.18192,0.93002,0.31933,-67.666,-0.38328,0.36612,-0.84797,391.76,-0.90554,0.031867,0.42306,290
    16600 
    16601 > view matrix models
    16602 > #5,0.01387,0.9531,0.30234,-32.619,-0.33791,0.28905,-0.89569,403.99,-0.94108,-0.089742,0.32607,336.14
    16603 
    16604 > view matrix models
    16605 > #5,0.31598,0.89916,0.30277,-88.048,-0.7293,0.43431,-0.52868,397.02,-0.60686,-0.05376,0.79299,174.82
    16606 
    16607 > view matrix models
    16608 > #5,0.33289,0.91845,0.21362,-79.088,-0.6731,0.3901,-0.6283,410.5,-0.66039,0.065363,0.74807,173.55
    16609 
    16610 > ui mousemode right "translate selected models"
    16611 
    16612 > view matrix models
    16613 > #5,0.33289,0.91845,0.21362,-66.03,-0.6731,0.3901,-0.6283,429.35,-0.66039,0.065363,0.74807,204.92
    16614 
    16615 > view matrix models
    16616 > #5,0.33289,0.91845,0.21362,-68.292,-0.6731,0.3901,-0.6283,424.14,-0.66039,0.065363,0.74807,208.42
    16617 
    16618 > view matrix models
    16619 > #5,0.33289,0.91845,0.21362,-69.591,-0.6731,0.3901,-0.6283,424.18,-0.66039,0.065363,0.74807,208.87
    16620 
    16621 > fitmap #5 inMap #2
    16622 
    16623 Fit molecule R-C_real_space_refined_016.pdb (#5) to map
    16624 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1972 atoms 
    16625 average map value = 7.189, steps = 160 
    16626 shifted from previous position = 3.37 
    16627 rotated from previous position = 37.7 degrees 
    16628 atoms outside contour = 417, contour level = 4.1986 
    16629  
    16630 Position of R-C_real_space_refined_016.pdb (#5) relative to
    16631 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    16632 Matrix rotation and translation 
    16633 0.99999737 0.00203637 -0.00105463 -0.21940479 
    16634 -0.00203728 0.99999756 -0.00085845 0.57354136 
    16635 0.00105288 0.00086060 0.99999908 -0.41240431 
    16636 Axis 0.35096126 -0.43027144 -0.83168063 
    16637 Axis point 285.44595458 111.42176711 0.00000000 
    16638 Rotation angle (degrees) 0.14032040 
    16639 Shift along axis 0.01920763 
    16640  
    16641 
    16642 > close #12
    16643 
    16644 > show #!15 models
    16645 
    16646 > hide #!15 models
    16647 
    16648 > show #!13 models
    16649 
    16650 > show #!14 models
    16651 
    16652 > hide #!14 models
    16653 
    16654 > show #!14 models
    16655 
    16656 > hide #!14 models
    16657 
    16658 > close #14
    16659 
    16660 > show #!15 models
    16661 
    16662 > hide #!15 models
    16663 
    16664 > close #15
    16665 
    16666 > show #16 models
    16667 
    16668 > hide #16 models
    16669 
    16670 > show #6 models
    16671 
    16672 > hide #6 models
    16673 
    16674 > show #6 models
    16675 
    16676 > hide #6 models
    16677 
    16678 > show #7 models
    16679 
    16680 > hide #7 models
    16681 
    16682 > show #8 models
    16683 
    16684 > hide #8 models
    16685 
    16686 > show #8 models
    16687 
    16688 > hide #8 models
    16689 
    16690 > show #8 models
    16691 
    16692 > hide #8 models
    16693 
    16694 > show #9 models
    16695 
    16696 > hide #9 models
    16697 
    16698 > show #10 models
    16699 
    16700 > hide #10 models
    16701 
    16702 > show #10 models
    16703 
    16704 > show #!3 models
    16705 
    16706 > hide #!3 models
    16707 
    16708 > show #!3 models
    16709 
    16710 > hide #!3 models
    16711 
    16712 > close #3
    16713 
    16714 > show #!4 models
    16715 
    16716 > hide #!4 models
    16717 
    16718 > show #!4 models
    16719 
    16720 > hide #!4 models
    16721 
    16722 > close #4
    16723 
    16724 > hide #!5 models
    16725 
    16726 > show #!5 models
    16727 
    16728 > show #6 models
    16729 
    16730 > hide #6 models
    16731 
    16732 > hide #10 models
    16733 
    16734 > show #10 models
    16735 
    16736 > show #!11 models
    16737 
    16738 > hide #!11 models
    16739 
    16740 > show #!11 models
    16741 
    16742 > hide #!13 models
    16743 
    16744 > show #!13 models
    16745 
    16746 > hide #!11 models
    16747 
    16748 > show #!11 models
    16749 
    16750 > hide #!11 models
    16751 
    16752 > show #!11 models
    16753 
    16754 > hide #10 models
    16755 
    16756 > show #10 models
    16757 
    16758 > show #16 models
    16759 
    16760 > hide #16 models
    16761 
    16762 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16763 QFlags(NoModifier) 
    16764 
    16765 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16766 QFlags(ShiftModifier) 
    16767 
    16768 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16769 QFlags(ControlModifier) 
    16770 
    16771 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16772 QFlags(ShiftModifier|ControlModifier) 
    16773 
    16774 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16775 QFlags(AltModifier) 
    16776 
    16777 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16778 QFlags(ShiftModifier|AltModifier) 
    16779 
    16780 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16781 QFlags(ControlModifier|AltModifier) 
    16782 
    16783 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16784 QFlags(ShiftModifier|ControlModifier|AltModifier) 
    16785 
    16786 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16787 QFlags(MetaModifier) 
    16788 
    16789 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16790 QFlags(ShiftModifier|MetaModifier) 
    16791 
    16792 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16793 QFlags(ControlModifier|MetaModifier) 
    16794 
    16795 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16796 QFlags(ShiftModifier|ControlModifier|MetaModifier) 
    16797 
    16798 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16799 QFlags(AltModifier|MetaModifier) 
    16800 
    16801 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16802 QFlags(ShiftModifier|AltModifier|MetaModifier) 
    16803 
    16804 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16805 QFlags(ControlModifier|AltModifier|MetaModifier) 
    16806 
    16807 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    16808 QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) 
    16809 
    16810 > combine #5 #10 #11 #13
    16811 
    16812 Remapping chain ID 'A' in R4-1.pdb #11 to 'E' 
    16813 Remapping chain ID 'A' in R-3-4_real_space_refined_011.pdb #13 to 'F' 
    16814 
    16815 > hide #!3 models
    16816 
    16817 > show #!3 models
    16818 
    16819 > hide #!5 models
    16820 
    16821 > hide #10 models
    16822 
    16823 > hide #!11 models
    16824 
    16825 > hide #!13 models
    16826 
    16827 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R7.pdb models #3 relModel #3
    16828 
    16829 > ui tool show "Model Panel"
    16830 
    16831 > show #!5 models
    16832 
    16833 > hide #!3 models
    16834 
    16835 > show #!3 models
    16836 
    16837 > hide #!5 models
    16838 
    16839 > show #!5 models
    16840 
    16841 > hide #!5 models
    16842 
    16843 > select add #5
    16844 
    16845 1972 atoms, 2204 bonds, 3 pseudobonds, 93 residues, 2 models selected 
    16846 
    16847 > select subtract #5
    16848 
    16849 Nothing selected 
    16850 
    16851 > hide #!3 models
    16852 
    16853 > show #!3 models
    16854 
    16855 > hide #!3 models
    16856 
    16857 > show #!3 models
    16858 
    16859 > hide #!3 models
    16860 
    16861 > show #!3 models
    16862 
    16863 > show #!5 models
    16864 
    16865 > hide #!3 models
    16866 
    16867 > close #5
    16868 
    16869 > show #6 models
    16870 
    16871 > select #6/A:579
    16872 
    16873 22 atoms, 24 bonds, 1 residue, 1 model selected 
    16874 
    16875 > ui tool show "Show Sequence Viewer"
    16876 
    16877 > sequence chain #16/A #6/A #7/A #8/A #9/A #10/A #11/A #3/A #3/E
    16878 
    16879 Alignment identifier is 1 
    16880 
    16881 > select #16/A:1 #6/A:1 #7/A:1 #8/A:1 #9/A:1
    16882 
    16883 115 atoms, 125 bonds, 5 residues, 5 models selected 
    16884 
    16885 > select #16/A:1-106 #6/A:1-106 #7/A:1-106 #8/A:1-106 #9/A:1-106 #10/A
    16886 > #11/A:60-73 #3/A/E:60-73
    16887 
    16888 13629 atoms, 15284 bonds, 634 residues, 8 models selected 
    16889 . [ID: 1] region 9 chains [1-106] RMSD: 229.230 
    16890  
    16891 
    16892 > delete atoms (#6 & sel)
    16893 
    16894 > delete bonds (#6 & sel)
    16895 
    16896 > select #16/A:107 #6/A:107 #7/A:107 #8/A:107 #9/A:107
    16897 
    16898 100 atoms, 105 bonds, 5 residues, 5 models selected 
    16899 
    16900 > select #16/A:107-157 #6/A:107-157 #7/A:107-157 #8/A:107-157 #9/A:107-157
    16901 
    16902 5465 atoms, 6125 bonds, 255 residues, 5 models selected 
    16903 . [ID: 1] region 9 chains [107-157] RMSD: 13.326 
    16904  
    16905 
    16906 > delete atoms (#6 & sel)
    16907 
    16908 > delete bonds (#6 & sel)
    16909 
    16910 > select #16/A:158 #6/A:158 #7/A:158 #8/A:158 #9/A:158
    16911 
    16912 110 atoms, 120 bonds, 5 residues, 5 models selected 
    16913 
    16914 > select #16/A:158-174 #6/A:158-174 #7/A:158-174 #8/A:158-174 #9/A:158-174
    16915 > #11/A:165-174 #3/E:165-174
    16916 
    16917 2243 atoms, 2508 bonds, 105 residues, 7 models selected 
    16918 . [ID: 1] region 9 chains [158-174] RMSD: 276.080 
    16919  
    16920 
    16921 > delete atoms (#6 & sel)
    16922 
    16923 > delete bonds (#6 & sel)
    16924 
    16925 Drag select of 22 residues, 45 shapes 
    16926 
    16927 > delete atoms sel
    16928 
    16929 > delete bonds sel
    16930 
    16931 Drag select of 7 residues, 17 shapes 
    16932 
    16933 > delete atoms sel
    16934 
    16935 > delete bonds sel
    16936 
    16937 Drag select of 2 shapes 
    16938 
    16939 > delete atoms sel
    16940 
    16941 > delete bonds sel
    16942 
    16943 Drag select of 35 residues, 69 shapes 
    16944 
    16945 > select add #6/A:191
    16946 
    16947 777 atoms, 25 bonds, 36 residues, 1 model selected 
    16948 
    16949 > select add #6/A:192
    16950 
    16951 797 atoms, 46 bonds, 37 residues, 1 model selected 
    16952 
    16953 > select add #6/A:528
    16954 
    16955 819 atoms, 70 bonds, 38 residues, 1 model selected 
    16956 
    16957 > select add #6/A:527
    16958 
    16959 841 atoms, 94 bonds, 39 residues, 1 model selected 
    16960 
    16961 > select add #6/A:526
    16962 
    16963 861 atoms, 115 bonds, 40 residues, 1 model selected 
    16964 
    16965 > select add #6/A:525
    16966 
    16967 883 atoms, 139 bonds, 41 residues, 1 model selected 
    16968 
    16969 > select add #6/A:193
    16970 
    16971 905 atoms, 163 bonds, 42 residues, 1 model selected 
    16972 
    16973 > select add #6/A:194
    16974 
    16975 927 atoms, 187 bonds, 43 residues, 1 model selected 
    16976 
    16977 > select add #6/A:195
    16978 
    16979 950 atoms, 212 bonds, 44 residues, 1 model selected 
    16980 
    16981 > select add #6/A:196
    16982 
    16983 973 atoms, 237 bonds, 45 residues, 1 model selected 
    16984 
    16985 > select add #6/A:524
    16986 
    16987 995 atoms, 261 bonds, 46 residues, 1 model selected 
    16988 
    16989 > select add #6/A:523
    16990 
    16991 1018 atoms, 286 bonds, 47 residues, 1 model selected 
    16992 
    16993 > select add #6/A:522
    16994 
    16995 1038 atoms, 307 bonds, 48 residues, 1 model selected 
    16996 
    16997 > select add #6/A:520
    16998 
    16999 1080 atoms, 331 bonds, 50 residues, 1 model selected 
    17000 
    17001 > select add #6/A:519
    17002 
    17003 1103 atoms, 356 bonds, 51 residues, 1 model selected 
    17004 
    17005 > select add #6/A:518
    17006 
    17007 1123 atoms, 377 bonds, 52 residues, 1 model selected 
    17008 
    17009 > select add #6/A:517
    17010 
    17011 1146 atoms, 402 bonds, 53 residues, 1 model selected 
    17012 
    17013 > select add #6/A:197
    17014 
    17015 1166 atoms, 423 bonds, 54 residues, 1 model selected 
    17016 
    17017 > select add #6/A:198
    17018 
    17019 1188 atoms, 447 bonds, 55 residues, 1 model selected 
    17020 
    17021 > select add #6/A:346
    17022 
    17023 1210 atoms, 471 bonds, 56 residues, 1 model selected 
    17024 
    17025 > select add #6/A:345
    17026 
    17027 1230 atoms, 492 bonds, 57 residues, 1 model selected 
    17028 
    17029 > select add #6/A:344
    17030 
    17031 1253 atoms, 517 bonds, 58 residues, 1 model selected 
    17032 
    17033 > select add #6/A:343
    17034 
    17035 1276 atoms, 542 bonds, 59 residues, 1 model selected 
    17036 
    17037 > select add #6/A:342
    17038 
    17039 1296 atoms, 563 bonds, 60 residues, 1 model selected 
    17040 
    17041 > select add #6/A:341
    17042 
    17043 1316 atoms, 584 bonds, 61 residues, 1 model selected 
    17044 
    17045 > select add #6/A:340
    17046 
    17047 1339 atoms, 609 bonds, 62 residues, 1 model selected 
    17048 
    17049 > select add #6/A:339
    17050 
    17051 1361 atoms, 633 bonds, 63 residues, 1 model selected 
    17052 
    17053 > select add #6/A:338
    17054 
    17055 1383 atoms, 657 bonds, 64 residues, 1 model selected 
    17056 
    17057 > select add #6/A:337
    17058 
    17059 1406 atoms, 682 bonds, 65 residues, 1 model selected 
    17060 
    17061 > select add #6/A:336
    17062 
    17063 1428 atoms, 706 bonds, 66 residues, 1 model selected 
    17064 
    17065 > select add #6/A:335
    17066 
    17067 1450 atoms, 730 bonds, 67 residues, 1 model selected 
    17068 
    17069 > select add #6/A:203
    17070 
    17071 1472 atoms, 754 bonds, 68 residues, 1 model selected 
    17072 
    17073 > select add #6/A:202
    17074 
    17075 1494 atoms, 778 bonds, 69 residues, 1 model selected 
    17076 
    17077 > select add #6/A:201
    17078 
    17079 1516 atoms, 802 bonds, 70 residues, 1 model selected 
    17080 
    17081 > select add #6/A:200
    17082 
    17083 1539 atoms, 827 bonds, 71 residues, 1 model selected 
    17084 
    17085 > select add #6/A:199
    17086 
    17087 1559 atoms, 848 bonds, 72 residues, 1 model selected 
    17088 
    17089 > select add #6/A:204
    17090 
    17091 1579 atoms, 869 bonds, 73 residues, 1 model selected 
    17092 
    17093 > select add #6/A:205
    17094 
    17095 1599 atoms, 890 bonds, 74 residues, 1 model selected 
    17096 
    17097 > select add #6/A:206
    17098 
    17099 1619 atoms, 911 bonds, 75 residues, 1 model selected 
    17100 
    17101 > select add #6/A:207
    17102 
    17103 1639 atoms, 932 bonds, 76 residues, 1 model selected 
    17104 
    17105 > select add #6/A:208
    17106 
    17107 1659 atoms, 953 bonds, 77 residues, 1 model selected 
    17108 
    17109 > select add #6/A:334
    17110 
    17111 1681 atoms, 977 bonds, 78 residues, 1 model selected 
    17112 
    17113 > select add #6/A:333
    17114 
    17115 1704 atoms, 1002 bonds, 79 residues, 1 model selected 
    17116 
    17117 > select add #6/A:209
    17118 
    17119 1727 atoms, 1027 bonds, 80 residues, 1 model selected 
    17120 
    17121 > select add #6/A:210
    17122 
    17123 1749 atoms, 1051 bonds, 81 residues, 1 model selected 
    17124 
    17125 > select add #6/A:211
    17126 
    17127 1772 atoms, 1076 bonds, 82 residues, 1 model selected 
    17128 
    17129 > select add #6/A:212
    17130 
    17131 1792 atoms, 1097 bonds, 83 residues, 1 model selected 
    17132 
    17133 > select add #6/A:213
    17134 
    17135 1815 atoms, 1122 bonds, 84 residues, 1 model selected 
    17136 
    17137 > select add #6/A:214
    17138 
    17139 1835 atoms, 1143 bonds, 85 residues, 1 model selected 
    17140 
    17141 > select add #6/A:215
    17142 
    17143 1858 atoms, 1168 bonds, 86 residues, 1 model selected 
    17144 
    17145 > select add #6/A:332
    17146 
    17147 1878 atoms, 1189 bonds, 87 residues, 1 model selected 
    17148 
    17149 > select add #6/A:301
    17150 
    17151 1898 atoms, 1210 bonds, 88 residues, 1 model selected 
    17152 
    17153 > select add #6/A:300
    17154 
    17155 1918 atoms, 1231 bonds, 89 residues, 1 model selected 
    17156 
    17157 > select add #6/A:299
    17158 
    17159 1941 atoms, 1256 bonds, 90 residues, 1 model selected 
    17160 
    17161 > select add #6/A:298
    17162 
    17163 1961 atoms, 1277 bonds, 91 residues, 1 model selected 
    17164 
    17165 > select add #6/A:297
    17166 
    17167 1984 atoms, 1302 bonds, 92 residues, 1 model selected 
    17168 
    17169 > select add #6/A:296
    17170 
    17171 2006 atoms, 1326 bonds, 93 residues, 1 model selected 
    17172 
    17173 > select add #6/A:295
    17174 
    17175 2028 atoms, 1350 bonds, 94 residues, 1 model selected 
    17176 
    17177 > select add #6/A:294
    17178 
    17179 2048 atoms, 1371 bonds, 95 residues, 1 model selected 
    17180 
    17181 > select add #6/A:293
    17182 
    17183 2068 atoms, 1392 bonds, 96 residues, 1 model selected 
    17184 
    17185 > select add #6/A:292
    17186 
    17187 2090 atoms, 1416 bonds, 97 residues, 1 model selected 
    17188 
    17189 > select add #6/A:291
    17190 
    17191 2112 atoms, 1440 bonds, 98 residues, 1 model selected 
    17192 
    17193 > select add #6/A:290
    17194 
    17195 2134 atoms, 1464 bonds, 99 residues, 1 model selected 
    17196 
    17197 > select add #6/A:289
    17198 
    17199 2154 atoms, 1485 bonds, 100 residues, 1 model selected 
    17200 
    17201 > select add #6/A:288
    17202 
    17203 2174 atoms, 1506 bonds, 101 residues, 1 model selected 
    17204 
    17205 > select add #6/A:216
    17206 
    17207 2196 atoms, 1530 bonds, 102 residues, 1 model selected 
    17208 
    17209 > select add #6/A:217
    17210 
    17211 2216 atoms, 1551 bonds, 103 residues, 1 model selected 
    17212 
    17213 > select add #6/A:218
    17214 
    17215 2238 atoms, 1575 bonds, 104 residues, 1 model selected 
    17216 
    17217 > select add #6/A:219
    17218 
    17219 2260 atoms, 1599 bonds, 105 residues, 1 model selected 
    17220 
    17221 > select add #6/A:220
    17222 
    17223 2280 atoms, 1620 bonds, 106 residues, 1 model selected 
    17224 
    17225 > select add #6/A:287
    17226 
    17227 2300 atoms, 1641 bonds, 107 residues, 1 model selected 
    17228 
    17229 > select add #6/A:221
    17230 
    17231 2322 atoms, 1665 bonds, 108 residues, 1 model selected 
    17232 
    17233 > select add #6/A:286
    17234 
    17235 2344 atoms, 1689 bonds, 109 residues, 1 model selected 
    17236 
    17237 > select add #6/A:285
    17238 
    17239 2366 atoms, 1713 bonds, 110 residues, 1 model selected 
    17240 
    17241 > select add #6/A:284
    17242 
    17243 2388 atoms, 1737 bonds, 111 residues, 1 model selected 
    17244 
    17245 > select add #6/A:222
    17246 
    17247 2411 atoms, 1762 bonds, 112 residues, 1 model selected 
    17248 
    17249 > select add #6/A:223
    17250 
    17251 2433 atoms, 1786 bonds, 113 residues, 1 model selected 
    17252 
    17253 > select add #6/A:283
    17254 
    17255 2455 atoms, 1810 bonds, 114 residues, 1 model selected 
    17256 
    17257 > delete atoms sel
    17258 
    17259 > delete bonds sel
    17260 
    17261 > select ~sel & ##selected
    17262 
    17263 Nothing selected 
    17264 
    17265 > show #6 target ab
    17266 
    17267 > close #6
    17268 
    17269 > show #7 models
    17270 
    17271 > select #16/A:1 #7/A:1 #8/A:1 #9/A:1
    17272 
    17273 92 atoms, 100 bonds, 4 residues, 4 models selected 
    17274 
    17275 > select #16/A:1-174 #7/A:1-174 #8/A:1-174 #9/A:1-174 #10/A #11/A:60-174
    17276 > #3/A/E:60-174
    17277 
    17278 17604 atoms, 19740 bonds, 2 pseudobonds, 820 residues, 9 models selected 
    17279 . [ID: 1] region 9 chains [1-174] RMSD: 231.891 
    17280  
    17281 
    17282 > delete atoms (#7 & sel)
    17283 
    17284 > delete bonds (#7 & sel)
    17285 
    17286 Drag select of 22 residues, 41 shapes 
    17287 
    17288 > delete atoms sel
    17289 
    17290 > delete bonds sel
    17291 
    17292 Drag select of 7 residues, 1 pseudobonds, 18 shapes 
    17293 
    17294 > delete atoms (#!7 & sel)
    17295 
    17296 > delete bonds (#!7 & sel)
    17297 
    17298 > select #7/A:549
    17299 
    17300 23 atoms, 25 bonds, 1 residue, 1 model selected 
    17301 
    17302 > select add #7/A:548
    17303 
    17304 45 atoms, 49 bonds, 2 residues, 1 model selected 
    17305 
    17306 > delete atoms sel
    17307 
    17308 > delete bonds sel
    17309 
    17310 > select #7/A:196
    17311 
    17312 23 atoms, 25 bonds, 1 residue, 1 model selected 
    17313 
    17314 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17315 QFlags(NoModifier) 
    17316 
    17317 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17318 QFlags(ShiftModifier) 
    17319 
    17320 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17321 QFlags(ControlModifier) 
    17322 
    17323 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17324 QFlags(ShiftModifier|ControlModifier) 
    17325 
    17326 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17327 QFlags(AltModifier) 
    17328 
    17329 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17330 QFlags(ShiftModifier|AltModifier) 
    17331 
    17332 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17333 QFlags(ControlModifier|AltModifier) 
    17334 
    17335 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17336 QFlags(ShiftModifier|ControlModifier|AltModifier) 
    17337 
    17338 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17339 QFlags(MetaModifier) 
    17340 
    17341 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17342 QFlags(ShiftModifier|MetaModifier) 
    17343 
    17344 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17345 QFlags(ControlModifier|MetaModifier) 
    17346 
    17347 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17348 QFlags(ShiftModifier|ControlModifier|MetaModifier) 
    17349 
    17350 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17351 QFlags(AltModifier|MetaModifier) 
    17352 
    17353 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17354 QFlags(ShiftModifier|AltModifier|MetaModifier) 
    17355 
    17356 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17357 QFlags(ControlModifier|AltModifier|MetaModifier) 
    17358 
    17359 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    17360 QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) 
    17361 
    17362 > select up
    17363 
    17364 8007 atoms, 8979 bonds, 373 residues, 1 model selected 
    17365 
    17366 > hide sel target a
    17367 
    17368 > select clear
    17369 
    17370 Drag select of 33 residues 
    17371 
    17372 > select add #7/A:189
    17373 
    17374 734 atoms, 25 bonds, 34 residues, 1 model selected 
    17375 
    17376 > select add #7/A:190
    17377 
    17378 754 atoms, 46 bonds, 35 residues, 1 model selected 
    17379 
    17380 > select add #7/A:191
    17381 
    17382 777 atoms, 71 bonds, 36 residues, 1 model selected 
    17383 
    17384 > select add #7/A:528
    17385 
    17386 799 atoms, 95 bonds, 37 residues, 1 model selected 
    17387 
    17388 > select add #7/A:527
    17389 
    17390 821 atoms, 119 bonds, 38 residues, 1 model selected 
    17391 
    17392 > select add #7/A:526
    17393 
    17394 841 atoms, 140 bonds, 39 residues, 1 model selected 
    17395 
    17396 > select add #7/A:525
    17397 
    17398 863 atoms, 164 bonds, 40 residues, 1 model selected 
    17399 
    17400 > select add #7/A:524
    17401 
    17402 885 atoms, 188 bonds, 41 residues, 1 model selected 
    17403 
    17404 > select add #7/A:523
    17405 
    17406 908 atoms, 213 bonds, 42 residues, 1 model selected 
    17407 
    17408 > select add #7/A:522
    17409 
    17410 928 atoms, 234 bonds, 43 residues, 1 model selected 
    17411 
    17412 > select add #7/A:521
    17413 
    17414 948 atoms, 255 bonds, 44 residues, 1 model selected 
    17415 
    17416 > select add #7/A:520
    17417 
    17418 970 atoms, 279 bonds, 45 residues, 1 model selected 
    17419 
    17420 > select add #7/A:519
    17421 
    17422 993 atoms, 304 bonds, 46 residues, 1 model selected 
    17423 
    17424 > select add #7/A:518
    17425 
    17426 1013 atoms, 325 bonds, 47 residues, 1 model selected 
    17427 
    17428 > select add #7/A:517
    17429 
    17430 1036 atoms, 350 bonds, 48 residues, 1 model selected 
    17431 
    17432 > select add #7/A:516
    17433 
    17434 1056 atoms, 371 bonds, 49 residues, 1 model selected 
    17435 
    17436 > select add #7/A:192
    17437 
    17438 1076 atoms, 392 bonds, 50 residues, 1 model selected 
    17439 
    17440 > select add #7/A:193
    17441 
    17442 1098 atoms, 416 bonds, 51 residues, 1 model selected 
    17443 
    17444 > select add #7/A:194
    17445 
    17446 1120 atoms, 440 bonds, 52 residues, 1 model selected 
    17447 
    17448 > select add #7/A:195
    17449 
    17450 1143 atoms, 465 bonds, 53 residues, 1 model selected 
    17451 
    17452 > select add #7/A:196
    17453 
    17454 1166 atoms, 490 bonds, 54 residues, 1 model selected 
    17455 
    17456 > select add #7/A:197
    17457 
    17458 1186 atoms, 511 bonds, 55 residues, 1 model selected 
    17459 
    17460 > select add #7/A:198
    17461 
    17462 1208 atoms, 535 bonds, 56 residues, 1 model selected 
    17463 
    17464 > select add #7/A:345
    17465 
    17466 1228 atoms, 556 bonds, 57 residues, 1 model selected 
    17467 
    17468 > select add #7/A:344
    17469 
    17470 1251 atoms, 581 bonds, 58 residues, 1 model selected 
    17471 
    17472 > select add #7/A:343
    17473 
    17474 1274 atoms, 606 bonds, 59 residues, 1 model selected 
    17475 
    17476 > select add #7/A:346
    17477 
    17478 1296 atoms, 630 bonds, 60 residues, 1 model selected 
    17479 
    17480 > select add #7/A:347
    17481 
    17482 1316 atoms, 651 bonds, 61 residues, 1 model selected 
    17483 
    17484 > select add #7/A:342
    17485 
    17486 1336 atoms, 672 bonds, 62 residues, 1 model selected 
    17487 
    17488 > select add #7/A:341
    17489 
    17490 1356 atoms, 693 bonds, 63 residues, 1 model selected 
    17491 
    17492 > select add #7/A:340
    17493 
    17494 1379 atoms, 718 bonds, 64 residues, 1 model selected 
    17495 
    17496 > select add #7/A:339
    17497 
    17498 1401 atoms, 742 bonds, 65 residues, 1 model selected 
    17499 
    17500 > select add #7/A:338
    17501 
    17502 1423 atoms, 766 bonds, 66 residues, 1 model selected 
    17503 
    17504 > select add #7/A:199
    17505 
    17506 1443 atoms, 787 bonds, 67 residues, 1 model selected 
    17507 
    17508 > select add #7/A:200
    17509 
    17510 1466 atoms, 812 bonds, 68 residues, 1 model selected 
    17511 
    17512 > select add #7/A:201
    17513 
    17514 1488 atoms, 836 bonds, 69 residues, 1 model selected 
    17515 
    17516 > select add #7/A:202
    17517 
    17518 1510 atoms, 860 bonds, 70 residues, 1 model selected 
    17519 
    17520 > select add #7/A:203
    17521 
    17522 1532 atoms, 884 bonds, 71 residues, 1 model selected 
    17523 
    17524 > select add #7/A:337
    17525 
    17526 1555 atoms, 909 bonds, 72 residues, 1 model selected 
    17527 
    17528 > select add #7/A:336
    17529 
    17530 1577 atoms, 933 bonds, 73 residues, 1 model selected 
    17531 
    17532 > select add #7/A:335
    17533 
    17534 1599 atoms, 957 bonds, 74 residues, 1 model selected 
    17535 
    17536 > select add #7/A:334
    17537 
    17538 1621 atoms, 981 bonds, 75 residues, 1 model selected 
    17539 
    17540 > select add #7/A:333
    17541 
    17542 1644 atoms, 1006 bonds, 76 residues, 1 model selected 
    17543 
    17544 > select add #7/A:332
    17545 
    17546 1664 atoms, 1027 bonds, 77 residues, 1 model selected 
    17547 
    17548 > select add #7/A:331
    17549 
    17550 1686 atoms, 1051 bonds, 78 residues, 1 model selected 
    17551 
    17552 > select add #7/A:204
    17553 
    17554 1706 atoms, 1072 bonds, 79 residues, 1 model selected 
    17555 
    17556 > select add #7/A:205
    17557 
    17558 1726 atoms, 1093 bonds, 80 residues, 1 model selected 
    17559 
    17560 > select add #7/A:206
    17561 
    17562 1746 atoms, 1114 bonds, 81 residues, 1 model selected 
    17563 
    17564 > select add #7/A:207
    17565 
    17566 1766 atoms, 1135 bonds, 82 residues, 1 model selected 
    17567 
    17568 > select add #7/A:208
    17569 
    17570 1786 atoms, 1156 bonds, 83 residues, 1 model selected 
    17571 
    17572 > select add #7/A:209
    17573 
    17574 1809 atoms, 1181 bonds, 84 residues, 1 model selected 
    17575 
    17576 > select add #7/A:210
    17577 
    17578 1831 atoms, 1205 bonds, 85 residues, 1 model selected 
    17579 
    17580 > select add #7/A:211
    17581 
    17582 1854 atoms, 1230 bonds, 86 residues, 1 model selected 
    17583 
    17584 > select add #7/A:303
    17585 
    17586 1874 atoms, 1251 bonds, 87 residues, 1 model selected 
    17587 
    17588 > select add #7/A:302
    17589 
    17590 1894 atoms, 1272 bonds, 88 residues, 1 model selected 
    17591 
    17592 > select add #7/A:301
    17593 
    17594 1914 atoms, 1293 bonds, 89 residues, 1 model selected 
    17595 
    17596 > select add #7/A:300
    17597 
    17598 1934 atoms, 1314 bonds, 90 residues, 1 model selected 
    17599 
    17600 > select add #7/A:299
    17601 
    17602 1957 atoms, 1339 bonds, 91 residues, 1 model selected 
    17603 
    17604 > select add #7/A:298
    17605 
    17606 1977 atoms, 1360 bonds, 92 residues, 1 model selected 
    17607 
    17608 > select add #7/A:297
    17609 
    17610 2000 atoms, 1385 bonds, 93 residues, 1 model selected 
    17611 
    17612 > select add #7/A:296
    17613 
    17614 2022 atoms, 1409 bonds, 94 residues, 1 model selected 
    17615 
    17616 > select add #7/A:295
    17617 
    17618 2044 atoms, 1433 bonds, 95 residues, 1 model selected 
    17619 
    17620 > select add #7/A:212
    17621 
    17622 2064 atoms, 1454 bonds, 96 residues, 1 model selected 
    17623 
    17624 > select add #7/A:213
    17625 
    17626 2087 atoms, 1479 bonds, 97 residues, 1 model selected 
    17627 
    17628 > select add #7/A:214
    17629 
    17630 2107 atoms, 1500 bonds, 98 residues, 1 model selected 
    17631 
    17632 > select add #7/A:215
    17633 
    17634 2130 atoms, 1525 bonds, 99 residues, 1 model selected 
    17635 
    17636 > select add #7/A:294
    17637 
    17638 2150 atoms, 1546 bonds, 100 residues, 1 model selected 
    17639 
    17640 > select add #7/A:217
    17641 
    17642 2170 atoms, 1567 bonds, 101 residues, 1 model selected 
    17643 
    17644 > select add #7/A:216
    17645 
    17646 2192 atoms, 1591 bonds, 102 residues, 1 model selected 
    17647 
    17648 > select add #7/A:293
    17649 
    17650 2212 atoms, 1612 bonds, 103 residues, 1 model selected 
    17651 
    17652 > select add #7/A:292
    17653 
    17654 2234 atoms, 1636 bonds, 104 residues, 1 model selected 
    17655 
    17656 > select add #7/A:291
    17657 
    17658 2256 atoms, 1660 bonds, 105 residues, 1 model selected 
    17659 
    17660 > select add #7/A:290
    17661 
    17662 2278 atoms, 1684 bonds, 106 residues, 1 model selected 
    17663 
    17664 > select add #7/A:289
    17665 
    17666 2298 atoms, 1705 bonds, 107 residues, 1 model selected 
    17667 
    17668 > select add #7/A:288
    17669 
    17670 2318 atoms, 1726 bonds, 108 residues, 1 model selected 
    17671 
    17672 > select add #7/A:287
    17673 
    17674 2338 atoms, 1747 bonds, 109 residues, 1 model selected 
    17675 
    17676 > select add #7/A:286
    17677 
    17678 2360 atoms, 1771 bonds, 110 residues, 1 model selected 
    17679 
    17680 > select add #7/A:285
    17681 
    17682 2382 atoms, 1795 bonds, 111 residues, 1 model selected 
    17683 
    17684 > select add #7/A:218
    17685 
    17686 2404 atoms, 1819 bonds, 112 residues, 1 model selected 
    17687 
    17688 > select add #7/A:219
    17689 
    17690 2426 atoms, 1843 bonds, 113 residues, 1 model selected 
    17691 
    17692 > select add #7/A:220
    17693 
    17694 2446 atoms, 1864 bonds, 114 residues, 1 model selected 
    17695 
    17696 > select add #7/A:221
    17697 
    17698 2468 atoms, 1888 bonds, 115 residues, 1 model selected 
    17699 
    17700 > select add #7/A:222
    17701 
    17702 2491 atoms, 1913 bonds, 116 residues, 1 model selected 
    17703 
    17704 > select add #7/A:223
    17705 
    17706 2513 atoms, 1937 bonds, 117 residues, 1 model selected 
    17707 
    17708 > select add #7/A:284
    17709 
    17710 2535 atoms, 1961 bonds, 118 residues, 1 model selected 
    17711 
    17712 > select add #7/A:283
    17713 
    17714 2557 atoms, 1985 bonds, 119 residues, 1 model selected 
    17715 
    17716 > select add #7/A:282
    17717 
    17718 2580 atoms, 2010 bonds, 120 residues, 1 model selected 
    17719 
    17720 > select ~sel & ##selected
    17721 
    17722 5427 atoms, 6088 bonds, 253 residues, 1 model selected 
    17723 
    17724 > delete atoms sel
    17725 
    17726 > delete bonds sel
    17727 
    17728 > show #!2 models
    17729 
    17730 Drag select of 59 residues, 2 pseudobonds 
    17731 
    17732 > view matrix models #7,1,0,0,327.9,0,1,0,125.68,0,0,1,110.4
    17733 
    17734 > view matrix models #7,1,0,0,226.99,0,1,0,131.94,0,0,1,143.97
    17735 
    17736 > view matrix models #7,1,0,0,262.06,0,1,0,151.77,0,0,1,235.68
    17737 
    17738 > view matrix models #7,1,0,0,253.24,0,1,0,191.71,0,0,1,226.87
    17739 
    17740 > ui mousemode right "rotate selected models"
    17741 
    17742 > view matrix models
    17743 > #7,0.45894,-0.62545,0.63102,245.99,-0.83248,-0.054585,0.55136,182.73,-0.3104,-0.77835,-0.54573,232.63
    17744 
    17745 > view matrix models
    17746 > #7,-0.82158,-0.56218,-0.09463,232.48,-0.56683,0.78786,0.24079,184.22,-0.060814,0.25147,-0.96595,233.66
    17747 
    17748 > view matrix models
    17749 > #7,-0.68019,0.22537,0.69753,227.8,0.37654,-0.70901,0.59625,200.57,0.62893,0.66821,0.39741,234.96
    17750 
    17751 > view matrix models
    17752 > #7,0.23534,-0.0087982,0.97187,239.25,0.42358,-0.89907,-0.11071,204.98,0.87476,0.43772,-0.20786,241.63
    17753 
    17754 > view matrix models
    17755 > #7,0.95628,-0.25272,0.14721,253.02,-0.041787,-0.61624,-0.78645,200.86,0.28947,0.74591,-0.59986,234.64
    17756 
    17757 > view matrix models
    17758 > #7,0.41136,-0.14,0.90066,242.32,0.6535,-0.64353,-0.39851,208.19,0.63539,0.75251,-0.17323,237.2
    17759 
    17760 > view matrix models
    17761 > #7,0.40135,-0.15332,0.903,242.23,0.63031,-0.66908,-0.39375,207.97,0.66455,0.72721,-0.17189,237.66
    17762 
    17763 > view matrix models
    17764 > #7,0.40494,-0.41099,0.81677,243.65,0.61338,-0.54035,-0.57601,208.05,0.67807,0.73424,0.033284,236.92
    17765 
    17766 > ui mousemode right "translate selected models"
    17767 
    17768 > view matrix models
    17769 > #7,0.40494,-0.41099,0.81677,222.68,0.61338,-0.54035,-0.57601,213.27,0.67807,0.73424,0.033284,242.22
    17770 
    17771 > ui mousemode right "translate selected models"
    17772 
    17773 > ui mousemode right "rotate selected models"
    17774 
    17775 > view matrix models
    17776 > #7,0.61089,-0.36018,0.70504,225.61,0.5652,-0.42518,-0.70694,212.77,0.5544,0.83035,-0.056164,240.65
    17777 
    17778 > view matrix models
    17779 > #7,-0.11899,-0.62398,0.77233,216.99,0.63831,-0.64389,-0.42187,213.32,0.76053,0.44278,0.47491,242.49
    17780 
    17781 > view matrix models
    17782 > #7,-0.062468,-0.66436,0.7448,217.99,0.53078,-0.65409,-0.53892,212.49,0.8452,0.36166,0.39349,244.24
    17783 
    17784 > fitmap #7 inMap #2
    17785 
    17786 Fit molecule fold_r_efa_model_0.cif (#7) to map
    17787 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 2580 atoms 
    17788 average map value = 2.314, steps = 304 
    17789 shifted from previous position = 6.74 
    17790 rotated from previous position = 18.9 degrees 
    17791 atoms outside contour = 1899, contour level = 4.1986 
    17792  
    17793 Position of fold_r_efa_model_0.cif (#7) relative to
    17794 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    17795 Matrix rotation and translation 
    17796 -0.99542957 0.06179645 0.07280921 195.98598978 
    17797 0.00808479 -0.70514258 0.70901945 186.66807106 
    17798 0.09515576 0.70636757 0.70142016 212.62408844 
    17799 Axis -0.04553739 -0.38372897 -0.92232230 
    17800 Axis point 93.37961520 47.65559353 0.00000000 
    17801 Rotation angle (degrees) 178.33144731 
    17802 Shift along axis -276.66257481 
    17803  
    17804 
    17805 > select add #7/A:528
    17806 
    17807 1286 atoms, 24 bonds, 2 pseudobonds, 60 residues, 2 models selected 
    17808 
    17809 > select add #7/A:191
    17810 
    17811 1309 atoms, 49 bonds, 2 pseudobonds, 61 residues, 2 models selected 
    17812 
    17813 > select add #7/A:192
    17814 
    17815 1329 atoms, 70 bonds, 2 pseudobonds, 62 residues, 2 models selected 
    17816 
    17817 > select add #7/A:193
    17818 
    17819 1351 atoms, 94 bonds, 2 pseudobonds, 63 residues, 2 models selected 
    17820 
    17821 > select add #7/A:194
    17822 
    17823 1373 atoms, 118 bonds, 2 pseudobonds, 64 residues, 2 models selected 
    17824 
    17825 > select add #7/A:195
    17826 
    17827 1396 atoms, 143 bonds, 2 pseudobonds, 65 residues, 2 models selected 
    17828 
    17829 > select add #7/A:196
    17830 
    17831 1419 atoms, 168 bonds, 2 pseudobonds, 66 residues, 2 models selected 
    17832 
    17833 > select add #7/A:197
    17834 
    17835 1439 atoms, 189 bonds, 2 pseudobonds, 67 residues, 2 models selected 
    17836 
    17837 > select add #7/A:198
    17838 
    17839 1461 atoms, 213 bonds, 2 pseudobonds, 68 residues, 2 models selected 
    17840 
    17841 > select add #7/A:343
    17842 
    17843 1484 atoms, 238 bonds, 2 pseudobonds, 69 residues, 2 models selected 
    17844 
    17845 > select add #7/A:344
    17846 
    17847 1507 atoms, 263 bonds, 2 pseudobonds, 70 residues, 2 models selected 
    17848 
    17849 > select add #7/A:345
    17850 
    17851 1527 atoms, 284 bonds, 2 pseudobonds, 71 residues, 2 models selected 
    17852 
    17853 > select add #7/A:346
    17854 
    17855 1549 atoms, 308 bonds, 2 pseudobonds, 72 residues, 2 models selected 
    17856 
    17857 > select add #7/A:347
    17858 
    17859 1569 atoms, 329 bonds, 2 pseudobonds, 73 residues, 2 models selected 
    17860 
    17861 > select add #7/A:527
    17862 
    17863 1591 atoms, 353 bonds, 2 pseudobonds, 74 residues, 2 models selected 
    17864 
    17865 > select add #7/A:526
    17866 
    17867 1611 atoms, 374 bonds, 2 pseudobonds, 75 residues, 2 models selected 
    17868 
    17869 > select add #7/A:525
    17870 
    17871 1633 atoms, 398 bonds, 2 pseudobonds, 76 residues, 2 models selected 
    17872 
    17873 > select add #7/A:524
    17874 
    17875 1655 atoms, 422 bonds, 2 pseudobonds, 77 residues, 2 models selected 
    17876 
    17877 > select add #7/A:523
    17878 
    17879 1678 atoms, 447 bonds, 2 pseudobonds, 78 residues, 2 models selected 
    17880 
    17881 > select add #7/A:522
    17882 
    17883 1698 atoms, 468 bonds, 2 pseudobonds, 79 residues, 2 models selected 
    17884 
    17885 > select add #7/A:521
    17886 
    17887 1718 atoms, 489 bonds, 2 pseudobonds, 80 residues, 2 models selected 
    17888 
    17889 > select add #7/A:520
    17890 
    17891 1740 atoms, 513 bonds, 2 pseudobonds, 81 residues, 2 models selected 
    17892 
    17893 > select add #7/A:519
    17894 
    17895 1763 atoms, 538 bonds, 2 pseudobonds, 82 residues, 2 models selected 
    17896 
    17897 > select add #7/A:518
    17898 
    17899 1783 atoms, 559 bonds, 2 pseudobonds, 83 residues, 2 models selected 
    17900 
    17901 > select add #7/A:517
    17902 
    17903 1806 atoms, 584 bonds, 2 pseudobonds, 84 residues, 2 models selected 
    17904 
    17905 > select add #7/A:516
    17906 
    17907 1826 atoms, 605 bonds, 2 pseudobonds, 85 residues, 2 models selected 
    17908 
    17909 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R8.pdb models #7 selectedOnly
    17910 > true relModel #7
    17911 
    17912 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R8.pdb
    17913 
    17914 Chain information for R8.pdb #4 
    17915 --- 
    17916 Chain | Description 
    17917 A | No description available 
    17918  
    17919 
    17920 > delete atoms (#!7 & sel)
    17921 
    17922 > delete bonds (#!7 & sel)
    17923 
    17924 Drag select of 85 residues, 3 pseudobonds, 255 shapes 
    17925 
    17926 > ui mousemode right "translate selected models"
    17927 
    17928 > view matrix models #4,1,0,0,178.84,0,1,0,123.78,0,0,1,298.24
    17929 
    17930 > view matrix models #4,1,0,0,208.77,0,1,0,203.93,0,0,1,277.3
    17931 
    17932 > ui mousemode right "rotate selected models"
    17933 
    17934 > view matrix models
    17935 > #4,0.23664,-0.93138,0.27663,219.59,-0.025379,-0.29054,-0.95653,235.47,0.97127,0.21933,-0.092393,287.99
    17936 
    17937 > view matrix models
    17938 > #4,0.60403,-0.71685,-0.34824,221.39,-0.44551,0.058597,-0.89336,222.88,0.66081,0.69476,-0.28397,274.93
    17939 
    17940 > view matrix models
    17941 > #4,0.29571,-0.95327,0.061883,221.42,-0.66986,-0.25311,-0.69802,226.39,0.68106,0.16496,-0.7134,288.39
    17942 
    17943 > view matrix models
    17944 > #4,0.44129,-0.89699,-0.025832,222.22,-0.43169,-0.18697,-0.88243,228.35,0.7867,0.40056,-0.46973,283.49
    17945 
    17946 > ui mousemode right "translate selected models"
    17947 
    17948 > view matrix models
    17949 > #4,0.44129,-0.89699,-0.025832,221.98,-0.43169,-0.18697,-0.88243,203.6,0.7867,0.40056,-0.46973,263.68
    17950 
    17951 > view matrix models
    17952 > #4,0.44129,-0.89699,-0.025832,227.71,-0.43169,-0.18697,-0.88243,212.72,0.7867,0.40056,-0.46973,256.85
    17953 
    17954 > view matrix models
    17955 > #4,0.44129,-0.89699,-0.025832,242.11,-0.43169,-0.18697,-0.88243,217.57,0.7867,0.40056,-0.46973,250.28
    17956 
    17957 > ui mousemode right "rotate selected models"
    17958 
    17959 > view matrix models
    17960 > #4,0.087068,-0.87383,0.47837,235.65,-0.56111,-0.4398,-0.70124,220.91,0.82315,-0.20737,-0.52861,264.14
    17961 
    17962 > view matrix models
    17963 > #4,0.083169,-0.86382,0.49689,235.32,-0.54612,-0.45659,-0.70234,221.45,0.83357,-0.21295,-0.50973,264.31
    17964 
    17965 > ui mousemode right "translate selected models"
    17966 
    17967 > view matrix models
    17968 > #4,0.083169,-0.86382,0.49689,233.28,-0.54612,-0.45659,-0.70234,216.91,0.83357,-0.21295,-0.50973,267.78
    17969 
    17970 > view matrix models
    17971 > #4,0.083169,-0.86382,0.49689,229.42,-0.54612,-0.45659,-0.70234,211.6,0.83357,-0.21295,-0.50973,253.29
    17972 
    17973 > view matrix models
    17974 > #4,0.083169,-0.86382,0.49689,232.21,-0.54612,-0.45659,-0.70234,211.29,0.83357,-0.21295,-0.50973,253.87
    17975 
    17976 > fitmap #4 inMap #2
    17977 
    17978 Fit molecule R8.pdb (#4) to map cryosparc_P104_J81_mono_3dot25_map_emready.mrc
    17979 (#2) using 1826 atoms 
    17980 average map value = 3.813, steps = 272 
    17981 shifted from previous position = 3.67 
    17982 rotated from previous position = 23.2 degrees 
    17983 atoms outside contour = 1098, contour level = 4.1986 
    17984  
    17985 Position of R8.pdb (#4) relative to
    17986 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    17987 Matrix rotation and translation 
    17988 -0.41193455 0.27849177 0.86761297 193.92437796 
    17989 0.13314666 -0.92353531 0.35965886 205.85103928 
    17990 0.90143324 0.26367568 0.34335586 223.26476200 
    17991 Axis -0.54096041 -0.19061080 -0.81916382 
    17992 Axis point 27.13560776 76.48832043 0.00000000 
    17993 Rotation angle (degrees) 174.91028300 
    17994 Shift along axis -327.03325619 
    17995  
    17996 
    17997 > combine #4 #7
    17998 
    17999 Remapping chain ID 'A' in fold_r_efa_model_0.cif #7 to 'B' 
    18000 
    18001 > hide #!4 models
    18002 
    18003 > hide #!7 models
    18004 
    18005 > show #!7 models
    18006 
    18007 > hide #!7 models
    18008 
    18009 > hide #!5 models
    18010 
    18011 > show #!5 models
    18012 
    18013 > hide #!5 models
    18014 
    18015 > show #!5 models
    18016 
    18017 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R9.pdb models #5 relModel #2
    18018 
    18019 > open
    18020 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/RealSpaceRefine_19/R9_real_space_refined_019.pdb
    18021 
    18022 Chain information for R9_real_space_refined_019.pdb #6 
    18023 --- 
    18024 Chain | Description 
    18025 A | No description available 
    18026 B | No description available 
    18027  
    18028 
    18029 > hide #!6 models
    18030 
    18031 > show #!6 models
    18032 
    18033 > hide #!5 models
    18034 
    18035 > select #6/A:207
    18036 
    18037 20 atoms, 21 bonds, 1 residue, 1 model selected 
    18038 
    18039 > ui mousemode right "rotate selected models"
    18040 
    18041 > view matrix models
    18042 > #6,0.56155,0.7126,0.42055,-125.55,0.16936,0.39851,-0.90139,258.07,-0.80993,0.5774,0.1031,241.2
    18043 
    18044 > view matrix models
    18045 > #6,-0.33877,0.94046,-0.027863,108.25,-0.2706,-0.12575,-0.95444,456.52,-0.90111,-0.3158,0.29709,386.12
    18046 
    18047 > view matrix models
    18048 > #6,-0.054339,0.99848,-0.0087084,34.877,-0.84384,-0.050582,-0.5342,476.75,-0.53383,-0.021679,0.84531,145.58
    18049 
    18050 > fitmap #6 inMap #2
    18051 
    18052 Fit molecule R9_real_space_refined_019.pdb (#6) to map
    18053 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 2580 atoms 
    18054 average map value = 5.888, steps = 388 
    18055 shifted from previous position = 41.3 
    18056 rotated from previous position = 26.7 degrees 
    18057 atoms outside contour = 949, contour level = 4.1986 
    18058  
    18059 Position of R9_real_space_refined_019.pdb (#6) relative to
    18060 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    18061 Matrix rotation and translation 
    18062 0.99999799 -0.00138235 -0.00144943 0.59930712 
    18063 0.00138084 0.99999850 -0.00104156 -0.06574939 
    18064 0.00145087 0.00103955 0.99999841 -0.53285920 
    18065 Axis 0.46101471 -0.64248422 0.61211066 
    18066 Axis point 364.50337386 0.00000000 415.40196387 
    18067 Rotation angle (degrees) 0.12932230 
    18068 Shift along axis -0.00763645 
    18069  
    18070 
    18071 > show #!13 models
    18072 
    18073 > show #!5 models
    18074 
    18075 > hide #!5 models
    18076 
    18077 > show #!3 models
    18078 
    18079 > hide #!3 models
    18080 
    18081 > show #!3 models
    18082 
    18083 > open
    18084 > /Users/lingxiaobin/Desktop/ROOL:GOLLD/RealSpaceRefine_18/R7_real_space_refined_018.pdb
    18085 
    18086 Chain information for R7_real_space_refined_018.pdb #12 
    18087 --- 
    18088 Chain | Description 
    18089 A | No description available 
    18090 B | No description available 
    18091 C | No description available 
    18092 D | No description available 
    18093 E | No description available 
    18094 F | No description available 
    18095  
    18096 
    18097 > select #12/B:86@OP1
    18098 
    18099 1 atom, 1 residue, 1 model selected 
    18100 
    18101 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18102 QFlags(NoModifier) 
    18103 
    18104 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18105 QFlags(ShiftModifier) 
    18106 
    18107 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18108 QFlags(ControlModifier) 
    18109 
    18110 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18111 QFlags(ShiftModifier|ControlModifier) 
    18112 
    18113 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18114 QFlags(AltModifier) 
    18115 
    18116 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18117 QFlags(ShiftModifier|AltModifier) 
    18118 
    18119 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18120 QFlags(ControlModifier|AltModifier) 
    18121 
    18122 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18123 QFlags(ShiftModifier|ControlModifier|AltModifier) 
    18124 
    18125 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18126 QFlags(MetaModifier) 
    18127 
    18128 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18129 QFlags(ShiftModifier|MetaModifier) 
    18130 
    18131 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18132 QFlags(ControlModifier|MetaModifier) 
    18133 
    18134 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18135 QFlags(ShiftModifier|ControlModifier|MetaModifier) 
    18136 
    18137 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18138 QFlags(AltModifier|MetaModifier) 
    18139 
    18140 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18141 QFlags(ShiftModifier|AltModifier|MetaModifier) 
    18142 
    18143 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18144 QFlags(ControlModifier|AltModifier|MetaModifier) 
    18145 
    18146 Mismatch between Cocoa '\x0' and Carbon '\x1e' for virtual key 126 with
    18147 QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) 
    18148 
    18149 > select up
    18150 
    18151 23 atoms, 25 bonds, 1 residue, 1 model selected 
    18152 
    18153 > select up
    18154 
    18155 963 atoms, 1077 bonds, 45 residues, 1 model selected 
    18156 
    18157 > select up
    18158 
    18159 4617 atoms, 5167 bonds, 216 residues, 1 model selected 
    18160 
    18161 > style sel stick
    18162 
    18163 Changed 4617 atom styles 
    18164 
    18165 > cartoon sel
    18166 
    18167 > hide #!3 models
    18168 
    18169 > view matrix models
    18170 > #12,0.45399,0.53679,0.71116,-103.75,-0.35617,0.84094,-0.40738,173.75,-0.81672,-0.068346,0.57297,257.9
    18171 
    18172 > view matrix models
    18173 > #12,-0.25584,0.8724,0.41649,32.268,-0.73114,0.10724,-0.67375,438,-0.63244,-0.47688,0.61041,290.54
    18174 
    18175 > view matrix models
    18176 > #12,-0.38286,0.85322,0.35416,73.335,-0.59509,0.065445,-0.80099,438,-0.7066,-0.51743,0.48269,335.22
    18177 
    18178 > hide #!13 models
    18179 
    18180 > view matrix models
    18181 > #12,-0.16467,0.91778,0.36134,13.273,-0.72636,0.13501,-0.67393,431.71,-0.6673,-0.37344,0.6444,272.6
    18182 
    18183 > ui mousemode right "translate selected models"
    18184 
    18185 > view matrix models
    18186 > #12,-0.16467,0.91778,0.36134,-12.003,-0.72636,0.13501,-0.67393,454.6,-0.6673,-0.37344,0.6444,277.82
    18187 
    18188 > fitmap #12 inMap #2
    18189 
    18190 Fit molecule R7_real_space_refined_018.pdb (#12) to map
    18191 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 4617 atoms 
    18192 average map value = 1.04, steps = 400 
    18193 shifted from previous position = 38.6 
    18194 rotated from previous position = 29.6 degrees 
    18195 atoms outside contour = 4170, contour level = 4.1986 
    18196  
    18197 Position of R7_real_space_refined_018.pdb (#12) relative to
    18198 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    18199 Matrix rotation and translation 
    18200 0.95328633 -0.25085292 0.16827947 58.35692875 
    18201 0.15933647 0.89087250 0.42539166 -73.75589940 
    18202 -0.25662629 -0.37870700 0.88922660 157.19416869 
    18203 Axis -0.80596466 0.42589179 0.41114128 
    18204 Axis point 0.00000000 356.64991123 251.04350874 
    18205 Rotation angle (degrees) 29.92344238 
    18206 Shift along axis -13.81664315 
    18207  
    18208 
    18209 > ui mousemode right "rotate selected models"
    18210 
    18211 > ui mousemode right "translate selected models"
    18212 
    18213 > ui mousemode right "rotate selected models"
    18214 
    18215 > view matrix models
    18216 > #12,0.17783,0.93424,0.30916,-48.816,-0.80909,0.31763,-0.49446,414.51,-0.56014,-0.1622,0.81236,204.6
    18217 
    18218 > ui mousemode right "translate selected models"
    18219 
    18220 > view matrix models
    18221 > #12,0.17783,0.93424,0.30916,-43.287,-0.80909,0.31763,-0.49446,434.15,-0.56014,-0.1622,0.81236,230.79
    18222 
    18223 > ui mousemode right "rotate selected models"
    18224 
    18225 > fitmap #12 inMap #2
    18226 
    18227 Fit molecule R7_real_space_refined_018.pdb (#12) to map
    18228 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 4617 atoms 
    18229 average map value = 5.857, steps = 216 
    18230 shifted from previous position = 8.58 
    18231 rotated from previous position = 36.2 degrees 
    18232 atoms outside contour = 1682, contour level = 4.1986 
    18233  
    18234 Position of R7_real_space_refined_018.pdb (#12) relative to
    18235 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    18236 Matrix rotation and translation 
    18237 0.99999926 -0.00075134 -0.00096113 0.31810592 
    18238 0.00075094 0.99999963 -0.00041652 -0.09178572 
    18239 0.00096144 0.00041580 0.99999945 -0.29195584 
    18240 Axis 0.32286003 -0.74577211 0.58273953 
    18241 Axis point 304.47251710 0.00000000 330.39320366 
    18242 Rotation angle (degrees) 0.07385297 
    18243 Shift along axis 0.00102071 
    18244  
    18245 
    18246 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18247 QFlags(NoModifier) 
    18248 
    18249 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18250 QFlags(ShiftModifier) 
    18251 
    18252 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18253 QFlags(ControlModifier) 
    18254 
    18255 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18256 QFlags(ShiftModifier|ControlModifier) 
    18257 
    18258 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18259 QFlags(AltModifier) 
    18260 
    18261 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18262 QFlags(ShiftModifier|AltModifier) 
    18263 
    18264 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18265 QFlags(ControlModifier|AltModifier) 
    18266 
    18267 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18268 QFlags(ShiftModifier|ControlModifier|AltModifier) 
    18269 
    18270 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18271 QFlags(MetaModifier) 
    18272 
    18273 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18274 QFlags(ShiftModifier|MetaModifier) 
    18275 
    18276 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18277 QFlags(ControlModifier|MetaModifier) 
    18278 
    18279 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18280 QFlags(ShiftModifier|ControlModifier|MetaModifier) 
    18281 
    18282 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18283 QFlags(AltModifier|MetaModifier) 
    18284 
    18285 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18286 QFlags(ShiftModifier|AltModifier|MetaModifier) 
    18287 
    18288 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18289 QFlags(ControlModifier|AltModifier|MetaModifier) 
    18290 
    18291 Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
    18292 QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier) 
    18293 
    18294 > combine #6 #12
    18295 
    18296 Remapping chain ID 'A' in R7_real_space_refined_018.pdb #12 to 'G' 
    18297 Remapping chain ID 'B' in R7_real_space_refined_018.pdb #12 to 'H' 
    18298 
    18299 > hide #!6 models
    18300 
    18301 > hide #!12 models
    18302 
    18303 > close #6
    18304 
    18305 > close #12
    18306 
    18307 > close #13
    18308 
    18309 > show #16 models
    18310 
    18311 > hide #16 models
    18312 
    18313 > show #10 models
    18314 
    18315 > hide #10 models
    18316 
    18317 > close #10
    18318 
    18319 > show #!11 models
    18320 
    18321 > hide #!11 models
    18322 
    18323 > show #!11 models
    18324 
    18325 > close #11
    18326 
    18327 > show #!5 models
    18328 
    18329 > hide #!5 models
    18330 
    18331 > close #5
    18332 
    18333 > show #!4 models
    18334 
    18335 > hide #!14 models
    18336 
    18337 > show #!14 models
    18338 
    18339 > close #4
    18340 
    18341 > show #!3 models
    18342 
    18343 > hide #!3 models
    18344 
    18345 > close #3
    18346 
    18347 > show #16 models
    18348 
    18349 > hide #16 models
    18350 
    18351 > show #!7 models
    18352 
    18353 > hide #!7 models
    18354 
    18355 > close #7
    18356 
    18357 > show #8 models
    18358 
    18359 Drag select of 88 residues, 169 shapes 
    18360 
    18361 > ui mousemode right "translate selected models"
    18362 
    18363 > view matrix models #8,1,0,0,248.7,0,1,0,330.53,0,0,1,114.32
    18364 
    18365 > view matrix models #8,1,0,0,276.63,0,1,0,201.86,0,0,1,227.02
    18366 
    18367 > view matrix models #8,1,0,0,323.24,0,1,0,165.12,0,0,1,245.82
    18368 
    18369 > ui mousemode right "rotate selected models"
    18370 
    18371 > view matrix models
    18372 > #8,-0.32423,0.92269,0.20862,333.42,0.78558,0.38548,-0.48402,158.87,-0.52702,0.0069542,-0.84983,248.48
    18373 
    18374 > view matrix models
    18375 > #8,-0.81458,-0.084499,0.57386,337.03,-0.037478,0.99493,0.093301,165.44,-0.57883,0.054494,-0.81362,248.9
    18376 
    18377 > view matrix models
    18378 > #8,0.094461,-0.34148,0.93513,330.51,0.99156,-0.05157,-0.11899,157.43,0.088858,0.93847,0.33372,244.98
    18379 
    18380 > view matrix models
    18381 > #8,0.55534,-0.58844,0.58766,326.84,0.55218,-0.26749,-0.78965,160.16,0.62185,0.76301,0.17637,240.93
    18382 
    18383 > select up
    18384 
    18385 12448 atoms, 13961 bonds, 580 residues, 1 model selected 
    18386 
    18387 > hide sel target a
    18388 
    18389 > select clear
    18390 
    18391 > select #8/A:281
    18392 
    18393 22 atoms, 24 bonds, 1 residue, 1 model selected 
    18394 
    18395 > select add #8/A:280
    18396 
    18397 42 atoms, 45 bonds, 2 residues, 1 model selected 
    18398 
    18399 > select add #8/A:279
    18400 
    18401 62 atoms, 66 bonds, 3 residues, 1 model selected 
    18402 
    18403 > select add #8/A:224
    18404 
    18405 82 atoms, 87 bonds, 4 residues, 1 model selected 
    18406 
    18407 > select add #8/A:225
    18408 
    18409 105 atoms, 112 bonds, 5 residues, 1 model selected 
    18410 
    18411 > select add #8/A:226
    18412 
    18413 125 atoms, 133 bonds, 6 residues, 1 model selected 
    18414 
    18415 > select add #8/A:227
    18416 
    18417 145 atoms, 154 bonds, 7 residues, 1 model selected 
    18418 
    18419 > select add #8/A:228
    18420 
    18421 165 atoms, 175 bonds, 8 residues, 1 model selected 
    18422 
    18423 > select add #8/A:229
    18424 
    18425 185 atoms, 196 bonds, 9 residues, 1 model selected 
    18426 
    18427 > select add #8/A:230
    18428 
    18429 207 atoms, 220 bonds, 10 residues, 1 model selected 
    18430 
    18431 > select add #8/A:231
    18432 
    18433 230 atoms, 245 bonds, 11 residues, 1 model selected 
    18434 
    18435 > select add #8/A:232
    18436 
    18437 250 atoms, 266 bonds, 12 residues, 1 model selected 
    18438 
    18439 > select add #8/A:233
    18440 
    18441 273 atoms, 291 bonds, 13 residues, 1 model selected 
    18442 
    18443 > select add #8/A:234
    18444 
    18445 296 atoms, 316 bonds, 14 residues, 1 model selected 
    18446 
    18447 > select add #8/A:235
    18448 
    18449 318 atoms, 340 bonds, 15 residues, 1 model selected 
    18450 
    18451 > select add #8/A:236
    18452 
    18453 341 atoms, 365 bonds, 16 residues, 1 model selected 
    18454 
    18455 > select add #8/A:237
    18456 
    18457 363 atoms, 389 bonds, 17 residues, 1 model selected 
    18458 
    18459 > select add #8/A:238
    18460 
    18461 385 atoms, 413 bonds, 18 residues, 1 model selected 
    18462 
    18463 > select add #8/A:239
    18464 
    18465 405 atoms, 434 bonds, 19 residues, 1 model selected 
    18466 
    18467 > select add #8/A:240
    18468 
    18469 427 atoms, 458 bonds, 20 residues, 1 model selected 
    18470 
    18471 > select add #8/A:241
    18472 
    18473 449 atoms, 482 bonds, 21 residues, 1 model selected 
    18474 
    18475 > select add #8/A:242
    18476 
    18477 469 atoms, 503 bonds, 22 residues, 1 model selected 
    18478 
    18479 > select add #8/A:243
    18480 
    18481 489 atoms, 524 bonds, 23 residues, 1 model selected 
    18482 
    18483 > select add #8/A:244
    18484 
    18485 509 atoms, 545 bonds, 24 residues, 1 model selected 
    18486 
    18487 > show #!1 models
    18488 
    18489 > hide #!1 models
    18490 
    18491 > select add #8/A:245
    18492 
    18493 531 atoms, 569 bonds, 25 residues, 1 model selected 
    18494 
    18495 > select add #8/A:246
    18496 
    18497 553 atoms, 593 bonds, 26 residues, 1 model selected 
    18498 
    18499 > select add #8/A:247
    18500 
    18501 576 atoms, 618 bonds, 27 residues, 1 model selected 
    18502 
    18503 > select add #8/A:248
    18504 
    18505 596 atoms, 639 bonds, 28 residues, 1 model selected 
    18506 
    18507 > select add #8/A:249
    18508 
    18509 616 atoms, 660 bonds, 29 residues, 1 model selected 
    18510 
    18511 > select add #8/A:250
    18512 
    18513 638 atoms, 684 bonds, 30 residues, 1 model selected 
    18514 
    18515 > select add #8/A:251
    18516 
    18517 661 atoms, 709 bonds, 31 residues, 1 model selected 
    18518 
    18519 > select add #8/A:252
    18520 
    18521 684 atoms, 734 bonds, 32 residues, 1 model selected 
    18522 
    18523 > select add #8/A:253
    18524 
    18525 704 atoms, 755 bonds, 33 residues, 1 model selected 
    18526 
    18527 > select add #8/A:278
    18528 
    18529 724 atoms, 776 bonds, 34 residues, 1 model selected 
    18530 
    18531 > select add #8/A:277
    18532 
    18533 744 atoms, 797 bonds, 35 residues, 1 model selected 
    18534 
    18535 > select add #8/A:276
    18536 
    18537 766 atoms, 821 bonds, 36 residues, 1 model selected 
    18538 
    18539 > select add #8/A:275
    18540 
    18541 789 atoms, 846 bonds, 37 residues, 1 model selected 
    18542 
    18543 > select add #8/A:274
    18544 
    18545 811 atoms, 870 bonds, 38 residues, 1 model selected 
    18546 
    18547 > select add #8/A:273
    18548 
    18549 831 atoms, 891 bonds, 39 residues, 1 model selected 
    18550 
    18551 > select add #8/A:272
    18552 
    18553 854 atoms, 916 bonds, 40 residues, 1 model selected 
    18554 
    18555 > select add #8/A:271
    18556 
    18557 877 atoms, 941 bonds, 41 residues, 1 model selected 
    18558 
    18559 > select add #8/A:270
    18560 
    18561 897 atoms, 962 bonds, 42 residues, 1 model selected 
    18562 
    18563 > select add #8/A:269
    18564 
    18565 917 atoms, 983 bonds, 43 residues, 1 model selected 
    18566 
    18567 > select add #8/A:254
    18568 
    18569 940 atoms, 1008 bonds, 44 residues, 1 model selected 
    18570 
    18571 > select add #8/A:255
    18572 
    18573 963 atoms, 1033 bonds, 45 residues, 1 model selected 
    18574 
    18575 > select add #8/A:256
    18576 
    18577 985 atoms, 1057 bonds, 46 residues, 1 model selected 
    18578 
    18579 > select add #8/A:257
    18580 
    18581 1007 atoms, 1081 bonds, 47 residues, 1 model selected 
    18582 
    18583 > select add #8/A:258
    18584 
    18585 1030 atoms, 1106 bonds, 48 residues, 1 model selected 
    18586 
    18587 > select add #8/A:259
    18588 
    18589 1050 atoms, 1127 bonds, 49 residues, 1 model selected 
    18590 
    18591 > select add #8/A:260
    18592 
    18593 1073 atoms, 1152 bonds, 50 residues, 1 model selected 
    18594 
    18595 > select add #8/A:261
    18596 
    18597 1093 atoms, 1173 bonds, 51 residues, 1 model selected 
    18598 
    18599 > select add #8/A:262
    18600 
    18601 1116 atoms, 1198 bonds, 52 residues, 1 model selected 
    18602 
    18603 > select add #8/A:263
    18604 
    18605 1138 atoms, 1222 bonds, 53 residues, 1 model selected 
    18606 
    18607 > select add #8/A:264
    18608 
    18609 1161 atoms, 1247 bonds, 54 residues, 1 model selected 
    18610 
    18611 > select add #8/A:265
    18612 
    18613 1183 atoms, 1271 bonds, 55 residues, 1 model selected 
    18614 
    18615 > select add #8/A:266
    18616 
    18617 1205 atoms, 1295 bonds, 56 residues, 1 model selected 
    18618 
    18619 > select add #8/A:267
    18620 
    18621 1228 atoms, 1320 bonds, 57 residues, 1 model selected 
    18622 
    18623 > select add #8/A:268
    18624 
    18625 1248 atoms, 1341 bonds, 58 residues, 1 model selected 
    18626 
    18627 > select ~sel & ##selected
    18628 
    18629 11200 atoms, 12563 bonds, 522 residues, 1 model selected 
    18630 
    18631 > delete atoms sel
    18632 
    18633 > delete bonds sel
    18634 
    18635 > show #!1 models
    18636 
    18637 > select add #14/A:286
    18638 
    18639 22 atoms, 24 bonds, 1 residue, 1 model selected 
    18640 
    18641 > select add #14/A:285
    18642 
    18643 44 atoms, 48 bonds, 2 residues, 1 model selected 
    18644 
    18645 > select add #14/A:284
    18646 
    18647 66 atoms, 72 bonds, 3 residues, 1 model selected 
    18648 
    18649 > select add #14/A:283
    18650 
    18651 88 atoms, 96 bonds, 4 residues, 1 model selected 
    18652 
    18653 > select add #14/A:282
    18654 
    18655 111 atoms, 121 bonds, 5 residues, 1 model selected 
    18656 
    18657 > ui mousemode right "translate selected models"
    18658 
    18659 > view matrix models
    18660 > #14,-0.24289,0.96982,0.02118,80.359,-0.53737,-0.11634,-0.83528,520.4,-0.80761,-0.21426,0.54941,330.21
    18661 
    18662 > ui mousemode right "translate selected atoms"
    18663 
    18664 > fitmap #14 inMap #1
    18665 
    18666 Fit molecule combination (#14) to map
    18667 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 7197 atoms 
    18668 average map value = 3.773, steps = 152 
    18669 shifted from previous position = 7.71 
    18670 rotated from previous position = 18.1 degrees 
    18671 atoms outside contour = 3521, contour level = 4.3314 
    18672  
    18673 Position of combination (#14) relative to
    18674 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    18675 Matrix rotation and translation 
    18676 -0.49091870 0.86159345 0.12905638 134.27648360 
    18677 -0.59615186 -0.22419886 -0.77093309 539.08566867 
    18678 -0.63529661 -0.45540267 0.62370396 322.83968918 
    18679 Axis 0.18826932 0.45607083 -0.86980116 
    18680 Axis point 271.45260187 311.76846103 0.00000000 
    18681 Rotation angle (degrees) 123.07297734 
    18682 Shift along axis -9.66494613 
    18683  
    18684 
    18685 > select subtract #14/A:286
    18686 
    18687 89 atoms, 97 bonds, 4 residues, 1 model selected 
    18688 
    18689 > select subtract #14/A:285
    18690 
    18691 67 atoms, 73 bonds, 3 residues, 1 model selected 
    18692 
    18693 > select subtract #14/A:283
    18694 
    18695 45 atoms, 49 bonds, 2 residues, 1 model selected 
    18696 
    18697 > select subtract #14/A:284
    18698 
    18699 23 atoms, 25 bonds, 1 residue, 1 model selected 
    18700 
    18701 > select add #14/A:284
    18702 
    18703 45 atoms, 49 bonds, 2 residues, 1 model selected 
    18704 
    18705 > select add #14/A:283
    18706 
    18707 67 atoms, 73 bonds, 3 residues, 1 model selected 
    18708 
    18709 > select clear
    18710 
    18711 > select add #14/A:283
    18712 
    18713 22 atoms, 24 bonds, 1 residue, 1 model selected 
    18714 
    18715 > select add #14/A:282
    18716 
    18717 45 atoms, 49 bonds, 2 residues, 1 model selected 
    18718 
    18719 > select add #14/A:286
    18720 
    18721 67 atoms, 73 bonds, 3 residues, 1 model selected 
    18722 
    18723 > select clear
    18724 
    18725 > select #8/A:226
    18726 
    18727 20 atoms, 21 bonds, 1 residue, 1 model selected 
    18728 
    18729 > ui mousemode right "translate selected models"
    18730 
    18731 > view matrix models
    18732 > #8,0.55534,-0.58844,0.58766,255.08,0.55218,-0.26749,-0.78965,253.42,0.62185,0.76301,0.17637,238.83
    18733 
    18734 > ui mousemode right "rotate selected models"
    18735 
    18736 > view matrix models
    18737 > #8,0.56491,-0.58098,0.58595,254.66,0.56439,-0.24597,-0.78801,252.22,0.60195,0.77586,0.18895,238.16
    18738 
    18739 > ui mousemode right "translate selected models"
    18740 
    18741 > view matrix models
    18742 > #8,0.56491,-0.58098,0.58595,260.96,0.56439,-0.24597,-0.78801,244.82,0.60195,0.77586,0.18895,250.23
    18743 
    18744 > hide #!1 models
    18745 
    18746 > select add #8/A:224
    18747 
    18748 40 atoms, 42 bonds, 2 residues, 1 model selected 
    18749 
    18750 > select add #8/A:225
    18751 
    18752 63 atoms, 67 bonds, 3 residues, 1 model selected 
    18753 
    18754 > select add #8/A:227
    18755 
    18756 83 atoms, 88 bonds, 4 residues, 1 model selected 
    18757 
    18758 > select add #8/A:228
    18759 
    18760 103 atoms, 109 bonds, 5 residues, 1 model selected 
    18761 
    18762 > select add #8/A:229
    18763 
    18764 123 atoms, 130 bonds, 6 residues, 1 model selected 
    18765 
    18766 > select add #8/A:230
    18767 
    18768 145 atoms, 154 bonds, 7 residues, 1 model selected 
    18769 
    18770 > select add #8/A:231
    18771 
    18772 168 atoms, 179 bonds, 8 residues, 1 model selected 
    18773 
    18774 > select add #8/A:232
    18775 
    18776 188 atoms, 200 bonds, 9 residues, 1 model selected 
    18777 
    18778 > select add #8/A:233
    18779 
    18780 211 atoms, 225 bonds, 10 residues, 1 model selected 
    18781 
    18782 > select add #8/A:234
    18783 
    18784 234 atoms, 250 bonds, 11 residues, 1 model selected 
    18785 
    18786 > select add #8/A:235
    18787 
    18788 256 atoms, 274 bonds, 12 residues, 1 model selected 
    18789 
    18790 > select add #8/A:236
    18791 
    18792 279 atoms, 299 bonds, 13 residues, 1 model selected 
    18793 
    18794 > select add #8/A:237
    18795 
    18796 301 atoms, 323 bonds, 14 residues, 1 model selected 
    18797 
    18798 > select add #8/A:238
    18799 
    18800 323 atoms, 347 bonds, 15 residues, 1 model selected 
    18801 
    18802 > select add #8/A:239
    18803 
    18804 343 atoms, 368 bonds, 16 residues, 1 model selected 
    18805 
    18806 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R10.pdb models #8
    18807 > selectedOnly true relModel #8
    18808 
    18809 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R10.pdb
    18810 
    18811 Chain information for R10.pdb #3 
    18812 --- 
    18813 Chain | Description 
    18814 A | No description available 
    18815  
    18816 
    18817 > delete atoms sel
    18818 
    18819 > delete bonds sel
    18820 
    18821 Drag select of 16 residues, 48 shapes 
    18822 
    18823 > view matrix models #3,1,0,0,43.787,0,1,0,60.274,0,0,1,371.8
    18824 
    18825 > show #!1 models
    18826 
    18827 > show #!2 models
    18828 
    18829 > view matrix models #3,1,0,0,34.915,0,1,0,70.493,0,0,1,348.53
    18830 
    18831 > ui mousemode right "rotate selected models"
    18832 
    18833 > ui mousemode right "translate selected models"
    18834 
    18835 > view matrix models #3,1,0,0,79.924,0,1,0,71.155,0,0,1,374.99
    18836 
    18837 > view matrix models #3,1,0,0,133.59,0,1,0,72.403,0,0,1,406.94
    18838 
    18839 > view matrix models #3,1,0,0,222.44,0,1,0,41.156,0,0,1,360.28
    18840 
    18841 > view matrix models #3,1,0,0,155.12,0,1,0,74.668,0,0,1,296.63
    18842 
    18843 > view matrix models #3,1,0,0,216.83,0,1,0,92.336,0,0,1,297.89
    18844 
    18845 > view matrix models #3,1,0,0,199.99,0,1,0,141.46,0,0,1,298.8
    18846 
    18847 > view matrix models #3,1,0,0,209.74,0,1,0,141.15,0,0,1,299.06
    18848 
    18849 > ui mousemode right "rotate selected models"
    18850 
    18851 > view matrix models
    18852 > #3,0.76301,-0.56591,-0.31234,243.89,0.38276,0.78495,-0.48718,152.19,0.52087,0.25217,0.81554,282.02
    18853 
    18854 > ui mousemode right "translate selected models"
    18855 
    18856 > view matrix models
    18857 > #3,0.76301,-0.56591,-0.31234,246.29,0.38276,0.78495,-0.48718,158.05,0.52087,0.25217,0.81554,300.79
    18858 
    18859 Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
    18860 got 3 atomic models, 2 maps. 
    18861 
    18862 > hide #!2 models
    18863 
    18864 > fitmap #3 inMap #1
    18865 
    18866 Fit molecule R10.pdb (#3) to map
    18867 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 343 atoms 
    18868 average map value = 4.902, steps = 212 
    18869 shifted from previous position = 8.52 
    18870 rotated from previous position = 104 degrees 
    18871 atoms outside contour = 97, contour level = 4.3314 
    18872  
    18873 Position of R10.pdb (#3) relative to
    18874 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    18875 Matrix rotation and translation 
    18876 -0.37225400 -0.58644929 0.71937765 247.39634593 
    18877 0.92448863 -0.16569062 0.34331820 253.75795722 
    18878 -0.08214458 0.79285803 0.60384469 255.03587156 
    18879 Axis 0.25419820 0.45323128 0.85437971 
    18880 Axis point 59.52593126 111.00867808 0.00000000 
    18881 Rotation angle (degrees) 117.84297305 
    18882 Shift along axis 395.79622310 
    18883  
    18884 
    18885 > select #8/A:267
    18886 
    18887 23 atoms, 25 bonds, 1 residue, 1 model selected 
    18888 
    18889 > ui mousemode right "rotate selected models"
    18890 
    18891 > view matrix models
    18892 > #8,-0.27205,-0.5024,0.82072,255,0.55794,-0.77724,-0.29084,293.93,0.78402,0.37879,0.49176,286.64
    18893 
    18894 > view matrix models
    18895 > #8,-0.66065,-0.58339,0.47244,242.51,0.41314,-0.80801,-0.42003,289.33,0.62678,-0.082313,0.77484,322.08
    18896 
    18897 > view matrix models
    18898 > #8,-0.1342,-0.99026,-0.037078,254.07,0.68188,-0.065126,-0.72856,237.77,0.71905,-0.12305,0.68398,322.26
    18899 
    18900 > view matrix models
    18901 > #8,0.26585,-0.90191,0.34041,267.32,0.89835,0.1037,-0.42686,241.38,0.34969,0.41929,0.8378,291.7
    18902 
    18903 > view matrix models
    18904 > #8,-0.1169,-0.98545,0.12338,259.82,0.86683,-0.16187,-0.47159,254.95,0.4847,0.051826,0.87314,316.11
    18905 
    18906 > fitmap #8 inMap #1
    18907 
    18908 Fit molecule fold_r_efa_model_0.cif (#8) to map
    18909 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 905 atoms 
    18910 average map value = 3.162, steps = 188 
    18911 shifted from previous position = 12 
    18912 rotated from previous position = 12.5 degrees 
    18913 atoms outside contour = 567, contour level = 4.3314 
    18914  
    18915 Position of fold_r_efa_model_0.cif (#8) relative to
    18916 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    18917 Matrix rotation and translation 
    18918 -0.17957719 -0.98371791 -0.00714856 242.79993995 
    18919 0.93151157 -0.16770162 -0.32274194 257.98932332 
    18920 0.31628820 -0.06461605 0.94646001 322.19149109 
    18921 Axis 0.13173556 -0.16506722 0.97744491 
    18922 Axis point -28.99214806 240.82929557 0.00000000 
    18923 Rotation angle (degrees) 101.56090087 
    18924 Shift along axis 304.32423828 
    18925  
    18926 
    18927 > view matrix models
    18928 > #8,0.37851,-0.83186,-0.40588,226.01,0.76596,0.5277,-0.36721,213.67,0.51965,-0.1719,0.83691,326.9
    18929 
    18930 > view matrix models
    18931 > #8,-0.053845,-0.98068,-0.18804,237.54,0.95472,0.0046173,-0.29746,249.08,0.29258,-0.19555,0.93603,329.21
    18932 
    18933 > view matrix models
    18934 > #8,-0.53425,-0.51002,0.67413,235.59,0.78905,-0.58699,0.18123,299.18,0.30328,0.62875,0.71603,273.04
    18935 
    18936 > view matrix models
    18937 > #8,-0.28661,-0.83292,0.4734,250.15,0.91373,-0.3862,-0.12629,277.72,0.28802,0.39636,0.87175,292.13
    18938 
    18939 > view matrix models
    18940 > #8,0.32397,-0.9442,0.059448,248.85,0.90576,0.2914,-0.30771,231.33,0.27321,0.15353,0.94962,309.02
    18941 
    18942 > ui mousemode right "translate selected models"
    18943 
    18944 > view matrix models
    18945 > #8,0.32397,-0.9442,0.059448,244.23,0.90576,0.2914,-0.30771,236.85,0.27321,0.15353,0.94962,303.21
    18946 
    18947 > ui mousemode right "rotate selected models"
    18948 
    18949 > view matrix models
    18950 > #8,-0.044163,-0.91703,0.39636,250.53,0.90124,-0.20777,-0.38027,263.41,0.43107,0.34042,0.83564,289.98
    18951 
    18952 > view matrix models
    18953 > #8,-0.093448,-0.87872,0.4681,250.31,0.89802,-0.27741,-0.34148,268.86,0.42992,0.38845,0.81503,286.41
    18954 
    18955 > ui mousemode right "translate selected models"
    18956 
    18957 > view matrix models
    18958 > #8,-0.093448,-0.87872,0.4681,253.22,0.89802,-0.27741,-0.34148,266.06,0.42992,0.38845,0.81503,291.35
    18959 
    18960 > view matrix models
    18961 > #8,-0.093448,-0.87872,0.4681,252.7,0.89802,-0.27741,-0.34148,262.88,0.42992,0.38845,0.81503,289.67
    18962 
    18963 > ui mousemode right "rotate selected models"
    18964 
    18965 > view matrix models
    18966 > #8,-0.47705,-0.56778,0.67085,237.31,0.70947,-0.6993,-0.087351,294.6,0.51872,0.43428,0.73643,285.18
    18967 
    18968 > view matrix models
    18969 > #8,-0.75248,-0.17444,0.63509,209.72,0.44035,-0.85031,0.28819,313.91,0.48976,0.49652,0.71666,280.47
    18970 
    18971 > view matrix models
    18972 > #8,-0.77861,-0.25508,0.57332,211.89,0.47942,-0.83131,0.28122,313,0.40487,0.49382,0.76956,281.55
    18973 
    18974 > ui mousemode right "translate selected models"
    18975 
    18976 > view matrix models
    18977 > #8,-0.77861,-0.25508,0.57332,214,0.47942,-0.83131,0.28122,321.38,0.40487,0.49382,0.76956,280.52
    18978 
    18979 > view matrix models
    18980 > #8,-0.77861,-0.25508,0.57332,216.12,0.47942,-0.83131,0.28122,320.86,0.40487,0.49382,0.76956,282.3
    18981 
    18982 > ui mousemode right "rotate selected models"
    18983 
    18984 > view matrix models
    18985 > #8,-0.7988,-0.12481,0.5885,208.8,0.40369,-0.8365,0.37054,323.52,0.44604,0.53356,0.71858,278.6
    18986 
    18987 > view matrix models
    18988 > #8,-0.88438,0.2226,0.41028,180.96,-0.05392,-0.9218,0.38391,323.6,0.46365,0.3174,0.82722,295.42
    18989 
    18990 > view matrix models
    18991 > #8,-0.90003,-0.032803,0.43458,196.63,0.20756,-0.90908,0.36124,325.12,0.38322,0.41533,0.82501,288.65
    18992 
    18993 > ui mousemode right "translate selected models"
    18994 
    18995 > view matrix models
    18996 > #8,-0.90003,-0.032803,0.43458,199.49,0.20756,-0.90908,0.36124,325.71,0.38322,0.41533,0.82501,293.95
    18997 
    18998 > view matrix models
    18999 > #8,-0.90003,-0.032803,0.43458,199.09,0.20756,-0.90908,0.36124,327.58,0.38322,0.41533,0.82501,293.18
    19000 
    19001 > view matrix models
    19002 > #8,-0.90003,-0.032803,0.43458,199.77,0.20756,-0.90908,0.36124,327.18,0.38322,0.41533,0.82501,290.88
    19003 
    19004 > fitmap #8 inMap #1
    19005 
    19006 Fit molecule fold_r_efa_model_0.cif (#8) to map
    19007 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 905 atoms 
    19008 average map value = 2.58, steps = 76 
    19009 shifted from previous position = 3.98 
    19010 rotated from previous position = 6.91 degrees 
    19011 atoms outside contour = 624, contour level = 4.3314 
    19012  
    19013 Position of fold_r_efa_model_0.cif (#8) relative to
    19014 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    19015 Matrix rotation and translation 
    19016 -0.89625850 -0.04060624 0.44166936 201.90769458 
    19017 0.26173313 -0.85235276 0.45275881 328.12015979 
    19018 0.35807327 0.52138844 0.77455641 286.17576522 
    19019 Axis 0.21373058 0.26034008 0.94156374 
    19020 Axis point 58.84099395 129.50977676 0.00000000 
    19021 Rotation angle (degrees) 170.76107824 
    19022 Shift along axis 398.02940100 
    19023  
    19024 
    19025 > volume #1 level 3.217
    19026 
    19027 > select #3/A:226
    19028 
    19029 20 atoms, 21 bonds, 1 residue, 1 model selected 
    19030 
    19031 > view matrix models
    19032 > #3,-0.37225,-0.58645,0.71938,225.83,0.92449,-0.16569,0.34332,270.96,-0.082145,0.79286,0.60384,226.2
    19033 
    19034 > ui mousemode right "rotate selected models"
    19035 
    19036 > view matrix models
    19037 > #3,0.80866,-0.33238,0.48538,214.43,0.3396,0.93748,0.076184,177.24,-0.48035,0.10323,0.87098,278.81
    19038 
    19039 > view matrix models
    19040 > #3,-0.46275,-0.88428,-0.062517,232.51,0.081092,-0.11245,0.99034,270.31,-0.88277,0.45321,0.12374,234.52
    19041 
    19042 > view matrix models
    19043 > #3,-0.51478,-0.15016,-0.84407,162.33,0.39352,-0.91609,-0.077021,313.94,-0.76168,-0.3718,0.53067,305.28
    19044 
    19045 > view matrix models
    19046 > #3,-0.28204,-1.415e-05,-0.9594,151.32,0.61696,-0.76581,-0.18136,303.03,-0.73472,-0.64306,0.216,320.06
    19047 
    19048 > view matrix models
    19049 > #3,0.44713,-0.11971,-0.88642,169.07,0.73633,-0.51339,0.44075,296.81,-0.50784,-0.84977,-0.14141,331.27
    19050 
    19051 > ui mousemode right "translate selected models"
    19052 
    19053 > view matrix models
    19054 > #3,0.44713,-0.11971,-0.88642,171.28,0.73633,-0.51339,0.44075,298.46,-0.50784,-0.84977,-0.14141,311.69
    19055 
    19056 > view matrix models
    19057 > #3,0.44713,-0.11971,-0.88642,182.16,0.73633,-0.51339,0.44075,308.24,-0.50784,-0.84977,-0.14141,323.61
    19058 
    19059 > view matrix models
    19060 > #3,0.44713,-0.11971,-0.88642,186.52,0.73633,-0.51339,0.44075,307.39,-0.50784,-0.84977,-0.14141,312.59
    19061 
    19062 > view matrix models
    19063 > #3,0.44713,-0.11971,-0.88642,186.25,0.73633,-0.51339,0.44075,307.82,-0.50784,-0.84977,-0.14141,310.19
    19064 
    19065 > ui mousemode right "rotate selected models"
    19066 
    19067 > view matrix models
    19068 > #3,0.28945,0.58265,-0.75943,134.32,0.92429,0.036082,0.37997,267.39,0.24879,-0.81192,-0.5281,308.02
    19069 
    19070 > view matrix models
    19071 > #3,0.12422,0.64341,-0.75538,128.14,0.94894,0.14544,0.27994,257.6,0.28998,-0.75158,-0.59249,302.73
    19072 
    19073 > ui mousemode right "translate selected models"
    19074 
    19075 > view matrix models
    19076 > #3,0.12422,0.64341,-0.75538,131.39,0.94894,0.14544,0.27994,256.78,0.28998,-0.75158,-0.59249,304.86
    19077 
    19078 > fitmap #3 inMap #1
    19079 
    19080 Fit molecule R10.pdb (#3) to map
    19081 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 343 atoms 
    19082 average map value = 4.662, steps = 164 
    19083 shifted from previous position = 4.08 
    19084 rotated from previous position = 39.6 degrees 
    19085 atoms outside contour = 57, contour level = 3.2169 
    19086  
    19087 Position of R10.pdb (#3) relative to
    19088 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    19089 Matrix rotation and translation 
    19090 0.27331747 0.80793578 -0.52205108 124.92829142 
    19091 0.93004064 -0.36052494 -0.07103643 287.21089444 
    19092 -0.24560530 -0.46611323 -0.84995087 276.69167362 
    19093 Axis -0.79426657 -0.55576951 0.24548090 
    19094 Axis point -0.00000000 125.63069342 143.24837288 
    19095 Rotation angle (degrees) 165.59908113 
    19096 Shift along axis -190.92690244 
    19097  
    19098 
    19099 > view matrix models
    19100 > #3,0.27332,0.80794,-0.52205,124.91,0.93004,-0.36052,-0.071036,287.24,-0.24561,-0.46611,-0.84995,276.78
    19101 
    19102 > view matrix models
    19103 > #3,0.27332,0.80794,-0.52205,145.41,0.93004,-0.36052,-0.071036,273.4,-0.24561,-0.46611,-0.84995,312.03
    19104 
    19105 > ui mousemode right "rotate selected models"
    19106 
    19107 > view matrix models
    19108 > #3,-0.64291,0.18872,-0.74233,178.44,-0.32205,-0.94594,0.038441,306.54,-0.69494,0.26378,0.66893,280.75
    19109 
    19110 > view matrix models
    19111 > #3,-0.3731,-0.72826,0.57483,274.3,0.9229,-0.35485,0.14945,276.87,0.095137,0.58627,0.80451,267.14
    19112 
    19113 > view matrix models
    19114 > #3,-0.33674,-0.90907,0.24535,282.09,0.90101,-0.38677,-0.19645,272.6,0.27348,0.15491,0.94932,303.93
    19115 
    19116 > ui mousemode right "translate selected models"
    19117 
    19118 > view matrix models
    19119 > #3,-0.33674,-0.90907,0.24535,279.47,0.90101,-0.38677,-0.19645,276.77,0.27348,0.15491,0.94932,313.86
    19120 
    19121 > fitmap #3 inMap #1
    19122 
    19123 Fit molecule R10.pdb (#3) to map
    19124 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 343 atoms 
    19125 average map value = 4.247, steps = 280 
    19126 shifted from previous position = 19 
    19127 rotated from previous position = 96.9 degrees 
    19128 atoms outside contour = 91, contour level = 3.2169 
    19129  
    19130 Position of R10.pdb (#3) relative to
    19131 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    19132 Matrix rotation and translation 
    19133 0.32918070 -0.30515323 -0.89360034 206.72351645 
    19134 0.63820019 0.76937433 -0.02763414 179.40477890 
    19135 0.69594581 -0.56119928 0.44801203 368.17607122 
    19136 Axis -0.27733993 -0.82622453 0.49034231 
    19137 Axis point -231.50195556 -0.00000000 397.35655380 
    19138 Rotation angle (degrees) 74.14024971 
    19139 Shift along axis -25.02900783 
    19140  
    19141 
    19142 > view matrix models
    19143 > #3,0.32918,-0.30515,-0.8936,206.99,0.6382,0.76937,-0.027634,174.82,0.69595,-0.5612,0.44801,359.89
    19144 
    19145 > ui mousemode right "rotate selected models"
    19146 
    19147 > view matrix models
    19148 > #3,-0.4007,-0.77345,0.49114,260.58,0.91425,-0.37259,0.15913,267.03,0.059917,0.51279,0.85642,280.22
    19149 
    19150 > view matrix models
    19151 > #3,-0.83338,-0.059368,0.54951,203.71,0.3404,-0.83842,0.42566,300.97,0.43545,0.54179,0.71893,279.33
    19152 
    19153 > view matrix models
    19154 > #3,-0.7403,-0.59725,0.30862,240.54,0.64458,-0.761,0.073472,291.77,0.19098,0.25332,0.94834,302.69
    19155 
    19156 > view matrix models
    19157 > #3,-0.75638,-0.60234,-0.25511,230.37,0.26797,-0.64109,0.71916,290.82,-0.59673,0.4756,0.64631,272.38
    19158 
    19159 > view matrix models
    19160 > #3,-0.93991,0.30543,-0.15261,162.11,-0.30101,-0.53031,0.79257,278.03,0.16114,0.79087,0.59038,255.39
    19161 
    19162 > view matrix models
    19163 > #3,-0.92081,0.05007,0.38679,191.5,0.33345,-0.41335,0.84732,276.73,0.2023,0.9092,0.36392,242.72
    19164 
    19165 > view matrix models
    19166 > #3,-0.82662,-0.45762,0.32754,229.48,0.55326,-0.55433,0.62179,285.38,-0.10298,0.6952,0.71141,262.11
    19167 
    19168 > fitmap #3 inMap #1
    19169 
    19170 Fit molecule R10.pdb (#3) to map
    19171 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 343 atoms 
    19172 average map value = 4.916, steps = 160 
    19173 shifted from previous position = 5.77 
    19174 rotated from previous position = 29.7 degrees 
    19175 atoms outside contour = 45, contour level = 3.2169 
    19176  
    19177 Position of R10.pdb (#3) relative to
    19178 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    19179 Matrix rotation and translation 
    19180 -0.75516252 -0.25383303 0.60439916 215.71265248 
    19181 0.65051879 -0.17630014 0.73874459 260.13151985 
    19182 -0.08096212 0.95104524 0.29825842 239.93545107 
    19183 Axis 0.18390531 0.59369380 0.78339422 
    19184 Axis point 72.94090039 68.64442247 0.00000000 
    19185 Rotation angle (degrees) 144.74608589 
    19186 Shift along axis 382.07321979 
    19187  
    19188 
    19189 > select #8/A:253
    19190 
    19191 20 atoms, 21 bonds, 1 residue, 1 model selected 
    19192 
    19193 > select #8/A:253
    19194 
    19195 20 atoms, 21 bonds, 1 residue, 1 model selected 
    19196 
    19197 > select #8/A:253
    19198 
    19199 20 atoms, 21 bonds, 1 residue, 1 model selected 
    19200 
    19201 > select #8/A:253
    19202 
    19203 20 atoms, 21 bonds, 1 residue, 1 model selected 
    19204 
    19205 > select #8/A:253
    19206 
    19207 20 atoms, 21 bonds, 1 residue, 1 model selected 
    19208 
    19209 > select clear
    19210 
    19211 > select #8/A:252
    19212 
    19213 23 atoms, 25 bonds, 1 residue, 1 model selected 
    19214 
    19215 > select add #8/A:278
    19216 
    19217 43 atoms, 46 bonds, 2 residues, 1 model selected 
    19218 
    19219 > select add #8/A:251
    19220 
    19221 66 atoms, 71 bonds, 3 residues, 1 model selected 
    19222 
    19223 > select add #8/A:250
    19224 
    19225 88 atoms, 95 bonds, 4 residues, 1 model selected 
    19226 
    19227 > select add #8/A:249
    19228 
    19229 108 atoms, 116 bonds, 5 residues, 1 model selected 
    19230 
    19231 > select add #8/A:248
    19232 
    19233 128 atoms, 137 bonds, 6 residues, 1 model selected 
    19234 
    19235 > select add #8/A:247
    19236 
    19237 151 atoms, 162 bonds, 7 residues, 1 model selected 
    19238 
    19239 > select add #8/A:246
    19240 
    19241 173 atoms, 186 bonds, 8 residues, 1 model selected 
    19242 
    19243 > select add #8/A:245
    19244 
    19245 195 atoms, 210 bonds, 9 residues, 1 model selected 
    19246 
    19247 > select add #8/A:244
    19248 
    19249 215 atoms, 231 bonds, 10 residues, 1 model selected 
    19250 
    19251 > select add #8/A:243
    19252 
    19253 235 atoms, 252 bonds, 11 residues, 1 model selected 
    19254 
    19255 > select add #8/A:242
    19256 
    19257 255 atoms, 273 bonds, 12 residues, 1 model selected 
    19258 
    19259 > select add #8/A:241
    19260 
    19261 277 atoms, 297 bonds, 13 residues, 1 model selected 
    19262 
    19263 > select add #8/A:240
    19264 
    19265 299 atoms, 321 bonds, 14 residues, 1 model selected 
    19266 
    19267 > select add #8/A:279
    19268 
    19269 319 atoms, 342 bonds, 15 residues, 1 model selected 
    19270 
    19271 > select add #8/A:280
    19272 
    19273 339 atoms, 363 bonds, 16 residues, 1 model selected 
    19274 
    19275 > select add #8/A:281
    19276 
    19277 361 atoms, 387 bonds, 17 residues, 1 model selected 
    19278 
    19279 > select add #8/A:277
    19280 
    19281 381 atoms, 408 bonds, 18 residues, 1 model selected 
    19282 
    19283 > select subtract #8/A:277
    19284 
    19285 361 atoms, 387 bonds, 17 residues, 1 model selected 
    19286 
    19287 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R11.pdb models #8
    19288 > selectedOnly true relModel #8
    19289 
    19290 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R11.pdb
    19291 
    19292 Chain information for R11.pdb #4 
    19293 --- 
    19294 Chain | Description 
    19295 A | No description available 
    19296  
    19297 
    19298 > delete atoms sel
    19299 
    19300 > delete bonds sel
    19301 
    19302 Drag select of 17 residues, 1 pseudobonds, 51 shapes 
    19303 
    19304 > ui mousemode right "translate selected models"
    19305 
    19306 > view matrix models #4,1,0,0,171.06,0,1,0,123.02,0,0,1,369.18
    19307 
    19308 > view matrix models #4,1,0,0,140.23,0,1,0,147.23,0,0,1,324.36
    19309 
    19310 > view matrix models #4,1,0,0,135.71,0,1,0,167.47,0,0,1,302.02
    19311 
    19312 > view matrix models #4,1,0,0,178,0,1,0,184.62,0,0,1,283.41
    19313 
    19314 > view matrix models #4,1,0,0,205.55,0,1,0,170.55,0,0,1,308.94
    19315 
    19316 > view matrix models #4,1,0,0,206,0,1,0,195.15,0,0,1,302.59
    19317 
    19318 > ui mousemode right "rotate selected models"
    19319 
    19320 > view matrix models
    19321 > #4,0.67665,-0.015784,-0.73614,169.95,-0.018819,0.99907,-0.038721,193.18,0.73607,0.040054,0.67572,301.91
    19322 
    19323 > view matrix models
    19324 > #4,0.98891,-0.13528,-0.061276,211.03,0.11084,0.94694,-0.30169,187.78,0.098837,0.29156,0.95143,286.2
    19325 
    19326 > view matrix models
    19327 > #4,0.05463,0.99835,-0.017433,128.97,-0.67206,0.023852,-0.74011,205.02,-0.73848,0.052148,0.67226,270.53
    19328 
    19329 > view matrix models
    19330 > #4,0.94515,0.22651,-0.23532,181.6,-0.30558,0.3588,-0.88198,187.87,-0.11534,0.90551,0.40834,224.01
    19331 
    19332 > view matrix models
    19333 > #4,0.98234,-0.12176,-0.14209,205.77,-0.082682,0.39875,-0.91333,188.86,0.16787,0.90894,0.38164,228.42
    19334 
    19335 > view matrix models
    19336 > #4,0.68516,-0.061895,-0.72576,171.98,-0.66905,0.34045,-0.66066,190.77,0.28798,0.93822,0.19185,221.27
    19337 
    19338 > view matrix models
    19339 > #4,0.6816,0.71067,0.17426,166.19,-0.41329,0.57043,-0.70979,181.18,-0.60383,0.41177,0.68252,252.71
    19340 
    19341 > view matrix models
    19342 > #4,0.95869,0.25119,0.1335,196.27,-0.12187,0.78675,-0.60512,179.47,-0.25703,0.56385,0.78486,255.75
    19343 
    19344 > fitmap #4 inMap #1
    19345 
    19346 Fit molecule R11.pdb (#4) to map
    19347 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 361 atoms 
    19348 average map value = 3.792, steps = 184 
    19349 shifted from previous position = 10.2 
    19350 rotated from previous position = 31.9 degrees 
    19351 atoms outside contour = 121, contour level = 3.2169 
    19352  
    19353 Position of R11.pdb (#4) relative to
    19354 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    19355 Matrix rotation and translation 
    19356 0.77573429 0.62677279 -0.07343147 170.58711351 
    19357 -0.60693468 0.70914376 -0.35881111 185.40717181 
    19358 -0.17281957 0.32291018 0.93051728 271.62433929 
    19359 Axis 0.48245324 0.07033683 -0.87309312 
    19360 Axis point 430.78798824 -227.18573397 0.00000000 
    19361 Rotation angle (degrees) 44.95210155 
    19362 Shift along axis -141.81208449 
    19363  
    19364 
    19365 > view matrix models
    19366 > #4,0.74895,0.65336,-0.11043,166.98,-0.64414,0.67878,-0.35261,186.58,-0.15543,0.33522,0.92923,271.25
    19367 
    19368 > ui mousemode right "translate selected models"
    19369 
    19370 > view matrix models
    19371 > #4,0.74895,0.65336,-0.11043,168.04,-0.64414,0.67878,-0.35261,185.18,-0.15543,0.33522,0.92923,279.15
    19372 
    19373 > fitmap #4 inMap #1
    19374 
    19375 Fit molecule R11.pdb (#4) to map
    19376 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 361 atoms 
    19377 average map value = 3.793, steps = 128 
    19378 shifted from previous position = 8.09 
    19379 rotated from previous position = 3.03 degrees 
    19380 atoms outside contour = 122, contour level = 3.2169 
    19381  
    19382 Position of R11.pdb (#4) relative to
    19383 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    19384 Matrix rotation and translation 
    19385 0.77543005 0.62720355 -0.07296531 170.58617857 
    19386 -0.60734832 0.70924530 -0.35790937 185.43122922 
    19387 -0.17273173 0.32184904 0.93090115 271.71720168 
    19388 Axis 0.48112591 0.07061363 -0.87380294 
    19389 Axis point 430.50650250 -226.96343630 0.00000000 
    19390 Rotation angle (degrees) 44.94475478 
    19391 Shift along axis -142.25988629 
    19392  
    19393 
    19394 > view matrix models
    19395 > #4,0.77543,0.6272,-0.072965,170.29,-0.60735,0.70925,-0.35791,182.35,-0.17273,0.32185,0.9309,279.94
    19396 
    19397 > select clear
    19398 
    19399 > select #4/A:246
    19400 
    19401 22 atoms, 24 bonds, 1 residue, 1 model selected 
    19402 
    19403 > view matrix models
    19404 > #4,0.77543,0.6272,-0.072965,170.29,-0.60735,0.70925,-0.35791,182.34,-0.17273,0.32185,0.9309,279.91
    19405 
    19406 > view matrix models
    19407 > #4,0.77543,0.6272,-0.072965,169.61,-0.60735,0.70925,-0.35791,180.2,-0.17273,0.32185,0.9309,281.49
    19408 
    19409 > ui mousemode right "rotate selected models"
    19410 
    19411 > view matrix models
    19412 > #4,-0.95726,-0.099899,-0.27143,166.08,-0.25079,-0.18082,0.951,291.7,-0.14408,0.97843,0.14804,212.74
    19413 
    19414 > view matrix models
    19415 > #4,-0.52018,0.63245,0.57395,169.41,0.26361,-0.52032,0.81227,315.36,0.81236,0.57382,0.10394,253.1
    19416 
    19417 > view matrix models
    19418 > #4,0.0032449,0.42027,0.90739,206.39,0.10918,-0.90212,0.41744,317.08,0.99402,0.097711,-0.04881,277.32
    19419 
    19420 > view matrix models
    19421 > #4,-0.67038,0.20673,0.71264,196.3,0.28782,-0.81277,0.50652,319.46,0.68392,0.54467,0.48537,267.82
    19422 
    19423 > view matrix models
    19424 > #4,-0.55381,0.63645,0.53687,167.04,0.05742,-0.61405,0.78718,315.27,0.83066,0.46677,0.30352,267.62
    19425 
    19426 > view matrix models
    19427 > #4,0.305,0.4152,0.85708,210.69,0.014622,-0.9019,0.4317,315.79,0.95224,-0.11914,-0.28115,278.83
    19428 
    19429 > view matrix models
    19430 > #4,0.30824,0.53661,0.78552,200.83,0.093742,-0.83883,0.53625,318.22,0.94668,-0.091658,-0.30886,275.97
    19431 
    19432 > view matrix models
    19433 > #4,0.11326,0.5617,0.81955,196.88,0.10382,-0.82703,0.55249,318.44,0.98813,0.022514,-0.15199,276.96
    19434 
    19435 > view matrix models
    19436 > #4,0.90475,0.024385,0.42524,227.32,0.10932,-0.97821,-0.17649,296.96,0.41167,0.20617,-0.88771,224.56
    19437 
    19438 > view matrix models
    19439 > #4,0.035253,0.49648,0.86733,200.57,0.59877,-0.70535,0.37942,314.62,0.80015,0.50595,-0.32214,238.73
    19440 
    19441 > view matrix models
    19442 > #4,-0.2972,-0.086377,0.9509,230.08,0.48874,-0.8693,0.073787,308.84,0.82025,0.48667,0.30057,266.07
    19443 
    19444 > view matrix models
    19445 > #4,-0.049287,-0.78331,0.61968,261.03,0.37433,-0.5897,-0.71564,257.96,0.92599,0.19669,0.32228,285.62
    19446 
    19447 > view matrix models
    19448 > #4,0.39196,-0.36505,0.84446,256.05,0.52004,-0.66927,-0.53069,273.22,0.7589,0.64716,-0.072486,240.15
    19449 
    19450 > view matrix models
    19451 > #4,0.76347,-0.29567,0.57419,248.72,0.22093,-0.71586,-0.66237,264.3,0.60688,0.63256,-0.48121,220.95
    19452 
    19453 > view matrix models
    19454 > #4,0.62583,0.71209,0.31821,178.38,0.76582,-0.48367,-0.42378,272.29,-0.14786,0.50891,-0.84803,197.13
    19455 
    19456 > view matrix models
    19457 > #4,0.74559,-0.15772,0.64747,243.63,0.33233,-0.75415,-0.5664,272.65,0.57762,0.63748,-0.50987,218.91
    19458 
    19459 > view matrix models
    19460 > #4,0.69867,0.48018,0.53036,201.5,0.62901,-0.059065,-0.77515,230.59,-0.34089,0.87518,-0.3433,193.51
    19461 
    19462 > view matrix models
    19463 > #4,0.8445,-0.50507,0.1781,245.79,0.17631,-0.051833,-0.98297,212.09,0.5057,0.86152,0.045275,227.84
    19464 
    19465 > view matrix models
    19466 > #4,0.5648,-0.75961,0.32248,260.04,0.20168,-0.25187,-0.94651,225.54,0.8002,0.59963,0.01094,247.36
    19467 
    19468 > view matrix models
    19469 > #4,0.55207,-0.53898,0.63618,260.35,0.49237,-0.40502,-0.77041,247.69,0.6729,0.73855,0.041779,238.09
    19470 
    19471 > view matrix models
    19472 > #4,0.31834,-0.73939,0.59326,264.86,0.52105,-0.38633,-0.76109,247.61,0.79194,0.55141,0.26227,260.34
    19473 
    19474 > view matrix models
    19475 > #4,0.066064,-0.86969,0.48915,262.62,0.5239,-0.38698,-0.7588,247.8,0.84921,0.30639,0.43007,282.49
    19476 
    19477 > view matrix models
    19478 > #4,-0.024812,-0.81188,0.5833,261.4,0.56239,-0.49373,-0.66328,258.68,0.8265,0.31159,0.46884,283.35
    19479 
    19480 > fitmap #4 inMap #1
    19481 
    19482 Fit molecule R11.pdb (#4) to map
    19483 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 361 atoms 
    19484 average map value = 3.595, steps = 120 
    19485 shifted from previous position = 2.38 
    19486 rotated from previous position = 43.1 degrees 
    19487 atoms outside contour = 135, contour level = 3.2169 
    19488  
    19489 Position of R11.pdb (#4) relative to
    19490 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    19491 Matrix rotation and translation 
    19492 0.48795136 -0.86403643 0.12387301 255.50564040 
    19493 0.18197453 -0.03809856 -0.98256489 210.93634359 
    19494 0.85369125 0.50198560 0.13864238 261.57928241 
    19495 Axis 0.75850414 -0.37288739 0.53444032 
    19496 Axis point 0.00000000 101.22190014 204.48913717 
    19497 Rotation angle (degrees) 101.87354836 
    19498 Shift along axis 254.94510046 
    19499  
    19500 
    19501 > show #9 models
    19502 
    19503 > hide #9 models
    19504 
    19505 > show #9 models
    19506 
    19507 > hide #9 models
    19508 
    19509 > show #!1 models
    19510 
    19511 > hide #!1 models
    19512 
    19513 > show #!2 models
    19514 
    19515 > select clear
    19516 
    19517 > select #14/A:292
    19518 
    19519 22 atoms, 24 bonds, 1 residue, 1 model selected 
    19520 
    19521 > fitmap #14 inMap #2
    19522 
    19523 Fit molecule combination (#14) to map
    19524 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 7197 atoms 
    19525 average map value = 5.834, steps = 164 
    19526 shifted from previous position = 7.85 
    19527 rotated from previous position = 18.1 degrees 
    19528 atoms outside contour = 2657, contour level = 4.1986 
    19529  
    19530 Position of combination (#14) relative to
    19531 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    19532 Matrix rotation and translation 
    19533 0.99999827 -0.00120444 -0.00142010 0.55228820 
    19534 0.00120289 0.99999868 -0.00109052 -0.02352920 
    19535 0.00142141 0.00108881 0.99999840 -0.53428451 
    19536 Axis 0.50506202 -0.65852497 0.55790431 
    19537 Axis point 374.89181466 0.00000000 389.74675539 
    19538 Rotation angle (degrees) 0.12361471 
    19539 Shift along axis -0.00364526 
    19540  
    19541 
    19542 > show #!1 models
    19543 
    19544 > select #2
    19545 
    19546 2 models selected 
    19547 
    19548 Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
    19549 got 4 atomic models, 2 maps. 
    19550 
    19551 > hide #3 models
    19552 
    19553 > hide #!4 models
    19554 
    19555 > hide #8 models
    19556 
    19557 > hide #!14 models
    19558 
    19559 > fitmap #2 inMap #1
    19560 
    19561 Fit map cryosparc_P104_J81_mono_3dot25_map_emready.mrc in map
    19562 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc using 49672 points 
    19563 correlation = 0.8947, correlation about mean = 0.1823, overlap = 1.633e+06 
    19564 steps = 144, shift = 7.63, angle = 17.1 degrees 
    19565  
    19566 Position of cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) relative to
    19567 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    19568 Matrix rotation and translation 
    19569 -0.47759429 0.87137073 0.11232427 132.33349948 
    19570 -0.60130020 -0.23096860 -0.76491279 540.46786996 
    19571 -0.64057923 -0.43285859 0.63426468 317.94477584 
    19572 Axis 0.19683414 0.44630399 -0.87296567 
    19573 Axis point 273.32095182 309.28022861 0.00000000 
    19574 Rotation angle (degrees) 122.48977629 
    19575 Shift along axis -10.29415761 
    19576  
    19577 
    19578 > show #3 models
    19579 
    19580 > show #!4 models
    19581 
    19582 > show #8 models
    19583 
    19584 > show #9 models
    19585 
    19586 > hide #9 models
    19587 
    19588 > show #!14 models
    19589 
    19590 > select clear
    19591 
    19592 > select #14/A:291
    19593 
    19594 22 atoms, 24 bonds, 1 residue, 1 model selected 
    19595 
    19596 Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
    19597 got 4 atomic models, 2 maps. 
    19598 
    19599 > hide #!1 models
    19600 
    19601 > fitmap #14 inMap #2
    19602 
    19603 Fit molecule combination (#14) to map
    19604 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 7197 atoms 
    19605 average map value = 5.834, steps = 160 
    19606 shifted from previous position = 7.54 
    19607 rotated from previous position = 17.1 degrees 
    19608 atoms outside contour = 2655, contour level = 4.1986 
    19609  
    19610 Position of combination (#14) relative to
    19611 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    19612 Matrix rotation and translation 
    19613 0.99999835 -0.00121205 -0.00135081 0.54654269 
    19614 0.00121063 0.99999872 -0.00105018 -0.02865544 
    19615 0.00135208 0.00104854 0.99999854 -0.50162697 
    19616 Axis 0.50055278 -0.64464915 0.57781864 
    19617 Axis point 372.38003937 0.00000000 403.33672698 
    19618 Rotation angle (degrees) 0.12011492 
    19619 Shift along axis 0.00219676 
    19620  
    19621 
    19622 > show #!1 models
    19623 
    19624 > show #9 models
    19625 
    19626 > hide #!2 models
    19627 
    19628 > hide #3 models
    19629 
    19630 > hide #!4 models
    19631 
    19632 > hide #8 models
    19633 
    19634 > hide #9 models
    19635 
    19636 > show #9 models
    19637 
    19638 > show #8 models
    19639 
    19640 > show #!4 models
    19641 
    19642 > show #3 models
    19643 
    19644 > hide #9 models
    19645 
    19646 > show #9 models
    19647 
    19648 > hide #9 models
    19649 
    19650 > hide #3 models
    19651 
    19652 > show #3 models
    19653 
    19654 > hide #!4 models
    19655 
    19656 > show #!4 models
    19657 
    19658 > hide #8 models
    19659 
    19660 > show #8 models
    19661 
    19662 > hide #!14 models
    19663 
    19664 > show #!14 models
    19665 
    19666 > combine #3 #4 #8 #14
    19667 
    19668 Remapping chain ID 'A' in R11.pdb #4 to 'B' 
    19669 Remapping chain ID 'A' in fold_r_efa_model_0.cif #8 to 'C' 
    19670 Remapping chain ID 'A' in combination #14 to 'I' 
    19671 Remapping chain ID 'B' in combination #14 to 'J' 
    19672 Remapping chain ID 'C' in combination #14 to 'K' 
    19673 
    19674 > hide #!14 models
    19675 
    19676 > hide #8 models
    19677 
    19678 > hide #!4 models
    19679 
    19680 > hide #3 models
    19681 
    19682 > hide #!5 models
    19683 
    19684 > show #!5 models
    19685 
    19686 > close #3#4
    19687 
    19688 > show #8 models
    19689 
    19690 > hide #!5 models
    19691 
    19692 > close #8
    19693 
    19694 > show #!14 models
    19695 
    19696 > show #!5 models
    19697 
    19698 > hide #!5 models
    19699 
    19700 > close #14
    19701 
    19702 > show #!5 models
    19703 
    19704 > hide #!5 models
    19705 
    19706 > show #9 models
    19707 
    19708 > hide #!1 models
    19709 
    19710 > select #9/A:519
    19711 
    19712 23 atoms, 25 bonds, 1 residue, 1 model selected 
    19713 
    19714 > select add #9/A:518
    19715 
    19716 43 atoms, 46 bonds, 2 residues, 1 model selected 
    19717 
    19718 > select add #9/A:517
    19719 
    19720 66 atoms, 71 bonds, 3 residues, 1 model selected 
    19721 
    19722 > select add #9/A:516
    19723 
    19724 86 atoms, 92 bonds, 4 residues, 1 model selected 
    19725 
    19726 > select up
    19727 
    19728 12448 atoms, 13961 bonds, 580 residues, 1 model selected 
    19729 
    19730 > cartoon hide sel
    19731 
    19732 > cartoon sel
    19733 
    19734 > hide sel target a
    19735 
    19736 > select clear
    19737 
    19738 > select #9/A:519
    19739 
    19740 23 atoms, 25 bonds, 1 residue, 1 model selected 
    19741 
    19742 > select add #9/A:518
    19743 
    19744 43 atoms, 46 bonds, 2 residues, 1 model selected 
    19745 
    19746 > select add #9/A:517
    19747 
    19748 66 atoms, 71 bonds, 3 residues, 1 model selected 
    19749 
    19750 > select add #9/A:516
    19751 
    19752 86 atoms, 92 bonds, 4 residues, 1 model selected 
    19753 
    19754 > select add #9/A:515
    19755 
    19756 108 atoms, 116 bonds, 5 residues, 1 model selected 
    19757 
    19758 > select add #9/A:514
    19759 
    19760 128 atoms, 137 bonds, 6 residues, 1 model selected 
    19761 
    19762 > select add #9/A:513
    19763 
    19764 151 atoms, 162 bonds, 7 residues, 1 model selected 
    19765 
    19766 > select add #9/A:512
    19767 
    19768 174 atoms, 187 bonds, 8 residues, 1 model selected 
    19769 
    19770 > select add #9/A:432
    19771 
    19772 197 atoms, 212 bonds, 9 residues, 1 model selected 
    19773 
    19774 > select add #9/A:433
    19775 
    19776 217 atoms, 233 bonds, 10 residues, 1 model selected 
    19777 
    19778 > select add #9/A:434
    19779 
    19780 237 atoms, 254 bonds, 11 residues, 1 model selected 
    19781 
    19782 > select add #9/A:435
    19783 
    19784 259 atoms, 278 bonds, 12 residues, 1 model selected 
    19785 
    19786 > select add #9/A:436
    19787 
    19788 279 atoms, 299 bonds, 13 residues, 1 model selected 
    19789 
    19790 > select add #9/A:437
    19791 
    19792 299 atoms, 320 bonds, 14 residues, 1 model selected 
    19793 
    19794 > select add #9/A:438
    19795 
    19796 321 atoms, 344 bonds, 15 residues, 1 model selected 
    19797 
    19798 > select add #9/A:439
    19799 
    19800 344 atoms, 369 bonds, 16 residues, 1 model selected 
    19801 
    19802 > select add #9/A:440
    19803 
    19804 364 atoms, 390 bonds, 17 residues, 1 model selected 
    19805 
    19806 > select add #9/A:441
    19807 
    19808 384 atoms, 411 bonds, 18 residues, 1 model selected 
    19809 
    19810 > select add #9/A:442
    19811 
    19812 406 atoms, 435 bonds, 19 residues, 1 model selected 
    19813 
    19814 > select add #9/A:443
    19815 
    19816 429 atoms, 460 bonds, 20 residues, 1 model selected 
    19817 
    19818 > select add #9/A:444
    19819 
    19820 449 atoms, 481 bonds, 21 residues, 1 model selected 
    19821 
    19822 > select add #9/A:445
    19823 
    19824 471 atoms, 505 bonds, 22 residues, 1 model selected 
    19825 
    19826 > select add #9/A:446
    19827 
    19828 494 atoms, 530 bonds, 23 residues, 1 model selected 
    19829 
    19830 > select add #9/A:447
    19831 
    19832 516 atoms, 554 bonds, 24 residues, 1 model selected 
    19833 
    19834 > select add #9/A:448
    19835 
    19836 539 atoms, 579 bonds, 25 residues, 1 model selected 
    19837 
    19838 > select add #9/A:449
    19839 
    19840 559 atoms, 600 bonds, 26 residues, 1 model selected 
    19841 
    19842 > select add #9/A:450
    19843 
    19844 579 atoms, 621 bonds, 27 residues, 1 model selected 
    19845 
    19846 > select add #9/A:451
    19847 
    19848 601 atoms, 645 bonds, 28 residues, 1 model selected 
    19849 
    19850 > select add #9/A:452
    19851 
    19852 624 atoms, 670 bonds, 29 residues, 1 model selected 
    19853 
    19854 > select add #9/A:453
    19855 
    19856 646 atoms, 694 bonds, 30 residues, 1 model selected 
    19857 
    19858 > select add #9/A:454
    19859 
    19860 666 atoms, 715 bonds, 31 residues, 1 model selected 
    19861 
    19862 > select add #9/A:455
    19863 
    19864 686 atoms, 736 bonds, 32 residues, 1 model selected 
    19865 
    19866 > select add #9/A:456
    19867 
    19868 708 atoms, 760 bonds, 33 residues, 1 model selected 
    19869 
    19870 > select add #9/A:457
    19871 
    19872 728 atoms, 781 bonds, 34 residues, 1 model selected 
    19873 
    19874 > select add #9/A:458
    19875 
    19876 750 atoms, 805 bonds, 35 residues, 1 model selected 
    19877 
    19878 > select add #9/A:459
    19879 
    19880 770 atoms, 826 bonds, 36 residues, 1 model selected 
    19881 
    19882 > select add #9/A:460
    19883 
    19884 792 atoms, 850 bonds, 37 residues, 1 model selected 
    19885 
    19886 > select add #9/A:461
    19887 
    19888 815 atoms, 875 bonds, 38 residues, 1 model selected 
    19889 
    19890 > select add #9/A:462
    19891 
    19892 837 atoms, 899 bonds, 39 residues, 1 model selected 
    19893 
    19894 > select add #9/A:463
    19895 
    19896 859 atoms, 923 bonds, 40 residues, 1 model selected 
    19897 
    19898 > select add #9/A:465
    19899 
    19900 881 atoms, 947 bonds, 41 residues, 1 model selected 
    19901 
    19902 > select add #9/A:464
    19903 
    19904 903 atoms, 971 bonds, 42 residues, 1 model selected 
    19905 
    19906 > select add #9/A:466
    19907 
    19908 925 atoms, 995 bonds, 43 residues, 1 model selected 
    19909 
    19910 > select add #9/A:467
    19911 
    19912 948 atoms, 1020 bonds, 44 residues, 1 model selected 
    19913 
    19914 > select add #9/A:468
    19915 
    19916 968 atoms, 1041 bonds, 45 residues, 1 model selected 
    19917 
    19918 > select add #9/A:469
    19919 
    19920 990 atoms, 1065 bonds, 46 residues, 1 model selected 
    19921 
    19922 > select add #9/A:470
    19923 
    19924 1012 atoms, 1089 bonds, 47 residues, 1 model selected 
    19925 
    19926 > select add #9/A:511
    19927 
    19928 1035 atoms, 1114 bonds, 48 residues, 1 model selected 
    19929 
    19930 > select add #9/A:510
    19931 
    19932 1055 atoms, 1135 bonds, 49 residues, 1 model selected 
    19933 
    19934 > select add #9/A:509
    19935 
    19936 1075 atoms, 1156 bonds, 50 residues, 1 model selected 
    19937 
    19938 > select add #9/A:508
    19939 
    19940 1095 atoms, 1177 bonds, 51 residues, 1 model selected 
    19941 
    19942 > select add #9/A:507
    19943 
    19944 1115 atoms, 1198 bonds, 52 residues, 1 model selected 
    19945 
    19946 > select add #9/A:506
    19947 
    19948 1135 atoms, 1219 bonds, 53 residues, 1 model selected 
    19949 
    19950 > select add #9/A:505
    19951 
    19952 1155 atoms, 1240 bonds, 54 residues, 1 model selected 
    19953 
    19954 > select add #9/A:504
    19955 
    19956 1175 atoms, 1261 bonds, 55 residues, 1 model selected 
    19957 
    19958 > select add #9/A:503
    19959 
    19960 1198 atoms, 1286 bonds, 56 residues, 1 model selected 
    19961 
    19962 > select add #9/A:471
    19963 
    19964 1220 atoms, 1310 bonds, 57 residues, 1 model selected 
    19965 
    19966 > select add #9/A:472
    19967 
    19968 1243 atoms, 1335 bonds, 58 residues, 1 model selected 
    19969 
    19970 > select add #9/A:473
    19971 
    19972 1265 atoms, 1359 bonds, 59 residues, 1 model selected 
    19973 
    19974 > select add #9/A:502
    19975 
    19976 1287 atoms, 1383 bonds, 60 residues, 1 model selected 
    19977 
    19978 > select add #9/A:501
    19979 
    19980 1307 atoms, 1404 bonds, 61 residues, 1 model selected 
    19981 
    19982 > select add #9/A:474
    19983 
    19984 1330 atoms, 1429 bonds, 62 residues, 1 model selected 
    19985 
    19986 > select add #9/A:475
    19987 
    19988 1352 atoms, 1453 bonds, 63 residues, 1 model selected 
    19989 
    19990 > select add #9/A:476
    19991 
    19992 1374 atoms, 1477 bonds, 64 residues, 1 model selected 
    19993 
    19994 > select add #9/A:500
    19995 
    19996 1394 atoms, 1498 bonds, 65 residues, 1 model selected 
    19997 
    19998 > select add #9/A:499
    19999 
    20000 1414 atoms, 1519 bonds, 66 residues, 1 model selected 
    20001 
    20002 > select add #9/A:497
    20003 
    20004 1436 atoms, 1543 bonds, 67 residues, 1 model selected 
    20005 
    20006 > select add #9/A:498
    20007 
    20008 1459 atoms, 1568 bonds, 68 residues, 1 model selected 
    20009 
    20010 > select add #9/A:496
    20011 
    20012 1479 atoms, 1589 bonds, 69 residues, 1 model selected 
    20013 
    20014 > select add #9/A:495
    20015 
    20016 1501 atoms, 1613 bonds, 70 residues, 1 model selected 
    20017 
    20018 > select add #9/A:494
    20019 
    20020 1524 atoms, 1638 bonds, 71 residues, 1 model selected 
    20021 
    20022 > select add #9/A:493
    20023 
    20024 1544 atoms, 1659 bonds, 72 residues, 1 model selected 
    20025 
    20026 > select add #9/A:492
    20027 
    20028 1564 atoms, 1680 bonds, 73 residues, 1 model selected 
    20029 
    20030 > select add #9/A:491
    20031 
    20032 1584 atoms, 1701 bonds, 74 residues, 1 model selected 
    20033 
    20034 > select add #9/A:490
    20035 
    20036 1607 atoms, 1726 bonds, 75 residues, 1 model selected 
    20037 
    20038 > select add #9/A:477
    20039 
    20040 1630 atoms, 1751 bonds, 76 residues, 1 model selected 
    20041 
    20042 > select add #9/A:478
    20043 
    20044 1650 atoms, 1772 bonds, 77 residues, 1 model selected 
    20045 
    20046 > select add #9/A:479
    20047 
    20048 1670 atoms, 1793 bonds, 78 residues, 1 model selected 
    20049 
    20050 > select add #9/A:480
    20051 
    20052 1692 atoms, 1817 bonds, 79 residues, 1 model selected 
    20053 
    20054 > select add #9/A:481
    20055 
    20056 1712 atoms, 1838 bonds, 80 residues, 1 model selected 
    20057 
    20058 > select add #9/A:482
    20059 
    20060 1732 atoms, 1859 bonds, 81 residues, 1 model selected 
    20061 
    20062 > select add #9/A:483
    20063 
    20064 1755 atoms, 1884 bonds, 82 residues, 1 model selected 
    20065 
    20066 > select add #9/A:484
    20067 
    20068 1778 atoms, 1909 bonds, 83 residues, 1 model selected 
    20069 
    20070 > select add #9/A:485
    20071 
    20072 1801 atoms, 1934 bonds, 84 residues, 1 model selected 
    20073 
    20074 > select add #9/A:486
    20075 
    20076 1821 atoms, 1955 bonds, 85 residues, 1 model selected 
    20077 
    20078 > select add #9/A:487
    20079 
    20080 1843 atoms, 1979 bonds, 86 residues, 1 model selected 
    20081 
    20082 > select add #9/A:488
    20083 
    20084 1866 atoms, 2004 bonds, 87 residues, 1 model selected 
    20085 
    20086 > select add #9/A:489
    20087 
    20088 1886 atoms, 2025 bonds, 88 residues, 1 model selected 
    20089 
    20090 > select ~sel & ##selected
    20091 
    20092 10562 atoms, 11849 bonds, 492 residues, 1 model selected 
    20093 
    20094 > delete atoms sel
    20095 
    20096 > delete bonds sel
    20097 
    20098 > show #!2 models
    20099 
    20100 Drag select of 88 residues 
    20101 
    20102 > ui mousemode right "translate selected models"
    20103 
    20104 > view matrix models #9,1,0,0,41.263,0,1,0,144.01,0,0,1,230.28
    20105 
    20106 > view matrix models #9,1,0,0,219.74,0,1,0,136.11,0,0,1,249.41
    20107 
    20108 > view matrix models #9,1,0,0,154.35,0,1,0,159.36,0,0,1,226.92
    20109 
    20110 > view matrix models #9,1,0,0,181.32,0,1,0,233.48,0,0,1,173.65
    20111 
    20112 > ui mousemode right "rotate selected models"
    20113 
    20114 > view matrix models
    20115 > #9,0.32679,0.60574,-0.72546,218.6,-0.53288,-0.51586,-0.67077,286.3,-0.78054,0.60578,0.15421,218.01
    20116 
    20117 > view matrix models
    20118 > #9,-0.88041,0.29197,-0.37367,238.37,-0.39531,-0.88712,0.23822,253.08,-0.26194,0.35745,0.89645,180.36
    20119 
    20120 > view matrix models
    20121 > #9,-0.87581,0.46533,-0.12815,227.48,-0.45144,-0.69583,0.55859,240.75,0.17076,0.54707,0.81948,170.7
    20122 
    20123 > view matrix models
    20124 > #9,-0.68046,0.28151,0.67656,194.83,0.032567,-0.91074,0.4117,236.41,0.73207,0.30218,0.61055,167.05
    20125 
    20126 > view matrix models
    20127 > #9,-0.85807,0.45586,0.23647,213.7,-0.2549,-0.77781,0.57449,236.15,0.44581,0.43268,0.78361,166.4
    20128 
    20129 > ui mousemode right "translate selected models"
    20130 
    20131 > view matrix models
    20132 > #9,-0.85807,0.45586,0.23647,261.8,-0.2549,-0.77781,0.57449,145.88,0.44581,0.43268,0.78361,193.52
    20133 
    20134 > view matrix models
    20135 > #9,-0.85807,0.45586,0.23647,262.78,-0.2549,-0.77781,0.57449,142.92,0.44581,0.43268,0.78361,193.07
    20136 
    20137 > ui mousemode right "rotate selected models"
    20138 
    20139 > view matrix models
    20140 > #9,0.55794,-0.37125,0.74221,217.55,0.19875,-0.80856,-0.55384,173.7,0.80573,0.45652,-0.37734,226.82
    20141 
    20142 > view matrix models
    20143 > #9,0.98742,-0.13439,-0.083281,235.11,-0.14258,-0.52936,-0.83633,189.73,0.068309,0.83769,-0.54186,247.21
    20144 
    20145 > view matrix models
    20146 > #9,0.6963,0.64033,-0.32426,243.47,-0.2113,-0.24888,-0.9452,192.66,-0.68594,0.72667,-0.03799,248.25
    20147 
    20148 > view matrix models
    20149 > #9,0.99899,-0.04184,0.016596,230.22,0.002624,-0.31395,-0.94944,188.2,0.044935,0.94852,-0.31352,238.27
    20150 
    20151 > ui mousemode right "translate selected models"
    20152 
    20153 > view matrix models
    20154 > #9,0.99899,-0.04184,0.016596,231.19,0.002624,-0.31395,-0.94944,184.33,0.044935,0.94852,-0.31352,248.01
    20155 
    20156 > view matrix models
    20157 > #9,0.99899,-0.04184,0.016596,235.54,0.002624,-0.31395,-0.94944,195.82,0.044935,0.94852,-0.31352,238.21
    20158 
    20159 > view matrix models
    20160 > #9,0.99899,-0.04184,0.016596,237.39,0.002624,-0.31395,-0.94944,194.14,0.044935,0.94852,-0.31352,243.33
    20161 
    20162 > fitmap #9 inMap #2
    20163 
    20164 Fit molecule fold_r_efa_model_0.cif (#9) to map
    20165 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 1886 atoms 
    20166 average map value = 2.442, steps = 600 
    20167 shifted from previous position = 14.8 
    20168 rotated from previous position = 32.4 degrees 
    20169 atoms outside contour = 1442, contour level = 4.1986 
    20170  
    20171 Position of fold_r_efa_model_0.cif (#9) relative to
    20172 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    20173 Matrix rotation and translation 
    20174 -0.36298980 -0.26180162 0.89425853 189.41512718 
    20175 0.89898660 0.15402227 0.41000028 205.39844361 
    20176 -0.24507446 0.95275235 0.17944764 240.11193695 
    20177 Axis 0.31653466 0.66446246 0.67697522 
    20178 Axis point 52.42370966 16.54185657 0.00000000 
    20179 Rotation angle (degrees) 120.98141072 
    20180 Shift along axis 358.98583936 
    20181  
    20182 
    20183 > ui mousemode right "rotate selected models"
    20184 
    20185 > view matrix models
    20186 > #9,0.86718,-0.44716,0.21918,247.48,0.029717,-0.39288,-0.91911,202.99,0.4971,0.80355,-0.32741,227.76
    20187 
    20188 > view matrix models
    20189 > #9,0.86836,-0.44435,0.22024,247.38,0.033782,-0.39006,-0.92017,202.9,0.49478,0.80648,-0.3237,227.65
    20190 
    20191 > view matrix models
    20192 > #9,0.58834,-0.19676,0.78431,231,0.68961,-0.38439,-0.61374,175.45,0.42224,0.90196,-0.090461,219.89
    20193 
    20194 > ui mousemode right "translate selected models"
    20195 
    20196 > view matrix models
    20197 > #9,0.58834,-0.19676,0.78431,220.42,0.68961,-0.38439,-0.61374,172.67,0.42224,0.90196,-0.090461,231.53
    20198 
    20199 > view matrix models
    20200 > #9,0.58834,-0.19676,0.78431,223.9,0.68961,-0.38439,-0.61374,162.31,0.42224,0.90196,-0.090461,233.05
    20201 
    20202 > ui mousemode right "rotate selected models"
    20203 
    20204 > view matrix models
    20205 > #9,0.72775,-0.4496,0.51792,232.8,0.21721,-0.56519,-0.79585,182.41,0.65054,0.69167,-0.31366,237.76
    20206 
    20207 > view matrix models
    20208 > #9,0.79601,-0.22175,0.5632,227.2,0.38485,-0.53277,-0.75369,176.42,0.46719,0.81669,-0.33875,241.95
    20209 
    20210 > ui mousemode right "translate selected models"
    20211 
    20212 > view matrix models
    20213 > #9,0.79601,-0.22175,0.5632,224.22,0.38485,-0.53277,-0.75369,181.42,0.46719,0.81669,-0.33875,243.13
    20214 
    20215 > view matrix models
    20216 > #9,0.79601,-0.22175,0.5632,220.89,0.38485,-0.53277,-0.75369,180.86,0.46719,0.81669,-0.33875,242.55
    20217 
    20218 > hide #!2 models
    20219 
    20220 > fitmap #9 inMap #1
    20221 
    20222 Fit molecule fold_r_efa_model_0.cif (#9) to map
    20223 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 1886 atoms 
    20224 average map value = 3.243, steps = 124 
    20225 shifted from previous position = 6.38 
    20226 rotated from previous position = 25.3 degrees 
    20227 atoms outside contour = 845, contour level = 3.2169 
    20228  
    20229 Position of fold_r_efa_model_0.cif (#9) relative to
    20230 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    20231 Matrix rotation and translation 
    20232 0.94619130 -0.27848943 0.16482009 236.29978662 
    20233 0.00123308 -0.50621407 -0.86240697 196.35454887 
    20234 0.32360547 0.81620521 -0.47863195 255.26678505 
    20235 Axis 0.98213231 -0.09290309 0.16366169 
    20236 Axis point 0.00000000 48.23674098 170.97141072 
    20237 Rotation angle (degrees) 121.28714334 
    20238 Shift along axis 255.61310470 
    20239  
    20240 
    20241 > show #!2 models
    20242 
    20243 > select clear
    20244 
    20245 > select #9/A:459
    20246 
    20247 20 atoms, 21 bonds, 1 residue, 1 model selected 
    20248 
    20249 > select add #9/A:458
    20250 
    20251 42 atoms, 45 bonds, 2 residues, 1 model selected 
    20252 
    20253 > select add #9/A:456
    20254 
    20255 64 atoms, 69 bonds, 3 residues, 1 model selected 
    20256 
    20257 > select add #9/A:457
    20258 
    20259 84 atoms, 90 bonds, 4 residues, 1 model selected 
    20260 
    20261 > select add #9/A:455
    20262 
    20263 104 atoms, 111 bonds, 5 residues, 1 model selected 
    20264 
    20265 > select add #9/A:454
    20266 
    20267 124 atoms, 132 bonds, 6 residues, 1 model selected 
    20268 
    20269 > select add #9/A:512
    20270 
    20271 147 atoms, 157 bonds, 7 residues, 1 model selected 
    20272 
    20273 > select add #9/A:513
    20274 
    20275 170 atoms, 182 bonds, 8 residues, 1 model selected 
    20276 
    20277 > select add #9/A:514
    20278 
    20279 190 atoms, 203 bonds, 9 residues, 1 model selected 
    20280 
    20281 > select add #9/A:515
    20282 
    20283 212 atoms, 227 bonds, 10 residues, 1 model selected 
    20284 
    20285 > select add #9/A:516
    20286 
    20287 232 atoms, 248 bonds, 11 residues, 1 model selected 
    20288 
    20289 > select add #9/A:517
    20290 
    20291 255 atoms, 273 bonds, 12 residues, 1 model selected 
    20292 
    20293 > select add #9/A:518
    20294 
    20295 275 atoms, 294 bonds, 13 residues, 1 model selected 
    20296 
    20297 > select add #9/A:519
    20298 
    20299 298 atoms, 319 bonds, 14 residues, 1 model selected 
    20300 
    20301 > select add #9/A:432
    20302 
    20303 321 atoms, 344 bonds, 15 residues, 1 model selected 
    20304 
    20305 > select add #9/A:433
    20306 
    20307 341 atoms, 365 bonds, 16 residues, 1 model selected 
    20308 
    20309 > select add #9/A:434
    20310 
    20311 361 atoms, 386 bonds, 17 residues, 1 model selected 
    20312 
    20313 > select add #9/A:435
    20314 
    20315 383 atoms, 410 bonds, 18 residues, 1 model selected 
    20316 Drag select of 1 residues 
    20317 
    20318 > select #9/A:459
    20319 
    20320 20 atoms, 21 bonds, 1 residue, 1 model selected 
    20321 
    20322 > select add #9/A:512
    20323 
    20324 43 atoms, 46 bonds, 2 residues, 1 model selected 
    20325 
    20326 > select add #9/A:458
    20327 
    20328 65 atoms, 70 bonds, 3 residues, 1 model selected 
    20329 
    20330 > select add #9/A:457
    20331 
    20332 85 atoms, 91 bonds, 4 residues, 1 model selected 
    20333 
    20334 > select add #9/A:456
    20335 
    20336 107 atoms, 115 bonds, 5 residues, 1 model selected 
    20337 
    20338 > select add #9/A:455
    20339 
    20340 127 atoms, 136 bonds, 6 residues, 1 model selected 
    20341 
    20342 > select add #9/A:454
    20343 
    20344 147 atoms, 157 bonds, 7 residues, 1 model selected 
    20345 
    20346 > select add #9/A:513
    20347 
    20348 170 atoms, 182 bonds, 8 residues, 1 model selected 
    20349 
    20350 > select add #9/A:514
    20351 
    20352 190 atoms, 203 bonds, 9 residues, 1 model selected 
    20353 
    20354 > select add #9/A:515
    20355 
    20356 212 atoms, 227 bonds, 10 residues, 1 model selected 
    20357 
    20358 > select add #9/A:516
    20359 
    20360 232 atoms, 248 bonds, 11 residues, 1 model selected 
    20361 
    20362 > select add #9/A:517
    20363 
    20364 255 atoms, 273 bonds, 12 residues, 1 model selected 
    20365 
    20366 > select add #9/A:518
    20367 
    20368 275 atoms, 294 bonds, 13 residues, 1 model selected 
    20369 
    20370 > select add #9/A:519
    20371 
    20372 298 atoms, 319 bonds, 14 residues, 1 model selected 
    20373 
    20374 > select add #9/A:453
    20375 
    20376 320 atoms, 343 bonds, 15 residues, 1 model selected 
    20377 
    20378 > select add #9/A:452
    20379 
    20380 343 atoms, 368 bonds, 16 residues, 1 model selected 
    20381 
    20382 > select add #9/A:451
    20383 
    20384 365 atoms, 392 bonds, 17 residues, 1 model selected 
    20385 
    20386 > select add #9/A:450
    20387 
    20388 385 atoms, 413 bonds, 18 residues, 1 model selected 
    20389 
    20390 > select add #9/A:449
    20391 
    20392 405 atoms, 434 bonds, 19 residues, 1 model selected 
    20393 
    20394 > select add #9/A:448
    20395 
    20396 428 atoms, 459 bonds, 20 residues, 1 model selected 
    20397 
    20398 > select add #9/A:447
    20399 
    20400 450 atoms, 483 bonds, 21 residues, 1 model selected 
    20401 
    20402 > select add #9/A:446
    20403 
    20404 473 atoms, 508 bonds, 22 residues, 1 model selected 
    20405 
    20406 > select add #9/A:445
    20407 
    20408 495 atoms, 532 bonds, 23 residues, 1 model selected 
    20409 
    20410 > select add #9/A:444
    20411 
    20412 515 atoms, 553 bonds, 24 residues, 1 model selected 
    20413 
    20414 > select add #9/A:443
    20415 
    20416 538 atoms, 578 bonds, 25 residues, 1 model selected 
    20417 
    20418 > select add #9/A:442
    20419 
    20420 560 atoms, 602 bonds, 26 residues, 1 model selected 
    20421 
    20422 > select add #9/A:441
    20423 
    20424 580 atoms, 623 bonds, 27 residues, 1 model selected 
    20425 
    20426 > select add #9/A:440
    20427 
    20428 600 atoms, 644 bonds, 28 residues, 1 model selected 
    20429 
    20430 > select add #9/A:439
    20431 
    20432 623 atoms, 669 bonds, 29 residues, 1 model selected 
    20433 
    20434 > select add #9/A:438
    20435 
    20436 645 atoms, 693 bonds, 30 residues, 1 model selected 
    20437 
    20438 > select add #9/A:437
    20439 
    20440 665 atoms, 714 bonds, 31 residues, 1 model selected 
    20441 
    20442 > select add #9/A:436
    20443 
    20444 685 atoms, 735 bonds, 32 residues, 1 model selected 
    20445 
    20446 > select add #9/A:435
    20447 
    20448 707 atoms, 759 bonds, 33 residues, 1 model selected 
    20449 
    20450 > select add #9/A:434
    20451 
    20452 727 atoms, 780 bonds, 34 residues, 1 model selected 
    20453 
    20454 > select add #9/A:433
    20455 
    20456 747 atoms, 801 bonds, 35 residues, 1 model selected 
    20457 
    20458 > select add #9/A:432
    20459 
    20460 770 atoms, 826 bonds, 36 residues, 1 model selected 
    20461 
    20462 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R12.pdb models #9
    20463 > selectedOnly true relModel #9
    20464 
    20465 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R12.pdb
    20466 
    20467 Chain information for R12.pdb #3 
    20468 --- 
    20469 Chain | Description 
    20470 A | No description available 
    20471  
    20472 
    20473 > delete atoms sel
    20474 
    20475 > delete bonds sel
    20476 
    20477 > show #!2 models
    20478 
    20479 > show #!1 models
    20480 
    20481 Drag select of 1 shapes 
    20482 
    20483 > view matrix models #3,1,0,0,-50.191,0,1,0,37.877,0,0,1,225.97
    20484 
    20485 > view matrix models #3,1,0,0,146.28,0,1,0,44.293,0,0,1,340.67
    20486 
    20487 > view matrix models #3,1,0,0,215.82,0,1,0,215.09,0,0,1,268.85
    20488 
    20489 > view matrix models #3,1,0,0,242.67,0,1,0,189.42,0,0,1,228.63
    20490 
    20491 > view matrix models #3,1,0,0,253.2,0,1,0,189.42,0,0,1,204.72
    20492 
    20493 > view matrix models #3,1,0,0,243.03,0,1,0,189.89,0,0,1,195.75
    20494 
    20495 > ui mousemode right "rotate selected models"
    20496 
    20497 > view matrix models
    20498 > #3,0.97525,0.10679,0.19359,238.96,-0.13692,0.97922,0.14958,186.6,-0.1736,-0.17239,0.96961,196.18
    20499 
    20500 > hide #!2 models
    20501 
    20502 > show #!2 models
    20503 
    20504 > hide #!1 models
    20505 
    20506 > fitmap #3 inMap #2
    20507 
    20508 Fit molecule R12.pdb (#3) to map
    20509 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 770 atoms 
    20510 average map value = 3.607, steps = 92 
    20511 shifted from previous position = 4.54 
    20512 rotated from previous position = 20.1 degrees 
    20513 atoms outside contour = 485, contour level = 4.1986 
    20514  
    20515 Position of R12.pdb (#3) relative to
    20516 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    20517 Matrix rotation and translation 
    20518 -0.58257938 -0.39982764 -0.70762923 238.80442532 
    20519 0.81079941 -0.22524337 -0.54024971 234.63448659 
    20520 0.05661798 -0.88848370 0.45540216 205.91116344 
    20521 Axis -0.23634444 -0.51869026 0.82164574 
    20522 Axis point 87.50522764 245.61481572 0.00000000 
    20523 Rotation angle (degrees) 132.54820723 
    20524 Shift along axis -8.95669163 
    20525  
    20526 
    20527 > view matrix models
    20528 > #3,0.99205,-0.10564,-0.06846,245.42,0.11794,0.97009,0.21215,184.84,0.044001,-0.21854,0.97484,194.09
    20529 
    20530 > view matrix models
    20531 > #3,-0.049106,-0.75511,-0.65376,267.21,0.27118,-0.64004,0.71889,140.07,-0.96128,-0.14198,0.2362,232.28
    20532 
    20533 > view matrix models
    20534 > #3,-0.67562,-0.72577,-0.12957,259.35,-0.020321,-0.15735,0.98733,143.38,-0.73697,0.6697,0.091557,247.31
    20535 
    20536 > view matrix models
    20537 > #3,-0.40256,-0.54714,0.73388,231.17,0.63029,0.41572,0.65568,154.73,-0.66384,0.7265,0.17751,244.53
    20538 
    20539 > view matrix models
    20540 > #3,-0.34003,-0.24602,0.90766,229.77,0.64004,0.6466,0.41503,166.08,-0.689,0.72207,-0.062405,252.43
    20541 
    20542 > view matrix models
    20543 > #3,-0.41698,-0.44324,0.79351,231.18,0.50315,0.6145,0.60764,161.24,-0.75694,0.65264,-0.033218,251.26
    20544 
    20545 > ui mousemode right "translate selected models"
    20546 
    20547 > view matrix models
    20548 > #3,-0.41698,-0.44324,0.79351,235.03,0.50315,0.6145,0.60764,156.74,-0.75694,0.65264,-0.033218,248.36
    20549 
    20550 > fitmap #3 inMap #2
    20551 
    20552 Fit molecule R12.pdb (#3) to map
    20553 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 770 atoms 
    20554 average map value = 3.024, steps = 128 
    20555 shifted from previous position = 3.57 
    20556 rotated from previous position = 29.1 degrees 
    20557 atoms outside contour = 523, contour level = 4.1986 
    20558  
    20559 Position of R12.pdb (#3) relative to
    20560 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    20561 Matrix rotation and translation 
    20562 0.24518153 -0.87965383 -0.40754774 213.20447272 
    20563 -0.48421084 -0.47530228 0.73459350 210.27644424 
    20564 -0.83989635 0.01723028 -0.54247326 263.58066496 
    20565 Axis -0.77449411 0.46678091 0.42693612 
    20566 Axis point 0.00000000 208.08133390 160.59594891 
    20567 Rotation angle (degrees) 152.41155621 
    20568 Shift along axis 45.55952671 
    20569  
    20570 
    20571 > ui mousemode right "rotate selected models"
    20572 
    20573 > view matrix models
    20574 > #3,-0.65874,0.012194,0.75227,244.44,0.57613,0.65123,0.49394,162.8,-0.48388,0.75878,-0.43602,258.34
    20575 
    20576 > view matrix models
    20577 > #3,0.1747,0.015883,0.98449,225.99,0.95932,0.22248,-0.17382,171.88,-0.22179,0.97481,0.023629,243.78
    20578 
    20579 > view matrix models
    20580 > #3,0.17745,0.48375,0.85703,237.75,0.37108,0.77368,-0.51354,199.65,-0.91149,0.40915,-0.042223,245.73
    20581 
    20582 > view matrix models
    20583 > #3,0.54555,0.19148,0.81591,229.32,0.63362,0.54297,-0.55109,193.53,-0.54854,0.81763,0.1749,240.72
    20584 
    20585 > view matrix models
    20586 > #3,0.30489,-0.24467,0.92042,222,0.68615,0.72666,-0.034125,179.4,-0.66049,0.64195,0.38943,232.48
    20587 
    20588 > view matrix models
    20589 > #3,0.59993,-0.63039,0.49263,225.32,0.79887,0.43846,-0.41178,185.17,0.043581,0.64059,0.76665,211.06
    20590 
    20591 > view matrix models
    20592 > #3,0.86021,0.36827,0.35273,242.8,0.060427,0.61323,-0.78759,209.86,-0.50635,0.69881,0.50525,227.67
    20593 
    20594 > view matrix models
    20595 > #3,0.67543,0.036033,0.73654,227.55,0.33587,0.87416,-0.35076,196.59,-0.6565,0.4843,0.57833,223.8
    20596 
    20597 > view matrix models
    20598 > #3,0.60004,-0.51561,0.61164,223.42,0.57331,0.8104,0.12071,177.36,-0.55791,0.27823,0.78188,212.6
    20599 
    20600 > ui mousemode right "translate selected models"
    20601 
    20602 > view matrix models
    20603 > #3,0.60004,-0.51561,0.61164,216.61,0.57331,0.8104,0.12071,178.58,-0.55791,0.27823,0.78188,216.35
    20604 
    20605 > view matrix models
    20606 > #3,0.60004,-0.51561,0.61164,220.1,0.57331,0.8104,0.12071,177.62,-0.55791,0.27823,0.78188,214.92
    20607 
    20608 > ui mousemode right "rotate selected models"
    20609 
    20610 > view matrix models
    20611 > #3,0.30366,-0.81599,0.49189,222.91,0.74882,0.52361,0.40633,161.45,-0.58912,0.24495,0.77003,215.16
    20612 
    20613 > view matrix models
    20614 > #3,0.25986,-0.71236,0.65193,220.11,0.72633,0.58908,0.35417,164.49,-0.63633,0.38148,0.67049,221.22
    20615 
    20616 > ui mousemode right "translate selected models"
    20617 
    20618 > view matrix models
    20619 > #3,0.25986,-0.71236,0.65193,219.91,0.72633,0.58908,0.35417,159.32,-0.63633,0.38148,0.67049,222.94
    20620 
    20621 > view matrix models
    20622 > #3,0.25986,-0.71236,0.65193,221.11,0.72633,0.58908,0.35417,159.25,-0.63633,0.38148,0.67049,222.52
    20623 
    20624 > ui mousemode right "rotate selected models"
    20625 
    20626 > view matrix models
    20627 > #3,0.25971,-0.71353,0.65071,221.13,0.72729,0.58782,0.35429,159.21,-0.63529,0.38124,0.67161,222.47
    20628 
    20629 > view matrix models
    20630 > #3,0.9098,-0.20228,0.36242,230.09,0.29964,0.92433,-0.23628,189.28,-0.2872,0.32357,0.90157,209.55
    20631 
    20632 > view matrix models
    20633 > #3,0.92766,0.32309,-0.18723,256.04,-0.37245,0.83669,-0.40153,202.05,0.026921,0.44222,0.8965,207.49
    20634 
    20635 > view matrix models
    20636 > #3,0.80355,-0.41296,-0.42869,253.22,-0.54927,-0.23689,-0.80136,199.41,0.22938,0.8794,-0.41718,253.85
    20637 
    20638 > view matrix models
    20639 > #3,0.84689,0.09253,-0.52366,264.02,-0.2792,-0.76073,-0.58595,180.3,-0.45258,0.64244,-0.61841,265.43
    20640 
    20641 > view matrix models
    20642 > #3,0.89594,-0.43708,0.079113,235.42,-0.43621,-0.89938,-0.028893,162.36,0.083781,-0.0086236,-0.99645,259.57
    20643 
    20644 > view matrix models
    20645 > #3,-0.016224,-0.99263,0.12005,237.1,-0.93978,-0.025857,-0.3408,193.43,0.34139,-0.11835,-0.93244,252.28
    20646 
    20647 > view matrix models
    20648 > #3,0.74139,-0.62719,0.23869,229.26,-0.44485,-0.72564,-0.52494,181.14,0.50244,0.283,-0.81699,253.09
    20649 
    20650 > view matrix models
    20651 > #3,0.44957,-0.79213,0.41282,224.88,-0.71792,-0.59541,-0.36067,181.7,0.5315,-0.13423,-0.83636,246.43
    20652 
    20653 > view matrix models
    20654 > #3,-0.037505,-0.87608,0.48071,227.82,-0.98212,-0.056494,-0.17958,188.36,0.18449,-0.47884,-0.8583,246.06
    20655 
    20656 > view matrix models
    20657 > #3,-0.51017,-0.84925,-0.136,254.2,-0.48849,0.41626,-0.76688,208.29,0.70789,-0.3248,-0.62722,234.27
    20658 
    20659 > view matrix models
    20660 > #3,-0.29987,-0.90587,0.29914,236.61,-0.55319,-0.090346,-0.82814,202.74,0.77721,-0.41381,-0.47403,226.99
    20661 
    20662 > fitmap #3 inMap #2
    20663 
    20664 Fit molecule R12.pdb (#3) to map
    20665 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 770 atoms 
    20666 average map value = 5.168, steps = 88 
    20667 shifted from previous position = 6.9 
    20668 rotated from previous position = 21.5 degrees 
    20669 atoms outside contour = 310, contour level = 4.1986 
    20670  
    20671 Position of R12.pdb (#3) relative to
    20672 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    20673 Matrix rotation and translation 
    20674 -0.31221035 0.70323993 0.63873179 210.20425143 
    20675 -0.23945718 -0.70888502 0.66343220 205.67402676 
    20676 0.91933941 0.05418149 0.38971709 212.69406482 
    20677 Axis -0.52658665 -0.24253435 -0.81479052 
    20678 Axis point 60.75190156 64.45747991 0.00000000 
    20679 Rotation angle (degrees) 144.65555940 
    20680 Shift along axis -333.87487593 
    20681  
    20682 
    20683 > select #9/A:495
    20684 
    20685 22 atoms, 24 bonds, 1 residue, 1 model selected 
    20686 
    20687 > ui mousemode right "translate selected models"
    20688 
    20689 > view matrix models
    20690 > #9,0.94619,-0.27849,0.16482,238.22,0.0012331,-0.50621,-0.86241,200.13,0.32361,0.81621,-0.47863,242.64
    20691 
    20692 > view matrix models
    20693 > #9,0.94619,-0.27849,0.16482,239.72,0.0012331,-0.50621,-0.86241,200.05,0.32361,0.81621,-0.47863,241.86
    20694 
    20695 Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
    20696 got 2 atomic models, 2 maps. 
    20697 
    20698 > hide #!2 models
    20699 
    20700 > fitmap #9 inMap #1
    20701 
    20702 Fit molecule fold_r_efa_model_0.cif (#9) to map
    20703 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 1116 atoms 
    20704 average map value = 2.507, steps = 100 
    20705 shifted from previous position = 8.31 
    20706 rotated from previous position = 18.4 degrees 
    20707 atoms outside contour = 675, contour level = 3.2169 
    20708  
    20709 Position of fold_r_efa_model_0.cif (#9) relative to
    20710 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    20711 Matrix rotation and translation 
    20712 0.98877804 -0.14910514 -0.00925415 237.73583242 
    20713 -0.10825863 -0.67246622 -0.73216750 202.88810147 
    20714 0.10294683 0.72495299 -0.68106175 264.98558628 
    20715 Axis 0.99665927 -0.07674461 0.02793870 
    20716 Axis point 0.00000000 54.22845804 177.21360245 
    20717 Rotation angle (degrees) 133.02951147 
    20718 Shift along axis 228.77440410 
    20719  
    20720 
    20721 > ui mousemode right "rotate selected models"
    20722 
    20723 > view matrix models
    20724 > #9,0.91467,-0.38337,0.12807,239.52,0.026187,-0.25998,-0.96526,199.27,0.40334,0.88625,-0.22775,233.87
    20725 
    20726 > view matrix models
    20727 > #9,0.87884,-0.47512,-0.043533,249.94,-0.2349,-0.35146,-0.90626,205.98,0.41528,0.80668,-0.42048,243.61
    20728 
    20729 > ui mousemode right "translate selected models"
    20730 
    20731 > view matrix models
    20732 > #9,0.87884,-0.47512,-0.043533,252.56,-0.2349,-0.35146,-0.90626,205.27,0.41528,0.80668,-0.42048,234.12
    20733 
    20734 > view matrix models
    20735 > #9,0.87884,-0.47512,-0.043533,251.74,-0.2349,-0.35146,-0.90626,204.92,0.41528,0.80668,-0.42048,236.37
    20736 
    20737 > fitmap #9 inMap #1
    20738 
    20739 Fit molecule fold_r_efa_model_0.cif (#9) to map
    20740 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) using 1116 atoms 
    20741 average map value = 3.669, steps = 140 
    20742 shifted from previous position = 11.9 
    20743 rotated from previous position = 15.5 degrees 
    20744 atoms outside contour = 387, contour level = 3.2169 
    20745  
    20746 Position of fold_r_efa_model_0.cif (#9) relative to
    20747 cryosparc_P104_J132_8mers_6dot8_map_emready_zflip.mrc (#1) coordinates: 
    20748 Matrix rotation and translation 
    20749 0.82641705 -0.48008627 -0.29419726 262.69845166 
    20750 -0.47258351 -0.30735813 -0.82595145 204.49111848 
    20751 0.30610404 0.82161314 -0.48088685 253.05237770 
    20752 Axis 0.93956725 -0.34233768 0.00427865 
    20753 Axis point 0.00000000 70.61600726 209.54351936 
    20754 Rotation angle (degrees) 118.74511159 
    20755 Shift along axis 177.90056805 
    20756  
    20757 
    20758 > show #!5 models
    20759 
    20760 > hide #!3 models
    20761 
    20762 > show #!3 models
    20763 
    20764 > combine #3 #5 #9
    20765 
    20766 Remapping chain ID 'A' in combination #5 to 'L' 
    20767 Remapping chain ID 'A' in fold_r_efa_model_0.cif #9 to 'M' 
    20768 
    20769 > hide #!4 models
    20770 
    20771 > hide #!3 models
    20772 
    20773 > hide #!5 models
    20774 
    20775 > hide #9 models
    20776 
    20777 > show #!5 models
    20778 
    20779 > show #!4 models
    20780 
    20781 > hide #!5 models
    20782 
    20783 > close #5
    20784 
    20785 > show #9 models
    20786 
    20787 > hide #9 models
    20788 
    20789 > hide #!4 models
    20790 
    20791 > show #9 models
    20792 
    20793 > close #9
    20794 
    20795 > show #!3 models
    20796 
    20797 > hide #!3 models
    20798 
    20799 > close #3
    20800 
    20801 > show #16 models
    20802 
    20803 > hide #!2 models
    20804 
    20805 > select #16/A:436
    20806 
    20807 20 atoms, 21 bonds, 1 residue, 1 model selected 
    20808 
    20809 > select add #16/A:435
    20810 
    20811 42 atoms, 45 bonds, 2 residues, 1 model selected 
    20812 
    20813 > select add #16/A:434
    20814 
    20815 62 atoms, 66 bonds, 3 residues, 1 model selected 
    20816 
    20817 > select add #16/A:433
    20818 
    20819 82 atoms, 87 bonds, 4 residues, 1 model selected 
    20820 
    20821 > select add #16/A:432
    20822 
    20823 105 atoms, 112 bonds, 5 residues, 1 model selected 
    20824 
    20825 > select add #16/A:431
    20826 
    20827 127 atoms, 136 bonds, 6 residues, 1 model selected 
    20828 
    20829 > select add #16/A:343
    20830 
    20831 150 atoms, 161 bonds, 7 residues, 1 model selected 
    20832 
    20833 > select add #16/A:344
    20834 
    20835 173 atoms, 186 bonds, 8 residues, 1 model selected 
    20836 
    20837 > select add #16/A:345
    20838 
    20839 193 atoms, 207 bonds, 9 residues, 1 model selected 
    20840 
    20841 > select add #16/A:346
    20842 
    20843 215 atoms, 231 bonds, 10 residues, 1 model selected 
    20844 
    20845 > select add #16/A:347
    20846 
    20847 235 atoms, 252 bonds, 11 residues, 1 model selected 
    20848 
    20849 > select add #16/A:348
    20850 
    20851 258 atoms, 277 bonds, 12 residues, 1 model selected 
    20852 
    20853 > select add #16/A:349
    20854 
    20855 280 atoms, 301 bonds, 13 residues, 1 model selected 
    20856 
    20857 > select add #16/A:350
    20858 
    20859 303 atoms, 326 bonds, 14 residues, 1 model selected 
    20860 
    20861 > select add #16/A:350
    20862 
    20863 303 atoms, 326 bonds, 14 residues, 1 model selected 
    20864 
    20865 > select add #16/A:351
    20866 
    20867 323 atoms, 347 bonds, 15 residues, 1 model selected 
    20868 
    20869 > select add #16/A:352
    20870 
    20871 345 atoms, 371 bonds, 16 residues, 1 model selected 
    20872 
    20873 > select add #16/A:353
    20874 
    20875 368 atoms, 396 bonds, 17 residues, 1 model selected 
    20876 
    20877 > select add #16/A:430
    20878 
    20879 390 atoms, 420 bonds, 18 residues, 1 model selected 
    20880 
    20881 > select add #16/A:429
    20882 
    20883 412 atoms, 444 bonds, 19 residues, 1 model selected 
    20884 
    20885 > select add #16/A:428
    20886 
    20887 435 atoms, 469 bonds, 20 residues, 1 model selected 
    20888 
    20889 > select add #16/A:427
    20890 
    20891 455 atoms, 490 bonds, 21 residues, 1 model selected 
    20892 
    20893 > select add #16/A:426
    20894 
    20895 478 atoms, 515 bonds, 22 residues, 1 model selected 
    20896 
    20897 > select add #16/A:425
    20898 
    20899 500 atoms, 539 bonds, 23 residues, 1 model selected 
    20900 
    20901 > select add #16/A:424
    20902 
    20903 522 atoms, 563 bonds, 24 residues, 1 model selected 
    20904 
    20905 > select add #16/A:423
    20906 
    20907 542 atoms, 584 bonds, 25 residues, 1 model selected 
    20908 
    20909 > select add #16/A:422
    20910 
    20911 562 atoms, 605 bonds, 26 residues, 1 model selected 
    20912 
    20913 > select add #16/A:354
    20914 
    20915 582 atoms, 626 bonds, 27 residues, 1 model selected 
    20916 
    20917 > select add #16/A:355
    20918 
    20919 602 atoms, 647 bonds, 28 residues, 1 model selected 
    20920 
    20921 > select add #16/A:356
    20922 
    20923 622 atoms, 668 bonds, 29 residues, 1 model selected 
    20924 
    20925 > select add #16/A:357
    20926 
    20927 644 atoms, 692 bonds, 30 residues, 1 model selected 
    20928 
    20929 > select add #16/A:358
    20930 
    20931 666 atoms, 716 bonds, 31 residues, 1 model selected 
    20932 
    20933 > select add #16/A:359
    20934 
    20935 686 atoms, 737 bonds, 32 residues, 1 model selected 
    20936 
    20937 > select add #16/A:360
    20938 
    20939 709 atoms, 762 bonds, 33 residues, 1 model selected 
    20940 
    20941 > select add #16/A:361
    20942 
    20943 729 atoms, 783 bonds, 34 residues, 1 model selected 
    20944 
    20945 > select add #16/A:362
    20946 
    20947 751 atoms, 807 bonds, 35 residues, 1 model selected 
    20948 
    20949 > select add #16/A:363
    20950 
    20951 774 atoms, 832 bonds, 36 residues, 1 model selected 
    20952 
    20953 > select add #16/A:364
    20954 
    20955 794 atoms, 853 bonds, 37 residues, 1 model selected 
    20956 
    20957 > select add #16/A:421
    20958 
    20959 814 atoms, 874 bonds, 38 residues, 1 model selected 
    20960 
    20961 > select add #16/A:420
    20962 
    20963 837 atoms, 899 bonds, 39 residues, 1 model selected 
    20964 
    20965 > select add #16/A:418
    20966 
    20967 859 atoms, 923 bonds, 40 residues, 1 model selected 
    20968 
    20969 > select add #16/A:419
    20970 
    20971 879 atoms, 944 bonds, 41 residues, 1 model selected 
    20972 
    20973 > select add #16/A:417
    20974 
    20975 901 atoms, 968 bonds, 42 residues, 1 model selected 
    20976 
    20977 > select add #16/A:416
    20978 
    20979 924 atoms, 993 bonds, 43 residues, 1 model selected 
    20980 
    20981 > select add #16/A:415
    20982 
    20983 944 atoms, 1014 bonds, 44 residues, 1 model selected 
    20984 
    20985 > select add #16/A:414
    20986 
    20987 964 atoms, 1035 bonds, 45 residues, 1 model selected 
    20988 
    20989 > select add #16/A:365
    20990 
    20991 986 atoms, 1059 bonds, 46 residues, 1 model selected 
    20992 
    20993 > select add #16/A:366
    20994 
    20995 1008 atoms, 1083 bonds, 47 residues, 1 model selected 
    20996 
    20997 > select add #16/A:367
    20998 
    20999 1028 atoms, 1104 bonds, 48 residues, 1 model selected 
    21000 
    21001 > select add #16/A:368
    21002 
    21003 1048 atoms, 1125 bonds, 49 residues, 1 model selected 
    21004 
    21005 > select add #16/A:369
    21006 
    21007 1068 atoms, 1146 bonds, 50 residues, 1 model selected 
    21008 
    21009 > select add #16/A:370
    21010 
    21011 1090 atoms, 1170 bonds, 51 residues, 1 model selected 
    21012 
    21013 > select add #16/A:371
    21014 
    21015 1110 atoms, 1191 bonds, 52 residues, 1 model selected 
    21016 
    21017 > select add #16/A:413
    21018 
    21019 1133 atoms, 1216 bonds, 53 residues, 1 model selected 
    21020 
    21021 > select add #16/A:412
    21022 
    21023 1153 atoms, 1237 bonds, 54 residues, 1 model selected 
    21024 
    21025 > select add #16/A:411
    21026 
    21027 1175 atoms, 1261 bonds, 55 residues, 1 model selected 
    21028 
    21029 > select add #16/A:410
    21030 
    21031 1197 atoms, 1285 bonds, 56 residues, 1 model selected 
    21032 
    21033 > select add #16/A:409
    21034 
    21035 1219 atoms, 1309 bonds, 57 residues, 1 model selected 
    21036 
    21037 > select add #16/A:408
    21038 
    21039 1239 atoms, 1330 bonds, 58 residues, 1 model selected 
    21040 
    21041 > select add #16/A:407
    21042 
    21043 1262 atoms, 1355 bonds, 59 residues, 1 model selected 
    21044 
    21045 > select add #16/A:406
    21046 
    21047 1282 atoms, 1376 bonds, 60 residues, 1 model selected 
    21048 
    21049 > select add #16/A:405
    21050 
    21051 1304 atoms, 1400 bonds, 61 residues, 1 model selected 
    21052 
    21053 > select add #16/A:372
    21054 
    21055 1324 atoms, 1421 bonds, 62 residues, 1 model selected 
    21056 
    21057 > select add #16/A:373
    21058 
    21059 1344 atoms, 1442 bonds, 63 residues, 1 model selected 
    21060 
    21061 > select add #16/A:374
    21062 
    21063 1366 atoms, 1466 bonds, 64 residues, 1 model selected 
    21064 
    21065 > select add #16/A:375
    21066 
    21067 1386 atoms, 1487 bonds, 65 residues, 1 model selected 
    21068 
    21069 > select add #16/A:376
    21070 
    21071 1408 atoms, 1511 bonds, 66 residues, 1 model selected 
    21072 
    21073 > select add #16/A:377
    21074 
    21075 1431 atoms, 1536 bonds, 67 residues, 1 model selected 
    21076 
    21077 > select add #16/A:378
    21078 
    21079 1453 atoms, 1560 bonds, 68 residues, 1 model selected 
    21080 
    21081 > select add #16/A:379
    21082 
    21083 1473 atoms, 1581 bonds, 69 residues, 1 model selected 
    21084 
    21085 > select add #16/A:380
    21086 
    21087 1496 atoms, 1606 bonds, 70 residues, 1 model selected 
    21088 
    21089 > select add #16/A:381
    21090 
    21091 1518 atoms, 1630 bonds, 71 residues, 1 model selected 
    21092 
    21093 > select add #16/A:382
    21094 
    21095 1538 atoms, 1651 bonds, 72 residues, 1 model selected 
    21096 
    21097 > select add #16/A:383
    21098 
    21099 1560 atoms, 1675 bonds, 73 residues, 1 model selected 
    21100 
    21101 > select add #16/A:404
    21102 
    21103 1580 atoms, 1696 bonds, 74 residues, 1 model selected 
    21104 
    21105 > select add #16/A:403
    21106 
    21107 1600 atoms, 1717 bonds, 75 residues, 1 model selected 
    21108 
    21109 > select add #16/A:402
    21110 
    21111 1620 atoms, 1738 bonds, 76 residues, 1 model selected 
    21112 
    21113 > select add #16/A:401
    21114 
    21115 1640 atoms, 1759 bonds, 77 residues, 1 model selected 
    21116 
    21117 > select add #16/A:400
    21118 
    21119 1660 atoms, 1780 bonds, 78 residues, 1 model selected 
    21120 
    21121 > select add #16/A:399
    21122 
    21123 1682 atoms, 1804 bonds, 79 residues, 1 model selected 
    21124 
    21125 > select add #16/A:398
    21126 
    21127 1705 atoms, 1829 bonds, 80 residues, 1 model selected 
    21128 
    21129 > select add #16/A:397
    21130 
    21131 1728 atoms, 1854 bonds, 81 residues, 1 model selected 
    21132 
    21133 > select add #16/A:396
    21134 
    21135 1751 atoms, 1879 bonds, 82 residues, 1 model selected 
    21136 
    21137 > select add #16/A:395
    21138 
    21139 1771 atoms, 1900 bonds, 83 residues, 1 model selected 
    21140 
    21141 > select add #16/A:394
    21142 
    21143 1793 atoms, 1924 bonds, 84 residues, 1 model selected 
    21144 
    21145 > select add #16/A:393
    21146 
    21147 1815 atoms, 1948 bonds, 85 residues, 1 model selected 
    21148 
    21149 > select add #16/A:392
    21150 
    21151 1837 atoms, 1972 bonds, 86 residues, 1 model selected 
    21152 
    21153 > select add #16/A:391
    21154 
    21155 1859 atoms, 1996 bonds, 87 residues, 1 model selected 
    21156 
    21157 > select add #16/A:390
    21158 
    21159 1881 atoms, 2020 bonds, 88 residues, 1 model selected 
    21160 
    21161 > select add #16/A:389
    21162 
    21163 1901 atoms, 2041 bonds, 89 residues, 1 model selected 
    21164 
    21165 > select add #16/A:388
    21166 
    21167 1923 atoms, 2065 bonds, 90 residues, 1 model selected 
    21168 
    21169 > select add #16/A:387
    21170 
    21171 1945 atoms, 2089 bonds, 91 residues, 1 model selected 
    21172 
    21173 > select add #16/A:386
    21174 
    21175 1965 atoms, 2110 bonds, 92 residues, 1 model selected 
    21176 
    21177 > select add #16/A:385
    21178 
    21179 1987 atoms, 2134 bonds, 93 residues, 1 model selected 
    21180 
    21181 > select add #16/A:384
    21182 
    21183 2009 atoms, 2158 bonds, 94 residues, 1 model selected 
    21184 
    21185 > select ~sel & ##selected
    21186 
    21187 10439 atoms, 11710 bonds, 486 residues, 1 model selected 
    21188 
    21189 > delete atoms sel
    21190 
    21191 > delete bonds sel
    21192 
    21193 > show #!2 models
    21194 
    21195 > show #!1 models
    21196 
    21197 > hide #!1 models
    21198 
    21199 Drag select of 42 residues, 82 shapes 
    21200 
    21201 > view matrix models #16,1,0,0,239.26,0,1,0,193.36,0,0,1,158.73
    21202 
    21203 > ui mousemode right "rotate selected models"
    21204 
    21205 > view matrix models
    21206 > #16,0.82142,-0.34682,-0.45275,274.14,-0.14781,0.63726,-0.75634,237.98,0.55084,0.6882,0.47219,130.5
    21207 
    21208 > view matrix models
    21209 > #16,0.64755,-0.69391,-0.31491,289.96,0.06244,0.46018,-0.88563,245.9,0.75946,0.55383,0.34132,136.46
    21210 
    21211 > ui mousemode right "translate selected models"
    21212 
    21213 > view matrix models
    21214 > #16,0.64755,-0.69391,-0.31491,257.81,0.06244,0.46018,-0.88563,171.38,0.75946,0.55383,0.34132,226.11
    21215 
    21216 > ui mousemode right "rotate selected models"
    21217 
    21218 > view matrix models
    21219 > #16,0.98678,-0.11358,-0.11557,216.48,0.068376,0.93847,-0.33853,131.19,0.14691,0.32615,0.93383,231.64
    21220 
    21221 > view matrix models
    21222 > #16,0.67569,0.19351,-0.71134,227.33,-0.67905,0.53896,-0.49841,171.68,0.28694,0.8198,0.49557,218.8
    21223 
    21224 > view matrix models
    21225 > #16,0.97442,-0.1193,-0.19044,219.27,-0.079692,0.60893,-0.78921,164.56,0.21012,0.7842,0.58385,219.37
    21226 
    21227 > view matrix models
    21228 > #16,0.62818,-0.62856,0.45859,230.5,0.75222,0.33995,-0.56444,152.35,0.19888,0.69953,0.68637,220.43
    21229 
    21230 > view matrix models
    21231 > #16,-0.04727,-0.69298,0.71941,240.08,0.99791,-0.064584,0.0033573,148.34,0.044136,0.71806,0.69458,222.65
    21232 
    21233 > view matrix models
    21234 > #16,0.051124,-0.95987,0.27575,264.74,0.8362,-0.10982,-0.53732,171.16,0.54604,0.25805,0.79703,230.41
    21235 
    21236 > view matrix models
    21237 > #16,-0.032207,-0.89801,0.4388,258.43,0.97887,-0.11705,-0.16769,156.66,0.20195,0.42413,0.8828,227.25
    21238 
    21239 > ui mousemode right "translate selected models"
    21240 
    21241 > view matrix models
    21242 > #16,-0.032207,-0.89801,0.4388,271.7,0.97887,-0.11705,-0.16769,178.4,0.20195,0.42413,0.8828,232.19
    21243 
    21244 > view matrix models
    21245 > #16,-0.032207,-0.89801,0.4388,279.48,0.97887,-0.11705,-0.16769,175.4,0.20195,0.42413,0.8828,232.96
    21246 
    21247 > view matrix models
    21248 > #16,-0.032207,-0.89801,0.4388,279.97,0.97887,-0.11705,-0.16769,174.68,0.20195,0.42413,0.8828,233.54
    21249 
    21250 > view matrix models
    21251 > #16,-0.032207,-0.89801,0.4388,281.76,0.97887,-0.11705,-0.16769,176.48,0.20195,0.42413,0.8828,236.15
    21252 
    21253 > fitmap #16 inMap #2
    21254 
    21255 Fit molecule fold_r_efa_model_4.cif (#16) to map
    21256 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 2009 atoms 
    21257 average map value = 2.45, steps = 332 
    21258 shifted from previous position = 15.2 
    21259 rotated from previous position = 18 degrees 
    21260 atoms outside contour = 1513, contour level = 4.1986 
    21261  
    21262 Position of fold_r_efa_model_4.cif (#16) relative to
    21263 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    21264 Matrix rotation and translation 
    21265 -0.85387889 0.28884792 -0.43296387 203.23398994 
    21266 -0.38173167 -0.91303095 0.14371991 258.33021238 
    21267 -0.35379622 0.28799542 0.88988026 229.56149618 
    21268 Axis 0.20895018 -0.11465629 -0.97118163 
    21269 Axis point 147.78960124 92.95460295 0.00000000 
    21270 Rotation angle (degrees) 159.80361279 
    21271 Shift along axis -210.09931383 
    21272  
    21273 
    21274 > ui mousemode right "rotate selected models"
    21275 
    21276 > ui mousemode right "translate selected models"
    21277 
    21278 > view matrix models
    21279 > #16,0.035438,-0.90119,0.43197,280.31,0.87223,-0.18309,-0.45353,182.15,0.48781,0.39285,0.77956,236.01
    21280 
    21281 > ui mousemode right "rotate selected models"
    21282 
    21283 > view matrix models
    21284 > #16,0.96287,-0.16386,0.21456,231.8,0.26579,0.43588,-0.85986,178.5,0.047371,0.88496,0.46325,232.14
    21285 
    21286 > view matrix models
    21287 > #16,0.97636,-0.039561,0.21252,225.68,0.1942,0.59239,-0.7819,170.12,-0.094962,0.80468,0.58607,235.13
    21288 
    21289 > ui mousemode right "translate selected models"
    21290 
    21291 > view matrix models
    21292 > #16,0.97636,-0.039561,0.21252,241.05,0.1942,0.59239,-0.7819,160.97,-0.094962,0.80468,0.58607,232.24
    21293 
    21294 > view matrix models
    21295 > #16,0.97636,-0.039561,0.21252,239.09,0.1942,0.59239,-0.7819,153.84,-0.094962,0.80468,0.58607,227.71
    21296 
    21297 > ui mousemode right "rotate selected models"
    21298 
    21299 > view matrix models
    21300 > #16,0.99957,0.029211,-0.00019132,242.07,-0.014782,0.50014,-0.86582,165.39,-0.025196,0.86545,0.50036,226.02
    21301 
    21302 > view matrix models
    21303 > #16,0.99914,-0.0013987,0.041338,242.21,0.036869,0.48314,-0.87477,165.35,-0.018749,0.87554,0.48278,225.95
    21304 
    21305 > ui mousemode right "translate selected models"
    21306 
    21307 > view matrix models
    21308 > #16,0.99914,-0.0013987,0.041338,239.13,0.036869,0.48314,-0.87477,156.8,-0.018749,0.87554,0.48278,219.39
    21309 
    21310 > view matrix models
    21311 > #16,0.99914,-0.0013987,0.041338,238.33,0.036869,0.48314,-0.87477,158.77,-0.018749,0.87554,0.48278,224.31
    21312 
    21313 > fitmap #16 inMap #2
    21314 
    21315 Fit molecule fold_r_efa_model_4.cif (#16) to map
    21316 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) using 2009 atoms 
    21317 average map value = 1.777, steps = 1576 
    21318 shifted from previous position = 13.3 
    21319 rotated from previous position = 22.4 degrees 
    21320 atoms outside contour = 1615, contour level = 4.1986 
    21321  
    21322 Position of fold_r_efa_model_4.cif (#16) relative to
    21323 cryosparc_P104_J81_mono_3dot25_map_emready.mrc (#2) coordinates: 
    21324 Matrix rotation and translation 
    21325 -0.29211392 -0.80850120 0.51087697 236.54952839 
    21326 0.95121881 -0.30105129 0.06746032 210.93904096 
    21327 0.09925843 0.50566188 0.85700282 234.47612534 
    21328 Axis 0.23564452 0.22134940 0.94629599 
    21329 Axis point 39.11074645 135.54778532 0.00000000 
    21330 Rotation angle (degrees) 111.59732832 
    21331 Shift along axis 324.31664900 
    21332  
    21333 
    21334 > show #!4 models
    21335 
    21336 > open /Users/lingxiaobin/Desktop/ROOL:GOLLD/fold_r_efa/fold_r_efa_model_0.cif
    21337 
    21338 Chain information for fold_r_efa_model_0.cif #3 
    21339 --- 
    21340 Chain | Description 
    21341 A | . 
    21342  
    21343 
    21344 > hide #!2 models
    21345 
    21346 > hide #3 models
    21347 
    21348 > hide #!4 models
    21349 
    21350 > show #3 models
    21351 
    21352 > hide #16 models
    21353 
    21354 > select #3/A:82
    21355 
    21356 22 atoms, 24 bonds, 1 residue, 1 model selected 
    21357 
    21358 > select up
    21359 
    21360 12448 atoms, 13961 bonds, 580 residues, 1 model selected 
    21361 
    21362 > hide sel target a
    21363 
    21364 > select clear
    21365 
    21366 > select #3/A:316
    21367 
    21368 22 atoms, 24 bonds, 1 residue, 1 model selected 
    21369 
    21370 > select add #3/A:315
    21371 
    21372 45 atoms, 49 bonds, 2 residues, 1 model selected 
    21373 
    21374 > select add #3/A:314
    21375 
    21376 65 atoms, 70 bonds, 3 residues, 1 model selected 
    21377 
    21378 > select add #3/A:317
    21379 
    21380 88 atoms, 95 bonds, 4 residues, 1 model selected 
    21381 
    21382 > select add #3/A:318
    21383 
    21384 110 atoms, 119 bonds, 5 residues, 1 model selected 
    21385 
    21386 > select add #3/A:319
    21387 
    21388 132 atoms, 143 bonds, 6 residues, 1 model selected 
    21389 
    21390 > select add #3/A:320
    21391 
    21392 154 atoms, 167 bonds, 7 residues, 1 model selected 
    21393 
    21394 > select add #3/A:321
    21395 
    21396 174 atoms, 188 bonds, 8 residues, 1 model selected 
    21397 
    21398 > select add #3/A:322
    21399 
    21400 194 atoms, 209 bonds, 9 residues, 1 model selected 
    21401 
    21402 > select add #3/A:323
    21403 
    21404 216 atoms, 233 bonds, 10 residues, 1 model selected 
    21405 
    21406 > select add #3/A:324
    21407 
    21408 239 atoms, 258 bonds, 11 residues, 1 model selected 
    21409 
    21410 > select add #3/A:325
    21411 
    21412 259 atoms, 279 bonds, 12 residues, 1 model selected 
    21413 
    21414 > select add #3/A:326
    21415 
    21416 282 atoms, 304 bonds, 13 residues, 1 model selected 
    21417 
    21418 > select add #3/A:327
    21419 
    21420 302 atoms, 325 bonds, 14 residues, 1 model selected 
    21421 
    21422 > select add #3/A:313
    21423 
    21424 322 atoms, 346 bonds, 15 residues, 1 model selected 
    21425 
    21426 > select add #3/A:312
    21427 
    21428 344 atoms, 370 bonds, 16 residues, 1 model selected 
    21429 
    21430 > select add #3/A:311
    21431 
    21432 366 atoms, 394 bonds, 17 residues, 1 model selected 
    21433 
    21434 > select add #3/A:310
    21435 
    21436 388 atoms, 418 bonds, 18 residues, 1 model selected 
    21437 
    21438 > select add #3/A:309
    21439 
    21440 411 atoms, 443 bonds, 19 residues, 1 model selected 
    21441 
    21442 > select add #3/A:308
    21443 
    21444 433 atoms, 467 bonds, 20 residues, 1 model selected 
    21445 
    21446 > select add #3/A:307
    21447 
    21448 456 atoms, 492 bonds, 21 residues, 1 model selected 
    21449 
    21450 > select add #3/A:306
    21451 
    21452 478 atoms, 516 bonds, 22 residues, 1 model selected 
    21453 
    21454 > select add #3/A:305
    21455 
    21456 498 atoms, 537 bonds, 23 residues, 1 model selected 
    21457 
    21458 > select add #3/A:304
    21459 
    21460 521 atoms, 562 bonds, 24 residues, 1 model selected 
    21461 
    21462 > select add #3/A:328
    21463 
    21464 541 atoms, 583 bonds, 25 residues, 1 model selected 
    21465 
    21466 > select add #3/A:329
    21467 
    21468 561 atoms, 604 bonds, 26 residues, 1 model selected 
    21469 
    21470 > select add #3/A:330
    21471 
    21472 583 atoms, 628 bonds, 27 residues, 1 model selected 
    21473 
    21474 > select add #3/A:331
    21475 
    21476 605 atoms, 652 bonds, 28 residues, 1 model selected 
    21477 
    21478 > select add #3/A:303
    21479 
    21480 625 atoms, 673 bonds, 29 residues, 1 model selected 
    21481 
    21482 > select add #3/A:302
    21483 
    21484 645 atoms, 694 bonds, 30 residues, 1 model selected 
    21485 
    21486 > select add #3/A:332
    21487 
    21488 665 atoms, 715 bonds, 31 residues, 1 model selected 
    21489 
    21490 > select ~sel & ##selected
    21491 
    21492 11783 atoms, 13216 bonds, 549 residues, 1 model selected 
    21493 
    21494 > delete atoms sel
    21495 
    21496 > delete bonds sel
    21497 
    21498 > show #!1 models
    21499 
    21500 > show #!2 models
    21501 
    21502 Drag select of 31 residues 
    21503 
    21504 > view matrix models #3,1,0,0,425.43,0,1,0,261.92,0,0,1,184.97
    21505 
    21506 > view matrix models #3,1,0,0,263.73,0,1,0,204.67,0,0,1,172.86
    21507 
    21508 > view matrix models #3,1,0,0,234.96,0,1,0,208.24,0,0,1,260.94
    21509 
    21510 > hide #!2 models
    21511 
    21512 > ui mousemode right "rotate selected models"
    21513 
    21514 > view matrix models
    21515 > #3,0.95007,0.12676,-0.28513,237.04,0.25787,0.19555,0.94618,203.18,0.1757,-0.97247,0.15309,273.49
    21516 
    21517 > view matrix models
    21518 > #3,0.98818,0.021358,-0.1518,236.21,0.13976,0.28134,0.94938,204.7,0.062983,-0.95937,0.27503,274.65
    21519 
    21520 > ui mousemode right "translate selected models"
    21521 
    21522 > view matrix models
    21523 > #3,0.98818,0.021358,-0.1518,236.44,0.13976,0.28134,0.94938,204.11,0.062983,-0.95937,0.27503,268.22
    21524 
    21525 > view matrix models
    21526 > #3,0.98818,0.021358,-0.1518,235.79,0.13976,0.28134,0.94938,202.04,0.062983,-0.95937,0.27503,271.25
    21527 
    21528 > view matrix models
    21529 > #3,0.98818,0.021358,-0.1518,232.75,0.13976,0.28134,0.94938,199.89,0.062983,-0.95937,0.27503,271.76
    21530 
    21531 > view matrix models
    21532 > #3,0.98818,0.021358,-0.1518,231.61,0.13976,0.28134,0.94938,197.24,0.062983,-0.95937,0.27503,267.58
    21533 
    21534 > view matrix models
    21535 > #3,0.98818,0.021358,-0.1518,231.54,0.13976,0.28134,0.94938,195.82,0.062983,-0.95937,0.27503,269.63
    21536 
    21537 > view matrix models
    21538 > #3,0.98818,0.021358,-0.1518,230.54,0.13976,0.28134,0.94938,196.01,0.062983,-0.95937,0.27503,269.38
    21539 
    21540 > show #!4 models
    21541 
    21542 > ui mousemode right "rotate selected models"
    21543 
    21544 > view matrix models
    21545 > #3,0.9814,-0.19071,-0.021936,231.67,0.19156,0.98031,0.047832,195.51,0.012382,-0.051144,0.99861,255.91
    21546 
    21547 > view matrix models
    21548 > #3,0.89146,-0.40623,-0.20071,236.97,0.30006,0.86118,-0.41028,198.14,0.33951,0.30552,0.8896,246.81
    21549 
    21550 > view matrix models
    21551 > #3,0.83044,-0.55618,-0.032333,238.28,0.50696,0.77846,-0.37013,194.45,0.23103,0.29097,0.92842,248.81
    21552 
    21553 > view matrix models
    21554 > #3,0.73859,-0.67207,0.053017,240.55,0.45709,0.44141,-0.77216,201.89,0.49554,0.59454,0.63321,242.96
    21555 
    21556 > view matrix models
    21557 > #3,0.55968,-0.81236,0.16383,244.6,0.30112,0.015164,-0.95347,210.56,0.77207,0.58296,0.2531,240.56
    21558 
    21559 > view matrix models
    21560 > #3,0.52214,-0.8343,0.17698,245.45,0.29761,-0.016234,-0.95455,210.94,0.79925,0.55107,0.23982,240.43
    21561 
    21562 > ui mousemode right "translate selected models"
    21563 
    21564 > view matrix models
    21565 > #3,0.52214,-0.8343,0.17698,247.06,0.29761,-0.016234,-0.95455,199.79,0.79925,0.55107,0.23982,245.71
    21566 
    21567 > ui mousemode right "rotate selected models"
    21568 
    21569 > view matrix models
    21570 > #3,0.46115,-0.74271,0.48551,244.94,0.88307,0.33064,-0.33297,179.74,0.086766,0.58229,0.80834,255.17
    21571 
    21572 > view matrix models
    21573 > #3,0.40622,-0.62472,0.66686,243.46,0.80782,-0.095581,-0.58163,187.32,0.4271,0.77497,0.46584,249.23
    21574 
    21575 > view matrix models
    21576 > #3,0.43377,-0.59001,0.68098,242.46,0.79212,-0.11047,-0.60028,187.92,0.4294,0.7998,0.41944,249.32
    21577 
    21578 > ui mousemode right "translate selected models"
    21579 
    21580 > view matrix models
    21581 > #3,0.43377,-0.59001,0.68098,248.87,0.79212,-0.11047,-0.60028,200.85,0.4294,0.7998,0.41944,245.94
    21582 
    21583 > view matrix models
    21584 > #3,0.43377,-0.59001,0.68098,248.18,0.79212,-0.11047,-0.60028,202.57,0.4294,0.7998,0.41944,247.23
    21585 
    21586 > ui mousemode right "rotate selected models"
    21587 
    21588 > view matrix models
    21589 > #3,0.041019,-0.9732,0.22626,263.37,0.56198,-0.16477,-0.81057,209.39,0.82613,0.16041,0.54016,244.4
    21590 
    21591 > view matrix models
    21592 > #3,0.10041,-0.93943,0.32771,261.04,0.54523,-0.22357,-0.80793,210.27,0.83225,0.2598,0.48975,243.74
    21593 
    21594 > ui mousemode right "translate selected models"
    21595 
    21596 > view matrix models
    21597 > #3,0.10041,-0.93943,0.32771,259.33,0.54523,-0.22357,-0.80793,209.62,0.83225,0.2598,0.48975,242.28
    21598 
    21599 > view matrix models
    21600 > #3,0.10041,-0.93943,0.32771,249.88,0.54523,-0.22357,-0.80793,205.14,0.83225,0.2598,0.48975,253.56
    21601 
    21602 > select #3/A:332
    21603 
    21604 20 atoms, 21 bonds, 1 residue, 1 model selected 
    21605 
    21606 > select add #3/A:331
    21607 
    21608 42 atoms, 45 bonds, 2 residues, 1 model selected 
    21609 
    21610 > delete atoms sel
    21611 
    21612 > delete bonds sel
    21613 
    21614 > select add #3/A:302
    21615 
    21616 20 atoms, 21 bonds, 1 residue, 1 model selected 
    21617 
    21618 > select add #3/A:303
    21619 
    21620 40 atoms, 42 bonds, 2 residues, 1 model selected 
    21621 
    21622 > delete atoms sel
    21623 
    21624 > delete bonds sel
    21625 
    21626 > select #3/A:308
    21627 
    21628 22 atoms, 24 bonds, 1 residue, 1 model selected 
    21629 
    21630 > ui mousemode right "rotate selected models"
    21631 
    21632 > view matrix models
    21633 > #3,0.69992,-0.71388,-0.022168,236.39,0.63159,0.63314,-0.44746,191.99,0.33346,0.29918,0.89403,261.7
    21634 
    21635 > ui mousemode right "translate selected models"
    21636 
    21637 > view matrix models
    21638 > #3,0.69992,-0.71388,-0.022168,242.2,0.63159,0.63314,-0.44746,194.31,0.33346,0.29918,0.89403,252.7
    21639 
    21640 > view matrix models
    21641 > #3,0.69992,-0.71388,-0.022168,240.42,0.63159,0.63314,-0.44746,190.6,0.33346,0.29918,0.89403,250.33
    21642 
    21643 > view matrix models
    21644 > #3,0.69992,-0.71388,-0.022168,239.48,0.63159,0.63314,-0.44746,186.69,0.33346,0.29918,0.89403,252.53
    21645 
    21646 > ui mousemode right "rotate selected models"
    21647 
    21648 > view matrix models
    21649 > #3,0.80906,-0.56013,0.17796,233.81,0.58383,0.7312,-0.35282,186.11,0.067498,0.38935,0.91861,257.76
    21650 
    21651 > ui mousemode right "translate selected models"
    21652 
    21653 > view matrix models
    21654 > #3,0.80906,-0.56013,0.17796,235.82,0.58383,0.7312,-0.35282,192.73,0.067498,0.38935,0.91861,252.36
    21655 
    21656 > ui mousemode right "rotate selected models"
    21657 
    21658 > ui mousemode right "translate selected models"
    21659 
    21660 > view matrix models
    21661 > #3,0.80906,-0.56013,0.17796,235.24,0.58383,0.7312,-0.35282,189.3,0.067498,0.38935,0.91861,254.84
    21662 
    21663 > ui mousemode right "rotate selected models"
    21664 
    21665 > view matrix models
    21666 > #3,0.52206,-0.83489,0.17439,244.68,0.81629,0.42983,-0.38591,186.96,0.24723,0.34382,0.90591,251.13
    21667 
    21668 > view matrix models
    21669 > #3,0.53846,-0.84262,0.0067461,245.72,0.76916,0.48822,-0.41236,187.73,0.34417,0.22723,0.91099,249.91
    21670 
    21671 > view matrix models
    21672 > #3,0.6939,-0.71988,0.016399,240.8,0.60895,0.57451,-0.54692,191.78,0.3843,0.3895,0.83702,248.01
    21673 
    21674 > ui mousemode right "translate selected models"
    21675 
    21676 > view matrix models
    21677 > #3,0.6939,-0.71988,0.016399,237.47,0.60895,0.57451,-0.54692,188.21,0.3843,0.3895,0.83702,249.52
    21678 
    21679 > view matrix models
    21680 > #3,0.6939,-0.71988,0.016399,239.83,0.60895,0.57451,-0.54692,188.39,0.3843,0.3895,0.83702,252.79
    21681 
    21682 > view matrix models
    21683 > #3,0.6939,-0.71988,0.016399,240.74,0.60895,0.57451,-0.54692,188.11,0.3843,0.3895,0.83702,255.07
    21684 
    21685 > show #16 models
    21686 
    21687 > combine #3 #4 #16
    21688 
    21689 Remapping chain ID 'A' in combination #4 to 'N' 
    21690 Remapping chain ID 'A' in fold_r_efa_model_4.cif #16 to 'O' 
    21691 
    21692 > hide #!4 models
    21693 
    21694 > hide #3 models
    21695 
    21696 > hide #16 models
    21697 
    21698 > hide #!5 models
    21699 
    21700 > show #!5 models
    21701 
    21702 > save /Users/lingxiaobin/Desktop/ROOL:GOLLD/map/R13.pdb models #5 relModel #2
    21703 
    21704 > hide #!5 models
    21705 
    21706 > show #!5 models
    21707 
    21708 > show #16 models
    21709 
    21710 > hide #16 models
    21711 
    21712 > view matrix models
    21713 > #3,0.6939,-0.71988,0.016399,282.23,0.60895,0.57451,-0.54692,160.01,0.3843,0.3895,0.83702,256.29
    21714 
    21715 > view matrix models
    21716 > #3,0.6939,-0.71988,0.016399,281.69,0.60895,0.57451,-0.54692,160.36,0.3843,0.3895,0.83702,256.01
    21717 
    21718 > view matrix models
    21719 > #3,0.6939,-0.71988,0.016399,285.44,0.60895,0.57451,-0.54692,156.69,0.3843,0.3895,0.83702,255.17
    21720 
    21721 > select #5/O:417
    21722 
    21723 22 atoms, 24 bonds, 1 residue, 1 model selected 
    21724 
    21725 > select add #5/O:416
    21726 
    21727 45 atoms, 49 bonds, 2 residues, 1 model selected 
    21728 
    21729 > select add #5/O:415
    21730 
    21731 65 atoms, 70 bonds, 3 residues, 1 model selected 
    21732 
    21733 > select add #5/O:414
    21734 
    21735 85 atoms, 92 bonds, 4 residues, 1 model selected 
    21736 
    21737 > view matrix models
    21738 > #5,0.6939,-0.71988,0.016399,248.88,0.60895,0.57451,-0.54692,179.8,0.3843,0.3895,0.83702,256.2
    21739 
    21740 > select add #5/O:364
    21741 
    21742 105 atoms, 113 bonds, 5 residues, 1 model selected 
    21743 
    21744 > select add #5/O:365
    21745 
    21746 127 atoms, 137 bonds, 6 residues, 1 model selected 
    21747 
    21748 > select add #5/O:366
    21749 
    21750 149 atoms, 161 bonds, 7 residues, 1 model selected 
    21751 
    21752 > select add #5/O:367
    21753 
    21754 169 atoms, 182 bonds, 8 residues, 1 model selected 
    21755 
    21756 > select add #5/O:369
    21757 
    21758 189 atoms, 203 bonds, 9 residues, 1 model selected 
    21759 
    21760 > select add #5/O:368
    21761 
    21762 209 atoms, 224 bonds, 10 residues, 1 model selected 
    21763 
    21764 > select add #5/O:370
    21765 
    21766 231 atoms, 248 bonds, 11 residues, 1 model selected 
    21767 
    21768 > select add #5/O:371
    21769 
    21770 251 atoms, 269 bonds, 12 residues, 1 model selected 
    21771 
    21772 > select add #5/O:372
    21773 
    21774 271 atoms, 290 bonds, 13 residues, 1 model selected 
    21775 
    21776 > select add #5/O:413
    21777 
    21778 294 atoms, 314 bonds, 14 residues, 1 model selected 
    21779 
    21780 > select add #5/O:412
    21781 
    21782 314 atoms, 335 bonds, 15 residues, 1 model selected 
    21783 
    21784 > select add #5/O:411
    21785 
    21786 336 atoms, 359 bonds, 16 residues, 1 model selected 
    21787 
    21788 > select add #5/O:410
    21789 
    21790 358 atoms, 383 bonds, 17 residues, 1 model selected 
    21791 
    21792 > select add #5/O:409
    21793 
    21794 380 atoms, 407 bonds, 18 residues, 1 model selected 
    21795 
    21796 > select add #5/O:408
    21797 
    21798 400 atoms, 428 bonds, 19 residues, 1 model selected 
    21799 
    21800 > select add #5/O:373
    21801 
    21802 420 atoms, 449 bonds, 20 residues, 1 model selected 
    21803 
    21804 > select add #5/O:407
    21805 
    21806 443 atoms, 474 bonds, 21 residues, 1 model selected 
    21807 
    21808 > view matrix models
    21809 > #5,0.6939,-0.71988,0.016399,237.22,0.60895,0.57451,-0.54692,189.07,0.3843,0.3895,0.83702,237.3
    21810 
    21811 > select add #5/O:374
    21812 
    21813 465 atoms, 498 bonds, 22 residues, 1 model selected 
    21814 
    21815 > select add #5/O:375
    21816 
    21817 485 atoms, 519 bonds, 23 residues, 1 model selected 
    21818 
    21819 > select add #5/O:376
    21820 
    21821 507 atoms, 543 bonds, 24 residues, 1 model selected 
    21822 
    21823 > select add #5/O:377
    21824 
    21825 530 atoms, 568 bonds, 25 residues, 1 model selected 
    21826 
    21827 > select add #5/O:378
    21828 
    21829 552 atoms, 592 bonds, 26 residues, 1 model selected 
    21830 
    21831 > select add #5/O:406
    21832 
    21833 572 atoms, 613 bonds, 27 residues, 1 model selected 
    21834 
    21835 > select add #5/O:405
    21836 
    21837 594 atoms, 637 bonds, 28 residues, 1 model selected 
    21838 
    21839 > select add #5/O:404
    21840 
    21841 614 atoms, 658 bonds, 29 residues, 1 model selected 
    21842 
    21843 > select add #5/O:403
    21844 
    21845 634 atoms, 679 bonds, 30 residues, 1 model selected 
    21846 
    21847 > select add #5/O:402
    21848 
    21849 654 atoms, 700 bonds, 31 residues, 1 model selected 
    21850 
    21851 > select add #5/O:401
    21852 
    21853 674 atoms, 721 bonds, 32 residues, 1 model selected 
    21854 
    21855 > select add #5/O:400
    21856 
    21857 694 atoms, 742 bonds, 33 residues, 1 model selected 
    21858 
    21859 > select add #5/O:399
    21860 
    21861 716 atoms, 766 bonds, 34 residues, 1 model selected 
    21862 
    21863 > select add #5/O:379
    21864 
    21865 736 atoms, 787 bonds, 35 residues, 1 model selected 
    21866 
    21867 > select add #5/O:380
    21868 
    21869 759 atoms, 812 bonds, 36 residues, 1 model selected 
    21870 
    21871 > select add #5/O:381
    21872 
    21873 781 atoms, 836 bonds, 37 residues, 1 model selected 
    21874 
    21875 > select add #5/O:398
    21876 
    21877 804 atoms, 861 bonds, 38 residues, 1 model selected 
    21878 
    21879 > select add #5/O:382
    21880 
    21881 824 atoms, 882 bonds, 39 residues, 1 model selected 
    21882 
    21883 > select add #5/O:383
    21884 
    21885 846 atoms, 906 bonds, 40 residues, 1 model selected 
    21886 
    21887 > select add #5/O:384
    21888 
    21889 868 atoms, 930 bonds, 41 residues, 1 model selected 
    21890 
    21891 > select add #5/O:385
    21892 
    21893 890 atoms, 954 bonds, 42 residues, 1 model selected 
    21894 
    21895 > select add #5/O:386
    21896 
    21897 910 atoms, 975 bonds, 43 residues, 1 model selected 
    21898 
    21899 > select add #5/O:387
    21900 
    21901 932 atoms, 999 bonds, 44 residues, 1 model selected 
    21902 
    21903 > select add #5/O:388
    21904 
    21905 954 atoms, 1023 bonds, 45 residues, 1 model selected 
    21906 
    21907 > select add #5/O:389
    21908 
    21909 974 atoms, 1044 bonds, 46 residues, 1 model selected 
    21910 
    21911 > select add #5/O:390
    21912 
    21913 996 atoms, 1068 bonds, 47 residues, 1 model selected 
    21914 
    21915 > select add #5/O:391
    21916 
    21917 1018 atoms, 1092 bonds, 48 residues, 1 model selected 
    21918 
    21919 > select add #5/O:392
    21920 
    21921 1040 atoms, 1116 bonds, 49 residues, 1 model selected 
    21922 
    21923 > select add #5/O:393
    21924 
    21925 1062 atoms, 1140 bonds, 50 residues, 1 model selected 
    21926 
    21927 > select add #5/O:394
    21928 
    21929 1084 atoms, 1164 bonds, 51 residues, 1 model selected 
     2281[deleted to fit within ticket limits]
    219302282
    219312283> select add #5/O:395