Changes between Initial Version and Version 1 of Ticket #14963, comment 2


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Timestamp:
Apr 12, 2024, 12:48:03 PM (19 months ago)
Author:
Tom Goddard

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  • Ticket #14963, comment 2

    initial v1  
    1 {{{
     1
    22Thank you for responding.
    33
    44Yes I downloaded the latest version of ChimeraX_Daily.  And also logged into Google in the AlphaFold run window.  I have used ChimerX AlphaFold predictions successfully in the past (for several dozen pairwise interactions) without any trouble, but not over the last about 3 months.
    55
    6 
    7 ——
    8 Danesh Moazed
    9 Harvard Medical School/HHMI
    10 danesh@hms.harvard.edu
    11 
    12 
    13 
    14 
    15 
    16 On Apr 12, 2024, at 3:07 PM, ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu> wrote:
    17 
    18 #14963: Alphafold prediction send sequence to Google Colab returned: None
    19 -------------------------------------------+-------------------------
    20          Reporter:  danesh_moazed@…       |      Owner:  Tom Goddard
    21              Type:  defect                |     Status:  assigned
    22          Priority:  normal                |  Milestone:
    23         Component:  Structure Prediction  |    Version:
    24        Resolution:                        |   Keywords:
    25        Blocked By:                        |   Blocking:
    26 Notify when closed:                        |   Platform:  all
    27           Project:  ChimeraX              |
    28 -------------------------------------------+-------------------------
    29 Changes (by Tom Goddard):
    30 
    31 * component:  Unassigned => Structure Prediction
    32 * owner:  (none) => Tom Goddard
    33 * platform:   => all
    34 * project:   => ChimeraX
    35 * status:  new => assigned
    36 * summary:  AlphaFold not working => Alphafold prediction send sequence to
    37     Google Colab returned: None
    38 
    39 Comment:
    40 
    41 Are you using a current ChimeraX daily build?  It would be best to use
    42 menu Help / Report a Bug so we get your ChimeraX version, operating
    43 system, and other details.
    44 
    45 I just tried AlphaFold prediction and got no errors.
    46 
    47 The error message you get means when ChimeraX tried to send the sequence
    48 to predict to the Google Colab virtual machine it failed.  I'm not sure
    49 why that would happen.  Did you log into Google in the AlphaFold Run
    50 window?  Have you used ChimeraX AlphaFold prediction successfully in the
    51 past?
    52 --
    53 Ticket URL: <https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/14963#comment:1>
    54 ChimeraX <https://www.rbvi.ucsf.edu/chimerax/>
    55 ChimeraX Issue Tracker
    56 }}}