Changes between Initial Version and Version 1 of Ticket #14383


Ignore:
Timestamp:
Jan 16, 2024, 2:26:13 PM (21 months ago)
Author:
pett
Comment:

Legend:

Unmodified
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Removed
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  • Ticket #14383

    • Property Cc Tom Goddard Greg Couch added
    • Property Component Unassigned → Core
    • Property Owner set to pett
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → accepted
    • Property Summary ChimeraX bug report submission → Crash in garbage collection while restoring session

  • Ticket #14383 – Description

    initial v1  
    20052005© 2016-2023 Regents of the University of California. All rights reserved. 
    20062006
    2007 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2008 > MRCLaboratoryofMolecularBiology/Documents/Carter
    2009 > Lab/Diorge/Membranes/Fit14-10.cxs" format session
    2010 
    2011 Opened post266.mrc as #1, grid size 274,274,274, pixel 1.51, shown at level
    2012 0.0195, step 1, values float32 
    2013 Opened post266flipy.mrc as #3, grid size 274,274,274, pixel 1.51, shown at
    2014 level 0.0174, step 1, values float32 
    2015 Opened post266flipy.mrc as #4, grid size 274,274,274, pixel 1.51, shown at
    2016 level 0.0209, step 1, values float32 
    2017 Opened post266flipy.mrc copy as #6, grid size 274,274,274, pixel 1.51, shown
    2018 at level 0.0176, step 1, values float32 
    2019 Opened postprocess_masked330.mrc as #5, grid size 274,274,274, pixel 1.51,
    2020 shown at level 0.0104, step 2, values float32 
    2021 Opened postprocess_masked330.mrc y flip as #7, grid size 274,274,274, pixel
    2022 1.51, shown at level 0.0185, step 1, values float32 
    2023 Opened postprocess_masked330_onepf.mrc as #8, grid size 274,274,274, pixel
    2024 1.51, shown at level 0.0135, step 1, values float32 
    2025 Opened postprocess_masked330.mrc y flip copy as #2.1.1.1, grid size
    2026 274,274,274, pixel 1.51, shown at level 0.0202, step 1, values float32 
    2027 Log from Tue Jan 9 11:58:46 2024UCSF ChimeraX version: 1.6.1 (2023-05-09) 
    2028 © 2016-2023 Regents of the University of California. All rights reserved. 
    2029 
    2030 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2031 > MRCLaboratoryofMolecularBiology/Documents/Carter
    2032 > Lab/Diorge/Membranes/Fit14-9.cxs" format session
    2033 
    2034 Opened post266.mrc as #1, grid size 274,274,274, pixel 1.51, shown at level
    2035 0.0195, step 1, values float32 
    2036 Opened post266flipy.mrc as #3, grid size 274,274,274, pixel 1.51, shown at
    2037 level 0.0174, step 1, values float32 
    2038 Opened post266flipy.mrc as #4, grid size 274,274,274, pixel 1.51, shown at
    2039 level 0.0209, step 1, values float32 
    2040 Opened post266flipy.mrc copy as #6, grid size 274,274,274, pixel 1.51, shown
    2041 at level 0.0176, step 1, values float32 
    2042 Opened postprocess_masked330.mrc as #5, grid size 274,274,274, pixel 1.51,
    2043 shown at level 0.0104, step 2, values float32 
    2044 Opened postprocess_masked330.mrc y flip as #7, grid size 274,274,274, pixel
    2045 1.51, shown at level 0.0185, step 1, values float32 
    2046 Opened postprocess_masked330_onepf.mrc as #8, grid size 274,274,274, pixel
    2047 1.51, shown at level 0.0135, step 1, values float32 
    2048 Opened postprocess_masked330.mrc y flip copy as #2.1.1.1, grid size
    2049 274,274,274, pixel 1.51, shown at level 0.0202, step 1, values float32 
    2050 Log from Mon Jan 8 19:50:54 2024UCSF ChimeraX version: 1.6.1 (2023-05-09) 
    2051 © 2016-2023 Regents of the University of California. All rights reserved. 
    2052 
    2053 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2054 > MRCLaboratoryofMolecularBiology/Documents/Carter
    2055 > Lab/Diorge/Membranes/Fit14-3.cxs" format session
    2056 
    2057 Opened post266.mrc as #1, grid size 274,274,274, pixel 1.51, shown at level
    2058 0.0195, step 1, values float32 
    2059 Opened post266flipy.mrc as #3, grid size 274,274,274, pixel 1.51, shown at
    2060 level 0.0174, step 1, values float32 
    2061 Opened post266flipy.mrc as #4, grid size 274,274,274, pixel 1.51, shown at
    2062 level 0.0209, step 1, values float32 
    2063 Opened post266flipy.mrc copy as #6, grid size 274,274,274, pixel 1.51, shown
    2064 at level 0.0227, step 1, values float32 
    2065 Opened postprocess_masked330.mrc as #5, grid size 274,274,274, pixel 1.51,
    2066 shown at level 0.0104, step 2, values float32 
    2067 Opened postprocess_masked330.mrc y flip as #7, grid size 274,274,274, pixel
    2068 1.51, shown at level 0.0185, step 1, values float32 
    2069 Opened postprocess_masked330.mrc y flip copy as #9, grid size 274,274,274,
    2070 pixel 1.51, shown at level 0.0185, step 1, values float32 
    2071 Opened postprocess_masked330_onepf.mrc as #8, grid size 274,274,274, pixel
    2072 1.51, shown at level 0.0183, step 1, values float32 
    2073 Log from Mon Jan 8 14:05:26 2024UCSF ChimeraX version: 1.6.1 (2023-05-09) 
    2074 © 2016-2023 Regents of the University of California. All rights reserved. 
    2075 
    2076 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2077 > MRCLaboratoryofMolecularBiology/Documents/Carter
    2078 > Lab/Diorge/Membranes/Fit14-2.cxs" format session
    2079 
    2080 Opened post266.mrc as #1, grid size 274,274,274, pixel 1.51, shown at level
    2081 0.0195, step 1, values float32 
    2082 Opened post266flipy.mrc as #3, grid size 274,274,274, pixel 1.51, shown at
    2083 level 0.0174, step 1, values float32 
    2084 Opened post266flipy.mrc as #4, grid size 274,274,274, pixel 1.51, shown at
    2085 level 0.0209, step 1, values float32 
    2086 Opened post266flipy.mrc copy as #6, grid size 274,274,274, pixel 1.51, shown
    2087 at level 0.0227, step 1, values float32 
    2088 Opened postprocess_masked330.mrc as #5, grid size 274,274,274, pixel 1.51,
    2089 shown at level 0.0104, step 2, values float32 
    2090 Opened postprocess_masked330.mrc y flip as #7, grid size 274,274,274, pixel
    2091 1.51, shown at level 0.0185, step 1, values float32 
    2092 Opened postprocess_masked330.mrc y flip copy as #9, grid size 274,274,274,
    2093 pixel 1.51, shown at level 0.0185, step 1, values float32 
    2094 Log from Mon Jan 8 13:30:47 2024UCSF ChimeraX version: 1.6.1 (2023-05-09) 
    2095 © 2016-2023 Regents of the University of California. All rights reserved. 
    2096 
    2097 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2098 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/Newestfit.cxs"
    2099 
    2100 Opened post266.mrc as #1, grid size 274,274,274, pixel 1.51, shown at level
    2101 0.0195, step 1, values float32 
    2102 Opened post266flipy.mrc as #3, grid size 274,274,274, pixel 1.51, shown at
    2103 level 0.0174, step 1, values float32 
    2104 Opened post266flipy.mrc as #4, grid size 274,274,274, pixel 1.51, shown at
    2105 level 0.0209, step 1, values float32 
    2106 Opened post266flipy.mrc copy as #6, grid size 274,274,274, pixel 1.51, shown
    2107 at level 0.0227, step 1, values float32 
    2108 Log from Fri Dec 8 07:24:24 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) 
    2109 © 2016-2023 Regents of the University of California. All rights reserved. 
    2110 How to cite UCSF ChimeraX 
    2111 
    2112 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2113 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Chimera
    2114 > Sessions/CC2folds/CC2/Fip3/fip3cc2-clip28HCnterm-moreCterm-
    2115 > withWD/fip3cc2clip28HCntermmoreCtermwithWD_2760c_unrelaxed_rank_1_model_4.pdb"
    2116 
    2117 Chain information for
    2118 fip3cc2clip28HCntermmoreCtermwithWD_2760c_unrelaxed_rank_1_model_4.pdb #1 
    2119 --- 
    2120 Chain | Description 
    2121 B | No description available 
    2122 C | No description available 
    2123 D E | No description available 
    2124  
    2125 
    2126 > preset custom pretty-chain
    2127 
    2128 Using preset: Custom / Pretty-chain 
    2129 Preset expands to these ChimeraX commands:
    2130 
    2131    
    2132    
    2133     lighting soft
    2134     set bgColor white
    2135     cartoon style coil width 1.5 thickness 0.8
    2136     cartoon style helix xsection round width 3 thickness 0.8
    2137     cartoon style strand xsection round width 3 thickness 0.8
    2138     cartoon style strand arrowscale 1
    2139     cartoon style helix xsection oval sides 10
    2140     graphics silhouettes true
    2141     graphics silhouettes width 1.5
    2142     graphics silhouettes depthJump 0.003
    2143     lighting msDepthBias 0.004
    2144     lighting shadows true intensity 0.06
    2145     lighting depthCueColor #000000
    2146     color bychain
    2147 
    2148  
    2149 
    2150 > hide atoms
    2151 
    2152 > show atoms
    2153 
    2154 > coulombic
    2155 
    2156 Using Amber 20 recommended default charges and atom types for standard
    2157 residues 
    2158 Coulombic values for
    2159 fip3cc2clip28HCntermmoreCtermwithWD_2760c_unrelaxed_rank_1_model_4.pdb_B SES
    2160 surface #1.1: minimum, -16.62, mean 0.21, maximum 13.62 
    2161 Coulombic values for
    2162 fip3cc2clip28HCntermmoreCtermwithWD_2760c_unrelaxed_rank_1_model_4.pdb_C SES
    2163 surface #1.2: minimum, -15.85, mean -2.58, maximum 9.11 
    2164 Coulombic values for
    2165 fip3cc2clip28HCntermmoreCtermwithWD_2760c_unrelaxed_rank_1_model_4.pdb_D SES
    2166 surface #1.3: minimum, -23.74, mean -3.35, maximum 9.88 
    2167 Coulombic values for
    2168 fip3cc2clip28HCntermmoreCtermwithWD_2760c_unrelaxed_rank_1_model_4.pdb_E SES
    2169 surface #1.4: minimum, -21.78, mean -3.20, maximum 7.16 
    2170 To also show corresponding color key, enter the above coulombic command and
    2171 add key true 
    2172 
    2173 > mlp
    2174 
    2175 Map values for surface
    2176 "fip3cc2clip28HCntermmoreCtermwithWD_2760c_unrelaxed_rank_1_model_4.pdb_B SES
    2177 surface": minimum -25.75, mean -3.686, maximum 23.3 
    2178 Map values for surface
    2179 "fip3cc2clip28HCntermmoreCtermwithWD_2760c_unrelaxed_rank_1_model_4.pdb_C SES
    2180 surface": minimum -29.33, mean -5.431, maximum 22.76 
    2181 Map values for surface
    2182 "fip3cc2clip28HCntermmoreCtermwithWD_2760c_unrelaxed_rank_1_model_4.pdb_D SES
    2183 surface": minimum -24.59, mean -4.072, maximum 21.66 
    2184 Map values for surface
    2185 "fip3cc2clip28HCntermmoreCtermwithWD_2760c_unrelaxed_rank_1_model_4.pdb_E SES
    2186 surface": minimum -24.06, mean -4.05, maximum 21.47 
    2187 To also show corresponding color key, enter the above mlp command and add key
    2188 true 
    2189 
    2190 > hide surfaces
    2191 
    2192 > color byhetero
    2193 
    2194 > select /B:224
    2195 
    2196 12 atoms, 12 bonds, 1 residue, 1 model selected 
    2197 
    2198 > select clear
    2199 
    2200 > hide surfaces
    2201 
    2202 > hide atoms
    2203 
    2204 > show atoms
    2205 
    2206 > hide cartoons
    2207 
    2208 [Repeated 1 time(s)]
    2209 
    2210 > select /E:37@OE1
    2211 
    2212 1 atom, 1 residue, 1 model selected 
    2213 
    2214 > select /E:37@NE2
    2215 
    2216 1 atom, 1 residue, 1 model selected 
    2217 
    2218 > select add /B:224@O
    2219 
    2220 2 atoms, 2 residues, 2 models selected 
    2221 
    2222 > ui tool show Distances
    2223 
    2224 > distance /E:37@NE2 /B:224@O
    2225 
    2226 Distance between /E GLN 37 NE2 and /B TYR 224 O: 4.207Å 
    2227 
    2228 > select /D:38@CE1
    2229 
    2230 1 atom, 1 residue, 1 model selected 
    2231 
    2232 > select add /B:224@CA
    2233 
    2234 2 atoms, 2 residues, 2 models selected 
    2235 
    2236 > distance /D:38@CE1 /B:224@CA
    2237 
    2238 Distance between /D HIS 38 CE1 and /B TYR 224 CA: 3.770Å 
    2239 
    2240 > select /E:30@OD1
    2241 
    2242 1 atom, 1 residue, 1 model selected 
    2243 
    2244 > select add /B:225@NZ
    2245 
    2246 2 atoms, 2 residues, 2 models selected 
    2247 
    2248 > distance /E:30@OD1 /B:225@NZ
    2249 
    2250 Distance between /E ASP 30 OD1 and /B LYS 225 NZ: 5.064Å 
    2251 
    2252 > select /D:38@CE1
    2253 
    2254 1 atom, 1 residue, 1 model selected 
    2255 
    2256 > select add /B:224@CA
    2257 
    2258 2 atoms, 2 residues, 2 models selected 
    2259 
    2260 > cofr sel
    2261 
    2262 > select /B:224@CB
    2263 
    2264 1 atom, 1 residue, 1 model selected 
    2265 
    2266 > select add /D:38@CE1
    2267 
    2268 2 atoms, 2 residues, 2 models selected 
    2269 
    2270 > distance /B:224@CB /D:38@CE1
    2271 
    2272 Distance between /B TYR 224 CB and /D HIS 38 CE1: 3.613Å 
    2273 
    2274 > select clear
    2275 
    2276 > ui mousemode right zoom
    2277 
    2278 > select clear
    2279 
    2280 > show cartoons
    2281 
    2282 [Repeated 1 time(s)]
    2283 
    2284 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2285 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Kashish/DDJL.pdb"
    2286 
    2287 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    2288 MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Kashish/DDJL.pdb 
    2289 --- 
    2290 warnings | Start residue of secondary structure not found: HELIX 57 57 PRO V 4
    2291 ASP V 8 1 5 
    2292 Start residue of secondary structure not found: HELIX 58 58 PRO V 52 LYS V 58
    2293 1 7 
    2294 Start residue of secondary structure not found: HELIX 117 117 CYS T 742 PHE T
    2295 770 1 29 
    2296 Start residue of secondary structure not found: HELIX 120 120 PRO T 821 ILE T
    2297 852 1 32 
    2298 Start residue of secondary structure not found: HELIX 124 124 LEU T 1099 LYS T
    2299 1120 1 22 
    2300 5 messages similar to the above omitted 
    2301 End residue of secondary structure not found: HELIX 130 130 GLN T 1274 HIS T
    2302 1281 1 8 
    2303 Start residue of secondary structure not found: HELIX 131 131 ASP T 1282 LEU T
    2304 1284 1 3 
    2305 Start residue of secondary structure not found: HELIX 176 176 CYS S 742 PHE S
    2306 770 1 29 
    2307 Start residue of secondary structure not found: HELIX 178 178 PRO S 821 ILE S
    2308 852 1 32 
    2309 Start residue of secondary structure not found: HELIX 182 182 PRO S 1096 LYS S
    2310 1138 1 43 
    2311 Start residue of secondary structure not found: HELIX 183 183 SER S 1140 PRO S
    2312 1142 1 3 
    2313 20 messages similar to the above omitted 
    2314 End residue of secondary structure not found: SHEET 157 15715 TYR o 327 CYS o
    2315 331 0 
    2316 Start residue of secondary structure not found: SHEET 158 15815 VAL o 335 PHE
    2317 o 340 0 
    2318 Start residue of secondary structure not found: SHEET 159 15915 LEU o 347 THR
    2319 o 352 0 
    2320 Start residue of secondary structure not found: SHEET 160 16016 ILE o 357 ASP
    2321 o 361 0 
    2322 Start residue of secondary structure not found: SHEET 161 16116 VAL o 384 GLY
    2323 o 391 0 
    2324 Start residue of secondary structure not found: SHEET 162 16216 HIS o 396 SER
    2325 o 402 0 
    2326 14 messages similar to the above omitted 
    2327 End residue of secondary structure not found: SHEET 177 17717 GLU o 584 GLY o
    2328 588 0 
    2329 Start residue of secondary structure not found: SHEET 178 17817 ILE o 594 VAL
    2330 o 599 0 
    2331 Start residue of secondary structure not found: SHEET 253 25325 LEU h 265 PHE
    2332 h 271 0 
    2333 Start residue of secondary structure not found: SHEET 254 25425 LEU h 285 TRP
    2334 h 287 0 
    2335 Start residue of secondary structure not found: SHEET 255 25525 LEU h 294 TYR
    2336 h 299 0 
    2337 Start residue of secondary structure not found: SHEET 256 25625 GLY h 311 ASN
    2338 h 317 0 
    2339 End residue of secondary structure not found: SHEET 257 25725 TYR h 327 CYS h
    2340 331 0 
    2341 Start residue of secondary structure not found: SHEET 258 25825 VAL h 335 PHE
    2342 h 340 0 
    2343 Start residue of secondary structure not found: SHEET 259 25925 LEU h 347 THR
    2344 h 352 0 
    2345 Start residue of secondary structure not found: SHEET 260 26026 ILE h 357 ASP
    2346 h 361 0 
    2347 Start residue of secondary structure not found: SHEET 261 26126 VAL h 387 GLY
    2348 h 391 0 
    2349 Start residue of secondary structure not found: SHEET 262 26226 HIS h 396 ILE
    2350 h 401 0 
    2351 14 messages similar to the above omitted 
    2352 End residue of secondary structure not found: SHEET 277 27727 GLU h 584 ASP h
    2353 589 0 
    2354 Start residue of secondary structure not found: SHEET 278 27827 ILE h 594 VAL
    2355 h 599 0 
    2356 Start residue of secondary structure not found: SHEET 489 48948 LEU p 265 PHE
    2357 p 271 0 
    2358 Start residue of secondary structure not found: SHEET 490 49049 LEU p 285 TRP
    2359 p 287 0 
    2360 Start residue of secondary structure not found: SHEET 491 49149 LEU p 294 TYR
    2361 p 299 0 
    2362 Start residue of secondary structure not found: SHEET 492 49249 GLY p 311 ASN
    2363 p 317 0 
    2364 End residue of secondary structure not found: SHEET 493 49349 TYR p 327 CYS p
    2365 331 0 
    2366 Start residue of secondary structure not found: SHEET 494 49449 VAL p 335 PHE
    2367 p 340 0 
    2368 Start residue of secondary structure not found: SHEET 495 49549 LEU p 347 THR
    2369 p 352 0 
    2370 Start residue of secondary structure not found: SHEET 496 49649 ILE p 357 ASP
    2371 p 361 0 
    2372 Start residue of secondary structure not found: SHEET 497 49749 VAL p 384 GLY
    2373 p 391 0 
    2374 Start residue of secondary structure not found: SHEET 498 49849 HIS p 396 SER
    2375 p 402 0 
    2376 14 messages similar to the above omitted 
    2377 End residue of secondary structure not found: SHEET 513 51351 GLU p 584 ASP p
    2378 589 0 
    2379 Start residue of secondary structure not found: SHEET 514 51451 ILE p 594 VAL
    2380 p 599 0 
    2381 Start residue of secondary structure not found: SHEET 530 53053 LEU g 265 PHE
    2382 g 271 0 
    2383 Start residue of secondary structure not found: SHEET 531 53153 LEU g 285 TRP
    2384 g 287 0 
    2385 Start residue of secondary structure not found: SHEET 532 53253 LEU g 294 TYR
    2386 g 299 0 
    2387 Start residue of secondary structure not found: SHEET 533 53353 GLY g 311 ASN
    2388 g 317 0 
    2389 End residue of secondary structure not found: SHEET 534 53453 TYR g 327 CYS g
    2390 331 0 
    2391 Start residue of secondary structure not found: SHEET 535 53553 VAL g 335 PHE
    2392 g 340 0 
    2393 Start residue of secondary structure not found: SHEET 536 53653 LEU g 347 THR
    2394 g 352 0 
    2395 Start residue of secondary structure not found: SHEET 537 53753 ILE g 357 ASP
    2396 g 361 0 
    2397 Start residue of secondary structure not found: SHEET 538 53853 VAL g 384 GLY
    2398 g 391 0 
    2399 Start residue of secondary structure not found: SHEET 539 53953 HIS g 396 SER
    2400 g 402 0 
    2401 14 messages similar to the above omitted 
    2402 End residue of secondary structure not found: SHEET 554 55455 GLU g 584 ASP g
    2403 589 0 
    2404 Start residue of secondary structure not found: SHEET 555 55555 ILE g 594 VAL
    2405 g 599 0 
    2406  
    2407 Chain information for DDJL.pdb #3 
    2408 --- 
    2409 Chain | Description 
    2410 1 2 | No description available 
    2411 3 4 | No description available 
    2412 A B D E F G I | No description available 
    2413 C | No description available 
    2414 H | No description available 
    2415 J | No description available 
    2416 K | No description available 
    2417 L | No description available 
    2418 M | No description available 
    2419 N | No description available 
    2420 O | No description available 
    2421 P | No description available 
    2422 Q | No description available 
    2423 R | No description available 
    2424 S | No description available 
    2425 T | No description available 
    2426 U | No description available 
    2427 W | No description available 
    2428 X | No description available 
    2429 Y | No description available 
    2430 a b d i | No description available 
    2431 e | No description available 
    2432 f | No description available 
    2433 g | No description available 
    2434 h | No description available 
    2435 j | No description available 
    2436 k l v y | No description available 
    2437 m | No description available 
    2438 n | No description available 
    2439 o | No description available 
    2440 p | No description available 
    2441 q | No description available 
    2442 r | No description available 
    2443 s t w z | No description available 
    2444 u | No description available 
    2445 x | No description available 
    2446  
    2447 
    2448 > hide #!2 models
    2449 
    2450 > hide #!1 models
    2451 
    2452 > hide #2.1 models
    2453 
    2454 Drag select of 313 atoms 
    2455 
    2456 > cofr sel
    2457 
    2458 > select clear
    2459 
    2460 > hide #!3 atoms
    2461 
    2462 > show #!3 cartoons
    2463 
    2464 > preset custom pretty-chain
    2465 
    2466 Using preset: Custom / Pretty-chain 
    2467 Preset expands to these ChimeraX commands:
    2468 
    2469    
    2470    
    2471     lighting soft
    2472     set bgColor white
    2473     cartoon style coil width 1.5 thickness 0.8
    2474     cartoon style helix xsection round width 3 thickness 0.8
    2475     cartoon style strand xsection round width 3 thickness 0.8
    2476     cartoon style strand arrowscale 1
    2477     cartoon style helix xsection oval sides 10
    2478     graphics silhouettes true
    2479     graphics silhouettes width 1.5
    2480     graphics silhouettes depthJump 0.003
    2481     lighting msDepthBias 0.004
    2482     lighting shadows true intensity 0.06
    2483     lighting depthCueColor #000000
    2484     color bychain
    2485 
    2486  
    2487 
    2488 > show #!3 atoms
    2489 
    2490 > style #!3 stick
    2491 
    2492 Changed 161768 atom styles 
    2493 
    2494 > color #!3 byhetero
    2495 
    2496 > open /Users/chaaban/Downloads/D_1292131736_model-annotate_P1.pdb
    2497 
    2498 D_1292131736_model-annotate_P1.pdb title: 
    2499 Cytoplasmic dynein-1 heavy chain bound to JIP3-lzi [more info...] 
    2500  
    2501 Chain information for D_1292131736_model-annotate_P1.pdb #4 
    2502 --- 
    2503 Chain | Description | UniProt 
    2504 B C | C-jun-amino-terminal kinase-interacting protein 3 | JIP3_HUMAN 1-1336 
    2505 f m | cytoplasmic dynein 1 heavy chain 1 | DYHC1_HUMAN 1-4646 
    2506 h | cytoplasmic dynein 1 intermediate chain 2 | DC1I2_HUMAN 1-612 
    2507 j | cytoplasmic dynein 1 light intermediate chain 2 | DC1L2_HUMAN 1-492 
    2508  
    2509 
    2510 > hide #!3 models
    2511 
    2512 > select add #4
    2513 
    2514 14906 atoms, 15177 bonds, 5 pseudobonds, 1816 residues, 2 models selected 
    2515 
    2516 > view sel
    2517 
    2518 > show sel atoms
    2519 
    2520 > style sel stick
    2521 
    2522 Changed 14906 atom styles 
    2523 
    2524 > show sel cartoons
    2525 
    2526 > color sel byhetero
    2527 
    2528 > select clear
    2529 
    2530 > preset custom pretty-chain
    2531 
    2532 Using preset: Custom / Pretty-chain 
    2533 Preset expands to these ChimeraX commands:
    2534 
    2535    
    2536    
    2537     lighting soft
    2538     set bgColor white
    2539     cartoon style coil width 1.5 thickness 0.8
    2540     cartoon style helix xsection round width 3 thickness 0.8
    2541     cartoon style strand xsection round width 3 thickness 0.8
    2542     cartoon style strand arrowscale 1
    2543     cartoon style helix xsection oval sides 10
    2544     graphics silhouettes true
    2545     graphics silhouettes width 1.5
    2546     graphics silhouettes depthJump 0.003
    2547     lighting msDepthBias 0.004
    2548     lighting shadows true intensity 0.06
    2549     lighting depthCueColor #000000
    2550     color bychain
    2551 
    2552  
    2553 
    2554 > color #!4 byhetero
    2555 
    2556 > select add #4/C:86@OD2
    2557 
    2558 1 atom, 1 residue, 1 model selected 
    2559 
    2560 > select add #4/f:827@OH
    2561 
    2562 2 atoms, 2 residues, 1 model selected 
    2563 
    2564 > distance #4/C:86@OD2 #4/f:827@OH
    2565 
    2566 Distance between D_1292131736_model-annotate_P1.pdb #4/C ASP 86 OD2 and /f TYR
    2567 827 OH: 2.708Å 
    2568 
    2569 > select clear
    2570 
    2571 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2572 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Chimera
    2573 > Sessions/CC2folds/CC2/Spindly/spindlycc2-withWD/spindlycc2withWD_5d354_unrelaxed_rank_1_model_3.pdb"
    2574 
    2575 Chain information for spindlycc2withWD_5d354_unrelaxed_rank_1_model_3.pdb #5 
    2576 --- 
    2577 Chain | Description 
    2578 B | No description available 
    2579 C | No description available 
    2580 D E | No description available 
    2581  
    2582 
    2583 > hide #!4 models
    2584 
    2585 > select add #5
    2586 
    2587 7033 atoms, 7162 bonds, 871 residues, 1 model selected 
    2588 
    2589 > view sel
    2590 
    2591 > show sel atoms
    2592 
    2593 > color sel byhetero
    2594 
    2595 > select clear
    2596 
    2597 > select #5/E:77@NZ
    2598 
    2599 1 atom, 1 residue, 1 model selected 
    2600 
    2601 > select add #5/B:184@NH2
    2602 
    2603 2 atoms, 2 residues, 1 model selected 
    2604 
    2605 > distance #5/E:77@NZ #5/B:184@NH2
    2606 
    2607 Distance between spindlycc2withWD_5d354_unrelaxed_rank_1_model_3.pdb #5/E LYS
    2608 77 NZ and /B ARG 184 NH2: 1.126Å 
    2609 
    2610 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2611 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Chimera
    2612 > Sessions/CC2folds/CC2/Hook3/hook3cc2moreClessN-
    2613 > withWD/hook3cc2moreClessNwithWD_63115_unrelaxed_rank_1_model_3.pdb"
    2614 
    2615 Chain information for
    2616 hook3cc2moreClessNwithWD_63115_unrelaxed_rank_1_model_3.pdb #6 
    2617 --- 
    2618 Chain | Description 
    2619 B | No description available 
    2620 C | No description available 
    2621 D E | No description available 
    2622  
    2623 
    2624 > hide #5 models
    2625 
    2626 > show #6 atoms
    2627 
    2628 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2629 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Chimera
    2630 > Sessions/CC2folds/CC2/Hook3/hook3cc2shorter/hook3cc2shorter_7fa91_unrelaxed_rank_1_model_5.pdb"
    2631 
    2632 Chain information for hook3cc2shorter_7fa91_unrelaxed_rank_1_model_5.pdb #7 
    2633 --- 
    2634 Chain | Description 
    2635 B | No description available 
    2636 C D | No description available 
    2637  
    2638 
    2639 > hide #6 models
    2640 
    2641 > close session
    2642 
    2643 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2644 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Chimera
    2645 > Sessions/CC2folds/CC2/Hook3/hook3cc2moreClessN-
    2646 > withWD/hook3cc2moreClessNwithWD_63115_unrelaxed_rank_1_model_3.pdb"
    2647 
    2648 Chain information for
    2649 hook3cc2moreClessNwithWD_63115_unrelaxed_rank_1_model_3.pdb #1 
    2650 --- 
    2651 Chain | Description 
    2652 B | No description available 
    2653 C | No description available 
    2654 D E | No description available 
    2655  
    2656 
    2657 > show atoms
    2658 
    2659 > color byhetero
    2660 
    2661 > lighting soft
    2662 
    2663 > preset custom pretty-chain
    2664 
    2665 Using preset: Custom / Pretty-chain 
    2666 Preset expands to these ChimeraX commands:
    2667 
    2668    
    2669    
    2670     lighting soft
    2671     set bgColor white
    2672     cartoon style coil width 1.5 thickness 0.8
    2673     cartoon style helix xsection round width 3 thickness 0.8
    2674     cartoon style strand xsection round width 3 thickness 0.8
    2675     cartoon style strand arrowscale 1
    2676     cartoon style helix xsection oval sides 10
    2677     graphics silhouettes true
    2678     graphics silhouettes width 1.5
    2679     graphics silhouettes depthJump 0.003
    2680     lighting msDepthBias 0.004
    2681     lighting shadows true intensity 0.06
    2682     lighting depthCueColor #000000
    2683     color bychain
    2684 
    2685  
    2686 
    2687 > color byhetero
    2688 
    2689 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2690 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Chimera
    2691 > Sessions/CC2folds/CC2/Hook3/hook3cc2-withWD/hook3cc2withWD_f909d_unrelaxed_rank_1_model_1.pdb"
    2692 
    2693 Chain information for hook3cc2withWD_f909d_unrelaxed_rank_1_model_1.pdb #2 
    2694 --- 
    2695 Chain | Description 
    2696 B | No description available 
    2697 C | No description available 
    2698 D E | No description available 
    2699  
    2700 
    2701 > hide #1 models
    2702 
    2703 > show #2 atoms
    2704 
    2705 > select clear
    2706 
    2707 > select #2/D:29
    2708 
    2709 10 atoms, 10 bonds, 1 residue, 1 model selected 
    2710 
    2711 > select add #2/D:48
    2712 
    2713 19 atoms, 18 bonds, 2 residues, 1 model selected 
    2714 
    2715 > ui tool show "Show Sequence Viewer"
    2716 
    2717 > open /Users/chaaban/Desktop/post266.mrc
    2718 
    2719 Opened post266.mrc as #3, grid size 274,274,274, pixel 1.51, shown at level
    2720 0.0161, step 2, values float32 
    2721 
    2722 > close session
    2723 
    2724 > open /Users/chaaban/Desktop/post266.mrc
    2725 
    2726 Opened post266.mrc as #1, grid size 274,274,274, pixel 1.51, shown at level
    2727 0.0161, step 2, values float32 
    2728 
    2729 > preset custom pretty-chain
    2730 
    2731 Using preset: Custom / Pretty-chain 
    2732 Preset expands to these ChimeraX commands:
    2733 
    2734    
    2735    
    2736     lighting soft
    2737     set bgColor white
    2738     cartoon style coil width 1.5 thickness 0.8
    2739     cartoon style helix xsection round width 3 thickness 0.8
    2740     cartoon style strand xsection round width 3 thickness 0.8
    2741     cartoon style strand arrowscale 1
    2742     cartoon style helix xsection oval sides 10
    2743     graphics silhouettes true
    2744     graphics silhouettes width 1.5
    2745     graphics silhouettes depthJump 0.003
    2746     lighting msDepthBias 0.004
    2747     lighting shadows true intensity 0.06
    2748     lighting depthCueColor #000000
    2749     color bychain
    2750 
    2751  
    2752 
    2753 > volume #1 step 1
    2754 
    2755 > volume #1 level 0.02356
    2756 
    2757 > ui tool show "Hide Dust"
    2758 
    2759 > surface dust #1 size 9.04
    2760 
    2761 > volume #1 level 0.02177
    2762 
    2763 > volume #1 level 0.01946
    2764 
    2765 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    2766 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/pointy.pdb"
    2767 
    2768 Chain information for pointy.pdb #2 
    2769 --- 
    2770 Chain | Description 
    2771 0 1 2 3 4 5 6 7 E F G I J K L M N O Y Z a b c d e f g h i j n o p q r s t u v
    2772 w x y z | No description available 
    2773 A | No description available 
    2774 B | No description available 
    2775 C S T U | No description available 
    2776 D V W | No description available 
    2777 P | No description available 
    2778 Q | No description available 
    2779 R | No description available 
    2780 X | No description available 
    2781 k | No description available 
    2782 l | No description available 
    2783 m | No description available 
    2784  
    2785 
    2786 > hide #!1 models
    2787 
    2788 > style stick
    2789 
    2790 Changed 70704 atom styles 
    2791 
    2792 > hide atoms
    2793 
    2794 > show cartoons
    2795 
    2796 > select clear
    2797 
    2798 Drag select of 26 residues, 1 pseudobonds 
    2799 Drag select of 404 residues, 6 pseudobonds 
    2800 
    2801 > delete atoms (#!2 & sel)
    2802 
    2803 > delete bonds (#!2 & sel)
    2804 
    2805 Drag select of 700 residues, 9 pseudobonds 
    2806 
    2807 > delete atoms (#!2 & sel)
    2808 
    2809 > delete bonds (#!2 & sel)
    2810 
    2811 Drag select of 664 residues, 9 pseudobonds 
    2812 
    2813 > select clear
    2814 
    2815 Drag select of 388 residues, 5 pseudobonds 
    2816 
    2817 > delete atoms (#!2 & sel)
    2818 
    2819 > delete bonds (#!2 & sel)
    2820 
    2821 Drag select of 390 residues, 8 pseudobonds 
    2822 Drag select of 448 residues, 8 pseudobonds 
    2823 
    2824 > delete atoms (#!2 & sel)
    2825 
    2826 > delete bonds (#!2 & sel)
    2827 
    2828 Drag select of 495 residues, 11 pseudobonds 
    2829 Drag select of 561 residues, 10 pseudobonds 
    2830 
    2831 > delete atoms (#!2 & sel)
    2832 
    2833 > delete bonds (#!2 & sel)
    2834 
    2835 Drag select of 455 residues, 6 pseudobonds 
    2836 
    2837 > delete atoms (#!2 & sel)
    2838 
    2839 > delete bonds (#!2 & sel)
    2840 
    2841 Drag select of 278 residues, 10 pseudobonds 
    2842 
    2843 > delete atoms (#!2 & sel)
    2844 
    2845 > delete bonds (#!2 & sel)
    2846 
    2847 > select clear
    2848 
    2849 Drag select of 2 pseudobonds 
    2850 No visible atoms or bonds selected 
    2851 Drag select of 306 residues, 8 pseudobonds 
    2852 
    2853 > delete atoms (#!2 & sel)
    2854 
    2855 > delete bonds (#!2 & sel)
    2856 
    2857 Drag select of 223 residues, 5 pseudobonds 
    2858 
    2859 > delete atoms (#!2 & sel)
    2860 
    2861 > delete bonds (#!2 & sel)
    2862 
    2863 Drag select of 35 residues, 1 pseudobonds 
    2864 Drag select of 679 residues, 5 pseudobonds 
    2865 
    2866 > delete atoms (#!2 & sel)
    2867 
    2868 > delete bonds (#!2 & sel)
    2869 
    2870 Drag select of 3 residues 
    2871 
    2872 > delete atoms sel
    2873 
    2874 > delete bonds sel
    2875 
    2876 > select #2/h/z/w/t/q/n/e/b
    2877 
    2878 10144 atoms, 10184 bonds, 8 pseudobonds, 1304 residues, 2 models selected 
    2879 
    2880 > select #2/h/z/w/t/q/n/e/b/Y/V/S
    2881 
    2882 13624 atoms, 13678 bonds, 11 pseudobonds, 1750 residues, 2 models selected 
    2883 
    2884 > select #2/h/z/w/t/q/n/e/b/Y/V/S/P/k
    2885 
    2886 15408 atoms, 15469 bonds, 13 pseudobonds, 1979 residues, 2 models selected 
    2887 
    2888 > delete atoms (#!2 & sel)
    2889 
    2890 > delete bonds (#!2 & sel)
    2891 
    2892 > select #2/2
    2893 
    2894 1268 atoms, 1273 bonds, 1 pseudobond, 163 residues, 2 models selected 
    2895 
    2896 > select #2/2/5
    2897 
    2898 2536 atoms, 2546 bonds, 2 pseudobonds, 326 residues, 2 models selected 
    2899 
    2900 > delete atoms (#!2 & sel)
    2901 
    2902 > delete bonds (#!2 & sel)
    2903 
    2904 > show atoms
    2905 
    2906 Drag select of 24 atoms, 1 pseudobonds, 19 bonds 
    2907 
    2908 > delete atoms (#!2 & sel)
    2909 
    2910 > delete bonds (#!2 & sel)
    2911 
    2912 Drag select of 12 atoms, 9 bonds 
    2913 Drag select of 8 atoms, 7 bonds 
    2914 
    2915 > delete atoms sel
    2916 
    2917 > delete bonds sel
    2918 
    2919 > select clear
    2920 
    2921 Drag select of 1 pseudobonds 
    2922 No visible atoms or bonds selected 
    2923 Drag select of 2 pseudobonds 
    2924 Drag select of 3 pseudobonds 
    2925 No visible atoms or bonds selected 
    2926 Drag select of 23 atoms, 19 bonds 
    2927 
    2928 > delete atoms sel
    2929 
    2930 > delete bonds sel
    2931 
    2932 > style sphere
    2933 
    2934 Changed 18079 atom styles 
    2935 
    2936 > style sphere
    2937 
    2938 Changed 18079 atom styles 
    2939 
    2940 > nucleotides atoms
    2941 
    2942 > style nucleic stick
    2943 
    2944 Changed 0 atom styles 
    2945 
    2946 > style ball
    2947 
    2948 Changed 18079 atom styles 
    2949 
    2950 > nucleotides atoms
    2951 
    2952 > style nucleic stick
    2953 
    2954 Changed 0 atom styles 
    2955 
    2956 > style sphere
    2957 
    2958 Changed 18079 atom styles 
    2959 
    2960 > style stick
    2961 
    2962 Changed 18079 atom styles 
    2963 
    2964 > style stick
    2965 
    2966 Changed 18079 atom styles 
    2967 
    2968 > select #2/7
    2969 
    2970 7 atoms, 4 bonds, 1 pseudobond, 2 residues, 2 models selected 
    2971 
    2972 > delete atoms (#!2 & sel)
    2973 
    2974 > delete bonds (#!2 & sel)
    2975 
    2976 > select #2/l
    2977 
    2978 857 atoms, 860 bonds, 1 pseudobond, 110 residues, 2 models selected 
    2979 
    2980 > select #2/I
    2981 
    2982 6 atoms, 2 bonds, 1 pseudobond, 2 residues, 2 models selected 
    2983 
    2984 > delete atoms (#!2 & sel)
    2985 
    2986 > delete bonds (#!2 & sel)
    2987 
    2988 > select #2/M
    2989 
    2990 6 atoms, 2 bonds, 1 pseudobond, 2 residues, 2 models selected 
    2991 
    2992 > delete atoms (#!2 & sel)
    2993 
    2994 > delete bonds (#!2 & sel)
    2995 
    2996 > save "/Users/chaaban/Documents/Carter Lab/Diorge/bigpf.pdb" format pdb
    2997 > models #2
    2998 
    2999 > show #!1 models
    3000 
    3001 > select add #2
    3002 
    3003 18060 atoms, 18116 bonds, 15 pseudobonds, 2323 residues, 2 models selected 
    3004 
    3005 > ui mousemode right "rotate selected models"
    3006 
    3007 > view matrix models
    3008 > #2,0.79646,-0.27202,-0.54006,89.974,0.23831,0.96202,-0.13311,-48.806,0.55576,-0.022687,0.83104,-124.26
    3009 
    3010 > view matrix models
    3011 > #2,0.82732,-0.43683,-0.35315,117.41,-0.36972,0.049847,-0.9278,251.58,0.4229,0.89816,-0.12027,-285.09
    3012 
    3013 > view matrix models
    3014 > #2,0.96831,-0.12444,-0.21652,27.702,-0.23053,-0.11197,-0.9666,250.42,0.096045,0.98589,-0.13711,-228.04
    3015 
    3016 > flip #1 y
    3017 
    3018 Unknown command: flip #1 y 
    3019 
    3020 > flip #1 axis y
    3021 
    3022 Unknown command: flip #1 axis y 
    3023 
    3024 > volume flip #1 axis y
    3025 
    3026 Opened post266.mrc y flip as #3, grid size 274,274,274, pixel 1.51, shown at
    3027 step 1, values float32 
    3028 
    3029 > view matrix models
    3030 > #2,0.96307,0.01645,0.26874,9.3488,0.26921,-0.044524,-0.96205,124.25,-0.0038602,0.99887,-0.047308,-206.5
    3031 
    3032 > ui mousemode right "translate selected models"
    3033 
    3034 > view matrix models
    3035 > #2,0.96307,0.01645,0.26874,-0.54111,0.26921,-0.044524,-0.96205,145.91,-0.0038602,0.99887,-0.047308,-1.3606
    3036 
    3037 > hide sel atoms
    3038 
    3039 > view matrix models
    3040 > #2,0.96307,0.01645,0.26874,-0.31703,0.26921,-0.044524,-0.96205,145.26,-0.0038602,0.99887,-0.047308,-6.5909
    3041 
    3042 > ui mousemode right "rotate selected models"
    3043 
    3044 > view matrix models
    3045 > #2,0.99688,-0.015645,0.077366,-4.6229,0.076181,-0.0658,-0.99492,192.71,0.020656,0.99771,-0.064403,-12.185
    3046 
    3047 > view matrix models
    3048 > #2,0.9955,-0.012753,0.093878,-4.6244,0.092876,-0.064237,-0.9936,188.64,0.018702,0.99785,-0.062764,-11.745
    3049 
    3050 > ui mousemode right zoom
    3051 
    3052 > ui mousemode right "rotate selected models"
    3053 
    3054 > view matrix models
    3055 > #2,0.89925,-0.21692,-0.37987,49.328,0.38697,-0.010474,0.92203,138.85,-0.20399,-0.97613,0.074524,416.15
    3056 
    3057 > view matrix models
    3058 > #2,0.93672,-0.23635,-0.25826,46.238,0.278,0.053806,0.95907,151.92,-0.21278,-0.97018,0.11611,417.61
    3059 
    3060 > view matrix models
    3061 > #2,0.94081,-0.22647,-0.25216,43.514,0.25311,-0.025333,0.96711,172.74,-0.22541,-0.97369,0.033487,419.97
    3062 
    3063 > surface dust #3 size 9.04
    3064 
    3065 > select clear
    3066 
    3067 > volume #3 level 0.01741
    3068 
    3069 > select #3
    3070 
    3071 2 models selected 
    3072 
    3073 > select clear
    3074 
    3075 > save /Users/chaaban/Desktop/post266flipy.mrc models #3 format mrc
    3076 
    3077 > open /Users/chaaban/Desktop/post266flipy.mrc
    3078 
    3079 Opened post266flipy.mrc as #4, grid size 274,274,274, pixel 1.51, shown at
    3080 level 0.0161, step 2, values float32 
    3081 
    3082 > hide #!2 models
    3083 
    3084 > ui mousemode right zoom
    3085 
    3086 > volume #4 step 1
    3087 
    3088 > volume #4 level 0.02484
    3089 
    3090 > ui tool show "Map Eraser"
    3091 
    3092 > volume #4 level 0.02088
    3093 
    3094 > volume erase #4 center 185.99,276.92,19.931 radius 111.11
    3095 
    3096 Opened post266flipy.mrc copy as #6, grid size 274,274,274, pixel 1.51, shown
    3097 at step 1, values float32 
    3098 
    3099 > volume erase #6 center 202.3,235.06,18.872 radius 111.1
    3100 
    3101 > volume erase #6 center 229.61,166.17,24.906 radius 111.1
    3102 
    3103 > volume erase #6 center 239.21,170.97,336.56 radius 111.1
    3104 
    3105 > volume erase #6 center 210.49,186.25,341.7 radius 111.1
    3106 
    3107 > volume erase #6 center 203.58,246.55,348.96 radius 111.1
    3108 
    3109 > volume erase #6 center 182.7,291.55,344.18 radius 111.1
    3110 
    3111 [Repeated 1 time(s)]
    3112 
    3113 > surface dust #4 size 9.04
    3114 
    3115 > surface dust #6 size 9.04
    3116 
    3117 > ui mousemode right zoom
    3118 
    3119 > show #!2 models
    3120 
    3121 Drag select of 601 residues, 6 pseudobonds 
    3122 
    3123 > delete atoms (#!2 & sel)
    3124 
    3125 > delete bonds (#!2 & sel)
    3126 
    3127 Drag select of 584 residues, 2 pseudobonds 
    3128 Drag select of 541 residues, 3 pseudobonds 
    3129 
    3130 > delete atoms (#!2 & sel)
    3131 
    3132 > delete bonds (#!2 & sel)
    3133 
    3134 Drag select of 203 residues, 3 pseudobonds 
    3135 
    3136 > delete atoms (#!2 & sel)
    3137 
    3138 > delete bonds (#!2 & sel)
    3139 
    3140 > select add #2
    3141 
    3142 7579 atoms, 7588 bonds, 7 pseudobonds, 978 residues, 2 models selected 
    3143 
    3144 > ui mousemode right "rotate selected models"
    3145 
    3146 > view matrix models
    3147 > #2,0.96631,-0.22368,-0.12729,34.707,0.1298,-0.0035502,0.99153,196.69,-0.22224,-0.97466,0.025602,419.57
    3148 
    3149 > ui mousemode right "translate selected models"
    3150 
    3151 > view matrix models
    3152 > #2,0.96631,-0.22368,-0.12729,27.109,0.1298,-0.0035502,0.99153,171.75,-0.22224,-0.97466,0.025602,420.93
    3153 
    3154 > view matrix models
    3155 > #2,0.96631,-0.22368,-0.12729,26.314,0.1298,-0.0035502,0.99153,167.05,-0.22224,-0.97466,0.025602,416.05
    3156 
    3157 > ui mousemode right "rotate selected models"
    3158 
    3159 > view matrix models
    3160 > #2,0.98916,-0.10142,-0.10617,-2.9946,0.1083,0.015712,0.99399,168.28,-0.099142,-0.99472,0.026525,391.34
    3161 
    3162 > ui mousemode right "translate selected models"
    3163 
    3164 > ui mousemode right zoom
    3165 
    3166 > select clear
    3167 
    3168 [Repeated 1 time(s)]
    3169 
    3170 > select #6
    3171 
    3172 2 models selected 
    3173 
    3174 > transparency #6.1 50
    3175 
    3176 > select clear
    3177 
    3178 > lighting simple
    3179 
    3180 > set bgColor black
    3181 
    3182 > set bgColor transparent
    3183 
    3184 > lighting full
    3185 
    3186 > ui windowfill toggle
    3187 
    3188 > select /r:155
    3189 
    3190 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3191 
    3192 > cofr sel
    3193 
    3194 > select clear
    3195 
    3196 > ui windowfill toggle
    3197 
    3198 > select add #2
    3199 
    3200 7579 atoms, 7588 bonds, 7 pseudobonds, 978 residues, 2 models selected 
    3201 
    3202 > ui mousemode right "rotate selected models"
    3203 
    3204 > view matrix models
    3205 > #2,0.96018,0.24405,-0.13597,-62.42,0.11752,0.088692,0.9891,152.14,0.25345,-0.9657,0.056481,303.34
    3206 
    3207 > ui mousemode right "translate selected models"
    3208 
    3209 > view matrix models
    3210 > #2,0.96018,0.24405,-0.13597,-60.236,0.11752,0.088692,0.9891,152.79,0.25345,-0.9657,0.056481,293.64
    3211 
    3212 > view matrix models
    3213 > #2,0.96018,0.24405,-0.13597,-57.62,0.11752,0.088692,0.9891,158.05,0.25345,-0.9657,0.056481,302.03
    3214 
    3215 > view matrix models
    3216 > #2,0.96018,0.24405,-0.13597,-57.611,0.11752,0.088692,0.9891,158.34,0.25345,-0.9657,0.056481,301.92
    3217 
    3218 > view matrix models
    3219 > #2,0.96018,0.24405,-0.13597,-58.067,0.11752,0.088692,0.9891,155.98,0.25345,-0.9657,0.056481,301.41
    3220 
    3221 > view matrix models
    3222 > #2,0.96018,0.24405,-0.13597,-56.66,0.11752,0.088692,0.9891,157.2,0.25345,-0.9657,0.056481,302.97
    3223 
    3224 > view matrix models
    3225 > #2,0.96018,0.24405,-0.13597,-56.607,0.11752,0.088692,0.9891,155.22,0.25345,-0.9657,0.056481,302.94
    3226 
    3227 > view matrix models
    3228 > #2,0.96018,0.24405,-0.13597,-56.656,0.11752,0.088692,0.9891,155.78,0.25345,-0.9657,0.056481,302.98
    3229 
    3230 > ui tool show "Fit in Map"
    3231 
    3232 > fitmap #2 inMap #6
    3233 
    3234 Fit molecule pointy.pdb (#2) to map post266flipy.mrc copy (#6) using 7579
    3235 atoms 
    3236 average map value = 0.01089, steps = 288 
    3237 shifted from previous position = 7.45 
    3238 rotated from previous position = 10.9 degrees 
    3239 atoms outside contour = 6155, contour level = 0.020879 
    3240  
    3241 Position of pointy.pdb (#2) relative to post266flipy.mrc copy (#6)
    3242 coordinates: 
    3243 Matrix rotation and translation 
    3244 0.91204510 0.28144888 -0.29826207 -55.85294011 
    3245 0.29367037 0.05940351 0.95405919 118.23622327 
    3246 0.28623671 -0.95773574 -0.02847452 292.79266571 
    3247 Axis -0.95628627 -0.29236826 0.00611323 
    3248 Axis point 0.00000000 216.37594714 83.07017167 
    3249 Rotation angle (degrees) 91.63389342 
    3250 Shift along axis 20.63278912 
    3251  
    3252 
    3253 > select clear
    3254 
    3255 > ui mousemode right "map eraser"
    3256 
    3257 > volume erase #6 center 180.5,272.44,302.16 radius 111.1
    3258 
    3259 > volume erase #6 center 191.25,216.43,304.49 radius 111.1
    3260 
    3261 > volume erase #6 center 187.66,174.96,305.32 radius 111.1
    3262 
    3263 > lighting simple
    3264 
    3265 > volume erase #6 center 210.34,287.31,41.367 radius 111.1
    3266 
    3267 > volume erase #6 center 227.24,244.64,47.986 radius 111.1
    3268 
    3269 > volume erase #6 center 245.53,224.54,53.284 radius 111.1
    3270 
    3271 > volume erase #6 center 259.09,197.53,58.677 radius 111.1
    3272 
    3273 > volume erase #6 center 251.16,166.75,55.722 radius 111.1
    3274 
    3275 > volume erase #6 center 198.08,155.79,43.177 radius 111.1
    3276 
    3277 > volume erase #6 center 180.26,179,45.621 radius 111.1
    3278 
    3279 > volume erase #6 center 158.13,198.56,228.18 radius 48.734
    3280 
    3281 > volume erase #6 center 158.64,174.47,220.21 radius 48.734
    3282 
    3283 > volume erase #6 center 171.67,148.07,226.87 radius 48.734
    3284 
    3285 > volume erase #6 center 165.72,245.88,231.6 radius 48.734
    3286 
    3287 > ui mousemode right zoom
    3288 
    3289 > ui mousemode right "map eraser"
    3290 
    3291 > surface dust #6 size 9.04
    3292 
    3293 > volume erase #6 center 191.55,250.57,216.26 radius 29.736
    3294 
    3295 > volume erase #6 center 194.91,230.64,217.88 radius 29.736
    3296 
    3297 > volume erase #6 center 201.97,210.07,219.8 radius 29.736
    3298 
    3299 > volume erase #6 center 196.06,188.67,219.47 radius 29.736
    3300 
    3301 > volume erase #6 center 198.25,167.19,219.73 radius 29.736
    3302 
    3303 > volume erase #6 center 185.77,208.49,217.12 radius 29.736
    3304 
    3305 > volume #6 level 0.01753
    3306 
    3307 > volume #6 level 0.01882
    3308 
    3309 > volume #6 level 0.02036
    3310 
    3311 > volume #6 level 0.02268
    3312 
    3313 > select #2/f
    3314 
    3315 1130 atoms, 1135 bonds, 1 pseudobond, 145 residues, 2 models selected 
    3316 
    3317 > fitmap sel inMap #6
    3318 
    3319 Fit molecule pointy.pdb (#2) to map post266flipy.mrc copy (#6) using 1130
    3320 atoms 
    3321 average map value = 0.01523, steps = 152 
    3322 shifted from previous position = 0.462 
    3323 rotated from previous position = 6.91 degrees 
    3324 atoms outside contour = 836, contour level = 0.022682 
    3325  
    3326 Position of pointy.pdb (#2) relative to post266flipy.mrc copy (#6)
    3327 coordinates: 
    3328 Matrix rotation and translation 
    3329 0.86338957 0.36172059 -0.35173381 -59.14971604 
    3330 0.32754725 0.12840370 0.93606906 98.05900442 
    3331 0.38375938 -0.92340171 -0.00761816 263.57205201 
    3332 Axis -0.92976449 -0.36775811 -0.01708721 
    3333 Axis point 0.00000000 201.48324078 77.18067106 
    3334 Rotation angle (degrees) 90.45335440 
    3335 Shift along axis 14.42960202 
    3336  
    3337 
    3338 > ui mousemode right zoom
    3339 
    3340 > ui windowfill toggle
    3341 
    3342 [Repeated 1 time(s)]
    3343 
    3344 > hide #!6 models
    3345 
    3346 Drag select of 175 residues, 1 pseudobonds 
    3347 Drag select of 233 residues, 1 pseudobonds 
    3348 
    3349 > fitmap sel inMap #6
    3350 
    3351 Fit molecule pointy.pdb (#2) to map post266flipy.mrc copy (#6) using 1825
    3352 atoms 
    3353 average map value = 0.01483, steps = 68 
    3354 shifted from previous position = 1.14 
    3355 rotated from previous position = 4.44 degrees 
    3356 atoms outside contour = 1265, contour level = 0.022682 
    3357  
    3358 Position of pointy.pdb (#2) relative to post266flipy.mrc copy (#6)
    3359 coordinates: 
    3360 Matrix rotation and translation 
    3361 0.88239972 0.32780224 -0.33751509 -56.53248731 
    3362 0.33652271 0.06162494 0.93965676 107.95732111 
    3363 0.32882094 -0.94273435 -0.05593507 280.12090619 
    3364 Axis -0.94267246 -0.33369081 0.00436708 
    3365 Axis point 0.00000000 204.42840799 82.69303315 
    3366 Rotation angle (degrees) 93.20767258 
    3367 Shift along axis 18.49056239 
    3368  
    3369 
    3370 > show #!6 models
    3371 
    3372 > ui mousemode right "rotate selected models"
    3373 
    3374 > view matrix models
    3375 > #2,0.89024,0.32189,-0.32227,-57.498,0.33424,0.019026,0.9423,116.66,0.30945,-0.94658,-0.090651,286.01
    3376 
    3377 > view matrix models
    3378 > #2,0.88388,0.34011,-0.32106,-59.562,0.33286,0.024817,0.94265,115.86,0.32857,-0.94006,-0.091275,280.33
    3379 
    3380 > view matrix models
    3381 > #2,0.88227,0.33274,-0.333,-57.541,0.33617,0.049841,0.94048,110.3,0.32954,-0.9417,-0.067886,279.98
    3382 
    3383 > ui mousemode right "translate selected models"
    3384 
    3385 > view matrix models
    3386 > #2,0.88227,0.33274,-0.333,-57.81,0.33617,0.049841,0.94048,110.15,0.32954,-0.9417,-0.067886,280.57
    3387 
    3388 > view matrix models
    3389 > #2,0.88227,0.33274,-0.333,-57.673,0.33617,0.049841,0.94048,108.16,0.32954,-0.9417,-0.067886,280.78
    3390 
    3391 > view matrix models
    3392 > #2,0.88227,0.33274,-0.333,-58.186,0.33617,0.049841,0.94048,109.57,0.32954,-0.9417,-0.067886,280.41
    3393 
    3394 > open /Users/chaaban/Desktop/run_it025_class001.mrc
    3395 
    3396 Opened run_it025_class001.mrc as #7, grid size 274,274,274, pixel 1.51, shown
    3397 at level 0.00426, step 2, values float32 
    3398 
    3399 > open /Users/chaaban/Desktop/run_it025_class002.mrc
    3400 
    3401 Opened run_it025_class002.mrc as #8, grid size 274,274,274, pixel 1.51, shown
    3402 at level 0.00273, step 2, values float32 
    3403 
    3404 > open /Users/chaaban/Desktop/run_it025_class003.mrc
    3405 
    3406 Opened run_it025_class003.mrc as #9, grid size 274,274,274, pixel 1.51, shown
    3407 at level 0.0037, step 2, values float32 
    3408 
    3409 > open /Users/chaaban/Desktop/run_it025_class004.mrc
    3410 
    3411 Opened run_it025_class004.mrc as #10, grid size 274,274,274, pixel 1.51, shown
    3412 at level 0.00439, step 2, values float32 
    3413 
    3414 > close #7-10
    3415 
    3416 > view matrix models
    3417 > #2,0.88227,0.33274,-0.333,-58.125,0.33617,0.049841,0.94048,108.72,0.32954,-0.9417,-0.067886,280.45
    3418 
    3419 > open /Users/chaaban/Desktop/post271.mrc
    3420 
    3421 Opened post271.mrc as #7, grid size 274,274,274, pixel 1.51, shown at level
    3422 0.0202, step 2, values float32 
    3423 
    3424 > open /Users/chaaban/Desktop/270.mrc
    3425 
    3426 Opened 270.mrc as #8, grid size 274,274,274, pixel 1.51, shown at level
    3427 0.0171, step 2, values float32 
    3428 
    3429 > close #7-8
    3430 
    3431 > save "/Users/chaaban/Documents/Carter Lab/Diorge/Newestfit.cxs"
    3432 
    3433 ——— End of log from Fri Dec 8 07:24:24 2023 ———
    3434 
    3435 opened ChimeraX session 
    3436 
    3437 > hide #!2 models
    3438 
    3439 > show #!2 models
    3440 
    3441 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    3442 > MRCLaboratoryofMolecularBiology/Documents/Carter
    3443 > Lab/Diorge/Membranes/postprocess330.mrc"
    3444 
    3445 MRC file is truncated. Failed reading 1 values, type int32 
    3446 
    3447 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    3448 > MRCLaboratoryofMolecularBiology/Documents/Carter
    3449 > Lab/Diorge/Membranes/postprocess_masked330.mrc"
    3450 
    3451 Opened postprocess_masked330.mrc as #5, grid size 274,274,274, pixel 1.51,
    3452 shown at level 0.0036, step 2, values float32 
    3453 
    3454 > select #5
    3455 
    3456 2 models selected 
    3457 
    3458 > ui mousemode right "translate selected models"
    3459 
    3460 > view matrix models #5,1,0,0,4.5878,0,1,0,-3.2577,0,0,1,-29.467
    3461 
    3462 > transparency #5.1 50
    3463 
    3464 > select clear
    3465 
    3466 > hide #!6 models
    3467 
    3468 > volume #5 level 0.01082
    3469 
    3470 > volume #5 flipNormals y
    3471 
    3472 Invalid "flipNormals" argument: Expected true or false (or 1 or 0) 
    3473 
    3474 > volume flip #5 y
    3475 
    3476 Expected a keyword 
    3477 
    3478 > volume #5 flipNormals y
    3479 
    3480 Invalid "flipNormals" argument: Expected true or false (or 1 or 0) 
    3481 
    3482 > volume flip #5 y
    3483 
    3484 Expected a keyword 
    3485 
    3486 > volume flip #5 axis y
    3487 
    3488 Opened postprocess_masked330.mrc y flip as #7, grid size 274,274,274, pixel
    3489 1.51, shown at step 1, values float32 
    3490 
    3491 > volume #7 level 0.01398
    3492 
    3493 > ui tool show "Fit in Map"
    3494 
    3495 > fitmap #2 inMap #5
    3496 
    3497 Fit molecule pointy.pdb (#2) to map postprocess_masked330.mrc (#5) using 7579
    3498 atoms 
    3499 average map value = 0.004806, steps = 148 
    3500 shifted from previous position = 1.79 
    3501 rotated from previous position = 5.24 degrees 
    3502 atoms outside contour = 6141, contour level = 0.01082 
    3503  
    3504 Position of pointy.pdb (#2) relative to postprocess_masked330.mrc (#5)
    3505 coordinates: 
    3506 Matrix rotation and translation 
    3507 0.89619748 0.25222062 -0.36498608 -49.11868084 
    3508 0.36883489 0.03362816 0.92888642 106.77784362 
    3509 0.24655812 -0.96708526 -0.06289030 332.46944243 
    3510 Axis -0.95009098 -0.30645111 0.05843661 
    3511 Axis point 0.00000000 224.03921459 107.11753698 
    3512 Rotation angle (degrees) 93.81483975 
    3513 Shift along axis 33.37341468 
    3514  
    3515 
    3516 > volume #5 level 0.01044
    3517 
    3518 > volume #7 level 0.007464
    3519 
    3520 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    3521 > MRCLaboratoryofMolecularBiology/Documents/Carter
    3522 > Lab/Diorge/Membranes/Fit14.cxs"
    3523 
    3524 > ui tool show "Map Eraser"
    3525 
    3526 > volume #7 level 0.01852
    3527 
    3528 > volume erase #7 center 193.08,238.55,246.16 radius 60.16
    3529 
    3530 Opened postprocess_masked330.mrc y flip copy as #9, grid size 274,274,274,
    3531 pixel 1.51, shown at step 1, values float32 
    3532 
    3533 > volume erase #9 center 202.05,212.14,250.12 radius 60.092
    3534 
    3535 > volume erase #9 center 192.25,211.19,250.37 radius 60.092
    3536 
    3537 > volume erase #9 center 213.78,213.83,255.99 radius 60.092
    3538 
    3539 [Repeated 1 time(s)]
    3540 
    3541 > volume erase #9 center 221.35,182.24,257.96 radius 60.092
    3542 
    3543 > volume erase #9 center 217.99,161.59,259.2 radius 60.092
    3544 
    3545 > volume erase #9 center 194.99,170.39,247.89 radius 60.092
    3546 
    3547 > volume erase #9 center 191.22,192.67,245.61 radius 60.092
    3548 
    3549 > volume erase #9 center 171,199.76,239.91 radius 60.092
    3550 
    3551 [Repeated 1 time(s)]
    3552 
    3553 > volume erase #9 center 176.03,144.41,240.55 radius 60.092
    3554 
    3555 > volume erase #9 center 240,145.27,95.797 radius 60.092
    3556 
    3557 > volume erase #9 center 226.29,186.57,88.389 radius 60.092
    3558 
    3559 > volume erase #9 center 207.63,234.89,85.391 radius 60.092
    3560 
    3561 > volume erase #9 center 226.9,243,94.523 radius 60.092
    3562 
    3563 [Repeated 1 time(s)]
    3564 
    3565 > volume erase #9 center 216.18,248.87,98.24 radius 60.092
    3566 
    3567 > volume erase #9 center 240.36,232.39,106.38 radius 60.092
    3568 
    3569 > volume erase #9 center 237.4,205.62,105.57 radius 60.092
    3570 
    3571 > volume erase #9 center 243.84,195.62,107.39 radius 60.092
    3572 
    3573 > volume erase #9 center 202.84,211.72,95.613 radius 60.092
    3574 
    3575 > volume erase #9 center 201.03,165.57,94.905 radius 60.092
    3576 
    3577 > volume erase #9 center 240.01,157.07,106.57 radius 60.092
    3578 
    3579 > volume erase #9 center 235.01,130.01,103.78 radius 60.092
    3580 
    3581 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    3582 > MRCLaboratoryofMolecularBiology/Documents/Carter
    3583 > Lab/Diorge/Membranes/Fit14-2.cxs"
    3584 
    3585 ——— End of log from Mon Jan 8 13:30:47 2024 ———
    3586 
    3587 opened ChimeraX session 
    3588 
    3589 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    3590 > MRCLaboratoryofMolecularBiology/Documents/Carter
    3591 > Lab/Diorge/Membranes/postprocess_masked330_onepf.mrc"
    3592 
    3593 Opened postprocess_masked330_onepf.mrc as #8, grid size 274,274,274, pixel
    3594 1.51, shown at level 9.42e-06, step 2, values float32 
    3595 
    3596 > volume #8 level 0.006547
    3597 
    3598 > volume #8 step 1
    3599 
    3600 > volume #8 level 0.0183
    3601 
    3602 > select add #9
    3603 
    3604 2 models selected 
    3605 
    3606 > ui mousemode right "translate selected models"
    3607 
    3608 > view matrix models
    3609 > #2,0.8962,0.25222,-0.36499,-52.482,0.36883,0.033628,0.92889,105.97,0.24656,-0.96709,-0.06289,331.48,#9,1,0,0,-3.3629,0,1,0,-0.80469,0,0,1,-0.99407
    3610 
    3611 > view matrix models
    3612 > #2,0.8962,0.25222,-0.36499,-49.671,0.36883,0.033628,0.92889,106.64,0.24656,-0.96709,-0.06289,333.6,#9,1,0,0,-0.5521,0,1,0,-0.1342,0,0,1,1.1318
    3613 
    3614 > view matrix models
    3615 > #2,0.8962,0.25222,-0.36499,-49.233,0.36883,0.033628,0.92889,106.76,0.24656,-0.96709,-0.06289,332.49,#9,1,0,0,-0.11413,0,1,0,-0.019629,0,0,1,0.022279
    3616 
    3617 > ui tool show "Fit in Map"
    3618 
    3619 > fitmap #8 inMap #9
    3620 
    3621 Fit map postprocess_masked330_onepf.mrc in map postprocess_masked330.mrc y
    3622 flip copy using 8870 points 
    3623 correlation = 1, correlation about mean = 0.9999, overlap = 8.477 
    3624 steps = 44, shift = 0.125, angle = 0.0484 degrees 
    3625  
    3626 Position of postprocess_masked330_onepf.mrc (#8) relative to
    3627 postprocess_masked330.mrc y flip copy (#9) coordinates: 
    3628 Matrix rotation and translation 
    3629 0.99999965 -0.00003328 0.00084123 -0.17403765 
    3630 0.00003334 1.00000000 -0.00006481 0.00820305 
    3631 -0.00084122 0.00006484 0.99999964 0.14894204 
    3632 Axis 0.07677317 0.99626790 0.03944797 
    3633 Axis point 176.93422695 0.00000000 207.02293470 
    3634 Rotation angle (degrees) 0.04837919 
    3635 Shift along axis 0.00068647 
    3636  
    3637 
    3638 > select clear
    3639 
    3640 > transparency #8.1#9.1 50
    3641 
    3642 > select clear
    3643 
    3644 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    3645 > MRCLaboratoryofMolecularBiology/Documents/Carter
    3646 > Lab/Diorge/Membranes/Fit14-3.cxs"
    3647 
    3648 ——— End of log from Mon Jan 8 14:05:26 2024 ———
    3649 
    3650 opened ChimeraX session 
    3651 
    3652 > volume #8 level 0.01009
    3653 
    3654 > select add #8
    3655 
    3656 2 models selected 
    3657 
    3658 > ui mousemode right "rotate selected models"
    3659 
    3660 > view matrix models
    3661 > #8,0.99663,0.081595,0.0088551,-17.107,-0.081375,0.99642,-0.022922,21.198,-0.010694,0.022124,0.9997,-2.1295
    3662 
    3663 > undo
    3664 
    3665 > select add #2
    3666 
    3667 7579 atoms, 7588 bonds, 7 pseudobonds, 978 residues, 4 models selected 
    3668 
    3669 > view matrix models
    3670 > #2,0.95632,0.23783,-0.17,-63.966,0.16572,0.038013,0.98544,151.06,0.24083,-0.97056,-0.0030601,333.3,#8,0.97907,0.20278,0.01729,-43.176,-0.20148,0.97777,-0.05811,56.03,-0.028689,0.05341,0.99816,-5.481
    3671 
    3672 > undo
    3673 
    3674 > select clear
    3675 
    3676 > select add #2
    3677 
    3678 7579 atoms, 7588 bonds, 7 pseudobonds, 978 residues, 2 models selected 
    3679 
    3680 > view matrix models
    3681 > #2,0.95472,0.23838,-0.17798,-63.663,0.174,0.03778,0.98402,150.13,0.2413,-0.97044,-0.0054104,333.28
    3682 
    3683 > ui mousemode right "translate selected models"
    3684 
    3685 > view matrix models
    3686 > #2,0.95472,0.23838,-0.17798,-63.774,0.174,0.03778,0.98402,150.9,0.2413,-0.97044,-0.0054104,333.33
    3687 
    3688 > cofr sel
    3689 
    3690 > ui tool show "Hide Dust"
    3691 
    3692 > surface dust #9 size 9.04
    3693 
    3694 > surface dust #8 size 20.38
    3695 
    3696 > surface dust #8 size 70.91
    3697 
    3698 [Repeated 1 time(s)]
    3699 
    3700 > surface dust #8 size 221.21
    3701 
    3702 > surface dust #8 size 230.57
    3703 
    3704 > surface dust #8 size 200.96
    3705 
    3706 > surface dust #8 size 87.12
    3707 
    3708 > view matrix models
    3709 > #2,0.95472,0.23838,-0.17798,-64.373,0.174,0.03778,0.98402,155.69,0.2413,-0.97044,-0.0054104,333.27
    3710 
    3711 > view matrix models
    3712 > #2,0.95472,0.23838,-0.17798,-63.821,0.174,0.03778,0.98402,153.51,0.2413,-0.97044,-0.0054104,333.65
    3713 
    3714 > view matrix models
    3715 > #2,0.95472,0.23838,-0.17798,-62.947,0.174,0.03778,0.98402,155.1,0.2413,-0.97044,-0.0054104,333.96
    3716 
    3717 > view matrix models
    3718 > #2,0.95472,0.23838,-0.17798,-62.915,0.174,0.03778,0.98402,155.63,0.2413,-0.97044,-0.0054104,333.75
    3719 
    3720 > view matrix models
    3721 > #2,0.95472,0.23838,-0.17798,-62.601,0.174,0.03778,0.98402,154.67,0.2413,-0.97044,-0.0054104,333.67
    3722 
    3723 > view matrix models
    3724 > #2,0.95472,0.23838,-0.17798,-62.896,0.174,0.03778,0.98402,153.54,0.2413,-0.97044,-0.0054104,333.04
    3725 
    3726 > select clear
    3727 
    3728 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    3729 > MRCLaboratoryofMolecularBiology/Documents/Carter
    3730 > Lab/Diorge/Membranes/Fit14-4.cxs"
    3731 
    3732 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3733 chains... 
    3734 ISOLDE: Corrected atom nomenclature of 66 residues in model #2 to IUPAC-IUB
    3735 standards. 
    3736 
    3737 > clipper associate #9 toModel #2
    3738 
    3739 Opened postprocess_masked330.mrc y flip copy as #2.1.1.1, grid size
    3740 274,274,274, pixel 1.51, shown at step 1, values float32 
    3741 
    3742 > isolde restrain distances "#2/0", "#2/6", "#2/B", "#2/C", "#2/D", "#2/E",
    3743 > "#2/K", "#2/O", "#2/W", "#2/Z", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r",
    3744 > "#2/u", "#2/v", "#2/x", "#2/y" templateAtoms "#2/0", "#2/6", "#2/B", "#2/C",
    3745 > "#2/D", "#2/E", "#2/K", "#2/O", "#2/W", "#2/Z", "#2/c", "#2/f", "#2/m",
    3746 > "#2/o", "#2/r", "#2/u", "#2/v", "#2/x", "#2/y" distanceCutoff 10
    3747 
    3748 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3749 chains... 
    3750 
    3751 > isolde sim start /B-E,O,K,W-f,6,o-u,x,0,m,v,y
    3752 
    3753 Sim termination reason: None 
    3754 ISOLDE: stopped sim 
    3755 
    3756 > isolde sim start /B-E,O,K,W-f,6,o-u,x,0,m,v,y
    3757 
    3758 Sim termination reason: None 
    3759 ISOLDE: stopped sim 
    3760 
    3761 > addh #2
    3762 
    3763 Summary of feedback from adding hydrogens to pointy.pdb #2.2 
    3764 --- 
    3765 warnings | Not adding hydrogens to /B GLU 119 N because it is missing heavy-
    3766 atom bond partners 
    3767 Not adding hydrogens to /B GLU 119 C because it is missing heavy-atom bond
    3768 partners 
    3769 Not adding hydrogens to /C GLU 119 N because it is missing heavy-atom bond
    3770 partners 
    3771 Not adding hydrogens to /C GLU 119 C because it is missing heavy-atom bond
    3772 partners 
    3773 Not adding hydrogens to /D GLU 119 N because it is missing heavy-atom bond
    3774 partners 
    3775 11 messages similar to the above omitted 
    3776 The following atoms were skipped as donors/acceptors due to missing heavy-atom
    3777 bond partners: /B GLU 119 N; /D GLU 119 N; /C GLU 119 N; /E ASP 153 N; /O VAL
    3778 116 N; /K LEU 18 N; /v GLU 170 N; /y ARG 59 N 
    3779 notes | No usable SEQRES records for pointy.pdb (#2.2) chain 0; guessing
    3780 termini instead 
    3781 No usable SEQRES records for pointy.pdb (#2.2) chain 6; guessing termini
    3782 instead 
    3783 No usable SEQRES records for pointy.pdb (#2.2) chain B; guessing termini
    3784 instead 
    3785 No usable SEQRES records for pointy.pdb (#2.2) chain C; guessing termini
    3786 instead 
    3787 No usable SEQRES records for pointy.pdb (#2.2) chain D; guessing termini
    3788 instead 
    3789 14 messages similar to the above omitted 
    3790 Chain-initial residues that are actual N termini: /6 LYS 3, /Z LYS 3, /c LYS
    3791 3, /f LYS 3, /m TRP 5, /o LYS 3 
    3792 Chain-initial residues that are not actual N termini: /0 GLY 150, /6 GLY 53,
    3793 /B GLU 119, /C GLU 119, /D GLU 119, /E ASP 153, /K LEU 18, /O VAL 116, /W ASN
    3794 4, /W GLY 53, /Z GLY 53, /c GLY 53, /f GLY 53, /o GLY 53, /r THR 98, /u LEU
    3795 18, /u GLU 119, /v GLU 170, /x GLU 136, /y ARG 59 
    3796 Chain-final residues that are actual C termini: /v GLU 170 
    3797 Chain-final residues that are not actual C termini: /0 GLU 170, /6 GLU 170, /6
    3798 MET 49, /B GLU 119, /C GLU 119, /D GLU 119, /E ASP 153, /K LEU 18, /O VAL 116,
    3799 /W ILE 89, /W MET 49, /Z SER 117, /Z MET 49, /c GLN 134, /c MET 49, /f GLY
    3800 150, /f MET 49, /m TRP 5, /o GLU 170, /o MET 49, /r GLU 170, /u GLU 170, /u
    3801 LEU 18, /x GLU 170, /y ARG 59 
    3802 1018 hydrogen bonds 
    3803 Adding 'H' to /0 GLY 150 
    3804 Adding 'H' to /6 GLY 53 
    3805 Adding 'H' to /W ASN 4 
    3806 Adding 'H' to /W GLY 53 
    3807 Adding 'H' to /Z GLY 53 
    3808 7 messages similar to the above omitted 
    3809 /0 GLU 170 is not terminus, removing H atom from 'C' 
    3810 /6 GLU 170 is not terminus, removing H atom from 'C' 
    3811 /W ILE 89 is not terminus, removing H atom from 'C' 
    3812 /Z SER 117 is not terminus, removing H atom from 'C' 
    3813 /c GLN 134 is not terminus, removing H atom from 'C' 
    3814 7 messages similar to the above omitted 
    3815 7659 hydrogens added 
    3816  
    3817 
    3818 > isolde sim start /B-E,O,K,W-f,6,o-u,x,0,m,v,y
    3819 
    3820 Sim termination reason: None 
    3821 ISOLDE: stopped sim 
    3822 
    3823 > select clear
    3824 
    3825 > isolde sim start /W-f,6,o-r,x,0/u:119-170
    3826 
    3827 ISOLDE: started sim 
    3828 
    3829 > hide sel atoms
    3830 
    3831 > hide sel cartoons
    3832 
    3833 > show sel cartoons
    3834 
    3835 > ui mousemode right "isolde tug selection"
    3836 
    3837 > select clear
    3838 
    3839 > isolde sim stop discardTo start
    3840 
    3841 Sim termination reason: None 
    3842 reverting to start 
    3843 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3844 chains... 
    3845 ISOLDE: stopped sim 
    3846 
    3847 > hide sel atoms
    3848 
    3849 > hide sel cartoons
    3850 
    3851 > show sel cartoons
    3852 
    3853 > isolde sim start /W-f,6,o-r,x,0/u:119-170
    3854 
    3855 ISOLDE: started sim 
    3856 
    3857 > show sel cartoons
    3858 
    3859 > select clear
    3860 
    3861 > isolde sim stop discardTo start
    3862 
    3863 Sim termination reason: None 
    3864 reverting to start 
    3865 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3866 chains... 
    3867 ISOLDE: stopped sim 
    3868 
    3869 > close #2.2.7
    3870 
    3871 > isolde sim start /W-f,6,o-r,x,0/u:119-170
    3872 
    3873 ISOLDE: started sim 
    3874 
    3875 > show sel cartoons
    3876 
    3877 > ui windowfill toggle
    3878 
    3879 > isolde sim stop discardTo start
    3880 
    3881 Sim termination reason: None 
    3882 reverting to start 
    3883 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3884 chains... 
    3885 ISOLDE: stopped sim 
    3886 
    3887 > close #2.2.4
    3888 
    3889 [Repeated 1 time(s)]
    3890 
    3891 > isolde restrain distances "#2/0", "#2/6", "#2/B", "#2/C", "#2/D", "#2/E",
    3892 > "#2/K", "#2/O", "#2/Z", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r", "#2/u",
    3893 > "#2/v", "#2/x", "#2/y" templateAtoms "#2/0", "#2/6", "#2/B", "#2/C", "#2/D",
    3894 > "#2/E", "#2/K", "#2/O", "#2/Z", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r",
    3895 > "#2/u", "#2/v", "#2/x", "#2/y" distanceCutoff 2.5
    3896 
    3897 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3898 chains... 
    3899 
    3900 > close #2.2.4
    3901 
    3902 [Repeated 1 time(s)]
    3903 
    3904 > isolde restrain distances "#2/0", "#2/6", "#2/B", "#2/C", "#2/D", "#2/E",
    3905 > "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r",
    3906 > "#2/u", "#2/v", "#2/x", "#2/y" templateAtoms "#2/0", "#2/6", "#2/B", "#2/C",
    3907 > "#2/D", "#2/E", "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m",
    3908 > "#2/o", "#2/r", "#2/u", "#2/v", "#2/x", "#2/y" distanceCutoff 2.5
    3909 
    3910 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3911 chains... 
    3912 
    3913 > show sel atoms
    3914 
    3915 > close #2.2.4
    3916 
    3917 [Repeated 8 time(s)]
    3918 
    3919 > close #2.2.7
    3920 
    3921 > close #2.2.4
    3922 
    3923 [Repeated 4 time(s)]
    3924 
    3925 > isolde restrain distances "#2/0", "#2/6", "#2/B", "#2/C", "#2/D", "#2/E",
    3926 > "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r",
    3927 > "#2/u", "#2/v", "#2/x", "#2/y" templateAtoms "#2/0", "#2/6", "#2/B", "#2/C",
    3928 > "#2/D", "#2/E", "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m",
    3929 > "#2/o", "#2/r", "#2/u", "#2/v", "#2/x", "#2/y" distanceCutoff 2.5
    3930 
    3931 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3932 chains... 
    3933 
    3934 > isolde restrain distances "#2/0", "#2/6", "#2/B", "#2/C", "#2/D", "#2/E",
    3935 > "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r",
    3936 > "#2/u", "#2/v", "#2/x", "#2/y" templateAtoms "#2/0", "#2/6", "#2/B", "#2/C",
    3937 > "#2/D", "#2/E", "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m",
    3938 > "#2/o", "#2/r", "#2/u", "#2/v", "#2/x", "#2/y" distanceCutoff 10
    3939 
    3940 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3941 chains... 
    3942 
    3943 > close #2.2.4
    3944 
    3945 > isolde restrain distances "#2/0", "#2/6", "#2/B", "#2/C", "#2/D", "#2/E",
    3946 > "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r",
    3947 > "#2/u", "#2/v", "#2/x", "#2/y" templateAtoms "#2/0", "#2/6", "#2/B", "#2/C",
    3948 > "#2/D", "#2/E", "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m",
    3949 > "#2/o", "#2/r", "#2/u", "#2/v", "#2/x", "#2/y" distanceCutoff 3
    3950 
    3951 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3952 chains... 
    3953 
    3954 > isolde restrain distances "#2/0", "#2/6", "#2/B", "#2/C", "#2/D", "#2/E",
    3955 > "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r",
    3956 > "#2/u", "#2/v", "#2/x", "#2/y" templateAtoms "#2/0", "#2/6", "#2/B", "#2/C",
    3957 > "#2/D", "#2/E", "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m",
    3958 > "#2/o", "#2/r", "#2/u", "#2/v", "#2/x", "#2/y" distanceCutoff 4
    3959 
    3960 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3961 chains... 
    3962 
    3963 > isolde restrain distances "#2/0", "#2/6", "#2/B", "#2/C", "#2/D", "#2/E",
    3964 > "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r",
    3965 > "#2/u", "#2/v", "#2/x", "#2/y" templateAtoms "#2/0", "#2/6", "#2/B", "#2/C",
    3966 > "#2/D", "#2/E", "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m",
    3967 > "#2/o", "#2/r", "#2/u", "#2/v", "#2/x", "#2/y" distanceCutoff 5
    3968 
    3969 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3970 chains... 
    3971 
    3972 > close #2.2.4
    3973 
    3974 [Repeated 8 time(s)]
    3975 
    3976 > close #2.2.7
    3977 
    3978 > isolde restrain distances "#2/0", "#2/6", "#2/B", "#2/C", "#2/D", "#2/E",
    3979 > "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r",
    3980 > "#2/u", "#2/v", "#2/x", "#2/y" templateAtoms "#2/0", "#2/6", "#2/B", "#2/C",
    3981 > "#2/D", "#2/E", "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m",
    3982 > "#2/o", "#2/r", "#2/u", "#2/v", "#2/x", "#2/y" distanceCutoff 3
    3983 
    3984 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    3985 chains... 
    3986 
    3987 > ui windowfill toggle
    3988 
    3989 > hide #!8 models
    3990 
    3991 > ui windowfill toggle
    3992 
    3993 > isolde restrain distances "#2/0", "#2/6", "#2/B", "#2/C", "#2/D", "#2/E",
    3994 > "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r",
    3995 > "#2/u", "#2/v", "#2/x", "#2/y" templateAtoms "#2/0", "#2/6", "#2/B", "#2/C",
    3996 > "#2/D", "#2/E", "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m",
    3997 > "#2/o", "#2/r", "#2/u", "#2/v", "#2/x", "#2/y" distanceCutoff 4
    3998 
    3999 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4000 chains... 
    4001 
    4002 > ui windowfill toggle
    4003 
    4004 > show #!8 models
    4005 
    4006 > hide #!8 models
    4007 
    4008 > show #!8 models
    4009 
    4010 > ui windowfill toggle
    4011 
    4012 > isolde sim start /W-f,6,o-r,x,0/u:119-170
    4013 
    4014 ISOLDE: started sim 
    4015 
    4016 > hide sel atoms
    4017 
    4018 > show sel cartoons
    4019 
    4020 > ui windowfill toggle
    4021 
    4022 > hide #!8 models
    4023 
    4024 > show #!8 models
    4025 
    4026 > show #!6 models
    4027 
    4028 > volume #6 level 0.01761
    4029 
    4030 > hide #!6 models
    4031 
    4032 > isolde sim stop discardTo start
    4033 
    4034 Sim termination reason: None 
    4035 reverting to start 
    4036 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4037 chains... 
    4038 ISOLDE: stopped sim 
    4039 
    4040 > close #2.2.7
    4041 
    4042 > isolde sim start /W-f,6,o-r,x,0/u:119-170
    4043 
    4044 ISOLDE: started sim 
    4045 
    4046 > isolde sim stop discardTo start
    4047 
    4048 Sim termination reason: None 
    4049 reverting to start 
    4050 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4051 chains... 
    4052 ISOLDE: stopped sim 
    4053 
    4054 > isolde restrain distances "#2/0", "#2/6", "#2/B", "#2/C", "#2/D", "#2/E",
    4055 > "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m", "#2/o", "#2/r",
    4056 > "#2/u", "#2/v", "#2/x", "#2/y" templateAtoms "#2/0", "#2/6", "#2/B", "#2/C",
    4057 > "#2/D", "#2/E", "#2/K", "#2/O", "#2/Z", "#2/W", "#2/c", "#2/f", "#2/m",
    4058 > "#2/o", "#2/r", "#2/u", "#2/v", "#2/x", "#2/y" distanceCutoff 5
    4059 
    4060 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4061 chains... 
    4062 
    4063 > isolde sim start /W-f,6,o-r,x,0/u:119-170
    4064 
    4065 ISOLDE: started sim 
    4066 
    4067 > hide sel atoms
    4068 
    4069 > show sel cartoons
    4070 
    4071 > ui mousemode right "isolde tug selection"
    4072 
    4073 > select clear
    4074 
    4075 [Repeated 4 time(s)]
    4076 
    4077 > transparency #8#2.1,3#2.2.1,4-10#!2#!2.2#!2.2.2-3 70
    4078 
    4079 > select clear
    4080 
    4081 > isolde sim stop discardTo start
    4082 
    4083 Sim termination reason: None 
    4084 reverting to start 
    4085 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4086 chains... 
    4087 ISOLDE: stopped sim 
    4088 
    4089 > save #2.2
    4090 
    4091 No known data format for file suffix '.2' 
    4092 
    4093 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    4094 > MRCLaboratoryofMolecularBiology/Documents/Carter
    4095 > Lab/Diorge/Membranes/pointy-1pf.pdb" format pdb #2.2
    4096 
    4097 Expected a keyword 
    4098 
    4099 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    4100 > MRCLaboratoryofMolecularBiology/Documents/Carter
    4101 > Lab/Diorge/Membranes/pointy-1pf.pdb" #2.2 format pdb
    4102 
    4103 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    4104 > MRCLaboratoryofMolecularBiology/Documents/Carter
    4105 > Lab/Diorge/Membranes/pointy-1pf.pdb"
    4106 
    4107 Chain information for pointy-1pf.pdb #9 
    4108 --- 
    4109 Chain | Description 
    4110 0 6 o r x | No description available 
    4111 W | No description available 
    4112 Z | No description available 
    4113 c | No description available 
    4114 f | No description available 
    4115 u | No description available 
    4116  
    4117 
    4118 > hide atoms
    4119 
    4120 > show cartoons
    4121 
    4122 > hide #!9 models
    4123 
    4124 > isolde sim start #2.2/W-f,6,o-r,x,0/u:119-170
    4125 
    4126 ISOLDE: started sim 
    4127 
    4128 > show sel cartoons
    4129 
    4130 > ui mousemode right "isolde tug selection"
    4131 
    4132 > isolde sim stop discardTo start
    4133 
    4134 Sim termination reason: None 
    4135 reverting to start 
    4136 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4137 chains... 
    4138 ISOLDE: stopped sim 
    4139 
    4140 > select clear
    4141 
    4142 > select up
    4143 
    4144 15188 atoms, 15212 bonds, 969 residues, 1 model selected 
    4145 
    4146 > select down
    4147 
    4148 15169 atoms, 968 residues, 1 model selected 
    4149 
    4150 > isolde sim start #2.2/W-f,6,o-r,x,0/u:119-170
    4151 
    4152 ISOLDE: started sim 
    4153 
    4154 > show sel cartoons
    4155 
    4156 > isolde sim stop discardTo start
    4157 
    4158 Sim termination reason: None 
    4159 reverting to start 
    4160 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    4161 chains... 
    4162 ISOLDE: stopped sim 
    4163 
    4164 > volume #8 level 0.01298
    4165 
    4166 > hide #!2 models
    4167 
    4168 > volume #8 level 0.007352
    4169 
    4170 > show #!7 models
    4171 
    4172 > hide #!7 models
    4173 
    4174 > show #!7 models
    4175 
    4176 > ui tool show "Fit in Map"
    4177 
    4178 > fitmap #7 inMap #8
    4179 
    4180 Fit map postprocess_masked330.mrc y flip in map
    4181 postprocess_masked330_onepf.mrc using 41934 points 
    4182 correlation = 0.4437, correlation about mean = 0.1428, overlap = 7.772 
    4183 steps = 128, shift = 5.86, angle = 0.449 degrees 
    4184  
    4185 Position of postprocess_masked330.mrc y flip (#7) relative to
    4186 postprocess_masked330_onepf.mrc (#8) coordinates: 
    4187 Matrix rotation and translation 
    4188 0.99997505 -0.00413594 0.00572689 -0.43621875 
    4189 0.00412998 0.99999092 0.00105340 -1.03785357 
    4190 -0.00573119 -0.00102972 0.99998305 -28.44182592 
    4191 Axis -0.14586425 0.80231980 0.57879751 
    4192 Axis point -3223.93334686 0.00000000 501.00132576 
    4193 Rotation angle (degrees) 0.40912956 
    4194 Shift along axis -17.23111975 
    4195  
    4196 
    4197 > hide #!8 models
    4198 
    4199 > show #!9 models
    4200 
    4201 > hide #!7 models
    4202 
    4203 > select #9/6
    4204 
    4205 2554 atoms, 2559 bonds, 1 pseudobond, 163 residues, 2 models selected 
    4206 
    4207 > combine #9/6
    4208 
    4209 > hide #!9 models
    4210 
    4211 > hide #!10 models
    4212 
    4213 > show #!10 models
    4214 
    4215 > select add #9
    4216 
    4217 15238 atoms, 15247 bonds, 7 pseudobonds, 978 residues, 2 models selected 
    4218 
    4219 > select subtract #9
    4220 
    4221 Nothing selected 
    4222 
    4223 > show #!9 models
    4224 
    4225 > hide #!10 models
    4226 
    4227 > hide #!9 models
    4228 
    4229 > show #!10 models
    4230 
    4231 > delete "#10/0", "#10/B", "#10/C", "#10/D", "#10/E", "#10/K", "#10/O",
    4232 > "#10/Z", "#10/W", "#10/c", "#10/f", "#10/m", "#10/o", "#10/r", "#10/u",
    4233 > "#10/v", "#10/x", "#10/y"
    4234 
    4235 > show #!9 models
    4236 
    4237 > hide #!10 models
    4238 
    4239 > hide #!9 models
    4240 
    4241 > show #!10 models
    4242 
    4243 > select "#10/0", "#10/B", "#10/C", "#10/D", "#10/E", "#10/K", "#10/O",
    4244 > "#10/Z", "#10/W", "#10/c", "#10/f", "#10/m", "#10/o", "#10/r", "#10/u",
    4245 > "#10/v", "#10/x", "#10/y"
    4246 
    4247 Nothing selected 
    4248 
    4249 > select #10/0, #10/6, #10/B, #10/C, #10/D, #10/E, #10/K, #10/O, #10/Z, #10/W,
    4250 > #10/c, #10/f, #10/m, #10/o, #10/r, #10/u, #10/v, #10/x, #10/y
    4251 
    4252 Expected an objects specifier or a keyword 
    4253 
    4254 > select #10/0 #10/6 #10/B #10/C #10/D #10/E #10/K #10/O #10/Z #10/W #10/c
    4255 > #10/f #10/m #10/o #10/r #10/u #10/v #10/x #10/y
    4256 
    4257 15235 atoms, 15246 bonds, 7 pseudobonds, 977 residues, 2 models selected 
    4258 
    4259 > select #10/0 #10/B #10/C #10/D #10/E #10/K #10/O #10/Z #10/W #10/c #10/f
    4260 > #10/m #10/o #10/r #10/u #10/v #10/x #10/y
    4261 
    4262 12681 atoms, 12687 bonds, 6 pseudobonds, 814 residues, 2 models selected 
    4263 
    4264 > delete #10/0 #10/B #10/C #10/D #10/E #10/K #10/O #10/Z #10/W #10/c #10/f
    4265 > #10/m #10/o #10/r #10/u #10/v #10/x #10/y
    4266 
    4267 > show #!8 models
    4268 
    4269 > show #!9 models
    4270 
    4271 > hide #!9 models
    4272 
    4273 > hide #!8 models
    4274 
    4275 > show #!7 models
    4276 
    4277 > show #!9 models
    4278 
    4279 > hide #!9 models
    4280 
    4281 > show #!8 models
    4282 
    4283 > hide #!7 models
    4284 
    4285 > volume #8 level 0.01279
    4286 
    4287 > select add #10
    4288 
    4289 2554 atoms, 2559 bonds, 1 pseudobond, 163 residues, 2 models selected 
    4290 
    4291 > ui mousemode right "translate selected models"
    4292 
    4293 > view matrix models #10,1,0,0,3.6368,0,1,0,30.496,0,0,1,1.8197
    4294 
    4295 > view matrix models #10,1,0,0,3.1251,0,1,0,30.655,0,0,1,1.7231
    4296 
    4297 > hide #!8 models
    4298 
    4299 > ui mousemode right select
    4300 
    4301 Drag select of 74 residues, 1 pseudobonds 
    4302 
    4303 > show #!8 models
    4304 
    4305 > fitmap sel inMap #8
    4306 
    4307 Fit molecule copy of pointy-1pf.pdb (#10) to map
    4308 postprocess_masked330_onepf.mrc (#8) using 1173 atoms 
    4309 average map value = 0.01589, steps = 88 
    4310 shifted from previous position = 2.16 
    4311 rotated from previous position = 17.2 degrees 
    4312 atoms outside contour = 539, contour level = 0.012786 
    4313  
    4314 Position of copy of pointy-1pf.pdb (#10) relative to
    4315 postprocess_masked330_onepf.mrc (#8) coordinates: 
    4316 Matrix rotation and translation 
    4317 0.95798862 -0.27607387 -0.07772406 73.97159160 
    4318 0.26965352 0.95930373 -0.08380535 -3.06895317 
    4319 0.09769745 0.05932600 0.99344634 -28.32096568 
    4320 Axis 0.24225556 -0.29690793 0.92366548 
    4321 Axis point 59.49163008 265.31842560 0.00000000 
    4322 Rotation angle (degrees) 17.18236274 
    4323 Shift along axis -7.32787283 
    4324  
    4325 
    4326 > show #!9 models
    4327 
    4328 > hide #!10 models
    4329 
    4330 > show #!10 models
    4331 
    4332 > hide #!8 models
    4333 
    4334 > hide #!9 models
    4335 
    4336 > hide #!10 models
    4337 
    4338 > show #!10 models
    4339 
    4340 > show #!9 models
    4341 
    4342 > show #!8 models
    4343 
    4344 > hide #!8 models
    4345 
    4346 > hide #!9 models
    4347 
    4348 > show #!9 models
    4349 
    4350 > hide #!10 models
    4351 
    4352 > select #10/0 #10/B #10/C #10/D #10/E #10/K #10/O #10/Z #10/W #10/c #10/f
    4353 > #10/m #10/o #10/r #10/u #10/v #10/x #10/y
    4354 
    4355 Nothing selected 
    4356 
    4357 > close #10
    4358 
    4359 > combine #9
    4360 
    4361 > select #10/0 #10/B #10/C #10/D #10/E #10/K #10/O #10/Z #10/W #10/c #10/f
    4362 > #10/m #10/o #10/r #10/u #10/v #10/x #10/y
    4363 
    4364 12684 atoms, 12688 bonds, 6 pseudobonds, 815 residues, 2 models selected 
    4365 
    4366 > hide #!9 models
    4367 
    4368 > select #10/x #10/B #10/C #10/D #10/E #10/K #10/O #10/Z #10/W #10/c #10/f
    4369 > #10/m #10/o #10/r #10/u #10/v #10/x #10/y
    4370 
    4371 12419 atoms, 12424 bonds, 6 pseudobonds, 796 residues, 2 models selected 
    4372 
    4373 > select #10/0 #10/B #10/C #10/D #10/E #10/K #10/O #10/Z #10/W #10/c #10/f
    4374 > #10/m #10/o #10/r #10/u #10/v #10/x #10/y
    4375 
    4376 12684 atoms, 12688 bonds, 6 pseudobonds, 815 residues, 2 models selected 
    4377 
    4378 > select #10/0 #10/B #10/C #10/D #10/E #10/K #10/O #10/Z #10/W #10/c #10/f
    4379 > #10/m #10/o #10/r #10/u #10/v #10/y
    4380 
    4381 12219 atoms, 12223 bonds, 6 pseudobonds, 782 residues, 2 models selected 
    4382 
    4383 > delete atoms (#!10 & sel)
    4384 
    4385 > delete bonds (#!10 & sel)
    4386 
    4387 Drag select of 11 residues 
    4388 Drag select of 15 residues 
    4389 Drag select of 14 residues 
    4390 Drag select of 15 residues 
    4391 
    4392 > delete atoms sel
    4393 
    4394 > delete bonds sel
    4395 
    4396 > combine #10
    4397 
    4398 > hide #!10 models
    4399 
    4400 > show #!10 models
    4401 
    4402 > hide #!11 models
    4403 
    4404 > close #11
    4405 
    4406 > show #!9 models
    4407 
    4408 > hide #!10 models
    4409 
    4410 > show #!9 atoms
    4411 
    4412 > style #!9 stick
    4413 
    4414 Changed 15238 atom styles 
    4415 
    4416 > color #!9 byhetero
    4417 
    4418 > select H
    4419 
    4420 16724 atoms, 2121 residues, 3 models selected 
    4421 
    4422 > hide (#!9 & sel) target a
    4423 
    4424 > select clear
    4425 
    4426 > hide #!9 atoms
    4427 
    4428 > show #!10 models
    4429 
    4430 > hide #!10 models
    4431 
    4432 > hide #!9 models
    4433 
    4434 > show #!9 models
    4435 
    4436 > hide #!9 models
    4437 
    4438 > show #!10 models
    4439 
    4440 > show #!9 models
    4441 
    4442 > hide #!10 models
    4443 
    4444 > show #!10 models
    4445 
    4446 > hide #!9 models
    4447 
    4448 > show #!9 models
    4449 
    4450 > combine #9
    4451 
    4452 > select #10/0 #10/B #10/C #10/D #10/E #10/K #10/O #10/Z #10/W #10/c #10/f
    4453 > #10/m #10/r #10/u #10/v #10/x #10/y
    4454 
    4455 258 atoms, 257 bonds, 18 residues, 1 model selected 
    4456 
    4457 > select #11/0 #11/B #11/C #11/D #11/E #11/K #11/O #11/Z #11/W #11/c #11/f
    4458 > #11/m #11/r #11/u #11/v #11/x #11/y
    4459 
    4460 10130 atoms, 10129 bonds, 5 pseudobonds, 652 residues, 2 models selected 
    4461 
    4462 > delete atoms (#!11 & sel)
    4463 
    4464 > delete bonds (#!11 & sel)
    4465 
    4466 > hide #!9 models
    4467 
    4468 > hide #!10 models
    4469 
    4470 > hide #!11 models
    4471 
    4472 > show #!10 models
    4473 
    4474 > show #!11 models
    4475 
    4476 > hide #!10 models
    4477 
    4478 > show #!10 models
    4479 
    4480 > select clear
    4481 
    4482 [Repeated 2 time(s)]Drag select of 1 residues 
    4483 Drag select of 17 residues 
    4484 Drag select of 1 residues 
    4485 Drag select of 18 residues 
    4486 
    4487 > delete atoms sel
    4488 
    4489 > delete bonds sel
    4490 
    4491 > select clear
    4492 
    4493 Drag select of 36 residues 
    4494 [Repeated 1 time(s)]
    4495 
    4496 > delete atoms sel
    4497 
    4498 > delete bonds sel
    4499 
    4500 > hide #!10 models
    4501 
    4502 Drag select of 93 residues 
    4503 
    4504 > delete atoms sel
    4505 
    4506 > delete bonds sel
    4507 
    4508 Drag select of 16 residues, 2 pseudobonds 
    4509 
    4510 > delete atoms (#!11 & sel)
    4511 
    4512 > delete bonds (#!11 & sel)
    4513 
    4514 > select clear
    4515 
    4516 Drag select of 70 residues, 2 pseudobonds 
    4517 
    4518 > delete atoms (#!11 & sel)
    4519 
    4520 > delete bonds (#!11 & sel)
    4521 
    4522 Drag select of 38 residues, 1 pseudobonds 
    4523 Drag select of 11 residues, 1 pseudobonds 
    4524 
    4525 > select clear
    4526 
    4527 Drag select of 39 residues, 1 pseudobonds 
    4528 
    4529 > delete atoms (#!11 & sel)
    4530 
    4531 > delete bonds (#!11 & sel)
    4532 
    4533 > show #!10 models
    4534 
    4535 > select clear
    4536 
    4537 [Repeated 1 time(s)]Drag select of 1 residues 
    4538 
    4539 > hide #!11 models
    4540 
    4541 > show #!11 models
    4542 
    4543 > hide #!11 models
    4544 
    4545 Drag select of 7 residues 
    4546 
    4547 > delete atoms sel
    4548 
    4549 > delete bonds sel
    4550 
    4551 Drag select of 25 residues 
    4552 Drag select of 27 residues 
    4553 
    4554 > delete atoms sel
    4555 
    4556 > delete bonds sel
    4557 
    4558 > show #!11 models
    4559 
    4560 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    4561 > MRCLaboratoryofMolecularBiology/Documents/Carter
    4562 > Lab/Diorge/Membranes/Fit14-5.cxs"
    4563 
    4564 > show #!8 models
    4565 
    4566 > select add #10
    4567 
    4568 2037 atoms, 2039 bonds, 1 pseudobond, 129 residues, 2 models selected 
    4569 
    4570 > ui mousemode right "rotate selected models"
    4571 
    4572 > show #!9 models
    4573 
    4574 > hide #!9 models
    4575 
    4576 > view matrix models
    4577 > #10,0.99998,-0.0017193,-0.0064913,1.6578,0.0016839,0.99998,-0.0054568,0.77778,0.0065006,0.0054457,0.99996,-2.3417
    4578 
    4579 > ui mousemode right "translate selected models"
    4580 
    4581 > view matrix models
    4582 > #10,0.99998,-0.0017193,-0.0064913,4.9937,0.0016839,0.99998,-0.0054568,32.861,0.0065006,0.0054457,0.99996,-0.56089
    4583 
    4584 > ui tool show "Fit in Map"
    4585 
    4586 > fitmap #10 inMap #8
    4587 
    4588 Fit molecule copy of pointy-1pf.pdb (#10) to map
    4589 postprocess_masked330_onepf.mrc (#8) using 2037 atoms 
    4590 average map value = 0.01321, steps = 88 
    4591 shifted from previous position = 5.75 
    4592 rotated from previous position = 13.7 degrees 
    4593 atoms outside contour = 1178, contour level = 0.012786 
    4594  
    4595 Position of copy of pointy-1pf.pdb (#10) relative to
    4596 postprocess_masked330_onepf.mrc (#8) coordinates: 
    4597 Matrix rotation and translation 
    4598 0.97062574 -0.22669817 -0.08058301 64.51398236 
    4599 0.22679610 0.97390894 -0.00805680 -13.33421311 
    4600 0.08030698 -0.01045578 0.99671534 -13.24222148 
    4601 Axis -0.00498547 -0.33435525 0.94243393 
    4602 Axis point 102.28672450 271.14374672 0.00000000 
    4603 Rotation angle (degrees) 13.92180079 
    4604 Shift along axis -8.34318700 
    4605  
    4606 
    4607 > select add #11
    4608 
    4609 3132 atoms, 3134 bonds, 3 pseudobonds, 201 residues, 4 models selected 
    4610 
    4611 > ui mousemode right "rotate selected models"
    4612 
    4613 > view matrix models
    4614 > #10,0.99615,-0.057833,-0.065911,22.716,0.054982,0.9975,-0.044282,24.659,0.068307,0.040488,0.99684,-20.876,#11,0.98532,0.17016,0.01409,-38.101,-0.16927,0.9843,-0.049945,48.006,-0.022368,0.046826,0.99865,-5.7061
    4615 
    4616 > undo
    4617 
    4618 > select subtract #10
    4619 
    4620 1095 atoms, 1095 bonds, 2 pseudobonds, 72 residues, 2 models selected 
    4621 
    4622 > view matrix models
    4623 > #11,0.9986,0.052796,0.001443,-12.494,-0.052798,0.99719,0.053213,0.7351,0.0013705,-0.053215,0.99858,12.593
    4624 
    4625 > undo
    4626 
    4627 > ui mousemode right "translate selected models"
    4628 
    4629 > view matrix models #11,1,0,0,4.5444,0,1,0,-22.619,0,0,1,-1.1339
    4630 
    4631 > ui mousemode right "rotate selected models"
    4632 
    4633 > view matrix models
    4634 > #11,0.98418,0.17659,0.014456,-36.92,-0.17563,0.98309,-0.051887,25.356,-0.023374,0.048527,0.99855,-7.8023
    4635 
    4636 > ui mousemode right "translate selected models"
    4637 
    4638 > view matrix models
    4639 > #11,0.98418,0.17659,0.014456,-34.436,-0.17563,0.98309,-0.051887,10.304,-0.023374,0.048527,0.99855,-8.7109
    4640 
    4641 > ui mousemode right "rotate selected models"
    4642 
    4643 > view matrix models
    4644 > #11,0.96876,0.24739,0.017664,-48.806,-0.2455,0.9666,-0.073577,31.899,-0.035276,0.066942,0.99713,-10.488
    4645 
    4646 > ui mousemode right "translate selected models"
    4647 
    4648 > view matrix models
    4649 > #11,0.96876,0.24739,0.017664,-48.403,-0.2455,0.9666,-0.073577,33.323,-0.035276,0.066942,0.99713,-10.22
    4650 
    4651 > view matrix models
    4652 > #11,0.96876,0.24739,0.017664,-49.108,-0.2455,0.9666,-0.073577,37.059,-0.035276,0.066942,0.99713,-10.324
    4653 
    4654 > hide #!11 models
    4655 
    4656 > show #!11 models
    4657 
    4658 > combine #11
    4659 
    4660 > hide #!11 models
    4661 
    4662 > select subtract #11
    4663 
    4664 Nothing selected 
    4665 
    4666 > select add #12
    4667 
    4668 1095 atoms, 1095 bonds, 2 pseudobonds, 72 residues, 2 models selected 
    4669 
    4670 > delete #12/6
    4671 
    4672 > ui mousemode right "rotate selected models"
    4673 
    4674 > view matrix models
    4675 > #12,0.93263,0.33122,-0.14314,-29.786,-0.32763,0.94355,0.048652,34.872,0.15117,0.0015234,0.98851,-30.775
    4676 
    4677 > undo
    4678 
    4679 > view matrix models
    4680 > #12,0.93679,0.34915,0.022882,-66.366,-0.34379,0.93062,-0.12551,74.259,-0.065117,0.10971,0.99183,-12.922
    4681 
    4682 > ui mousemode right "translate selected models"
    4683 
    4684 > view matrix models
    4685 > #12,0.93679,0.34915,0.022882,-65.552,-0.34379,0.93062,-0.12551,76.921,-0.065117,0.10971,0.99183,-12.138
    4686 
    4687 > ui mousemode right "rotate selected models"
    4688 
    4689 > view matrix models
    4690 > #12,0.87243,0.47936,0.095312,-95.623,-0.47749,0.87758,-0.042965,99.092,-0.10424,-0.0080268,0.99452,21.092
    4691 
    4692 > ui mousemode right "translate selected models"
    4693 
    4694 > view matrix models
    4695 > #12,0.87243,0.47936,0.095312,-97.207,-0.47749,0.87758,-0.042965,100.19,-0.10424,-0.0080268,0.99452,22.801
    4696 
    4697 > view matrix models
    4698 > #12,0.87243,0.47936,0.095312,-98.832,-0.47749,0.87758,-0.042965,100.5,-0.10424,-0.0080268,0.99452,23.468
    4699 
    4700 > undo
    4701 
    4702 [Repeated 2 time(s)]
    4703 
    4704 > view matrix models
    4705 > #12,0.93679,0.34915,0.022882,-66.018,-0.34379,0.93062,-0.12551,77.066,-0.065117,0.10971,0.99183,-12.047
    4706 
    4707 > combine #12
    4708 
    4709 > hide #!10 models
    4710 
    4711 > show #!10 models
    4712 
    4713 > combine #12
    4714 
    4715 > hide #!12 models
    4716 
    4717 > hide #!10 models
    4718 
    4719 > hide #!8 models
    4720 
    4721 > hide #!13 models
    4722 
    4723 > select clear
    4724 
    4725 > show #!8 models
    4726 
    4727 > hide #!8 models
    4728 
    4729 > ui mousemode right select
    4730 
    4731 Drag select of 7 residues 
    4732 [Repeated 1 time(s)]
    4733 
    4734 > delete atoms sel
    4735 
    4736 > delete bonds sel
    4737 
    4738 > show #!13 models
    4739 
    4740 > hide #!14 models
    4741 
    4742 > select clear
    4743 
    4744 Drag select of 28 residues 
    4745 
    4746 > delete atoms sel
    4747 
    4748 > delete bonds sel
    4749 
    4750 > show #!14 models
    4751 
    4752 > show #!8 models
    4753 
    4754 > select add #14
    4755 
    4756 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    4757 
    4758 > ui mousemode right "rotate selected models"
    4759 
    4760 > view matrix models
    4761 > #14,0.88061,0.46512,0.090494,-92.966,-0.46951,0.88226,0.034248,81.396,-0.06391,-0.072648,0.99531,26.293
    4762 
    4763 > ui mousemode right "translate selected models"
    4764 
    4765 > view matrix models
    4766 > #14,0.88061,0.46512,0.090494,-93.826,-0.46951,0.88226,0.034248,82.406,-0.06391,-0.072648,0.99531,28.026
    4767 
    4768 > ui mousemode right "rotate selected models"
    4769 
    4770 > view matrix models
    4771 > #14,0.92575,0.31612,0.20748,-92.932,-0.36494,0.89059,0.27141,14.887,-0.098979,-0.32697,0.93984,100.19
    4772 
    4773 > view matrix models
    4774 > #14,0.90043,0.36759,0.23259,-103.88,-0.41862,0.87759,0.23364,35.361,-0.11823,-0.30774,0.94409,98.989
    4775 
    4776 > ui mousemode right "translate selected models"
    4777 
    4778 > view matrix models
    4779 > #14,0.90043,0.36759,0.23259,-104.15,-0.41862,0.87759,0.23364,36.227,-0.11823,-0.30774,0.94409,100.78
    4780 
    4781 > view matrix models
    4782 > #14,0.90043,0.36759,0.23259,-103.34,-0.41862,0.87759,0.23364,35.85,-0.11823,-0.30774,0.94409,101.42
    4783 
    4784 > view matrix models
    4785 > #14,0.90043,0.36759,0.23259,-103.31,-0.41862,0.87759,0.23364,35.606,-0.11823,-0.30774,0.94409,101.97
    4786 
    4787 > view matrix models
    4788 > #14,0.90043,0.36759,0.23259,-104.03,-0.41862,0.87759,0.23364,34.842,-0.11823,-0.30774,0.94409,101.97
    4789 
    4790 > ui mousemode right "rotate selected models"
    4791 
    4792 > view matrix models
    4793 > #14,0.89792,0.32638,0.29531,-106.67,-0.41573,0.84925,0.32548,22.811,-0.14456,-0.41502,0.89825,138.95
    4794 
    4795 > ui mousemode right "translate selected models"
    4796 
    4797 > view matrix models
    4798 > #14,0.89792,0.32638,0.29531,-106.98,-0.41573,0.84925,0.32548,23.456,-0.14456,-0.41502,0.89825,139.1
    4799 
    4800 > ui mousemode right "translate selected models"
    4801 
    4802 > view matrix models
    4803 > #14,0.89792,0.32638,0.29531,-106.41,-0.41573,0.84925,0.32548,22.589,-0.14456,-0.41502,0.89825,139.3
    4804 
    4805 > view matrix models
    4806 > #14,0.89792,0.32638,0.29531,-106.29,-0.41573,0.84925,0.32548,22.829,-0.14456,-0.41502,0.89825,139.33
    4807 
    4808 > view matrix models
    4809 > #14,0.89792,0.32638,0.29531,-106.57,-0.41573,0.84925,0.32548,22.449,-0.14456,-0.41502,0.89825,139.36
    4810 
    4811 > ui mousemode right "translate selected models"
    4812 
    4813 > view matrix models
    4814 > #14,0.89792,0.32638,0.29531,-105.23,-0.41573,0.84925,0.32548,22.767,-0.14456,-0.41502,0.89825,139.81
    4815 
    4816 > view matrix models
    4817 > #14,0.89792,0.32638,0.29531,-106.08,-0.41573,0.84925,0.32548,24.179,-0.14456,-0.41502,0.89825,138.73
    4818 
    4819 > ui mousemode right "rotate selected models"
    4820 
    4821 > view matrix models
    4822 > #14,0.89263,0.44788,0.051088,-84.482,-0.42587,0.8007,0.42132,18.267,0.1478,-0.39784,0.90547,76.719
    4823 
    4824 > ui mousemode right "translate selected models"
    4825 
    4826 > view matrix models
    4827 > #14,0.89263,0.44788,0.051088,-84.764,-0.42587,0.8007,0.42132,17.578,0.1478,-0.39784,0.90547,76.711
    4828 
    4829 > select add #13
    4830 
    4831 547 atoms, 545 bonds, 2 pseudobonds, 37 residues, 4 models selected 
    4832 
    4833 > select subtract #14
    4834 
    4835 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    4836 
    4837 > view matrix models
    4838 > #13,0.93679,0.34915,0.022882,-64.922,-0.34379,0.93062,-0.12551,77.887,-0.065117,0.10971,0.99183,-11.734
    4839 
    4840 > view matrix models
    4841 > #13,0.93679,0.34915,0.022882,-64.935,-0.34379,0.93062,-0.12551,77.641,-0.065117,0.10971,0.99183,-11.25
    4842 
    4843 > show #!12 models
    4844 
    4845 > hide #!13 models
    4846 
    4847 > show #!13 models
    4848 
    4849 > hide #!12 models
    4850 
    4851 > show #!12 models
    4852 
    4853 > hide #!12 models
    4854 
    4855 > show #!11 models
    4856 
    4857 > hide #!11 models
    4858 
    4859 > show #!10 models
    4860 
    4861 > hide #!8 models
    4862 
    4863 > hide #!13 models
    4864 
    4865 > hide #!14 models
    4866 
    4867 > show #!8 models
    4868 
    4869 > hide #!8 models
    4870 
    4871 > ui mousemode right select
    4872 
    4873 Drag select of 72 residues, 1 pseudobonds 
    4874 
    4875 > fitmap sel inMap #8
    4876 
    4877 Fit molecule copy of pointy-1pf.pdb (#10) to map
    4878 postprocess_masked330_onepf.mrc (#8) using 1140 atoms 
    4879 average map value = 0.0153, steps = 56 
    4880 shifted from previous position = 2.41 
    4881 rotated from previous position = 2.89 degrees 
    4882 atoms outside contour = 542, contour level = 0.012786 
    4883  
    4884 Position of copy of pointy-1pf.pdb (#10) relative to
    4885 postprocess_masked330_onepf.mrc (#8) coordinates: 
    4886 Matrix rotation and translation 
    4887 0.97590189 -0.21591907 -0.03153500 49.29669495 
    4888 0.21583685 0.97641083 -0.00602921 -10.79027973 
    4889 0.03209294 -0.00092249 0.99948446 -5.77232566 
    4890 Axis 0.01170061 -0.14578548 0.98924703 
    4891 Axis point 76.43879761 219.97280243 0.00000000 
    4892 Rotation angle (degrees) 12.60477192 
    4893 Shift along axis -3.56038854 
    4894  
    4895 
    4896 > show #!8 models
    4897 
    4898 > combine #8
    4899 
    4900 No structures specified 
    4901 
    4902 > select clear
    4903 
    4904 > combine #10
    4905 
    4906 [Repeated 1 time(s)]
    4907 
    4908 > hide #!10 models
    4909 
    4910 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    4911 > MRCLaboratoryofMolecularBiology/Documents/Carter
    4912 > Lab/Diorge/Membranes/Fit14-5.cxs"
    4913 
    4914 > hide #!8 models
    4915 
    4916 > show #!8 models
    4917 
    4918 > select #15/6:89
    4919 
    4920 19 atoms, 18 bonds, 1 residue, 1 model selected 
    4921 
    4922 > select #15/6:86
    4923 
    4924 19 atoms, 18 bonds, 1 residue, 1 model selected 
    4925 
    4926 > hide #!8 models
    4927 
    4928 Drag select of 160 residues, 2 pseudobonds 
    4929 
    4930 > select add #16
    4931 
    4932 3308 atoms, 2039 bonds, 2 pseudobonds, 209 residues, 4 models selected 
    4933 
    4934 > hide #!16 models
    4935 
    4936 Drag select of 83 residues, 1 pseudobonds 
    4937 
    4938 > delete atoms (#!15 & sel)
    4939 
    4940 > delete bonds (#!15 & sel)
    4941 
    4942 Drag select of 16 residues 
    4943 
    4944 > delete atoms sel
    4945 
    4946 > delete bonds sel
    4947 
    4948 > show #!16 models
    4949 
    4950 > hide #!16 models
    4951 
    4952 > show #!16 models
    4953 
    4954 > hide #!15 models
    4955 
    4956 Drag select of 30 residues 
    4957 
    4958 > show #!15 models
    4959 
    4960 > hide #!15 models
    4961 
    4962 > show #!15 models
    4963 
    4964 > hide #!16 models
    4965 
    4966 > show #!16 models
    4967 
    4968 > hide #!15 models
    4969 
    4970 > delete atoms sel
    4971 
    4972 > delete bonds sel
    4973 
    4974 > show #!15 models
    4975 
    4976 > show #!8 models
    4977 
    4978 > select add #16
    4979 
    4980 1587 atoms, 1589 bonds, 1 pseudobond, 99 residues, 2 models selected 
    4981 
    4982 > select subtract #16
    4983 
    4984 Nothing selected 
    4985 
    4986 > select add #15
    4987 
    4988 450 atoms, 449 bonds, 30 residues, 1 model selected 
    4989 
    4990 > ui mousemode right "rotate selected models"
    4991 
    4992 > view matrix models
    4993 > #15,0.97976,-0.19824,-0.027689,44.01,0.19866,0.97998,0.013189,-12.047,0.02452,-0.018423,0.99953,-0.67882
    4994 
    4995 > ui mousemode right select
    4996 
    4997 > select clear
    4998 
    4999 > select #15/6:89
    5000 
    5001 19 atoms, 18 bonds, 1 residue, 1 model selected 
    5002 
    5003 > cofr sel
    5004 
    5005 > ui mousemode right "rotate selected models"
    5006 
    5007 > view matrix models
    5008 > #15,0.98557,-0.16785,-0.021724,35.43,0.1687,0.98459,0.046122,-13.757,0.013648,-0.049121,0.9987,7.9206
    5009 
    5010 > ui mousemode right "translate selected models"
    5011 
    5012 > view matrix models
    5013 > #15,0.98557,-0.16785,-0.021724,36.44,0.1687,0.98459,0.046122,-12.863,0.013648,-0.049121,0.9987,7.0215
    5014 
    5015 > ui mousemode right "rotate selected models"
    5016 
    5017 > view matrix models
    5018 > #15,0.99639,0.062188,0.057872,-28.936,-0.076331,0.95439,0.28864,-7.5126,-0.037282,-0.29202,0.95569,75.528
    5019 
    5020 > view matrix models
    5021 > #15,0.99938,-0.01956,0.029443,-6.9827,0.0071557,0.92764,0.3734,-34.66,-0.034616,-0.37296,0.9272,97.387
    5022 
    5023 > ui mousemode right "translate selected models"
    5024 
    5025 > view matrix models
    5026 > #15,0.99938,-0.01956,0.029443,-2.322,0.0071557,0.92764,0.3734,-36.356,-0.034616,-0.37296,0.9272,92.289
    5027 
    5028 > ui mousemode right "rotate selected models"
    5029 
    5030 > view matrix models
    5031 > #15,0.99979,-0.0091114,0.018457,-2.399,0.0019438,0.93448,0.35601,-33.347,-0.020492,-0.3559,0.9343,84.658
    5032 
    5033 > view matrix models
    5034 > #15,0.8654,0.03289,-0.5,116.81,0.030703,0.99249,0.11843,-4.0334,0.50014,-0.11784,0.85789,-49.212
    5035 
    5036 > view matrix models
    5037 > #15,0.86729,0.020575,-0.49738,118.48,0.070878,0.98386,0.16429,-18.977,0.49273,-0.17774,0.85184,-34.201
    5038 
    5039 > view matrix models
    5040 > #15,0.82256,0.063947,-0.56508,131.41,-0.034952,0.99746,0.061999,18.624,0.56761,-0.031247,0.8227,-73.116
    5041 
    5042 > ui mousemode right "translate selected models"
    5043 
    5044 > view matrix models
    5045 > #15,0.82256,0.063947,-0.56508,131.3,-0.034952,0.99746,0.061999,19.65,0.56761,-0.031247,0.8227,-71.575
    5046 
    5047 > view matrix models
    5048 > #15,0.82256,0.063947,-0.56508,134.13,-0.034952,0.99746,0.061999,22.363,0.56761,-0.031247,0.8227,-71.673
    5049 
    5050 > view matrix models
    5051 > #15,0.82256,0.063947,-0.56508,134.85,-0.034952,0.99746,0.061999,20.691,0.56761,-0.031247,0.8227,-71.319
    5052 
    5053 > view matrix models
    5054 > #15,0.82256,0.063947,-0.56508,134.53,-0.034952,0.99746,0.061999,20.424,0.56761,-0.031247,0.8227,-71.287
    5055 
    5056 > view matrix models
    5057 > #15,0.82256,0.063947,-0.56508,134.78,-0.034952,0.99746,0.061999,20.007,0.56761,-0.031247,0.8227,-71.26
    5058 
    5059 > view matrix models
    5060 > #15,0.82256,0.063947,-0.56508,136.2,-0.034952,0.99746,0.061999,20.41,0.56761,-0.031247,0.8227,-70.442
    5061 
    5062 > view matrix models
    5063 > #15,0.82256,0.063947,-0.56508,135.64,-0.034952,0.99746,0.061999,21.291,0.56761,-0.031247,0.8227,-70.497
    5064 
    5065 > view matrix models
    5066 > #15,0.82256,0.063947,-0.56508,135.96,-0.034952,0.99746,0.061999,21.557,0.56761,-0.031247,0.8227,-70.372
    5067 
    5068 > ui mousemode right "rotate selected models"
    5069 
    5070 > view matrix models
    5071 > #15,0.83031,-0.0029369,-0.5573,146.79,0.040958,0.9976,0.055765,8.2273,0.5558,-0.069127,0.82844,-61.4
    5072 
    5073 > ui mousemode right "translate selected models"
    5074 
    5075 > view matrix models
    5076 > #15,0.83031,-0.0029369,-0.5573,146.12,0.040958,0.9976,0.055765,7.4138,0.5558,-0.069127,0.82844,-61.602
    5077 
    5078 > show #!14 models
    5079 
    5080 > show #!13 models
    5081 
    5082 > select clear
    5083 
    5084 > hide #!8 models
    5085 
    5086 > hide #!16 models
    5087 
    5088 > combine #16
    5089 
    5090 [Repeated 1 time(s)]
    5091 
    5092 > hide #!15 models
    5093 
    5094 > hide #!14 models
    5095 
    5096 > hide #!13 models
    5097 
    5098 > show #!8 models
    5099 
    5100 > hide #!8 models
    5101 
    5102 > ui mousemode right select
    5103 
    5104 > select #17/6:16
    5105 
    5106 12 atoms, 11 bonds, 1 residue, 1 model selected 
    5107 
    5108 > show #!8 models
    5109 
    5110 > hide #!8 models
    5111 
    5112 > select #17/6:17
    5113 
    5114 10 atoms, 9 bonds, 1 residue, 1 model selected 
    5115 
    5116 > select #17/6:18
    5117 
    5118 19 atoms, 18 bonds, 1 residue, 1 model selected 
    5119 
    5120 > hide #!18 models
    5121 
    5122 Drag select of 84 residues, 1 pseudobonds 
    5123 
    5124 > delete atoms (#!17 & sel)
    5125 
    5126 > delete bonds (#!17 & sel)
    5127 
    5128 > show #!18 models
    5129 
    5130 > hide #!17 models
    5131 
    5132 Drag select of 15 residues 
    5133 
    5134 > delete atoms sel
    5135 
    5136 > delete bonds sel
    5137 
    5138 > show #!17 models
    5139 
    5140 > show #!8 models
    5141 
    5142 > select add #18
    5143 
    5144 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    5145 
    5146 > select add #17
    5147 
    5148 1587 atoms, 1588 bonds, 1 pseudobond, 99 residues, 3 models selected 
    5149 
    5150 > select subtract #18
    5151 
    5152 257 atoms, 259 bonds, 15 residues, 1 model selected 
    5153 
    5154 > ui mousemode right "rotate selected models"
    5155 
    5156 > view matrix models
    5157 > #17,0.78377,-0.61464,0.088966,135.07,0.61128,0.7888,0.06432,-61.396,-0.10971,0.0039707,0.99396,20.211
    5158 
    5159 > ui mousemode right "translate selected models"
    5160 
    5161 > view matrix models
    5162 > #17,0.78377,-0.61464,0.088966,133.07,0.61128,0.7888,0.06432,-66,-0.10971,0.0039707,0.99396,21.314
    5163 
    5164 > ui mousemode right "rotate selected models"
    5165 
    5166 > view matrix models
    5167 > #17,0.66001,-0.74079,0.125,172.11,0.73369,0.67136,0.10476,-74.213,-0.16153,0.022564,0.98661,28.696
    5168 
    5169 > ui mousemode right "translate selected models"
    5170 
    5171 > view matrix models
    5172 > #17,0.66001,-0.74079,0.125,172.04,0.73369,0.67136,0.10476,-76.053,-0.16153,0.022564,0.98661,29.229
    5173 
    5174 > view matrix models
    5175 > #17,0.66001,-0.74079,0.125,172.32,0.73369,0.67136,0.10476,-76.161,-0.16153,0.022564,0.98661,29.339
    5176 
    5177 > view matrix models
    5178 > #17,0.66001,-0.74079,0.125,172.68,0.73369,0.67136,0.10476,-76.498,-0.16153,0.022564,0.98661,28.844
    5179 
    5180 > view matrix models
    5181 > #17,0.66001,-0.74079,0.125,172.34,0.73369,0.67136,0.10476,-76.869,-0.16153,0.022564,0.98661,28.925
    5182 
    5183 > select clear
    5184 
    5185 > show #!15 models
    5186 
    5187 > show #!14 models
    5188 
    5189 > show #!13 models
    5190 
    5191 > select add #13
    5192 
    5193 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    5194 
    5195 > select add #14
    5196 
    5197 547 atoms, 545 bonds, 2 pseudobonds, 37 residues, 4 models selected 
    5198 
    5199 > select add #15
    5200 
    5201 997 atoms, 994 bonds, 2 pseudobonds, 67 residues, 5 models selected 
    5202 
    5203 > select add #17
    5204 
    5205 1254 atoms, 1253 bonds, 2 pseudobonds, 82 residues, 6 models selected 
    5206 
    5207 > select add #18
    5208 
    5209 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 8 models selected 
    5210 
    5211 > color (#!13-15,17-18 & sel) red
    5212 
    5213 > select clear
    5214 
    5215 > combine #13,14,15,17,18
    5216 
    5217 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    5218 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    5219 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    5220 
    5221 > hide #!18 models
    5222 
    5223 > hide #!17 models
    5224 
    5225 > hide #!15 models
    5226 
    5227 > hide #!14 models
    5228 
    5229 > hide #!13 models
    5230 
    5231 > color #19 #ff7e79ff
    5232 
    5233 > combine 19
    5234 
    5235 Expected a keyword 
    5236 
    5237 > combine #19
    5238 
    5239 > color #20 #008f00ff
    5240 
    5241 > color #20 #9437ffff
    5242 
    5243 > select add #20
    5244 
    5245 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    5246 
    5247 > ui mousemode right "translate selected models"
    5248 
    5249 > view matrix models
    5250 > #20,0.93679,0.34915,0.022882,-70.141,-0.34379,0.93062,-0.12551,53.67,-0.065117,0.10971,0.99183,-14.077
    5251 
    5252 > ui mousemode right "rotate selected models"
    5253 
    5254 > view matrix models
    5255 > #20,0.8241,0.56635,0.0098521,-97.03,-0.55779,0.81442,-0.16,129.49,-0.09864,0.12636,0.98707,-10.564
    5256 
    5257 > ui mousemode right "translate selected models"
    5258 
    5259 > view matrix models
    5260 > #20,0.8241,0.56635,0.0098521,-88.629,-0.55779,0.81442,-0.16,126.94,-0.09864,0.12636,0.98707,-9.7441
    5261 
    5262 > view matrix models
    5263 > #20,0.8241,0.56635,0.0098521,-89.664,-0.55779,0.81442,-0.16,125.88,-0.09864,0.12636,0.98707,-6.1392
    5264 
    5265 > view matrix models
    5266 > #20,0.8241,0.56635,0.0098521,-88.33,-0.55779,0.81442,-0.16,128.35,-0.09864,0.12636,0.98707,-5.3443
    5267 
    5268 > fitmap sel inMap #8
    5269 
    5270 Fit molecule copy of combination (#20) to map postprocess_masked330_onepf.mrc
    5271 (#8) using 2584 atoms 
    5272 average map value = 0.01163, steps = 168 
    5273 shifted from previous position = 3.43 
    5274 rotated from previous position = 13.2 degrees 
    5275 atoms outside contour = 1568, contour level = 0.012786 
    5276  
    5277 Position of copy of combination (#20) relative to
    5278 postprocess_masked330_onepf.mrc (#8) coordinates: 
    5279 Matrix rotation and translation 
    5280 0.92439362 0.37954996 -0.03792455 -57.45510482 
    5281 -0.37728563 0.89516156 -0.23736330 91.34262060 
    5282 -0.05614263 0.23372550 0.97068038 -36.87912351 
    5283 Axis 0.52832814 0.02043166 -0.84879440 
    5284 Axis point 188.37296334 192.81777858 0.00000000 
    5285 Rotation angle (degrees) 26.47643820 
    5286 Shift along axis 2.81392628 
    5287  
    5288 
    5289 > combine #19
    5290 
    5291 > color #21 #0096ffff
    5292 
    5293 > select add #21
    5294 
    5295 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    5296 
    5297 > view matrix models
    5298 > #20,0.92436,0.37972,-0.0371,-53.603,-0.37725,0.89516,-0.23743,106.41,-0.056945,0.23346,0.9707,-40.076,#21,0.93679,0.34915,0.022882,-60.761,-0.34379,0.93062,-0.12551,92.72,-0.065117,0.10971,0.99183,-14.673
    5299 
    5300 > undo
    5301 
    5302 > select subtract #20
    5303 
    5304 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    5305 
    5306 > view matrix models
    5307 > #21,0.93679,0.34915,0.022882,-59.462,-0.34379,0.93062,-0.12551,98.71,-0.065117,0.10971,0.99183,-16.055
    5308 
    5309 > view matrix models
    5310 > #21,0.93679,0.34915,0.022882,-60.654,-0.34379,0.93062,-0.12551,101.57,-0.065117,0.10971,0.99183,-10.64
    5311 
    5312 > fitmap sel inMap #8
    5313 
    5314 Fit molecule copy of combination (#21) to map postprocess_masked330_onepf.mrc
    5315 (#8) using 2584 atoms 
    5316 average map value = 0.01219, steps = 92 
    5317 shifted from previous position = 4.27 
    5318 rotated from previous position = 5.6 degrees 
    5319 atoms outside contour = 1553, contour level = 0.012786 
    5320  
    5321 Position of copy of combination (#21) relative to
    5322 postprocess_masked330_onepf.mrc (#8) coordinates: 
    5323 Matrix rotation and translation 
    5324 0.95025893 0.30332679 0.07071647 -66.28913387 
    5325 -0.30004401 0.95242850 -0.05341864 71.95351234 
    5326 -0.08355569 0.02954349 0.99606507 10.31568500 
    5327 Axis 0.13204590 0.24554584 -0.96034948 
    5328 Axis point 200.81968835 251.03991714 0.00000000 
    5329 Rotation angle (degrees) 18.30898039 
    5330 Shift along axis -0.99198576 
    5331  
    5332 
    5333 > view matrix models
    5334 > #21,0.9502,0.30332,0.071556,-65.022,-0.30001,0.95244,-0.053481,69.805,-0.084374,0.02935,0.996,11.042
    5335 
    5336 > view matrix models
    5337 > #21,0.9502,0.30332,0.071556,-65.229,-0.30001,0.95244,-0.053481,71.317,-0.084374,0.02935,0.996,11.032
    5338 
    5339 > view matrix models
    5340 > #21,0.9502,0.30332,0.071556,-64.727,-0.30001,0.95244,-0.053481,70.366,-0.084374,0.02935,0.996,9.1808
    5341 
    5342 > view matrix models
    5343 > #21,0.9502,0.30332,0.071556,-64.814,-0.30001,0.95244,-0.053481,70.357,-0.084374,0.02935,0.996,8.9663
    5344 
    5345 > ui mousemode right "rotate selected models"
    5346 
    5347 > view matrix models
    5348 > #21,0.91717,0.39769,-0.02539,-61.308,-0.39738,0.90794,-0.13315,115.68,-0.029899,0.13221,0.99077,-24.846
    5349 
    5350 > view matrix models
    5351 > #21,0.9324,0.36072,-0.022695,-56.062,-0.36067,0.92452,-0.12323,102.67,-0.023468,0.12308,0.99212,-24.205
    5352 
    5353 > ui mousemode right "translate selected models"
    5354 
    5355 > view matrix models
    5356 > #21,0.9324,0.36072,-0.022695,-55.654,-0.36067,0.92452,-0.12323,103.92,-0.023468,0.12308,0.99212,-24.145
    5357 
    5358 > view matrix models
    5359 > #21,0.9324,0.36072,-0.022695,-56.145,-0.36067,0.92452,-0.12323,104.45,-0.023468,0.12308,0.99212,-24.335
    5360 
    5361 > select add #20
    5362 
    5363 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    5364 
    5365 > select subtract #21
    5366 
    5367 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    5368 
    5369 > view matrix models
    5370 > #20,0.92436,0.37972,-0.0371,-59.693,-0.37725,0.89516,-0.23743,91.326,-0.056945,0.23346,0.9707,-37.055
    5371 
    5372 > view matrix models
    5373 > #20,0.92436,0.37972,-0.0371,-59.886,-0.37725,0.89516,-0.23743,91.193,-0.056945,0.23346,0.9707,-36.774
    5374 
    5375 > ui mousemode right "rotate selected models"
    5376 
    5377 > view matrix models
    5378 > #20,0.91631,0.39867,-0.037817,-62.664,-0.39911,0.90136,-0.16812,80.087,-0.032939,0.16914,0.98504,-29.096
    5379 
    5380 > ui mousemode right "translate selected models"
    5381 
    5382 > view matrix models
    5383 > #20,0.91631,0.39867,-0.037817,-62.865,-0.39911,0.90136,-0.16812,80.311,-0.032939,0.16914,0.98504,-28.342
    5384 
    5385 > ui mousemode right "rotate selected models"
    5386 
    5387 > view matrix models
    5388 > #20,0.89167,0.45141,0.033907,-84.913,-0.43907,0.88066,-0.17792,94.907,-0.11018,0.14376,0.98346,-7.0638
    5389 
    5390 > ui mousemode right "translate selected models"
    5391 
    5392 > view matrix models
    5393 > #20,0.89167,0.45141,0.033907,-84.674,-0.43907,0.88066,-0.17792,92.673,-0.11018,0.14376,0.98346,-7.8767
    5394 
    5395 > view matrix models
    5396 > #20,0.89167,0.45141,0.033907,-84.3,-0.43907,0.88066,-0.17792,93.071,-0.11018,0.14376,0.98346,-6.9835
    5397 
    5398 > ui mousemode right "rotate selected models"
    5399 
    5400 > view matrix models
    5401 > #20,0.88803,0.4578,0.042725,-86.868,-0.44339,0.87725,-0.18393,95.916,-0.12168,0.14439,0.98201,-4.6132
    5402 
    5403 > view matrix models
    5404 > #20,0.89696,0.44148,0.023867,-80.965,-0.42435,0.87481,-0.23375,102.78,-0.12407,0.19953,0.972,-15.178
    5405 
    5406 > ui mousemode right "translate selected models"
    5407 
    5408 > view matrix models
    5409 > #20,0.89696,0.44148,0.023867,-81.69,-0.42435,0.87481,-0.23375,104.67,-0.12407,0.19953,0.972,-15.328
    5410 
    5411 > hide #!8 models
    5412 
    5413 > ui mousemode right "rotate selected models"
    5414 
    5415 > ui mousemode right "translate selected models"
    5416 
    5417 > view matrix models
    5418 > #20,0.89696,0.44148,0.023867,-81.667,-0.42435,0.87481,-0.23375,103.93,-0.12407,0.19953,0.972,-16.378
    5419 
    5420 > ui mousemode right "rotate selected models"
    5421 
    5422 > view matrix models
    5423 > #20,0.94,0.33107,0.082477,-75.648,-0.30443,0.923,-0.23534,69.629,-0.15404,0.19611,0.96841,-9.0431
    5424 
    5425 > view matrix models
    5426 > #20,0.94123,0.33183,0.063079,-72.183,-0.30903,0.92138,-0.23572,70.98,-0.13634,0.20237,0.96977,-14.226
    5427 
    5428 > view matrix models
    5429 > #20,0.94021,0.33467,0.063257,-72.693,-0.31597,0.92639,-0.20484,64.958,-0.12716,0.17261,0.97675,-10.368
    5430 
    5431 > view matrix models
    5432 > #20,0.93962,0.3363,0.063349,-72.983,-0.31867,0.92732,-0.19626,63.543,-0.12475,0.16423,0.9785,-9.2045
    5433 
    5434 > view matrix models
    5435 > #20,0.93822,0.34079,0.060026,-73.107,-0.32929,0.93259,-0.14783,54.66,-0.10636,0.11893,0.98719,-3.8028
    5436 
    5437 > ui mousemode right "translate selected models"
    5438 
    5439 > view matrix models
    5440 > #20,0.93822,0.34079,0.060026,-73.292,-0.32929,0.93259,-0.14783,55.421,-0.10636,0.11893,0.98719,-2.5117
    5441 
    5442 > ui mousemode right "rotate selected models"
    5443 
    5444 > view matrix models
    5445 > #20,0.9497,0.30448,0.073256,-69.582,-0.29258,0.94606,-0.13916,43.389,-0.11168,0.11073,0.98756,0.38395
    5446 
    5447 > view matrix models
    5448 > #20,0.94849,0.30877,0.070897,-69.891,-0.29714,0.94467,-0.13892,44.556,-0.10987,0.1107,0.98776,-0.001063
    5449 
    5450 > view matrix models
    5451 > #20,0.94567,0.31821,0.066757,-70.745,-0.30806,0.94258,-0.129,45.177,-0.10397,0.10142,0.9894,0.7219
    5452 
    5453 > show #!8 models
    5454 
    5455 > view matrix models
    5456 > #20,0.92936,0.36557,0.051514,-75.725,-0.35548,0.92378,-0.14234,61.477,-0.099621,0.11397,0.98848,-2.9019
    5457 
    5458 > view matrix models
    5459 > #20,0.92327,0.38136,0.046197,-77.214,-0.37136,0.91683,-0.14667,67.064,-0.098291,0.11826,0.98811,-4.1
    5460 
    5461 > view matrix models
    5462 > #20,0.92924,0.36912,0.016295,-69.492,-0.3579,0.91019,-0.20846,78.394,-0.091778,0.18788,0.9779,-19.767
    5463 
    5464 > undo
    5465 
    5466 > select add #21
    5467 
    5468 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    5469 
    5470 > ui mousemode right "translate selected models"
    5471 
    5472 > view matrix models
    5473 > #20,0.92327,0.38136,0.046197,-77.837,-0.37136,0.91683,-0.14667,67.639,-0.098291,0.11826,0.98811,-2.3363,#21,0.9324,0.36072,-0.022695,-56.767,-0.36067,0.92452,-0.12323,105.03,-0.023468,0.12308,0.99212,-22.571
    5474 
    5475 > view matrix models
    5476 > #20,0.92327,0.38136,0.046197,-77.765,-0.37136,0.91683,-0.14667,67.833,-0.098291,0.11826,0.98811,-2.3147,#21,0.9324,0.36072,-0.022695,-56.696,-0.36067,0.92452,-0.12323,105.22,-0.023468,0.12308,0.99212,-22.549
    5477 
    5478 > hide #!8 models
    5479 
    5480 > show #!8 models
    5481 
    5482 > ui tool show "Side View"
    5483 
    5484 > select subtract #21
    5485 
    5486 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    5487 
    5488 > select subtract #20
    5489 
    5490 Nothing selected 
    5491 
    5492 > select add #20
    5493 
    5494 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    5495 
    5496 > view matrix models
    5497 > #20,0.92327,0.38136,0.046197,-77.016,-0.37136,0.91683,-0.14667,65.814,-0.098291,0.11826,0.98811,-4.6096
    5498 
    5499 > view matrix models
    5500 > #20,0.92327,0.38136,0.046197,-76.866,-0.37136,0.91683,-0.14667,68.048,-0.098291,0.11826,0.98811,-3.6456
    5501 
    5502 > view matrix models
    5503 > #20,0.92327,0.38136,0.046197,-75.924,-0.37136,0.91683,-0.14667,66.252,-0.098291,0.11826,0.98811,-4.2803
    5504 
    5505 > view matrix models
    5506 > #20,0.92327,0.38136,0.046197,-77.692,-0.37136,0.91683,-0.14667,66.173,-0.098291,0.11826,0.98811,-4.6729
    5507 
    5508 > view matrix models
    5509 > #20,0.92327,0.38136,0.046197,-76.514,-0.37136,0.91683,-0.14667,66.488,-0.098291,0.11826,0.98811,-5.0861
    5510 
    5511 > ui mousemode right "rotate selected models"
    5512 
    5513 > view matrix models
    5514 > #20,0.90412,0.4268,0.020284,-78.355,-0.42049,0.89717,-0.13516,78.347,-0.075885,0.11367,0.99062,-8.8437
    5515 
    5516 > ui mousemode right "translate selected models"
    5517 
    5518 > view matrix models
    5519 > #20,0.90412,0.4268,0.020284,-77.96,-0.42049,0.89717,-0.13516,79.576,-0.075885,0.11367,0.99062,-9.3827
    5520 
    5521 > ui mousemode right "rotate selected models"
    5522 
    5523 > view matrix models
    5524 > #20,0.90851,0.41751,0.017302,-76.017,-0.40685,0.89324,-0.19129,89.099,-0.09532,0.16675,0.98138,-16.312
    5525 
    5526 > ui mousemode right zoom
    5527 
    5528 > ui mousemode right "translate selected models"
    5529 
    5530 > view matrix models
    5531 > #20,0.90851,0.41751,0.017302,-76.618,-0.40685,0.89324,-0.19129,86.509,-0.09532,0.16675,0.98138,-15.331
    5532 
    5533 > view matrix models
    5534 > #20,0.90851,0.41751,0.017302,-76.634,-0.40685,0.89324,-0.19129,86.359,-0.09532,0.16675,0.98138,-15.254
    5535 
    5536 > view matrix models
    5537 > #20,0.90851,0.41751,0.017302,-75.857,-0.40685,0.89324,-0.19129,85.947,-0.09532,0.16675,0.98138,-14.345
    5538 
    5539 > view matrix models
    5540 > #20,0.90851,0.41751,0.017302,-77.034,-0.40685,0.89324,-0.19129,86.999,-0.09532,0.16675,0.98138,-14.711
    5541 
    5542 > view matrix models
    5543 > #20,0.90851,0.41751,0.017302,-76.114,-0.40685,0.89324,-0.19129,87.812,-0.09532,0.16675,0.98138,-15.451
    5544 
    5545 > ui mousemode right "rotate selected models"
    5546 
    5547 > view matrix models
    5548 > #20,0.89514,0.44564,-0.011272,-74.453,-0.44004,0.87928,-0.18229,95.739,-0.071324,0.16813,0.98318,-20.787
    5549 
    5550 > ui mousemode right "translate selected models"
    5551 
    5552 > view matrix models
    5553 > #20,0.89514,0.44564,-0.011272,-73.394,-0.44004,0.87928,-0.18229,96.666,-0.071324,0.16813,0.98318,-21.634
    5554 
    5555 > select add #21
    5556 
    5557 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    5558 
    5559 > select subtract #20
    5560 
    5561 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    5562 
    5563 > view matrix models
    5564 > #21,0.9324,0.36072,-0.022695,-56.166,-0.36067,0.92452,-0.12323,102.96,-0.023468,0.12308,0.99212,-22.706
    5565 
    5566 > view matrix models
    5567 > #21,0.9324,0.36072,-0.022695,-54.4,-0.36067,0.92452,-0.12323,102.66,-0.023468,0.12308,0.99212,-22.217
    5568 
    5569 > view matrix models
    5570 > #21,0.9324,0.36072,-0.022695,-54.36,-0.36067,0.92452,-0.12323,103.05,-0.023468,0.12308,0.99212,-21.933
    5571 
    5572 > view matrix models
    5573 > #21,0.9324,0.36072,-0.022695,-54.671,-0.36067,0.92452,-0.12323,101.58,-0.023468,0.12308,0.99212,-22.513
    5574 
    5575 > view matrix models
    5576 > #21,0.9324,0.36072,-0.022695,-54.209,-0.36067,0.92452,-0.12323,104.19,-0.023468,0.12308,0.99212,-22.5
    5577 
    5578 > view matrix models
    5579 > #21,0.9324,0.36072,-0.022695,-54.505,-0.36067,0.92452,-0.12323,105.16,-0.023468,0.12308,0.99212,-24.106
    5580 
    5581 > view matrix models
    5582 > #21,0.9324,0.36072,-0.022695,-54.09,-0.36067,0.92452,-0.12323,104.56,-0.023468,0.12308,0.99212,-25.558
    5583 
    5584 > view matrix models
    5585 > #21,0.9324,0.36072,-0.022695,-53.007,-0.36067,0.92452,-0.12323,104.54,-0.023468,0.12308,0.99212,-23.494
    5586 
    5587 > view matrix models
    5588 > #21,0.9324,0.36072,-0.022695,-52.381,-0.36067,0.92452,-0.12323,105.62,-0.023468,0.12308,0.99212,-24.046
    5589 
    5590 > view matrix models
    5591 > #21,0.9324,0.36072,-0.022695,-52.518,-0.36067,0.92452,-0.12323,105.62,-0.023468,0.12308,0.99212,-23.153
    5592 
    5593 > view matrix models
    5594 > #21,0.9324,0.36072,-0.022695,-52.737,-0.36067,0.92452,-0.12323,105.66,-0.023468,0.12308,0.99212,-22.644
    5595 
    5596 > select add #20
    5597 
    5598 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    5599 
    5600 > select subtract #21
    5601 
    5602 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    5603 
    5604 > view matrix models
    5605 > #20,0.89514,0.44564,-0.011272,-73.952,-0.44004,0.87928,-0.18229,96.641,-0.071324,0.16813,0.98318,-20.344
    5606 
    5607 > view matrix models
    5608 > #20,0.89514,0.44564,-0.011272,-74.165,-0.44004,0.87928,-0.18229,95.628,-0.071324,0.16813,0.98318,-20.497
    5609 
    5610 > view matrix models
    5611 > #20,0.89514,0.44564,-0.011272,-74.559,-0.44004,0.87928,-0.18229,96.11,-0.071324,0.16813,0.98318,-19.619
    5612 
    5613 > select add #21
    5614 
    5615 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    5616 
    5617 > select subtract #20
    5618 
    5619 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    5620 
    5621 > view matrix models
    5622 > #21,0.9324,0.36072,-0.022695,-53.029,-0.36067,0.92452,-0.12323,103.82,-0.023468,0.12308,0.99212,-22.764
    5623 
    5624 > select add #20
    5625 
    5626 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    5627 
    5628 > select subtract #21
    5629 
    5630 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    5631 
    5632 > view matrix models
    5633 > #20,0.89514,0.44564,-0.011272,-74.799,-0.44004,0.87928,-0.18229,94.578,-0.071324,0.16813,0.98318,-19.39
    5634 
    5635 > view matrix models
    5636 > #20,0.89514,0.44564,-0.011272,-73.933,-0.44004,0.87928,-0.18229,96.249,-0.071324,0.16813,0.98318,-19.936
    5637 
    5638 > combine #19
    5639 
    5640 > select add #22
    5641 
    5642 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    5643 
    5644 > select subtract #20
    5645 
    5646 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    5647 
    5648 > color #22 #00fa92ff
    5649 
    5650 > color #22 #d4fb79ff
    5651 
    5652 > color #22 #ff8ad8ff
    5653 
    5654 > color #22 #942193ff
    5655 
    5656 > color #22 #8efa00ff
    5657 
    5658 > color #22 #fffb00ff
    5659 
    5660 > view matrix models
    5661 > #22,0.93679,0.34915,0.022882,-73.916,-0.34379,0.93062,-0.12551,34.366,-0.065117,0.10971,0.99183,-13.158
    5662 
    5663 > ui mousemode right "rotate selected models"
    5664 
    5665 > view matrix models
    5666 > #22,0.82098,0.57014,-0.030517,-93.013,-0.56185,0.79722,-0.22082,127.21,-0.10157,0.19844,0.97484,-23.661
    5667 
    5668 > ui mousemode right "translate selected models"
    5669 
    5670 > ui mousemode right "rotate selected models"
    5671 
    5672 > view matrix models
    5673 > #22,0.80727,0.57753,-0.12153,-73.883,-0.59005,0.79414,-0.14557,118.34,0.012443,0.18922,0.98186,-44.976
    5674 
    5675 > ui mousemode right "translate selected models"
    5676 
    5677 > view matrix models
    5678 > #22,0.80727,0.57753,-0.12153,-71.721,-0.59005,0.79414,-0.14557,119.91,0.012443,0.18922,0.98186,-44.908
    5679 
    5680 > view matrix models
    5681 > #22,0.80727,0.57753,-0.12153,-70.655,-0.59005,0.79414,-0.14557,120.59,0.012443,0.18922,0.98186,-46.665
    5682 
    5683 > view matrix models
    5684 > #22,0.80727,0.57753,-0.12153,-70.883,-0.59005,0.79414,-0.14557,120.31,0.012443,0.18922,0.98186,-46.829
    5685 
    5686 > ui mousemode right "rotate selected models"
    5687 
    5688 > view matrix models
    5689 > #22,0.84348,0.45656,-0.283,-16.987,-0.52908,0.79717,-0.29084,136.86,0.092814,0.39505,0.91396,-97.445
    5690 
    5691 > ui mousemode right "translate selected models"
    5692 
    5693 > view matrix models
    5694 > #22,0.84348,0.45656,-0.283,-15.892,-0.52908,0.79717,-0.29084,136.57,0.092814,0.39505,0.91396,-97.767
    5695 
    5696 > hide #!22 models
    5697 
    5698 > show #!22 models
    5699 
    5700 > ui mousemode right "rotate selected models"
    5701 
    5702 > view matrix models
    5703 > #22,0.8479,0.43756,-0.29934,-8.9865,-0.52944,0.72819,-0.43524,181.85,0.027534,0.52752,0.8491,-103.44
    5704 
    5705 > view matrix models
    5706 > #22,0.89706,0.36372,-0.25098,-10.741,-0.44016,0.78598,-0.43417,150.68,0.039351,0.49995,0.86516,-102.43
    5707 
    5708 > ui mousemode right "translate selected models"
    5709 
    5710 > view matrix models
    5711 > #22,0.89706,0.36372,-0.25098,-12.167,-0.44016,0.78598,-0.43417,148.86,0.039351,0.49995,0.86516,-99.259
    5712 
    5713 > ui mousemode right "rotate selected models"
    5714 
    5715 > ui mousemode right "translate selected models"
    5716 
    5717 > view matrix models
    5718 > #22,0.89706,0.36372,-0.25098,-16.531,-0.44016,0.78598,-0.43417,129.11,0.039351,0.49995,0.86516,-97.114
    5719 
    5720 > hide #!22 models
    5721 
    5722 > hide #!21 models
    5723 
    5724 > hide #!20 models
    5725 
    5726 > hide #!19 models
    5727 
    5728 > select subtract #22
    5729 
    5730 Nothing selected 
    5731 
    5732 > show #!19 models
    5733 
    5734 > hide #!19 models
    5735 
    5736 > show #!18 models
    5737 
    5738 > show #!17 models
    5739 
    5740 > show #!14 models
    5741 
    5742 > show #!15 models
    5743 
    5744 > show #!13 models
    5745 
    5746 > hide #!13 models
    5747 
    5748 > show #!13 models
    5749 
    5750 > select clear
    5751 
    5752 > ui mousemode right select
    5753 
    5754 > select #15/6:114
    5755 
    5756 22 atoms, 21 bonds, 1 residue, 1 model selected 
    5757 
    5758 > show #!19 models
    5759 
    5760 > hide #!19 models
    5761 
    5762 > show #!20 models
    5763 
    5764 > show #!22 models
    5765 
    5766 > hide #!22 models
    5767 
    5768 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    5769 > MRCLaboratoryofMolecularBiology/Documents/Carter
    5770 > Lab/Diorge/Membranes/Fit14-6.cxs"
    5771 
    5772 > ui mousemode right "translate selected models"
    5773 
    5774 > hide #!20 models
    5775 
    5776 > hide #!17 models
    5777 
    5778 > show #!17 models
    5779 
    5780 > hide #!14 models
    5781 
    5782 > show #!14 models
    5783 
    5784 > hide #!13 models
    5785 
    5786 > show #!13 models
    5787 
    5788 > hide #!18 models
    5789 
    5790 > show #!18 models
    5791 
    5792 > hide #!18 models
    5793 
    5794 > show #!18 models
    5795 
    5796 > combine #18
    5797 
    5798 > select add #23
    5799 
    5800 1352 atoms, 1350 bonds, 1 pseudobond, 85 residues, 3 models selected 
    5801 
    5802 > select add #15
    5803 
    5804 1780 atoms, 1778 bonds, 1 pseudobond, 114 residues, 3 models selected 
    5805 
    5806 > select subtract #15
    5807 
    5808 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    5809 
    5810 > view matrix models
    5811 > #23,0.97592,-0.21595,-0.030694,43.672,0.21587,0.9764,-0.006095,-34.301,0.031286,-0.00067755,0.99951,-11.004
    5812 
    5813 > ui mousemode right "rotate selected models"
    5814 
    5815 > view matrix models
    5816 > #23,0.98307,-0.097449,-0.15514,48.287,0.10636,0.99306,0.050178,-25.527,0.14917,-0.065829,0.98662,-22.499
    5817 
    5818 > view matrix models
    5819 > #23,0.93089,-0.15194,-0.3322,105.32,0.091232,0.97728,-0.19133,30.593,0.35372,0.1478,0.9236,-88.479
    5820 
    5821 > ui mousemode right "translate selected models"
    5822 
    5823 > view matrix models
    5824 > #23,0.93089,-0.15194,-0.3322,110.35,0.091232,0.97728,-0.19133,32.494,0.35372,0.1478,0.9236,-85.958
    5825 
    5826 > view matrix models
    5827 > #23,0.93089,-0.15194,-0.3322,108.26,0.091232,0.97728,-0.19133,30.767,0.35372,0.1478,0.9236,-83.194
    5828 
    5829 > fitmap sel inMap #8
    5830 
    5831 Fit molecule copy of copy of copy of copy of pointy-1pf.pdb (#23) to map
    5832 postprocess_masked330_onepf.mrc (#8) using 1330 atoms 
    5833 average map value = 0.01238, steps = 88 
    5834 shifted from previous position = 2.35 
    5835 rotated from previous position = 12 degrees 
    5836 atoms outside contour = 789, contour level = 0.012786 
    5837  
    5838 Position of copy of copy of copy of copy of pointy-1pf.pdb (#23) relative to
    5839 postprocess_masked330_onepf.mrc (#8) coordinates: 
    5840 Matrix rotation and translation 
    5841 0.97599922 -0.14979710 -0.15807075 63.88156566 
    5842 0.13592121 0.98612789 -0.09527444 -1.63928013 
    5843 0.17014981 0.07150261 0.98282064 -43.66215117 
    5844 Axis 0.35787230 -0.70429986 0.61309797 
    5845 Axis point 283.77226195 0.00000000 367.27919177 
    5846 Rotation angle (degrees) 13.47446276 
    5847 Shift along axis -2.75318841 
    5848  
    5849 
    5850 > ui mousemode right "rotate selected models"
    5851 
    5852 > view matrix models
    5853 > #23,0.97014,-0.082217,-0.2282,68.333,0.06201,0.9936,-0.094363,12.61,0.2345,0.077394,0.96903,-55.443
    5854 
    5855 > ui mousemode right select
    5856 
    5857 > select #15/6:114
    5858 
    5859 22 atoms, 21 bonds, 1 residue, 1 model selected 
    5860 
    5861 > ui mousemode right "translate selected models"
    5862 
    5863 > color #23 #ebebebff
    5864 
    5865 > ui mousemode right "translate selected models"
    5866 
    5867 > view matrix models
    5868 > #15,0.83031,-0.0029369,-0.5573,145.91,0.040958,0.9976,0.055765,5.9943,0.5558,-0.069127,0.82844,-61.491
    5869 
    5870 > view matrix models
    5871 > #15,0.83031,-0.0029369,-0.5573,146.87,0.040958,0.9976,0.055765,-15.437,0.5558,-0.069127,0.82844,-62.735
    5872 
    5873 > view matrix models
    5874 > #15,0.83031,-0.0029369,-0.5573,148.42,0.040958,0.9976,0.055765,-14.85,0.5558,-0.069127,0.82844,-61.942
    5875 
    5876 > ui mousemode right "rotate selected models"
    5877 
    5878 > view matrix models
    5879 > #15,0.73144,0.29806,-0.61332,116.08,-0.31797,0.94473,0.079904,60.037,0.60324,0.13658,0.78578,-105.2
    5880 
    5881 > ui mousemode right "translate selected models"
    5882 
    5883 > view matrix models
    5884 > #15,0.73144,0.29806,-0.61332,121.21,-0.31797,0.94473,0.079904,62.292,0.60324,0.13658,0.78578,-102.65
    5885 
    5886 > view matrix models
    5887 > #15,0.73144,0.29806,-0.61332,121.58,-0.31797,0.94473,0.079904,61.701,0.60324,0.13658,0.78578,-103.18
    5888 
    5889 > view matrix models
    5890 > #15,0.73144,0.29806,-0.61332,121.13,-0.31797,0.94473,0.079904,61.434,0.60324,0.13658,0.78578,-102.88
    5891 
    5892 > view matrix models
    5893 > #15,0.73144,0.29806,-0.61332,119.37,-0.31797,0.94473,0.079904,60.222,0.60324,0.13658,0.78578,-101.65
    5894 
    5895 > view matrix models
    5896 > #15,0.73144,0.29806,-0.61332,118.64,-0.31797,0.94473,0.079904,59.913,0.60324,0.13658,0.78578,-101.58
    5897 
    5898 > view matrix models
    5899 > #15,0.73144,0.29806,-0.61332,118.04,-0.31797,0.94473,0.079904,60.398,0.60324,0.13658,0.78578,-101.5
    5900 
    5901 > view matrix models
    5902 > #15,0.73144,0.29806,-0.61332,118.64,-0.31797,0.94473,0.079904,60.304,0.60324,0.13658,0.78578,-101.54
    5903 
    5904 > ui mousemode right "rotate selected models"
    5905 
    5906 > view matrix models
    5907 > #15,0.727,0.29816,-0.61852,120.49,-0.31395,0.94547,0.08676,58.029,0.61066,0.13111,0.78097,-100.88
    5908 
    5909 > view matrix models
    5910 > #15,0.7445,0.31142,-0.59055,108.89,-0.34029,0.93803,0.065663,68.768,0.5744,0.15207,0.80433,-102.88
    5911 
    5912 > view matrix models
    5913 > #15,0.92214,0.37875,-0.078793,-39.914,-0.36609,0.92018,0.13876,62.994,0.12506,-0.099113,0.98719,-0.92484
    5914 
    5915 > view matrix models
    5916 > #15,0.92322,0.38112,-0.049193,-46.445,-0.3729,0.91942,0.12494,67.178,0.092847,-0.097003,0.99094,4.0633
    5917 
    5918 > ui mousemode right "translate selected models"
    5919 
    5920 > view matrix models
    5921 > #15,0.92322,0.38112,-0.049193,-48.792,-0.3729,0.91942,0.12494,69.153,0.092847,-0.097003,0.99094,4.2959
    5922 
    5923 > view matrix models
    5924 > #15,0.92322,0.38112,-0.049193,-47.631,-0.3729,0.91942,0.12494,68.575,0.092847,-0.097003,0.99094,3.1727
    5925 
    5926 > view matrix models
    5927 > #15,0.92322,0.38112,-0.049193,-49.836,-0.3729,0.91942,0.12494,68.413,0.092847,-0.097003,0.99094,2.6535
    5928 
    5929 > view matrix models
    5930 > #15,0.92322,0.38112,-0.049193,-50.951,-0.3729,0.91942,0.12494,68.065,0.092847,-0.097003,0.99094,2.3746
    5931 
    5932 > ui mousemode right "rotate selected models"
    5933 
    5934 > view matrix models
    5935 > #15,0.94572,0.32393,-0.026027,-47.986,-0.32412,0.94601,-0.0031921,78.478,0.023587,0.011454,0.99966,-8.5377
    5936 
    5937 > view matrix models
    5938 > #15,0.94676,0.31281,-0.076102,-36.013,-0.31255,0.94977,0.015547,71.792,0.077143,0.009067,0.99698,-17.766
    5939 
    5940 > show #!22 models
    5941 
    5942 > hide #!23 models
    5943 
    5944 > show #!23 models
    5945 
    5946 > hide #!22 models
    5947 
    5948 > ui mousemode right "translate selected models"
    5949 
    5950 > view matrix models
    5951 > #15,0.94676,0.31281,-0.076102,-33.609,-0.31255,0.94977,0.015547,71.943,0.077143,0.009067,0.99698,-18.368
    5952 
    5953 > view matrix models
    5954 > #15,0.94676,0.31281,-0.076102,-32.871,-0.31255,0.94977,0.015547,72.728,0.077143,0.009067,0.99698,-17.727
    5955 
    5956 > view matrix models
    5957 > #15,0.94676,0.31281,-0.076102,-32.895,-0.31255,0.94977,0.015547,72.134,0.077143,0.009067,0.99698,-17.858
    5958 
    5959 > ui mousemode right "rotate selected models"
    5960 
    5961 > view matrix models
    5962 > #15,0.92692,0.36812,-0.072876,-41.183,-0.36645,0.92976,0.035649,82.631,0.08088,-0.0063386,0.9967,-15.33
    5963 
    5964 > ui mousemode right "translate selected models"
    5965 
    5966 > view matrix models
    5967 > #15,0.92692,0.36812,-0.072876,-40.603,-0.36645,0.92976,0.035649,82.3,0.08088,-0.0063386,0.9967,-15.495
    5968 
    5969 > view matrix models
    5970 > #15,0.92692,0.36812,-0.072876,-39.672,-0.36645,0.92976,0.035649,82.834,0.08088,-0.0063386,0.9967,-14.886
    5971 
    5972 > view matrix models
    5973 > #15,0.92692,0.36812,-0.072876,-39.896,-0.36645,0.92976,0.035649,82.754,0.08088,-0.0063386,0.9967,-15.225
    5974 
    5975 > ui mousemode right "rotate selected models"
    5976 
    5977 > view matrix models
    5978 > #15,0.91041,0.29782,-0.28714,20.044,-0.28752,0.95456,0.078463,54.075,0.29746,0.011122,0.95467,-52.007
    5979 
    5980 > view matrix models
    5981 > #15,0.87246,0.36951,-0.3198,18.907,-0.36664,0.92761,0.071549,76.16,0.32309,0.054829,0.94478,-64.011
    5982 
    5983 > ui mousemode right "translate selected models"
    5984 
    5985 > view matrix models
    5986 > #15,0.87246,0.36951,-0.3198,18.728,-0.36664,0.92761,0.071549,75.779,0.32309,0.054829,0.94478,-65.425
    5987 
    5988 > ui mousemode right "translate selected models"
    5989 
    5990 > view matrix models
    5991 > #15,0.87246,0.36951,-0.3198,19.482,-0.36664,0.92761,0.071549,75.725,0.32309,0.054829,0.94478,-64.103
    5992 
    5993 > view matrix models
    5994 > #15,0.87246,0.36951,-0.3198,21.13,-0.36664,0.92761,0.071549,75.843,0.32309,0.054829,0.94478,-63.842
    5995 
    5996 > view matrix models
    5997 > #15,0.87246,0.36951,-0.3198,21.154,-0.36664,0.92761,0.071549,75.867,0.32309,0.054829,0.94478,-63.845
    5998 
    5999 > view matrix models
    6000 > #15,0.87246,0.36951,-0.3198,21.384,-0.36664,0.92761,0.071549,75.962,0.32309,0.054829,0.94478,-64.354
    6001 
    6002 > view matrix models
    6003 > #15,0.87246,0.36951,-0.3198,21.636,-0.36664,0.92761,0.071549,76.019,0.32309,0.054829,0.94478,-64.243
    6004 
    6005 > ui mousemode right "rotate selected models"
    6006 
    6007 > view matrix models
    6008 > #15,0.83575,0.44847,-0.31685,11.734,-0.44617,0.89097,0.084228,96.327,0.32008,0.070976,0.94473,-66.999
    6009 
    6010 > ui mousemode right "translate selected models"
    6011 
    6012 > view matrix models
    6013 > #15,0.83575,0.44847,-0.31685,13.657,-0.44617,0.89097,0.084228,95.464,0.32008,0.070976,0.94473,-66.607
    6014 
    6015 > view matrix models
    6016 > #15,0.83575,0.44847,-0.31685,14.224,-0.44617,0.89097,0.084228,95.701,0.32008,0.070976,0.94473,-66.508
    6017 
    6018 > view matrix models
    6019 > #15,0.83575,0.44847,-0.31685,15.166,-0.44617,0.89097,0.084228,95.326,0.32008,0.070976,0.94473,-66.317
    6020 
    6021 > ui mousemode right "translate selected models"
    6022 
    6023 > view matrix models
    6024 > #15,0.83575,0.44847,-0.31685,13.341,-0.44617,0.89097,0.084228,93.254,0.32008,0.070976,0.94473,-64.581
    6025 
    6026 > ui mousemode right "rotate selected models"
    6027 
    6028 > view matrix models
    6029 > #15,0.75824,0.49292,-0.42674,40.635,-0.48563,0.86371,0.13478,96.486,0.43502,0.10504,0.89427,-83.688
    6030 
    6031 > view matrix models
    6032 > #15,0.74535,0.5077,-0.43208,41.094,-0.53226,0.84344,0.072884,121.81,0.40144,0.17566,0.89889,-92.786
    6033 
    6034 > ui mousemode right "translate selected models"
    6035 
    6036 > view matrix models
    6037 > #15,0.74535,0.5077,-0.43208,41.859,-0.53226,0.84344,0.072884,121.98,0.40144,0.17566,0.89889,-92.691
    6038 
    6039 > ui mousemode right "rotate selected models"
    6040 
    6041 > view matrix models
    6042 > #15,0.80743,0.49528,-0.32056,10.57,-0.52328,0.85216,-0.0014085,133.1,0.27247,0.16888,0.94723,-76.133
    6043 
    6044 > view matrix models
    6045 > #15,0.83024,0.50674,-0.2322,-13.585,-0.52181,0.85305,-0.0041415,133.18,0.19598,0.1246,0.97266,-57.339
    6046 
    6047 > ui mousemode right "translate selected models"
    6048 
    6049 > view matrix models
    6050 > #15,0.83024,0.50674,-0.2322,-13.752,-0.52181,0.85305,-0.0041415,130.68,0.19598,0.1246,0.97266,-57.427
    6051 
    6052 > ui mousemode right "rotate selected models"
    6053 
    6054 > view matrix models
    6055 > #15,0.85177,0.52002,-0.063764,-53.819,-0.52372,0.84842,-0.076742,146.31,0.014191,0.098762,0.99501,-21.689
    6056 
    6057 > ui mousemode right "translate selected models"
    6058 
    6059 > view matrix models
    6060 > #15,0.85177,0.52002,-0.063764,-54.107,-0.52372,0.84842,-0.076742,148.13,0.014191,0.098762,0.99501,-21.774
    6061 
    6062 > ui mousemode right "rotate selected models"
    6063 
    6064 > hide #!23 models
    6065 
    6066 > select clear
    6067 
    6068 > combine #13,14,15,17,18
    6069 
    6070 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    6071 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    6072 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    6073 
    6074 > combine #24
    6075 
    6076 > color #25 #73fcd6ff
    6077 
    6078 > select add #25
    6079 
    6080 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    6081 
    6082 > ui mousemode right zoom
    6083 
    6084 > ui mousemode right "translate selected models"
    6085 
    6086 > view matrix models
    6087 > #25,0.93679,0.34915,0.022882,-76.849,-0.34379,0.93062,-0.12551,32.6,-0.065117,0.10971,0.99183,-11.564
    6088 
    6089 > ui mousemode right "rotate selected models"
    6090 
    6091 > view matrix models
    6092 > #25,0.85855,0.51254,-0.013726,-91.518,-0.50736,0.84539,-0.16705,92.322,-0.074017,0.15039,0.98585,-17.91
    6093 
    6094 > view matrix models
    6095 > #25,0.91424,0.4032,-0.039856,-71.93,-0.40257,0.89283,-0.20199,68.366,-0.04586,0.20071,0.97858,-33.374
    6096 
    6097 > view matrix models
    6098 > #25,0.86182,0.27294,-0.42751,47.783,-0.42784,0.8439,-0.3237,109.49,0.27243,0.46188,0.84407,-127.07
    6099 
    6100 > view matrix models
    6101 > #25,0.87993,0.078272,-0.46861,97.24,-0.3567,0.76036,-0.54278,159.9,0.31383,0.64476,0.69699,-146.63
    6102 
    6103 > view matrix models
    6104 > #25,0.93607,0.26732,-0.22874,-6.2182,-0.34229,0.84228,-0.41642,112.37,0.081349,0.46809,0.87993,-98.85
    6105 
    6106 > view matrix models
    6107 > #25,0.89383,0.2711,-0.35718,27.531,-0.3975,0.84767,-0.35134,108.44,0.20753,0.45602,0.86543,-117.55
    6108 
    6109 > ui mousemode right zoom
    6110 
    6111 > ui mousemode right "translate selected models"
    6112 
    6113 > view matrix models
    6114 > #25,0.89383,0.2711,-0.35718,32.428,-0.3975,0.84767,-0.35134,109.63,0.20753,0.45602,0.86543,-123.27
    6115 
    6116 > view matrix models
    6117 > #25,0.89383,0.2711,-0.35718,33.009,-0.3975,0.84767,-0.35134,108.09,0.20753,0.45602,0.86543,-123.17
    6118 
    6119 > ui mousemode right "rotate selected models"
    6120 
    6121 > view matrix models
    6122 > #25,0.87233,0.35066,-0.34069,15.588,-0.44227,0.86301,-0.24416,91.202,0.2084,0.36367,0.90792,-110.96
    6123 
    6124 > ui mousemode right "translate selected models"
    6125 
    6126 > view matrix models
    6127 > #25,0.87233,0.35066,-0.34069,16.223,-0.44227,0.86301,-0.24416,92.543,0.2084,0.36367,0.90792,-110
    6128 
    6129 > ui mousemode right "rotate selected models"
    6130 
    6131 > view matrix models
    6132 > #25,0.82932,0.4503,-0.33085,-0.25157,-0.5409,0.79551,-0.27312,133.04,0.14021,0.40546,0.90329,-105.4
    6133 
    6134 > ui mousemode right "translate selected models"
    6135 
    6136 > view matrix models
    6137 > #25,0.82932,0.4503,-0.33085,-2.2197,-0.5409,0.79551,-0.27312,135.75,0.14021,0.40546,0.90329,-105.69
    6138 
    6139 > view matrix models
    6140 > #25,0.82932,0.4503,-0.33085,-1.2505,-0.5409,0.79551,-0.27312,136.36,0.14021,0.40546,0.90329,-104.53
    6141 
    6142 > ui mousemode right "rotate selected models"
    6143 
    6144 > view matrix models
    6145 > #25,0.89526,0.12322,-0.42816,80.783,-0.38815,0.6875,-0.61375,201.55,0.21874,0.71565,0.66332,-141.28
    6146 
    6147 > view matrix models
    6148 > #25,0.91407,0.068259,-0.39977,83.862,-0.31534,0.73946,-0.59477,171.66,0.25501,0.66973,0.69745,-144.83
    6149 
    6150 > ui mousemode right "translate selected models"
    6151 
    6152 > view matrix models
    6153 > #25,0.91407,0.068259,-0.39977,81.673,-0.31534,0.73946,-0.59477,168.73,0.25501,0.66973,0.69745,-147.8
    6154 
    6155 > view matrix models
    6156 > #25,0.91407,0.068259,-0.39977,90.339,-0.31534,0.73946,-0.59477,192.04,0.25501,0.66973,0.69745,-145.36
    6157 
    6158 > view matrix models
    6159 > #25,0.91407,0.068259,-0.39977,90.55,-0.31534,0.73946,-0.59477,192.21,0.25501,0.66973,0.69745,-145.46
    6160 
    6161 > fitmap sel inMap #8
    6162 
    6163 Fit molecule copy of combination (#25) to map postprocess_masked330_onepf.mrc
    6164 (#8) using 2584 atoms 
    6165 average map value = 0.01103, steps = 352 
    6166 shifted from previous position = 6.05 
    6167 rotated from previous position = 46.5 degrees 
    6168 atoms outside contour = 1607, contour level = 0.012786 
    6169  
    6170 Position of copy of combination (#25) relative to
    6171 postprocess_masked330_onepf.mrc (#8) coordinates: 
    6172 Matrix rotation and translation 
    6173 0.92106112 0.38935043 0.00725557 -70.20348161 
    6174 -0.38925581 0.92105535 -0.01170278 40.80160565 
    6175 -0.01123926 0.00795470 0.99990520 -0.83552664 
    6176 Axis 0.02523186 0.02373951 -0.99939971 
    6177 Axis point 65.55329993 193.60194072 0.00000000 
    6178 Rotation angle (degrees) 22.92569035 
    6179 Shift along axis 0.03227088 
    6180  
    6181 
    6182 > hide #!8 models
    6183 
    6184 > show #!9 models
    6185 
    6186 > hide #!24 models
    6187 
    6188 > hide #!25 models
    6189 
    6190 > hide #!18 models
    6191 
    6192 > hide #!17 models
    6193 
    6194 > hide #!13 models
    6195 
    6196 > hide #!14 models
    6197 
    6198 > hide #!15 models
    6199 
    6200 > show #!24 models
    6201 
    6202 > hide #!24 models
    6203 
    6204 > show #!8 models
    6205 
    6206 > hide #!8 models
    6207 
    6208 > hide #!9 models
    6209 
    6210 > show #!8 models
    6211 
    6212 > show #!24 models
    6213 
    6214 > hide #!24 models
    6215 
    6216 > show #!24 models
    6217 
    6218 > show #!25 models
    6219 
    6220 > view matrix models
    6221 > #25,0.92106,0.38933,0.0080971,-65.879,-0.38922,0.92107,-0.011767,87.789,-0.012039,0.0076869,0.9999,4.8159
    6222 
    6223 > view matrix models
    6224 > #25,0.92106,0.38933,0.0080971,-64.868,-0.38922,0.92107,-0.011767,87.585,-0.012039,0.0076869,0.9999,-0.073185
    6225 
    6226 > view matrix models
    6227 > #25,0.92106,0.38933,0.0080971,-67.556,-0.38922,0.92107,-0.011767,89.995,-0.012039,0.0076869,0.9999,-0.76675
    6228 
    6229 > view matrix models
    6230 > #25,0.92106,0.38933,0.0080971,-67.266,-0.38922,0.92107,-0.011767,90.4,-0.012039,0.0076869,0.9999,-0.98862
    6231 
    6232 > ui mousemode right "rotate selected models"
    6233 
    6234 > view matrix models
    6235 > #25,0.90674,0.42109,-0.022408,-65.476,-0.42158,0.90642,-0.026066,102.96,0.0093346,0.033082,0.99941,-10.835
    6236 
    6237 > view matrix models
    6238 > #25,0.97429,0.16465,-0.15381,7.1109,-0.20613,0.927,-0.31333,115.63,0.090991,0.33698,0.9371,-83.315
    6239 
    6240 > view matrix models
    6241 > #25,0.95358,0.25215,-0.16462,-6.6583,-0.29271,0.90455,-0.31003,136.86,0.070735,0.34383,0.93636,-80.804
    6242 
    6243 > view matrix models
    6244 > #25,0.95105,0.25342,-0.17686,-3.9386,-0.29739,0.90612,-0.30083,135.51,0.084025,0.3387,0.93713,-82.365
    6245 
    6246 > view matrix models
    6247 > #25,0.92424,0.32559,-0.19945,-10.597,-0.37622,0.86569,-0.3302,166.07,0.065154,0.38022,0.9226,-85.211
    6248 
    6249 > hide #!24 models
    6250 
    6251 > show #!24 models
    6252 
    6253 > show #!17 models
    6254 
    6255 > select add #17
    6256 
    6257 2841 atoms, 2841 bonds, 3 pseudobonds, 181 residues, 3 models selected 
    6258 
    6259 > select subtract #17
    6260 
    6261 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    6262 
    6263 > hide #!17 models
    6264 
    6265 > show #!15 models
    6266 
    6267 > select add #15
    6268 
    6269 3034 atoms, 3031 bonds, 3 pseudobonds, 196 residues, 3 models selected 
    6270 
    6271 > view matrix models
    6272 > #15,0.83831,0.54205,-0.058464,-57.559,-0.54515,0.83475,-0.077483,155.17,0.0068032,0.096826,0.99528,-20.06,#25,0.91486,0.35016,-0.20105,-14.07,-0.39965,0.85626,-0.32725,172.16,0.05756,0.37974,0.9233,-83.774
    6273 
    6274 > undo
    6275 
    6276 > select subtract #25
    6277 
    6278 450 atoms, 449 bonds, 30 residues, 1 model selected 
    6279 
    6280 > view matrix models
    6281 > #15,0.87856,0.47168,-0.075163,-46.98,-0.47667,0.87582,-0.075611,133.23,0.030165,0.10226,0.9943,-25.415
    6282 
    6283 > view matrix models
    6284 > #15,0.92314,0.37181,-0.097787,-30.381,-0.37939,0.92218,-0.075212,104.94,0.062212,0.10653,0.99236,-32.051
    6285 
    6286 > view matrix models
    6287 > #15,0.92391,0.34978,-0.15509,-14.672,-0.35458,0.93502,-0.0035936,83.415,0.14375,0.058312,0.98789,-36.796
    6288 
    6289 > ui mousemode right "translate selected models"
    6290 
    6291 > view matrix models
    6292 > #15,0.92391,0.34978,-0.15509,-14.969,-0.35458,0.93502,-0.0035936,83.805,0.14375,0.058312,0.98789,-36.757
    6293 
    6294 > hide #!24 models
    6295 
    6296 > ui mousemode right "rotate selected models"
    6297 
    6298 > view matrix models
    6299 > #15,0.93681,0.33579,-0.098118,-25.773,-0.34534,0.93246,-0.10606,102.76,0.055878,0.13324,0.98951,-35.766
    6300 
    6301 > ui mousemode right "translate selected models"
    6302 
    6303 > view matrix models
    6304 > #15,0.93681,0.33579,-0.098118,-26.486,-0.34534,0.93246,-0.10606,103.49,0.055878,0.13324,0.98951,-34.283
    6305 
    6306 > view matrix models
    6307 > #15,0.93681,0.33579,-0.098118,-26.367,-0.34534,0.93246,-0.10606,103.51,0.055878,0.13324,0.98951,-34.238
    6308 
    6309 > view matrix models
    6310 > #15,0.93681,0.33579,-0.098118,-26.295,-0.34534,0.93246,-0.10606,103.4,0.055878,0.13324,0.98951,-33.517
    6311 
    6312 > ui mousemode right "rotate selected models"
    6313 
    6314 > view matrix models
    6315 > #15,0.92968,0.32942,-0.16486,-10.456,-0.36004,0.90722,-0.21755,133.41,0.077896,0.26161,0.96203,-58.888
    6316 
    6317 > view matrix models
    6318 > #15,0.93264,0.31281,-0.17982,-4.6355,-0.34456,0.92004,-0.18656,121.69,0.10708,0.23595,0.96585,-59.916
    6319 
    6320 > ui mousemode right "translate selected models"
    6321 
    6322 > view matrix models
    6323 > #15,0.93264,0.31281,-0.17982,-4.836,-0.34456,0.92004,-0.18656,121.92,0.10708,0.23595,0.96585,-59.425
    6324 
    6325 > ui mousemode right "rotate selected models"
    6326 
    6327 > ui mousemode right "translate selected models"
    6328 
    6329 > view matrix models
    6330 > #15,0.93264,0.31281,-0.17982,-4.6402,-0.34456,0.92004,-0.18656,123.56,0.10708,0.23595,0.96585,-61.496
    6331 
    6332 > view matrix models
    6333 > #15,0.93264,0.31281,-0.17982,-4.387,-0.34456,0.92004,-0.18656,124.13,0.10708,0.23595,0.96585,-60.318
    6334 
    6335 > ui mousemode right "rotate selected models"
    6336 
    6337 > view matrix models
    6338 > #15,0.9368,0.29303,-0.19114,1.141,-0.33364,0.91268,-0.23603,133.31,0.10528,0.28488,0.95276,-67.524
    6339 
    6340 > select add #25
    6341 
    6342 3034 atoms, 3031 bonds, 3 pseudobonds, 196 residues, 3 models selected 
    6343 
    6344 > close #25
    6345 
    6346 > combine #13,14,15,17,18
    6347 
    6348 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    6349 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    6350 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    6351 
    6352 > combine #13,14,15,17,18
    6353 
    6354 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    6355 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    6356 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    6357 
    6358 > color #26 #0096ffff
    6359 
    6360 > hide #!15 models
    6361 
    6362 > select add #26
    6363 
    6364 3034 atoms, 3031 bonds, 3 pseudobonds, 196 residues, 3 models selected 
    6365 
    6366 > ui mousemode right "rotate selected models"
    6367 
    6368 > select subtract #15
    6369 
    6370 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    6371 
    6372 > view matrix models
    6373 > #26,0.93954,0.34227,0.0104,-61.316,-0.33217,0.91836,-0.21512,96.654,-0.08318,0.19866,0.97653,-25.086
    6374 
    6375 > undo
    6376 
    6377 > ui mousemode right "translate selected models"
    6378 
    6379 > view matrix models
    6380 > #26,0.93679,0.34915,0.022882,-64.152,-0.34379,0.93062,-0.12551,101.07,-0.065117,0.10971,0.99183,-8.9586
    6381 
    6382 > view matrix models
    6383 > #26,0.93679,0.34915,0.022882,-62.441,-0.34379,0.93062,-0.12551,100.52,-0.065117,0.10971,0.99183,-9.5512
    6384 
    6385 > view matrix models
    6386 > #26,0.93679,0.34915,0.022882,-62.722,-0.34379,0.93062,-0.12551,100.63,-0.065117,0.10971,0.99183,-9.6938
    6387 
    6388 > view matrix models
    6389 > #26,0.93679,0.34915,0.022882,-64.157,-0.34379,0.93062,-0.12551,100.73,-0.065117,0.10971,0.99183,-9.7287
    6390 
    6391 > hide #!26 models
    6392 
    6393 > hide #!8 models
    6394 
    6395 > hide #!25 models
    6396 
    6397 > show #!15 models
    6398 
    6399 > show #!14 models
    6400 
    6401 > show #!13 models
    6402 
    6403 > show #!18 models
    6404 
    6405 > show #!17 models
    6406 
    6407 > select add #18
    6408 
    6409 3914 atoms, 3911 bonds, 4 pseudobonds, 250 residues, 4 models selected 
    6410 
    6411 > select subtract #18
    6412 
    6413 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    6414 
    6415 > select add #17
    6416 
    6417 2841 atoms, 2841 bonds, 3 pseudobonds, 181 residues, 3 models selected 
    6418 
    6419 > select subtract #17
    6420 
    6421 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    6422 
    6423 > select add #15
    6424 
    6425 3034 atoms, 3031 bonds, 3 pseudobonds, 196 residues, 3 models selected 
    6426 
    6427 > ui mousemode right "rotate selected models"
    6428 
    6429 > view matrix models
    6430 > #15,0.93076,0.30939,-0.19483,-0.36148,-0.34958,0.90916,-0.22633,135.18,0.10711,0.27877,0.95437,-66.923,#26,0.93048,0.36573,0.021143,-66.201,-0.36085,0.92495,-0.11939,104.14,-0.063221,0.10346,0.99262,-8.89
    6431 
    6432 > view matrix models
    6433 > #15,0.91216,0.36507,-0.18624,-10.021,-0.3754,0.92659,-0.022282,96.295,0.16443,0.090239,0.98225,-44.365,#26,0.90755,0.41838,0.036087,-76.196,-0.41993,0.90426,0.077297,81.187,-0.00029226,-0.085306,0.99635,19.342
    6434 
    6435 > ui mousemode right "translate selected models"
    6436 
    6437 > view matrix models
    6438 > #15,0.91216,0.36507,-0.18624,-9.6712,-0.3754,0.92659,-0.022282,95.448,0.16443,0.090239,0.98225,-47.845,#26,0.90755,0.41838,0.036087,-75.846,-0.41993,0.90426,0.077297,80.34,-0.00029226,-0.085306,0.99635,15.862
    6439 
    6440 > view matrix models
    6441 > #15,0.91216,0.36507,-0.18624,-10.908,-0.3754,0.92659,-0.022282,93.427,0.16443,0.090239,0.98225,-48.87,#26,0.90755,0.41838,0.036087,-77.083,-0.41993,0.90426,0.077297,78.319,-0.00029226,-0.085306,0.99635,14.837
    6442 
    6443 > view matrix models
    6444 > #15,0.91216,0.36507,-0.18624,-10.09,-0.3754,0.92659,-0.022282,93.363,0.16443,0.090239,0.98225,-48.956,#26,0.90755,0.41838,0.036087,-76.265,-0.41993,0.90426,0.077297,78.255,-0.00029226,-0.085306,0.99635,14.751
    6445 
    6446 > view matrix models
    6447 > #15,0.91216,0.36507,-0.18624,-9.2778,-0.3754,0.92659,-0.022282,93.215,0.16443,0.090239,0.98225,-49.001,#26,0.90755,0.41838,0.036087,-75.453,-0.41993,0.90426,0.077297,78.107,-0.00029226,-0.085306,0.99635,14.706
    6448 
    6449 > ui mousemode right "rotate selected models"
    6450 
    6451 > view matrix models
    6452 > #15,0.87626,0.44677,-0.18044,-20.462,-0.45461,0.89069,-0.0023263,111.88,0.15968,0.084069,0.98358,-47.076,#26,0.86653,0.49662,0.049964,-87.261,-0.49911,0.8631,0.0771,102.93,-0.0048347,-0.091746,0.99577,17.141
    6453 
    6454 > show #!26 models
    6455 
    6456 > hide #!26 models
    6457 
    6458 > show #!25 models
    6459 
    6460 > hide #!25 models
    6461 
    6462 > show #!24 models
    6463 
    6464 > hide #!24 models
    6465 
    6466 > show #!23 models
    6467 
    6468 > ui mousemode right "translate selected models"
    6469 
    6470 > view matrix models
    6471 > #15,0.87626,0.44677,-0.18044,-21.476,-0.45461,0.89069,-0.0023263,112.2,0.15968,0.084069,0.98358,-46.835,#26,0.86653,0.49662,0.049964,-88.276,-0.49911,0.8631,0.0771,103.26,-0.0048347,-0.091746,0.99577,17.382
    6472 
    6473 > hide #!23 models
    6474 
    6475 > show #!12 models
    6476 
    6477 > hide #!12 models
    6478 
    6479 > show #!8 models
    6480 
    6481 > show #!26 models
    6482 
    6483 > hide #!26 models
    6484 
    6485 > show #!26 models
    6486 
    6487 > hide #!26 models
    6488 
    6489 > volume #8 level 0.009899
    6490 
    6491 > select subtract #26
    6492 
    6493 450 atoms, 449 bonds, 30 residues, 1 model selected 
    6494 
    6495 > hide #!18 models
    6496 
    6497 > hide #!17 models
    6498 
    6499 > hide #!15 models
    6500 
    6501 > hide #!14 models
    6502 
    6503 > hide #!13 models
    6504 
    6505 > show #!15 models
    6506 
    6507 > hide #!15 models
    6508 
    6509 > select subtract #15
    6510 
    6511 Nothing selected 
    6512 
    6513 > show #!9 models
    6514 
    6515 > hide #!8 models
    6516 
    6517 > show #!18 models
    6518 
    6519 > show #!17 models
    6520 
    6521 > show #!15 models
    6522 
    6523 > show #!13 models
    6524 
    6525 > show #!14 models
    6526 
    6527 > hide #!9 models
    6528 
    6529 > select add #17
    6530 
    6531 257 atoms, 259 bonds, 15 residues, 1 model selected 
    6532 
    6533 > select subtract #17
    6534 
    6535 Nothing selected 
    6536 
    6537 > select add #18
    6538 
    6539 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    6540 
    6541 > select subtract #18
    6542 
    6543 Nothing selected 
    6544 
    6545 > select add #15
    6546 
    6547 450 atoms, 449 bonds, 30 residues, 1 model selected 
    6548 
    6549 > ui mousemode right "rotate selected models"
    6550 
    6551 > view matrix models
    6552 > #15,0.87264,0.46232,-0.15737,-28.549,-0.45282,0.88665,0.093809,93.751,0.1829,-0.010603,0.98307,-31.581
    6553 
    6554 > ui mousemode right "translate selected models"
    6555 
    6556 > view matrix models
    6557 > #15,0.87264,0.46232,-0.15737,-28.868,-0.45282,0.88665,0.093809,91.621,0.1829,-0.010603,0.98307,-32.672
    6558 
    6559 > view matrix models
    6560 > #15,0.87264,0.46232,-0.15737,-28.941,-0.45282,0.88665,0.093809,91.794,0.1829,-0.010603,0.98307,-32.227
    6561 
    6562 > show #!23 models
    6563 
    6564 > show #!26 models
    6565 
    6566 > hide #!26 models
    6567 
    6568 > hide #!23 models
    6569 
    6570 > select clear
    6571 
    6572 > combine #13,14,15,17,18
    6573 
    6574 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    6575 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    6576 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    6577 
    6578 > combine #13,14,15,17,18
    6579 
    6580 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    6581 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    6582 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    6583 
    6584 > color #28 #76d6ffff
    6585 
    6586 > select add #28
    6587 
    6588 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    6589 
    6590 > color #8 #00fa92ff models
    6591 
    6592 > show #!8 models
    6593 
    6594 > select clear
    6595 
    6596 > ui mousemode right select
    6597 
    6598 > select #8
    6599 
    6600 2 models selected 
    6601 
    6602 > transparency #8.1 60
    6603 
    6604 > select clear
    6605 
    6606 [Repeated 1 time(s)]
    6607 
    6608 > select #8
    6609 
    6610 2 models selected 
    6611 
    6612 > transparency #8.1 70
    6613 
    6614 > select clear
    6615 
    6616 > select add #28
    6617 
    6618 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    6619 
    6620 > ui mousemode right "translate selected models"
    6621 
    6622 > view matrix models
    6623 > #28,0.93679,0.34915,0.022882,-62.226,-0.34379,0.93062,-0.12551,103,-0.065117,0.10971,0.99183,-12.766
    6624 
    6625 > view matrix models
    6626 > #28,0.93679,0.34915,0.022882,-62.363,-0.34379,0.93062,-0.12551,104.22,-0.065117,0.10971,0.99183,-10.656
    6627 
    6628 > view matrix models
    6629 > #28,0.93679,0.34915,0.022882,-64.684,-0.34379,0.93062,-0.12551,100.68,-0.065117,0.10971,0.99183,-10.867
    6630 
    6631 > fitmap sel inMap #8
    6632 
    6633 Fit molecule combination (#28) to map postprocess_masked330_onepf.mrc (#8)
    6634 using 2584 atoms 
    6635 average map value = 0.01221, steps = 88 
    6636 shifted from previous position = 0.746 
    6637 rotated from previous position = 4.21 degrees 
    6638 atoms outside contour = 1367, contour level = 0.0098989 
    6639  
    6640 Position of combination (#28) relative to postprocess_masked330_onepf.mrc (#8)
    6641 coordinates: 
    6642 Matrix rotation and translation 
    6643 0.93369851 0.35276918 0.06132698 -71.97796238 
    6644 -0.34903052 0.93492501 -0.06397592 87.95628099 
    6645 -0.07990486 0.03832924 0.99606530 7.80270428 
    6646 Axis 0.14147296 0.19530282 -0.97048555 
    6647 Axis point 207.07011821 242.72346329 0.00000000 
    6648 Rotation angle (degrees) 21.19673416 
    6649 Shift along axis -0.57723728 
    6650  
    6651 
    6652 > select clear
    6653 
    6654 > ui windowfill toggle
    6655 
    6656 [Repeated 1 time(s)]
    6657 
    6658 > hide #!28 models
    6659 
    6660 > hide #!27 models
    6661 
    6662 > select add #13
    6663 
    6664 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    6665 
    6666 > select add #14
    6667 
    6668 547 atoms, 545 bonds, 2 pseudobonds, 37 residues, 4 models selected 
    6669 
    6670 > select subtract #13
    6671 
    6672 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    6673 
    6674 > ui mousemode right "rotate selected models"
    6675 
    6676 > view matrix models
    6677 > #14,0.98009,0.16656,-0.10803,-10.826,-0.11763,0.92555,0.35988,-57.56,0.15993,-0.34001,0.92672,57.839
    6678 
    6679 > ui mousemode right "translate selected models"
    6680 
    6681 > view matrix models
    6682 > #14,0.98009,0.16656,-0.10803,-6.8369,-0.11763,0.92555,0.35988,-59.985,0.15993,-0.34001,0.92672,56.164
    6683 
    6684 > ui mousemode right "rotate selected models"
    6685 
    6686 > view matrix models
    6687 > #14,0.98484,0.038714,-0.1691,31.432,0.012301,0.95674,0.29068,-78.76,0.17304,-0.28835,0.94176,39.618
    6688 
    6689 > ui mousemode right "translate selected models"
    6690 
    6691 > view matrix models
    6692 > #14,0.98484,0.038714,-0.1691,33.223,0.012301,0.95674,0.29068,-79.589,0.17304,-0.28835,0.94176,38.85
    6693 
    6694 > ui mousemode right "rotate selected models"
    6695 
    6696 > view matrix models
    6697 > #14,0.88943,0.16718,-0.4254,73.182,-0.043261,0.95732,0.28578,-67.956,0.45502,-0.23578,0.8587,-11.486
    6698 
    6699 > view matrix models
    6700 > #14,0.89,0.22071,-0.39899,56.503,-0.10802,0.95219,0.28576,-54.238,0.44298,-0.21122,0.87129,-16.834
    6701 
    6702 > hide #!8 models
    6703 
    6704 > ui mousemode right "rotate selected models"
    6705 
    6706 > view matrix models
    6707 > #14,0.90484,0.21443,-0.36781,48.999,-0.036949,0.9002,0.43391,-85.229,0.42414,-0.37903,0.82246,32.284
    6708 
    6709 > ui mousemode right "translate selected models"
    6710 
    6711 > view matrix models
    6712 > #14,0.90484,0.21443,-0.36781,49.126,-0.036949,0.9002,0.43391,-84.876,0.42414,-0.37903,0.82246,34.244
    6713 
    6714 > ui mousemode right "rotate selected models"
    6715 
    6716 > view matrix models
    6717 > #14,0.90717,0.18128,-0.37971,58.083,0.058233,0.83966,0.53999,-110.67,0.41672,-0.51197,0.75115,77.937
    6718 
    6719 > ui mousemode right "translate selected models"
    6720 
    6721 > view matrix models
    6722 > #14,0.90717,0.18128,-0.37971,58.831,0.058233,0.83966,0.53999,-109.87,0.41672,-0.51197,0.75115,79.964
    6723 
    6724 > show #!8 models
    6725 
    6726 > view matrix models
    6727 > #14,0.90717,0.18128,-0.37971,59.109,0.058233,0.83966,0.53999,-111.47,0.41672,-0.51197,0.75115,80.291
    6728 
    6729 > ui mousemode right "rotate selected models"
    6730 
    6731 > view matrix models
    6732 > #14,0.93444,0.19819,-0.29588,34.125,-0.096387,0.94058,0.32562,-62.075,0.34283,-0.27575,0.89801,15.757
    6733 
    6734 > ui mousemode right "translate selected models"
    6735 
    6736 > view matrix models
    6737 > #14,0.93444,0.19819,-0.29588,33.416,-0.096387,0.94058,0.32562,-62.214,0.34283,-0.27575,0.89801,11.72
    6738 
    6739 > view matrix models
    6740 > #14,0.93444,0.19819,-0.29588,33.428,-0.096387,0.94058,0.32562,-62.14,0.34283,-0.27575,0.89801,11.728
    6741 
    6742 > ui mousemode right "rotate selected models"
    6743 
    6744 > view matrix models
    6745 > #14,0.94277,0.18985,-0.27412,29.437,-0.096174,0.94197,0.32162,-61.717,0.31927,-0.27685,0.90632,14.964
    6746 
    6747 > view matrix models
    6748 > #14,0.94294,0.13505,-0.30435,46.978,-0.058897,0.96729,0.24675,-60.102,0.32772,-0.21474,0.92005,-2.67
    6749 
    6750 > ui mousemode right "translate selected models"
    6751 
    6752 > view matrix models
    6753 > #14,0.94294,0.13505,-0.30435,47.464,-0.058897,0.96729,0.24675,-60.328,0.32772,-0.21474,0.92005,-2.5666
    6754 
    6755 > view matrix models
    6756 > #14,0.94294,0.13505,-0.30435,47.403,-0.058897,0.96729,0.24675,-60.07,0.32772,-0.21474,0.92005,-2.4292
    6757 
    6758 > hide #!8 models
    6759 
    6760 > select add #16
    6761 
    6762 2038 atoms, 2039 bonds, 2 pseudobonds, 128 residues, 4 models selected 
    6763 
    6764 > select subtract #14
    6765 
    6766 1587 atoms, 1589 bonds, 1 pseudobond, 99 residues, 2 models selected 
    6767 
    6768 > select add #17
    6769 
    6770 1844 atoms, 1848 bonds, 1 pseudobond, 114 residues, 3 models selected 
    6771 
    6772 > select subtract #16
    6773 
    6774 257 atoms, 259 bonds, 15 residues, 1 model selected 
    6775 
    6776 > select add #18
    6777 
    6778 1587 atoms, 1588 bonds, 1 pseudobond, 99 residues, 3 models selected 
    6779 
    6780 > select subtract #18
    6781 
    6782 257 atoms, 259 bonds, 15 residues, 1 model selected 
    6783 
    6784 > select subtract #17
    6785 
    6786 Nothing selected 
    6787 
    6788 > select add #15
    6789 
    6790 450 atoms, 449 bonds, 30 residues, 1 model selected 
    6791 
    6792 > show #!8 models
    6793 
    6794 > ui mousemode right "rotate selected models"
    6795 
    6796 > view matrix models
    6797 > #15,0.82799,0.53803,-0.15798,-35.946,-0.52482,0.84277,0.11958,109.58,0.19748,-0.016101,0.98017,-33.309
    6798 
    6799 > show #!23 models
    6800 
    6801 > view matrix models
    6802 > #15,0.84681,0.50834,-0.15655,-33.685,-0.49655,0.86102,0.10994,102.29,0.19068,-0.015364,0.98153,-32.427
    6803 
    6804 > view matrix models
    6805 > #15,0.8478,0.50795,-0.15239,-34.614,-0.49462,0.86103,0.11825,100.28,0.19128,-0.02488,0.98122,-30.51
    6806 
    6807 > ui mousemode right zoom
    6808 
    6809 > ui mousemode right "translate selected models"
    6810 
    6811 > view matrix models
    6812 > #15,0.8478,0.50795,-0.15239,-34.996,-0.49462,0.86103,0.11825,100.97,0.19128,-0.02488,0.98122,-30.69
    6813 
    6814 > show #!26 models
    6815 
    6816 > hide #!26 models
    6817 
    6818 > view matrix models
    6819 > #15,0.8478,0.50795,-0.15239,-35.002,-0.49462,0.86103,0.11825,101.23,0.19128,-0.02488,0.98122,-30.049
    6820 
    6821 > view matrix models
    6822 > #15,0.8478,0.50795,-0.15239,-35.368,-0.49462,0.86103,0.11825,100.77,0.19128,-0.02488,0.98122,-29.525
    6823 
    6824 > view matrix models
    6825 > #15,0.8478,0.50795,-0.15239,-35.409,-0.49462,0.86103,0.11825,100.58,0.19128,-0.02488,0.98122,-29.695
    6826 
    6827 > view matrix models
    6828 > #15,0.8478,0.50795,-0.15239,-34.446,-0.49462,0.86103,0.11825,100.28,0.19128,-0.02488,0.98122,-29.775
    6829 
    6830 > view matrix models
    6831 > #15,0.8478,0.50795,-0.15239,-34.012,-0.49462,0.86103,0.11825,100.23,0.19128,-0.02488,0.98122,-29.454
    6832 
    6833 > view matrix models
    6834 > #15,0.8478,0.50795,-0.15239,-33.525,-0.49462,0.86103,0.11825,100.65,0.19128,-0.02488,0.98122,-29.444
    6835 
    6836 > select subtract #15
    6837 
    6838 Nothing selected 
    6839 
    6840 > select add #23
    6841 
    6842 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    6843 
    6844 > view matrix models
    6845 > #23,0.97014,-0.082217,-0.2282,69.666,0.06201,0.9936,-0.094363,11.968,0.2345,0.077394,0.96903,-55.32
    6846 
    6847 > view matrix models
    6848 > #23,0.97014,-0.082217,-0.2282,69.887,0.06201,0.9936,-0.094363,11.818,0.2345,0.077394,0.96903,-55.09
    6849 
    6850 > view matrix models
    6851 > #23,0.97014,-0.082217,-0.2282,69.936,0.06201,0.9936,-0.094363,11.805,0.2345,0.077394,0.96903,-55.085
    6852 
    6853 > view matrix models
    6854 > #23,0.97014,-0.082217,-0.2282,69.382,0.06201,0.9936,-0.094363,12.208,0.2345,0.077394,0.96903,-54.865
    6855 
    6856 > select subtract #23
    6857 
    6858 Nothing selected 
    6859 
    6860 > combine #13,14,15,17,18
    6861 
    6862 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    6863 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    6864 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    6865 
    6866 > combine #13,14,15,17,18
    6867 
    6868 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    6869 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    6870 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    6871 
    6872 > hide #!23 models
    6873 
    6874 > color #30 #942193ff
    6875 
    6876 > select add #30
    6877 
    6878 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    6879 
    6880 > hide #!13 models
    6881 
    6882 > hide #!14 models
    6883 
    6884 > hide #!15 models
    6885 
    6886 > hide #!17 models
    6887 
    6888 > hide #!18 models
    6889 
    6890 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    6891 > MRCLaboratoryofMolecularBiology/Documents/Carter
    6892 > Lab/Diorge/Membranes/Fit14-7.cxs"
    6893 
    6894 > view matrix models
    6895 > #30,0.93679,0.34915,0.022882,-62.691,-0.34379,0.93062,-0.12551,100.42,-0.065117,0.10971,0.99183,-13.008
    6896 
    6897 > view matrix models
    6898 > #30,0.93679,0.34915,0.022882,-64.628,-0.34379,0.93062,-0.12551,101.71,-0.065117,0.10971,0.99183,-13.237
    6899 
    6900 > view matrix models
    6901 > #30,0.93679,0.34915,0.022882,-65.248,-0.34379,0.93062,-0.12551,102.9,-0.065117,0.10971,0.99183,-10.662
    6902 
    6903 > view matrix models
    6904 > #30,0.93679,0.34915,0.022882,-66.264,-0.34379,0.93062,-0.12551,102.75,-0.065117,0.10971,0.99183,-10.056
    6905 
    6906 > volume #8 level 0.01346
    6907 
    6908 > fitmap sel inMap #8
    6909 
    6910 Fit molecule combination (#30) to map postprocess_masked330_onepf.mrc (#8)
    6911 using 2584 atoms 
    6912 average map value = 0.01305, steps = 72 
    6913 shifted from previous position = 3.11 
    6914 rotated from previous position = 2.08 degrees 
    6915 atoms outside contour = 1512, contour level = 0.013465 
    6916  
    6917 Position of combination (#30) relative to postprocess_masked330_onepf.mrc (#8)
    6918 coordinates: 
    6919 Matrix rotation and translation 
    6920 0.94719418 0.31878448 0.03463582 -61.71232335 
    6921 -0.31322383 0.94294139 -0.11292639 89.12280109 
    6922 -0.06865873 0.09611446 0.99299949 -7.59439916 
    6923 Axis 0.31031144 0.15333597 -0.93818702 
    6924 Axis point 240.90564884 235.08878975 0.00000000 
    6925 Rotation angle (degrees) 19.68350894 
    6926 Shift along axis 1.64065725 
    6927  
    6928 
    6929 > combine #13,14,15,17,18
    6930 
    6931 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    6932 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    6933 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    6934 
    6935 > color #31 #4f8f00ff
    6936 
    6937 > color #31 #73fdffff
    6938 
    6939 > select add #31
    6940 
    6941 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    6942 
    6943 > select subtract #30
    6944 
    6945 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    6946 
    6947 > view matrix models
    6948 > #31,0.93679,0.34915,0.022882,-68.26,-0.34379,0.93062,-0.12551,55.973,-0.065117,0.10971,0.99183,-17.389
    6949 
    6950 > view matrix models
    6951 > #31,0.93679,0.34915,0.022882,-67.381,-0.34379,0.93062,-0.12551,57.118,-0.065117,0.10971,0.99183,-15.003
    6952 
    6953 > ui mousemode right "move picked models"
    6954 
    6955 > ui mousemode right "rotate selected models"
    6956 
    6957 > view matrix models
    6958 > #31,0.85416,0.51997,-0.0069128,-83.91,-0.51465,0.84337,-0.15447,115.84,-0.074489,0.1355,0.98797,-18.23
    6959 
    6960 > view matrix models
    6961 > #31,0.82409,0.55849,-0.094657,-68.903,-0.56633,0.81585,-0.11689,124.41,0.011944,0.14993,0.98862,-38.37
    6962 
    6963 > ui mousemode right "translate selected models"
    6964 
    6965 > view matrix models
    6966 > #31,0.82409,0.55849,-0.094657,-67.649,-0.56633,0.81585,-0.11689,126.22,0.011944,0.14993,0.98862,-37.144
    6967 
    6968 > ui mousemode right "rotate selected models"
    6969 
    6970 > view matrix models
    6971 > #31,0.90597,0.42307,-0.01514,-69.115,-0.42311,0.90368,-0.065893,68.228,-0.014196,0.066103,0.99771,-14.984
    6972 
    6973 > ui mousemode right "translate selected models"
    6974 
    6975 > view matrix models
    6976 > #31,0.90597,0.42307,-0.01514,-70.663,-0.42311,0.90368,-0.065893,64.726,-0.014196,0.066103,0.99771,-16.257
    6977 
    6978 > fitmap sel inMap #8
    6979 
    6980 Fit molecule combination (#31) to map postprocess_masked330_onepf.mrc (#8)
    6981 using 2584 atoms 
    6982 average map value = 0.01087, steps = 108 
    6983 shifted from previous position = 3.84 
    6984 rotated from previous position = 6 degrees 
    6985 atoms outside contour = 1650, contour level = 0.013465 
    6986  
    6987 Position of combination (#31) relative to postprocess_masked330_onepf.mrc (#8)
    6988 coordinates: 
    6989 Matrix rotation and translation 
    6990 0.93906111 0.34356277 0.01135146 -64.20384039 
    6991 -0.33989292 0.93295036 -0.11864409 50.39987774 
    6992 -0.05135204 0.10755577 0.99287196 -13.93066859 
    6993 Axis 0.31301836 0.08676994 -0.94577507 
    6994 Axis point 108.72154288 203.83897060 0.00000000 
    6995 Rotation angle (degrees) 21.18130965 
    6996 Shift along axis -2.54850775 
    6997  
    6998 
    6999 > hide #!8 models
    7000 
    7001 > show #!8 models
    7002 
    7003 > show #!14 models
    7004 
    7005 > select add #14
    7006 
    7007 3035 atoms, 3032 bonds, 4 pseudobonds, 195 residues, 4 models selected 
    7008 
    7009 > show #!13 models
    7010 
    7011 > hide #!14 models
    7012 
    7013 > select add #13
    7014 
    7015 3131 atoms, 3127 bonds, 5 pseudobonds, 203 residues, 6 models selected 
    7016 
    7017 > select subtract #14
    7018 
    7019 2680 atoms, 2677 bonds, 4 pseudobonds, 174 residues, 4 models selected 
    7020 
    7021 > select subtract #13
    7022 
    7023 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7024 
    7025 > show #!15 models
    7026 
    7027 > hide #!13 models
    7028 
    7029 > select add #15
    7030 
    7031 3034 atoms, 3031 bonds, 3 pseudobonds, 196 residues, 3 models selected 
    7032 
    7033 > ui mousemode right "rotate selected models"
    7034 
    7035 > select subtract #31
    7036 
    7037 450 atoms, 449 bonds, 30 residues, 1 model selected 
    7038 
    7039 > view matrix models
    7040 > #15,0.84068,0.5199,-0.15156,-34.799,-0.50486,0.85366,0.12796,102.22,0.1959,-0.031057,0.98013,-28.836
    7041 
    7042 > undo
    7043 
    7044 > view matrix models
    7045 > #15,0.91536,0.36828,-0.16274,-15.504,-0.37548,0.92671,-0.014764,90.463,0.14537,0.074619,0.98656,-42.307
    7046 
    7047 > ui mousemode right "translate selected models"
    7048 
    7049 > view matrix models
    7050 > #15,0.91536,0.36828,-0.16274,-19.806,-0.37548,0.92671,-0.014764,90.908,0.14537,0.074619,0.98656,-39.266
    7051 
    7052 > view matrix models
    7053 > #15,0.91536,0.36828,-0.16274,-19.431,-0.37548,0.92671,-0.014764,90.586,0.14537,0.074619,0.98656,-40.223
    7054 
    7055 > hide #!29 models
    7056 
    7057 > view matrix models
    7058 > #15,0.91536,0.36828,-0.16274,-19.196,-0.37548,0.92671,-0.014764,90.447,0.14537,0.074619,0.98656,-40.891
    7059 
    7060 > ui mousemode right "rotate selected models"
    7061 
    7062 > view matrix models
    7063 > #15,0.9019,0.40197,-0.15807,-24.514,-0.3997,0.91542,0.047351,85.179,0.16373,0.020474,0.98629,-33.145
    7064 
    7065 > view matrix models
    7066 > #15,0.92278,0.35915,-0.1396,-23.285,-0.35651,0.93324,0.044357,73.813,0.14621,0.0088357,0.98921,-27.957
    7067 
    7068 > view matrix models
    7069 > #15,0.94056,0.32376,-0.10254,-26.668,-0.3208,0.94609,0.044612,64.269,0.11146,-0.0090642,0.99373,-18.49
    7070 
    7071 > ui mousemode right "translate selected models"
    7072 
    7073 > view matrix models
    7074 > #15,0.94056,0.32376,-0.10254,-30.001,-0.3208,0.94609,0.044612,65.511,0.11146,-0.0090642,0.99373,-17.181
    7075 
    7076 > view matrix models
    7077 > #15,0.94056,0.32376,-0.10254,-29.924,-0.3208,0.94609,0.044612,65.455,0.11146,-0.0090642,0.99373,-17.205
    7078 
    7079 > view matrix models
    7080 > #15,0.94056,0.32376,-0.10254,-30.702,-0.3208,0.94609,0.044612,66.082,0.11146,-0.0090642,0.99373,-18.252
    7081 
    7082 > show #!29 models
    7083 
    7084 > view matrix models
    7085 > #15,0.94056,0.32376,-0.10254,-30.985,-0.3208,0.94609,0.044612,64.895,0.11146,-0.0090642,0.99373,-18.08
    7086 
    7087 > view matrix models
    7088 > #15,0.94056,0.32376,-0.10254,-30.807,-0.3208,0.94609,0.044612,64.368,0.11146,-0.0090642,0.99373,-18.508
    7089 
    7090 > view matrix models
    7091 > #15,0.94056,0.32376,-0.10254,-31.101,-0.3208,0.94609,0.044612,64.873,0.11146,-0.0090642,0.99373,-18.105
    7092 
    7093 > view matrix models
    7094 > #15,0.94056,0.32376,-0.10254,-31.171,-0.3208,0.94609,0.044612,64.319,0.11146,-0.0090642,0.99373,-18.506
    7095 
    7096 > close #30-31
    7097 
    7098 > hide #!29 models
    7099 
    7100 > show #!29 models
    7101 
    7102 > hide #!29 models
    7103 
    7104 > close #29
    7105 
    7106 > combine #13,14,15,17,18
    7107 
    7108 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7109 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7110 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7111 
    7112 > combine #13,14,15,17,18
    7113 
    7114 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7115 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7116 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7117 
    7118 > combine #13,14,15,17,18
    7119 
    7120 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7121 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7122 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7123 
    7124 > color #30 #73fcd6ff
    7125 
    7126 > color #31 #fffb00ff
    7127 
    7128 > select subtract #15
    7129 
    7130 Nothing selected 
    7131 
    7132 > select add #31
    7133 
    7134 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7135 
    7136 > view matrix models
    7137 > #31,0.93679,0.34915,0.022882,-63.688,-0.34379,0.93062,-0.12551,101.65,-0.065117,0.10971,0.99183,-8.4868
    7138 
    7139 > view matrix models
    7140 > #31,0.93679,0.34915,0.022882,-65.189,-0.34379,0.93062,-0.12551,101.18,-0.065117,0.10971,0.99183,-7.6541
    7141 
    7142 > fitmap sel inMap #8
    7143 
    7144 Fit molecule combination (#31) to map postprocess_masked330_onepf.mrc (#8)
    7145 using 2584 atoms 
    7146 average map value = 0.0137, steps = 76 
    7147 shifted from previous position = 3.78 
    7148 rotated from previous position = 4.9 degrees 
    7149 atoms outside contour = 1463, contour level = 0.013465 
    7150  
    7151 Position of combination (#31) relative to postprocess_masked330_onepf.mrc (#8)
    7152 coordinates: 
    7153 Matrix rotation and translation 
    7154 0.96242794 0.26898400 0.03714923 -53.88391592 
    7155 -0.26305694 0.95752790 -0.11807354 77.16350417 
    7156 -0.06733131 0.10386492 0.99230972 -9.64230344 
    7157 Axis 0.37882039 0.17833484 -0.90812543 
    7158 Axis point 253.37054412 238.67962122 0.00000000 
    7159 Rotation angle (degrees) 17.03366943 
    7160 Shift along axis 2.10503599 
    7161  
    7162 
    7163 > select add #30
    7164 
    7165 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    7166 
    7167 > select subtract #31
    7168 
    7169 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7170 
    7171 > view matrix models
    7172 > #30,0.93679,0.34915,0.022882,-73.179,-0.34379,0.93062,-0.12551,53.002,-0.065117,0.10971,0.99183,-11.821
    7173 
    7174 > view matrix models
    7175 > #30,0.93679,0.34915,0.022882,-71.417,-0.34379,0.93062,-0.12551,53.356,-0.065117,0.10971,0.99183,-13.368
    7176 
    7177 > fitmap sel inMap #8
    7178 
    7179 Fit molecule combination (#30) to map postprocess_masked330_onepf.mrc (#8)
    7180 using 2584 atoms 
    7181 average map value = 0.0105, steps = 104 
    7182 shifted from previous position = 6.82 
    7183 rotated from previous position = 7.16 degrees 
    7184 atoms outside contour = 1733, contour level = 0.013465 
    7185  
    7186 Position of combination (#30) relative to postprocess_masked330_onepf.mrc (#8)
    7187 coordinates: 
    7188 Matrix rotation and translation 
    7189 0.90383259 0.42370816 -0.05964936 -58.51606967 
    7190 -0.42734719 0.90087496 -0.07614907 65.75524177 
    7191 0.02147163 0.09431700 0.99531064 -25.53239206 
    7192 Axis 0.19554643 -0.09305617 -0.97626950 
    7193 Axis point 116.51572139 167.94879785 0.00000000 
    7194 Rotation angle (degrees) 25.84073691 
    7195 Shift along axis 7.36495629 
    7196  
    7197 
    7198 > view matrix models
    7199 > #30,0.90386,0.42376,-0.05881,-56.66,-0.42732,0.90088,-0.076216,62.013,0.020684,0.094019,0.99536,-24.605
    7200 
    7201 > view matrix models
    7202 > #30,0.90386,0.42376,-0.05881,-62.521,-0.42732,0.90088,-0.076216,67.035,0.020684,0.094019,0.99536,-24.977
    7203 
    7204 > view matrix models
    7205 > #30,0.90386,0.42376,-0.05881,-62.566,-0.42732,0.90088,-0.076216,66.975,0.020684,0.094019,0.99536,-24.965
    7206 
    7207 > fitmap sel inMap #8
    7208 
    7209 Fit molecule combination (#30) to map postprocess_masked330_onepf.mrc (#8)
    7210 using 2584 atoms 
    7211 average map value = 0.0105, steps = 56 
    7212 shifted from previous position = 3.95 
    7213 rotated from previous position = 0.00463 degrees 
    7214 atoms outside contour = 1734, contour level = 0.013465 
    7215  
    7216 Position of combination (#30) relative to postprocess_masked330_onepf.mrc (#8)
    7217 coordinates: 
    7218 Matrix rotation and translation 
    7219 0.90385203 0.42366592 -0.05965485 -58.50966574 
    7220 -0.42730425 0.90090065 -0.07608616 65.72732695 
    7221 0.02150798 0.09426140 0.99531512 -25.52860500 
    7222 Axis 0.19543344 -0.09311509 -0.97628651 
    7223 Axis point 116.47693942 167.93584813 0.00000000 
    7224 Rotation angle (degrees) 25.83747664 
    7225 Shift along axis 7.36828130 
    7226  
    7227 
    7228 > view matrix models
    7229 > #30,0.90388,0.42372,-0.058815,-62.833,-0.42728,0.90091,-0.076153,66.371,0.02072,0.093963,0.99536,-25.131
    7230 
    7231 > view matrix models
    7232 > #30,0.90388,0.42372,-0.058815,-61.91,-0.42728,0.90091,-0.076153,66.948,0.02072,0.093963,0.99536,-25.257
    7233 
    7234 > combine #13,14,15,17,18
    7235 
    7236 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7237 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7238 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7239 
    7240 > color #32 #ff40ffff
    7241 
    7242 > select add #32
    7243 
    7244 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    7245 
    7246 > select subtract #30
    7247 
    7248 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7249 
    7250 > view matrix models
    7251 > #32,0.93679,0.34915,0.022882,-71.233,-0.34379,0.93062,-0.12551,31.398,-0.065117,0.10971,0.99183,-18.788
    7252 
    7253 > view matrix models
    7254 > #32,0.93679,0.34915,0.022882,-71.905,-0.34379,0.93062,-0.12551,32.723,-0.065117,0.10971,0.99183,-12.806
    7255 
    7256 > fitmap sel inMap #8
    7257 
    7258 Fit molecule combination (#32) to map postprocess_masked330_onepf.mrc (#8)
    7259 using 2584 atoms 
    7260 average map value = 0.007417, steps = 248 
    7261 shifted from previous position = 6.6 
    7262 rotated from previous position = 13.1 degrees 
    7263 atoms outside contour = 1972, contour level = 0.013465 
    7264  
    7265 Position of combination (#32) relative to postprocess_masked330_onepf.mrc (#8)
    7266 coordinates: 
    7267 Matrix rotation and translation 
    7268 0.84793356 0.52248716 -0.08953125 -67.52617584 
    7269 -0.52912700 0.84445592 -0.08317945 75.17707792 
    7270 0.03214499 0.11790405 0.99250458 -32.02887516 
    7271 Axis 0.18661031 -0.11291847 -0.97592316 
    7272 Axis point 96.89786555 161.07285308 0.00000000 
    7273 Rotation angle (degrees) 32.60057113 
    7274 Shift along axis 10.16775997 
    7275  
    7276 
    7277 > view matrix models
    7278 > #32,0.84798,0.52256,-0.088694,-70.705,-0.5291,0.84447,-0.083247,78.208,0.031397,0.11752,0.99257,-31.208
    7279 
    7280 > view matrix models
    7281 > #32,0.84798,0.52256,-0.088694,-70.468,-0.5291,0.84447,-0.083247,78.813,0.031397,0.11752,0.99257,-31.852
    7282 
    7283 > view matrix models
    7284 > #32,0.84798,0.52256,-0.088694,-70.915,-0.5291,0.84447,-0.083247,79.238,0.031397,0.11752,0.99257,-31.502
    7285 
    7286 > ui windowfill toggle
    7287 
    7288 [Repeated 1 time(s)]
    7289 
    7290 > hide #!32 models
    7291 
    7292 > hide #!31 models
    7293 
    7294 > hide #!30 models
    7295 
    7296 > hide #!29 models
    7297 
    7298 > show #!32 models
    7299 
    7300 > show #!31 models
    7301 
    7302 > show #!30 models
    7303 
    7304 > show #!29 models
    7305 
    7306 > hide #!32 models
    7307 
    7308 > hide #!31 models
    7309 
    7310 > hide #!30 models
    7311 
    7312 > hide #!29 models
    7313 
    7314 > select subtract #32
    7315 
    7316 Nothing selected 
    7317 
    7318 > select add #15
    7319 
    7320 450 atoms, 449 bonds, 30 residues, 1 model selected 
    7321 
    7322 > view matrix models
    7323 > #15,0.94056,0.32376,-0.10254,-30.711,-0.3208,0.94609,0.044612,68.566,0.11146,-0.0090642,0.99373,-19.008
    7324 
    7325 > show #!30 models
    7326 
    7327 > hide #!30 models
    7328 
    7329 > show #!14 models
    7330 
    7331 > select add #14
    7332 
    7333 901 atoms, 899 bonds, 1 pseudobond, 59 residues, 3 models selected 
    7334 
    7335 > select subtract #15
    7336 
    7337 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    7338 
    7339 > ui mousemode right "rotate selected models"
    7340 
    7341 > view matrix models
    7342 > #14,0.88001,0.42518,-0.21166,-20.504,-0.33244,0.86969,0.36486,-8.3943,0.33921,-0.25072,0.90668,5.6314
    7343 
    7344 > ui mousemode right "translate selected models"
    7345 
    7346 > view matrix models
    7347 > #14,0.88001,0.42518,-0.21166,-25.847,-0.33244,0.86969,0.36486,-4.5312,0.33921,-0.25072,0.90668,6.2681
    7348 
    7349 > ui mousemode right "rotate selected models"
    7350 
    7351 > view matrix models
    7352 > #14,0.84971,0.50639,-0.14684,-49.818,-0.40191,0.80234,0.44126,8.8752,0.34127,-0.31593,0.88528,23.991
    7353 
    7354 > ui mousemode right "translate selected models"
    7355 
    7356 > view matrix models
    7357 > #14,0.84971,0.50639,-0.14684,-51.173,-0.40191,0.80234,0.44126,8.5088,0.34127,-0.31593,0.88528,24.728
    7358 
    7359 > ui mousemode right "rotate selected models"
    7360 
    7361 > view matrix models
    7362 > #14,0.83927,0.53383,-0.10322,-63.389,-0.42543,0.76295,0.48673,12.867,0.33858,-0.36459,0.86743,39.137
    7363 
    7364 > select add #15
    7365 
    7366 901 atoms, 899 bonds, 1 pseudobond, 59 residues, 3 models selected 
    7367 
    7368 > select subtract #14
    7369 
    7370 450 atoms, 449 bonds, 30 residues, 1 model selected 
    7371 
    7372 > view matrix models
    7373 > #15,0.94772,0.30064,-0.10698,-26.419,-0.3038,0.95263,-0.014209,75.553,0.097641,0.045967,0.99416,-27.84
    7374 
    7375 > ui mousemode right "translate selected models"
    7376 
    7377 > view matrix models
    7378 > #15,0.94772,0.30064,-0.10698,-25.978,-0.3038,0.95263,-0.014209,75.325,0.097641,0.045967,0.99416,-28.909
    7379 
    7380 > view matrix models
    7381 > #15,0.94772,0.30064,-0.10698,-25.796,-0.3038,0.95263,-0.014209,75.202,0.097641,0.045967,0.99416,-29.677
    7382 
    7383 > view matrix models
    7384 > #15,0.94772,0.30064,-0.10698,-25.22,-0.3038,0.95263,-0.014209,75.315,0.097641,0.045967,0.99416,-29.378
    7385 
    7386 > select add #14
    7387 
    7388 901 atoms, 899 bonds, 1 pseudobond, 59 residues, 3 models selected 
    7389 
    7390 > select subtract #15
    7391 
    7392 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    7393 
    7394 > ui mousemode right "rotate selected models"
    7395 
    7396 > view matrix models
    7397 > #14,0.89542,0.43806,-0.079483,-58.257,-0.32999,0.77286,0.54203,-18.426,0.29887,-0.45912,0.83659,73.109
    7398 
    7399 > view matrix models
    7400 > #14,0.89146,0.44459,-0.087441,-57.366,-0.33082,0.7705,0.54488,-18.302,0.30962,-0.45681,0.83394,71.027
    7401 
    7402 > ui mousemode right "translate selected models"
    7403 
    7404 > view matrix models
    7405 > #14,0.89146,0.44459,-0.087441,-57.2,-0.33082,0.7705,0.54488,-18.845,0.30962,-0.45681,0.83394,71.886
    7406 
    7407 > view matrix models
    7408 > #14,0.89146,0.44459,-0.087441,-57.03,-0.33082,0.7705,0.54488,-18.859,0.30962,-0.45681,0.83394,72.14
    7409 
    7410 > view matrix models
    7411 > #14,0.89146,0.44459,-0.087441,-57.585,-0.33082,0.7705,0.54488,-18.498,0.30962,-0.45681,0.83394,72.252
    7412 
    7413 > combine #13,14,15,17,18
    7414 
    7415 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7416 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7417 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7418 
    7419 > hide #!14 models
    7420 
    7421 > hide #!15 models
    7422 
    7423 > select subtract #14
    7424 
    7425 Nothing selected 
    7426 
    7427 > combine #13,14,15,17,18
    7428 
    7429 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7430 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7431 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7432 
    7433 > combine #13,14,15,17,18
    7434 
    7435 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7436 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7437 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7438 
    7439 > color #34 #ff85ffff
    7440 
    7441 > color #35 #fffc79ff
    7442 
    7443 > select add #34
    7444 
    7445 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7446 
    7447 > view matrix models
    7448 > #34,0.93679,0.34915,0.022882,-63.948,-0.34379,0.93062,-0.12551,101.07,-0.065117,0.10971,0.99183,-8.8311
    7449 
    7450 > fitmap sel inMap #8
    7451 
    7452 Fit molecule combination (#34) to map postprocess_masked330_onepf.mrc (#8)
    7453 using 2584 atoms 
    7454 average map value = 0.01309, steps = 68 
    7455 shifted from previous position = 2.75 
    7456 rotated from previous position = 4.67 degrees 
    7457 atoms outside contour = 1525, contour level = 0.013465 
    7458  
    7459 Position of combination (#34) relative to postprocess_masked330_onepf.mrc (#8)
    7460 coordinates: 
    7461 Matrix rotation and translation 
    7462 0.95788371 0.28066574 0.06070867 -61.42695670 
    7463 -0.27233693 0.95495467 -0.11787358 80.07796963 
    7464 -0.09105710 0.09637597 0.99117116 -2.89821379 
    7465 Axis 0.34998581 0.24791589 -0.90335355 
    7466 Axis point 250.53589003 257.66891761 0.00000000 
    7467 Rotation angle (degrees) 17.82334309 
    7468 Shift along axis 0.97214953 
    7469  
    7470 
    7471 > view matrix models
    7472 > #34,0.95782,0.28071,0.061546,-60.32,-0.2723,0.95496,-0.11794,78.858,-0.091881,0.096202,0.99111,-4.3242
    7473 
    7474 > view matrix models
    7475 > #34,0.95782,0.28071,0.061546,-59.97,-0.2723,0.95496,-0.11794,78.81,-0.091881,0.096202,0.99111,-4.2979
    7476 
    7477 > view matrix models
    7478 > #34,0.95782,0.28071,0.061546,-59.123,-0.2723,0.95496,-0.11794,77.645,-0.091881,0.096202,0.99111,-5.7533
    7479 
    7480 > view matrix models
    7481 > #34,0.95782,0.28071,0.061546,-58.98,-0.2723,0.95496,-0.11794,78.65,-0.091881,0.096202,0.99111,-2.2808
    7482 
    7483 > hide #!34 models
    7484 
    7485 > hide #!35 models
    7486 
    7487 > show #!34 models
    7488 
    7489 > hide #!34 models
    7490 
    7491 > hide #!33 models
    7492 
    7493 > select subtract #34
    7494 
    7495 Nothing selected 
    7496 
    7497 > show #!24 models
    7498 
    7499 > hide #!24 models
    7500 
    7501 > show #!13 models
    7502 
    7503 > show #!14 models
    7504 
    7505 > show #!15 models
    7506 
    7507 > show #!17 models
    7508 
    7509 > show #!18 models
    7510 
    7511 > select add #15
    7512 
    7513 450 atoms, 449 bonds, 30 residues, 1 model selected 
    7514 
    7515 > view matrix models
    7516 > #15,0.94772,0.30064,-0.10698,-26.089,-0.3038,0.95263,-0.014209,75.894,0.097641,0.045967,0.99416,-25.22
    7517 
    7518 > view matrix models
    7519 > #15,0.94772,0.30064,-0.10698,-26.362,-0.3038,0.95263,-0.014209,75.63,0.097641,0.045967,0.99416,-25.834
    7520 
    7521 > view matrix models
    7522 > #15,0.94772,0.30064,-0.10698,-26.488,-0.3038,0.95263,-0.014209,75.411,0.097641,0.045967,0.99416,-26.476
    7523 
    7524 > ui mousemode right "rotate selected models"
    7525 
    7526 > view matrix models
    7527 > #15,0.94016,0.32447,-0.10402,-30.557,-0.32093,0.9458,0.049655,67.515,0.1145,-0.013299,0.99333,-17.271
    7528 
    7529 > view matrix models
    7530 > #15,0.94158,0.32353,-0.093578,-32.692,-0.32003,0.94605,0.050611,67.103,0.1049,-0.017707,0.99432,-14.718
    7531 
    7532 > ui mousemode right "translate selected models"
    7533 
    7534 > view matrix models
    7535 > #15,0.94158,0.32353,-0.093578,-33.233,-0.32003,0.94605,0.050611,67.312,0.1049,-0.017707,0.99432,-14.081
    7536 
    7537 > hide #!8 models
    7538 
    7539 > show #!8 models
    7540 
    7541 > ui mousemode right "rotate selected models"
    7542 
    7543 > view matrix models
    7544 > #15,0.98106,0.18292,-0.06379,-17.553,-0.18852,0.97726,-0.097062,64.786,0.044585,0.10725,0.99323,-28.187
    7545 
    7546 > view matrix models
    7547 > #15,0.96664,0.24357,-0.079264,-24.298,-0.24682,0.96846,-0.034087,65.354,0.068461,0.052513,0.99627,-22.026
    7548 
    7549 > view matrix models
    7550 > #15,0.99457,0.051063,-0.090684,12.456,-0.036153,0.98661,0.15905,-16.789,0.097591,-0.1549,0.9831,17.932
    7551 
    7552 > view matrix models
    7553 > #15,0.94647,-0.095298,-0.3084,94.87,0.03881,0.98209,-0.18437,37.482,0.32045,0.16253,0.93322,-80.602
    7554 
    7555 > ui mousemode right "translate selected models"
    7556 
    7557 > view matrix models
    7558 > #15,0.94647,-0.095298,-0.3084,95.112,0.03881,0.98209,-0.18437,36.746,0.32045,0.16253,0.93322,-82.273
    7559 
    7560 > view matrix models
    7561 > #15,0.94647,-0.095298,-0.3084,94.558,0.03881,0.98209,-0.18437,36.1,0.32045,0.16253,0.93322,-81.104
    7562 
    7563 > view matrix models
    7564 > #15,0.94647,-0.095298,-0.3084,94.731,0.03881,0.98209,-0.18437,36.381,0.32045,0.16253,0.93322,-81.004
    7565 
    7566 > ui mousemode right "rotate selected models"
    7567 
    7568 > view matrix models
    7569 > #15,0.945,-0.079199,-0.31732,93.438,0.02666,0.98566,-0.16661,34.467,0.32597,0.14899,0.93357,-79.326
    7570 
    7571 > select clear
    7572 
    7573 > combine #13,14,15,17,18
    7574 
    7575 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7576 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7577 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7578 
    7579 > combine #13,14,15,17,18
    7580 
    7581 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7582 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7583 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7584 
    7585 > combine #13,14,15,17,18
    7586 
    7587 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7588 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7589 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7590 
    7591 > color #37 #8efa00ff
    7592 
    7593 > color #38 #fffc79ff
    7594 
    7595 > select add #37
    7596 
    7597 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7598 
    7599 > view matrix models
    7600 > #37,0.9385,0.34222,-0.045796,-49.568,-0.31704,0.80162,-0.50684,180.14,-0.13674,0.49019,0.86082,-56.619
    7601 
    7602 > undo
    7603 
    7604 > ui mousemode right "translate selected models"
    7605 
    7606 > view matrix models
    7607 > #37,0.93679,0.34915,0.022882,-61.476,-0.34379,0.93062,-0.12551,98.453,-0.065117,0.10971,0.99183,-5.2765
    7608 
    7609 > fitmap sel inMap #8
    7610 
    7611 Fit molecule combination (#37) to map postprocess_masked330_onepf.mrc (#8)
    7612 using 2584 atoms 
    7613 average map value = 0.01285, steps = 92 
    7614 shifted from previous position = 6.68 
    7615 rotated from previous position = 4.42 degrees 
    7616 atoms outside contour = 1504, contour level = 0.013465 
    7617  
    7618 Position of combination (#37) relative to postprocess_masked330_onepf.mrc (#8)
    7619 coordinates: 
    7620 Matrix rotation and translation 
    7621 0.93230159 0.35691343 0.05853671 -72.58255923 
    7622 -0.35368843 0.93351547 -0.05876528 88.20520272 
    7623 -0.07561905 0.03408321 0.99655411 7.55297659 
    7624 Axis 0.12734829 0.18400415 -0.97464090 
    7625 Axis point 204.10263520 241.94180690 0.00000000 
    7626 Rotation angle (degrees) 21.37961317 
    7627 Shift along axis -0.37458156 
    7628  
    7629 
    7630 > close #37-38
    7631 
    7632 > hide #!36 models
    7633 
    7634 > select add #18
    7635 
    7636 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    7637 
    7638 > select subtract #18
    7639 
    7640 Nothing selected 
    7641 
    7642 > select add #15
    7643 
    7644 450 atoms, 449 bonds, 30 residues, 1 model selected 
    7645 
    7646 > ui mousemode right "rotate selected models"
    7647 
    7648 > view matrix models
    7649 > #15,0.92903,0.12514,-0.34819,60.28,-0.17284,0.97886,-0.10936,62.777,0.32714,0.16178,0.93102,-81.699
    7650 
    7651 > ui mousemode right "translate selected models"
    7652 
    7653 > view matrix models
    7654 > #15,0.92903,0.12514,-0.34819,60.883,-0.17284,0.97886,-0.10936,64.339,0.32714,0.16178,0.93102,-81.466
    7655 
    7656 > view matrix models
    7657 > #15,0.92903,0.12514,-0.34819,60.725,-0.17284,0.97886,-0.10936,63.814,0.32714,0.16178,0.93102,-82.594
    7658 
    7659 > view matrix models
    7660 > #15,0.92903,0.12514,-0.34819,61.472,-0.17284,0.97886,-0.10936,64.619,0.32714,0.16178,0.93102,-82.965
    7661 
    7662 > combine #13,14,15,17,18
    7663 
    7664 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7665 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7666 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7667 
    7668 > combine #13,14,15,17,18
    7669 
    7670 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7671 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7672 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7673 
    7674 > select subtract #15
    7675 
    7676 Nothing selected 
    7677 
    7678 > color #37 #9437ffff
    7679 
    7680 > color #38 #fffc79ff
    7681 
    7682 > select add #37
    7683 
    7684 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7685 
    7686 > view matrix models
    7687 > #37,0.93679,0.34915,0.022882,-64.653,-0.34379,0.93062,-0.12551,101.14,-0.065117,0.10971,0.99183,-10.958
    7688 
    7689 > fitmap sel inMap #8
    7690 
    7691 Fit molecule combination (#37) to map postprocess_masked330_onepf.mrc (#8)
    7692 using 2584 atoms 
    7693 average map value = 0.01317, steps = 76 
    7694 shifted from previous position = 0.612 
    7695 rotated from previous position = 5.31 degrees 
    7696 atoms outside contour = 1502, contour level = 0.013465 
    7697  
    7698 Position of combination (#37) relative to postprocess_masked330_onepf.mrc (#8)
    7699 coordinates: 
    7700 Matrix rotation and translation 
    7701 0.94687968 0.31403786 0.06927543 -68.41121818 
    7702 -0.31085182 0.94897655 -0.05305337 75.22393710 
    7703 -0.08240153 0.02870076 0.99618585 10.01633362 
    7704 Axis 0.12612283 0.23399339 -0.96402289 
    7705 Axis point 201.20792111 251.60467556 0.00000000 
    7706 Rotation angle (degrees) 18.91137332 
    7707 Shift along axis -0.68228664 
    7708  
    7709 
    7710 > select subtract #37
    7711 
    7712 Nothing selected 
    7713 
    7714 > select add #38
    7715 
    7716 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7717 
    7718 > view matrix models
    7719 > #38,0.93679,0.34915,0.022882,-68.724,-0.34379,0.93062,-0.12551,56.67,-0.065117,0.10971,0.99183,-20.653
    7720 
    7721 > fitmap sel inMap #8
    7722 
    7723 Fit molecule combination (#38) to map postprocess_masked330_onepf.mrc (#8)
    7724 using 2584 atoms 
    7725 average map value = 0.01151, steps = 120 
    7726 shifted from previous position = 10.1 
    7727 rotated from previous position = 5.61 degrees 
    7728 atoms outside contour = 1607, contour level = 0.013465 
    7729  
    7730 Position of combination (#38) relative to postprocess_masked330_onepf.mrc (#8)
    7731 coordinates: 
    7732 Matrix rotation and translation 
    7733 0.92817645 0.37094196 -0.02984186 -58.64119919 
    7734 -0.36895607 0.90680286 -0.20391173 80.25033291 
    7735 -0.04857873 0.20027640 0.97853435 -32.58645977 
    7736 Axis 0.47928891 0.02221829 -0.87737591 
    7737 Axis point 168.45837917 193.63481182 0.00000000 
    7738 Rotation angle (degrees) 24.93905224 
    7739 Shift along axis 2.26752362 
    7740  
    7741 
    7742 > hide #!8 models
    7743 
    7744 > show #!8 models
    7745 
    7746 > hide #!13-20 target m
    7747 
    7748 > hide #!8 models
    7749 
    7750 > show #!9 models
    7751 
    7752 > select subtract #38
    7753 
    7754 Nothing selected 
    7755 
    7756 > hide #!38 models
    7757 
    7758 > hide #!37 models
    7759 
    7760 > hide #!9 models
    7761 
    7762 > show #!18 models
    7763 
    7764 > show #!17 models
    7765 
    7766 > show #!15 models
    7767 
    7768 > show #!14 models
    7769 
    7770 > show #!13 models
    7771 
    7772 > hide #!13-20 target m
    7773 
    7774 > show #!36 models
    7775 
    7776 > show #!37 models
    7777 
    7778 > show #!38 models
    7779 
    7780 > combine #13,14,15,17,18
    7781 
    7782 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7783 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7784 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7785 
    7786 > color #39 #00fdffff
    7787 
    7788 > select add #39
    7789 
    7790 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7791 
    7792 > hide #!36 models
    7793 
    7794 > show #!36 models
    7795 
    7796 > hide #!36 models
    7797 
    7798 > close #36-39
    7799 
    7800 > combine #13,14,15,17,18
    7801 
    7802 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7803 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7804 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7805 
    7806 > combine #13,14,15,17,18
    7807 
    7808 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7809 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7810 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7811 
    7812 > combine #13,14,15,17,18
    7813 
    7814 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7815 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7816 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7817 
    7818 > combine #13,14,15,17,18
    7819 
    7820 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7821 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7822 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7823 
    7824 > color #37 #73fdffff
    7825 
    7826 > color #38 #76d6ffff
    7827 
    7828 > color #38 #73fa79ff
    7829 
    7830 > color #39 #fffc79ff
    7831 
    7832 > show #!8 models
    7833 
    7834 > select add #36
    7835 
    7836 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7837 
    7838 > select add #37
    7839 
    7840 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    7841 
    7842 > select subtract #36
    7843 
    7844 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7845 
    7846 > view matrix models
    7847 > #37,0.93679,0.34915,0.022882,-64.395,-0.34379,0.93062,-0.12551,101.94,-0.065117,0.10971,0.99183,-10.433
    7848 
    7849 > fitmap sel inMap #8
    7850 
    7851 Fit molecule combination (#37) to map postprocess_masked330_onepf.mrc (#8)
    7852 using 2584 atoms 
    7853 average map value = 0.01317, steps = 92 
    7854 shifted from previous position = 1.57 
    7855 rotated from previous position = 5.3 degrees 
    7856 atoms outside contour = 1499, contour level = 0.013465 
    7857  
    7858 Position of combination (#37) relative to postprocess_masked330_onepf.mrc (#8)
    7859 coordinates: 
    7860 Matrix rotation and translation 
    7861 0.94693797 0.31397208 0.06877509 -68.31894225 
    7862 -0.31080190 0.94899393 -0.05303487 75.17806955 
    7863 -0.08191861 0.02884531 0.99622151 9.84988127 
    7864 Axis 0.12638066 0.23259314 -0.96432793 
    7865 Axis point 201.12292272 251.32549683 0.00000000 
    7866 Rotation angle (degrees) 18.90153083 
    7867 Shift along axis -0.64680544 
    7868  
    7869 
    7870 > select add #38
    7871 
    7872 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    7873 
    7874 > select subtract #37
    7875 
    7876 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7877 
    7878 > view matrix models
    7879 > #38,0.93679,0.34915,0.022882,-71.514,-0.34379,0.93062,-0.12551,52.621,-0.065117,0.10971,0.99183,-11.498
    7880 
    7881 > fitmap sel inMap #8
    7882 
    7883 Fit molecule combination (#38) to map postprocess_masked330_onepf.mrc (#8)
    7884 using 2584 atoms 
    7885 average map value = 0.01151, steps = 112 
    7886 shifted from previous position = 5.39 
    7887 rotated from previous position = 5.61 degrees 
    7888 atoms outside contour = 1611, contour level = 0.013465 
    7889  
    7890 Position of combination (#38) relative to postprocess_masked330_onepf.mrc (#8)
    7891 coordinates: 
    7892 Matrix rotation and translation 
    7893 0.92816793 0.37096041 -0.02987753 -58.63312168 
    7894 -0.36898453 0.90680628 -0.20384502 80.22859145 
    7895 -0.04852530 0.20022676 0.97854716 -32.60412219 
    7896 Axis 0.47916037 0.02211308 -0.87744877 
    7897 Axis point 168.39146606 193.61982832 0.00000000 
    7898 Rotation angle (degrees) 24.93852873 
    7899 Shift along axis 2.28787963 
    7900  
    7901 
    7902 > select add #39
    7903 
    7904 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    7905 
    7906 > select subtract #38
    7907 
    7908 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7909 
    7910 > view matrix models
    7911 > #39,0.93679,0.34915,0.022882,-76.412,-0.34379,0.93062,-0.12551,29.436,-0.065117,0.10971,0.99183,-11.845
    7912 
    7913 > fitmap sel inMap #8
    7914 
    7915 Fit molecule combination (#39) to map postprocess_masked330_onepf.mrc (#8)
    7916 using 2584 atoms 
    7917 average map value = 0.007829, steps = 124 
    7918 shifted from previous position = 8.29 
    7919 rotated from previous position = 9.76 degrees 
    7920 atoms outside contour = 1941, contour level = 0.013465 
    7921  
    7922 Position of combination (#39) relative to postprocess_masked330_onepf.mrc (#8)
    7923 coordinates: 
    7924 Matrix rotation and translation 
    7925 0.92112012 0.37937149 -0.08726396 -49.48445736 
    7926 -0.38893321 0.88744273 -0.24733855 71.59344644 
    7927 -0.01639143 0.26176837 0.96499152 -50.10926578 
    7928 Axis 0.55074648 -0.07666915 -0.83114389 
    7929 Axis point 136.14922419 171.67506745 0.00000000 
    7930 Rotation angle (degrees) 27.52897768 
    7931 Shift along axis 8.90561058 
    7932  
    7933 
    7934 > combine #13,14,15,17,18
    7935 
    7936 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    7937 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    7938 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    7939 
    7940 > color #40 #0096ffff
    7941 
    7942 > color #40 #0433ffff
    7943 
    7944 > select add #40
    7945 
    7946 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    7947 
    7948 > select subtract #39
    7949 
    7950 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    7951 
    7952 > view matrix models
    7953 > #40,0.93679,0.34915,0.022882,-63.113,-0.34379,0.93062,-0.12551,123.4,-0.065117,0.10971,0.99183,-9.1624
    7954 
    7955 > fitmap sel inMap #8
    7956 
    7957 Fit molecule combination (#40) to map postprocess_masked330_onepf.mrc (#8)
    7958 using 2584 atoms 
    7959 average map value = 0.01033, steps = 108 
    7960 shifted from previous position = 9.5 
    7961 rotated from previous position = 8.75 degrees 
    7962 atoms outside contour = 1773, contour level = 0.013465 
    7963  
    7964 Position of combination (#40) relative to postprocess_masked330_onepf.mrc (#8)
    7965 coordinates: 
    7966 Matrix rotation and translation 
    7967 0.97293927 0.21693771 0.07954376 -60.18334966 
    7968 -0.21037641 0.97406339 -0.08332031 80.49147095 
    7969 -0.09555598 0.06433147 0.99334310 3.83664779 
    7970 Axis 0.30454457 0.36115837 -0.88137236 
    7971 Axis point 329.42907006 328.84754176 0.00000000 
    7972 Rotation angle (degrees) 14.02906448 
    7973 Shift along axis 7.36014107 
    7974  
    7975 
    7976 > view matrix models
    7977 > #40,0.97287,0.21696,0.080382,-52.002,-0.21034,0.97407,-0.083382,78.728,-0.096388,0.064212,0.99327,4.8304
    7978 
    7979 > view matrix models
    7980 > #40,0.97287,0.21696,0.080382,-52.044,-0.21034,0.97407,-0.083382,78.716,-0.096388,0.064212,0.99327,5.4916
    7981 
    7982 > view matrix models
    7983 > #40,0.97287,0.21696,0.080382,-51.753,-0.21034,0.97407,-0.083382,79.391,-0.096388,0.064212,0.99327,4.9224
    7984 
    7985 > view matrix models
    7986 > #40,0.97287,0.21696,0.080382,-51.756,-0.21034,0.97407,-0.083382,79.236,-0.096388,0.064212,0.99327,4.9567
    7987 
    7988 > view matrix models
    7989 > #40,0.97287,0.21696,0.080382,-51.796,-0.21034,0.97407,-0.083382,79.256,-0.096388,0.064212,0.99327,5.0225
    7990 
    7991 > view matrix models
    7992 > #40,0.97287,0.21696,0.080382,-50.784,-0.21034,0.97407,-0.083382,78.956,-0.096388,0.064212,0.99327,4.0891
    7993 
    7994 > view matrix models
    7995 > #40,0.97287,0.21696,0.080382,-50.014,-0.21034,0.97407,-0.083382,78.606,-0.096388,0.064212,0.99327,4.058
    7996 
    7997 > view matrix models
    7998 > #40,0.97287,0.21696,0.080382,-50.709,-0.21034,0.97407,-0.083382,77.569,-0.096388,0.064212,0.99327,3.6748
    7999 
    8000 > view matrix models
    8001 > #40,0.97287,0.21696,0.080382,-51.056,-0.21034,0.97407,-0.083382,77.401,-0.096388,0.064212,0.99327,5.4984
    8002 
    8003 > hide #!36 models
    8004 
    8005 > hide #!37 models
    8006 
    8007 > hide #!38 models
    8008 
    8009 > show #!38 models
    8010 
    8011 > color #38 #ff2f92ff
    8012 
    8013 > show #!37 models
    8014 
    8015 > hide #!37 models
    8016 
    8017 > show #!37 models
    8018 
    8019 > hide #!40 models
    8020 
    8021 > hide #!39 models
    8022 
    8023 > hide #!38 models
    8024 
    8025 > hide #!37 models
    8026 
    8027 > show #!13 models
    8028 
    8029 > show #!14 models
    8030 
    8031 > show #!15 models
    8032 
    8033 > show #!17 models
    8034 
    8035 > show #!18 models
    8036 
    8037 > select add #13
    8038 
    8039 2680 atoms, 2677 bonds, 4 pseudobonds, 174 residues, 4 models selected 
    8040 
    8041 > select subtract #13
    8042 
    8043 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8044 
    8045 > select add #14
    8046 
    8047 3035 atoms, 3032 bonds, 4 pseudobonds, 195 residues, 4 models selected 
    8048 
    8049 > ui mousemode right "rotate selected models"
    8050 
    8051 > view matrix models
    8052 > #14,0.93636,0.14269,-0.32072,43.254,-0.01992,0.93378,0.35729,-78.293,0.35047,-0.32816,0.8772,28.341,#40,0.98399,-0.16665,0.063238,16.233,0.17553,0.96765,-0.1812,21.392,-0.030994,0.1894,0.98141,-26.686
    8053 
    8054 > ui mousemode right "translate selected models"
    8055 
    8056 > view matrix models
    8057 > #14,0.93636,0.14269,-0.32072,49.559,-0.01992,0.93378,0.35729,-82.704,0.35047,-0.32816,0.8772,25.475,#40,0.98399,-0.16665,0.063238,22.538,0.17553,0.96765,-0.1812,16.981,-0.030994,0.1894,0.98141,-29.551
    8058 
    8059 > ui mousemode right "rotate selected models"
    8060 
    8061 > view matrix models
    8062 > #14,0.93867,0.26555,-0.21998,3.4025,-0.15307,0.89251,0.42426,-60.704,0.30899,-0.36456,0.87842,41.152,#40,0.9965,-0.0094951,0.083093,-10.946,0.023032,0.98627,-0.1635,40.487,-0.0804,0.16484,0.98304,-15.853
    8063 
    8064 > ui mousemode right "translate selected models"
    8065 
    8066 > view matrix models
    8067 > #14,0.93867,0.26555,-0.21998,0.26406,-0.15307,0.89251,0.42426,-59.365,0.30899,-0.36456,0.87842,42.17,#40,0.9965,-0.0094951,0.083093,-14.085,0.023032,0.98627,-0.1635,41.827,-0.0804,0.16484,0.98304,-14.835
    8068 
    8069 > show #!36 models
    8070 
    8071 > hide #!36 models
    8072 
    8073 > show #!37 models
    8074 
    8075 > hide #!37 models
    8076 
    8077 > show #!38 models
    8078 
    8079 > hide #!38 models
    8080 
    8081 > show #!38 models
    8082 
    8083 > show #!39 models
    8084 
    8085 > show #!40 models
    8086 
    8087 > show #!37 models
    8088 
    8089 > hide #!40 models
    8090 
    8091 > hide #!39 models
    8092 
    8093 > hide #!38 models
    8094 
    8095 > hide #!37 models
    8096 
    8097 > select subtract #40
    8098 
    8099 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    8100 
    8101 > select add #40
    8102 
    8103 3035 atoms, 3032 bonds, 4 pseudobonds, 195 residues, 4 models selected 
    8104 
    8105 > select subtract #40
    8106 
    8107 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    8108 
    8109 > hide #!11-19 target m
    8110 
    8111 > hide #!8 models
    8112 
    8113 > show #!9 models
    8114 
    8115 > hide #!9 models
    8116 
    8117 > show #!24 models
    8118 
    8119 > show #!25 models
    8120 
    8121 > hide #!25 models
    8122 
    8123 > hide #!24 models
    8124 
    8125 > show #!13 models
    8126 
    8127 > show #!14 models
    8128 
    8129 > show #!15 models
    8130 
    8131 > show #!17 models
    8132 
    8133 > show #!18 models
    8134 
    8135 > combine #13,14,15,17,18
    8136 
    8137 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8138 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8139 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8140 
    8141 > combine #13,14,15,17,18
    8142 
    8143 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8144 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8145 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8146 
    8147 > combine #13,14,15,17,18
    8148 
    8149 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8150 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8151 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8152 
    8153 > combine #13,14,15,17,18
    8154 
    8155 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8156 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8157 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8158 
    8159 > close #44
    8160 
    8161 > color #41 #00f900ff
    8162 
    8163 > hide #!42 models
    8164 
    8165 > show #!42 models
    8166 
    8167 > color #42 #fffc79ff
    8168 
    8169 > color #43 #ff8ad8ff
    8170 
    8171 > select subtract #14
    8172 
    8173 Nothing selected 
    8174 
    8175 > show #!8 models
    8176 
    8177 > select add #41
    8178 
    8179 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8180 
    8181 > view matrix models
    8182 > #41,0.93679,0.34915,0.022882,-62.198,-0.34379,0.93062,-0.12551,100.29,-0.065117,0.10971,0.99183,-8.9707
    8183 
    8184 > fitmap sel inMap #8
    8185 
    8186 Fit molecule combination (#41) to map postprocess_masked330_onepf.mrc (#8)
    8187 using 2584 atoms 
    8188 average map value = 0.0132, steps = 92 
    8189 shifted from previous position = 3.42 
    8190 rotated from previous position = 8.25 degrees 
    8191 atoms outside contour = 1501, contour level = 0.013465 
    8192  
    8193 Position of combination (#41) relative to postprocess_masked330_onepf.mrc (#8)
    8194 coordinates: 
    8195 Matrix rotation and translation 
    8196 0.97635364 0.21617287 0.00169326 -37.13601339 
    8197 -0.21327494 0.96448556 -0.15582492 73.25731020 
    8198 -0.03531825 0.15177909 0.98778324 -26.43547376 
    8199 Axis 0.58088610 0.06989334 -0.81097858 
    8200 Axis point 305.45192334 218.60154493 0.00000000 
    8201 Rotation angle (degrees) 15.35336768 
    8202 Shift along axis 4.98700712 
    8203  
    8204 
    8205 > select add #42
    8206 
    8207 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    8208 
    8209 > select subtract #41
    8210 
    8211 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8212 
    8213 > view matrix models
    8214 > #42,0.93679,0.34915,0.022882,-71.442,-0.34379,0.93062,-0.12551,50.689,-0.065117,0.10971,0.99183,-14.086
    8215 
    8216 > fitmap sel inMap #8
    8217 
    8218 Fit molecule combination (#42) to map postprocess_masked330_onepf.mrc (#8)
    8219 using 2584 atoms 
    8220 average map value = 0.0108, steps = 108 
    8221 shifted from previous position = 7.03 
    8222 rotated from previous position = 7.88 degrees 
    8223 atoms outside contour = 1670, contour level = 0.013465 
    8224  
    8225 Position of combination (#42) relative to postprocess_masked330_onepf.mrc (#8)
    8226 coordinates: 
    8227 Matrix rotation and translation 
    8228 0.94102440 0.33473095 -0.04927756 -48.54200188 
    8229 -0.33647530 0.91059776 -0.23999186 80.39429404 
    8230 -0.03546067 0.24241888 0.96952340 -42.85277972 
    8231 Axis 0.58353957 -0.01671335 -0.81191270 
    8232 Axis point 189.41356021 187.32114179 0.00000000 
    8233 Rotation angle (degrees) 24.41537437 
    8234 Shift along axis 5.12287935 
    8235  
    8236 
    8237 > select add #43
    8238 
    8239 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    8240 
    8241 > select subtract #42
    8242 
    8243 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8244 
    8245 > view matrix models
    8246 > #43,0.93679,0.34915,0.022882,-75.923,-0.34379,0.93062,-0.12551,29.386,-0.065117,0.10971,0.99183,-16.303
    8247 
    8248 > fitmap sel inMap #8
    8249 
    8250 Fit molecule combination (#43) to map postprocess_masked330_onepf.mrc (#8)
    8251 using 2584 atoms 
    8252 average map value = 0.007662, steps = 132 
    8253 shifted from previous position = 9.08 
    8254 rotated from previous position = 8.87 degrees 
    8255 atoms outside contour = 1947, contour level = 0.013465 
    8256  
    8257 Position of combination (#43) relative to postprocess_masked330_onepf.mrc (#8)
    8258 coordinates: 
    8259 Matrix rotation and translation 
    8260 0.91401014 0.39897511 -0.07351416 -55.80544839 
    8261 -0.40480024 0.88490039 -0.23040846 72.00192839 
    8262 -0.02687453 0.24035422 0.97031315 -43.99953293 
    8263 Axis 0.50475479 -0.05000731 -0.86181313 
    8264 Axis point 128.75632904 175.40386142 0.00000000 
    8265 Rotation angle (degrees) 27.79620799 
    8266 Shift along axis 6.15068475 
    8267  
    8268 
    8269 > close #41-43
    8270 
    8271 > select add #14
    8272 
    8273 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    8274 
    8275 > select subtract #14
    8276 
    8277 Nothing selected 
    8278 
    8279 > select add #15
    8280 
    8281 450 atoms, 449 bonds, 30 residues, 1 model selected 
    8282 
    8283 > ui mousemode right "translate selected models"
    8284 
    8285 > view matrix models
    8286 > #15,0.92903,0.12514,-0.34819,60.8,-0.17284,0.97886,-0.10936,64.279,0.32714,0.16178,0.93102,-80.513
    8287 
    8288 > view matrix models
    8289 > #15,0.92903,0.12514,-0.34819,60.594,-0.17284,0.97886,-0.10936,65.221,0.32714,0.16178,0.93102,-80.761
    8290 
    8291 > view matrix models
    8292 > #15,0.92903,0.12514,-0.34819,60.478,-0.17284,0.97886,-0.10936,64.823,0.32714,0.16178,0.93102,-80.684
    8293 
    8294 > select add #14
    8295 
    8296 901 atoms, 899 bonds, 1 pseudobond, 59 residues, 3 models selected 
    8297 
    8298 > select subtract #15
    8299 
    8300 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    8301 
    8302 > view matrix models
    8303 > #14,0.93867,0.26555,-0.21998,1.3452,-0.15307,0.89251,0.42426,-59.615,0.30899,-0.36456,0.87842,42.024
    8304 
    8305 > view matrix models
    8306 > #14,0.93867,0.26555,-0.21998,3.0244,-0.15307,0.89251,0.42426,-60.011,0.30899,-0.36456,0.87842,42.009
    8307 
    8308 > view matrix models
    8309 > #14,0.93867,0.26555,-0.21998,2.1975,-0.15307,0.89251,0.42426,-59.284,0.30899,-0.36456,0.87842,42.688
    8310 
    8311 > view matrix models
    8312 > #14,0.93867,0.26555,-0.21998,2.6663,-0.15307,0.89251,0.42426,-59,0.30899,-0.36456,0.87842,43.865
    8313 
    8314 > view matrix models
    8315 > #14,0.93867,0.26555,-0.21998,1.3142,-0.15307,0.89251,0.42426,-59.117,0.30899,-0.36456,0.87842,43.944
    8316 
    8317 > view matrix models
    8318 > #14,0.93867,0.26555,-0.21998,0.52128,-0.15307,0.89251,0.42426,-58.855,0.30899,-0.36456,0.87842,43.521
    8319 
    8320 > ui mousemode right "rotate selected models"
    8321 
    8322 > view matrix models
    8323 > #14,0.93759,0.19788,-0.28596,27.913,-0.13627,0.96561,0.22141,-39.057,0.31994,-0.16863,0.93231,-11.081
    8324 
    8325 > ui mousemode right "rotate selected models"
    8326 
    8327 > ui mousemode right "translate selected models"
    8328 
    8329 > view matrix models
    8330 > #14,0.93759,0.19788,-0.28596,27.706,-0.13627,0.96561,0.22141,-45.169,0.31994,-0.16863,0.93231,-13.652
    8331 
    8332 > view matrix models
    8333 > #14,0.93759,0.19788,-0.28596,28.722,-0.13627,0.96561,0.22141,-40.786,0.31994,-0.16863,0.93231,-12.696
    8334 
    8335 > view matrix models
    8336 > #14,0.93759,0.19788,-0.28596,29.073,-0.13627,0.96561,0.22141,-41.349,0.31994,-0.16863,0.93231,-12.85
    8337 
    8338 > view matrix models
    8339 > #14,0.93759,0.19788,-0.28596,28.038,-0.13627,0.96561,0.22141,-40.917,0.31994,-0.16863,0.93231,-13.236
    8340 
    8341 > view matrix models
    8342 > #14,0.93759,0.19788,-0.28596,28.997,-0.13627,0.96561,0.22141,-41.359,0.31994,-0.16863,0.93231,-13.385
    8343 
    8344 > view matrix models
    8345 > #14,0.93759,0.19788,-0.28596,30.25,-0.13627,0.96561,0.22141,-40.769,0.31994,-0.16863,0.93231,-13.408
    8346 
    8347 > view matrix models
    8348 > #14,0.93759,0.19788,-0.28596,29.938,-0.13627,0.96561,0.22141,-40.65,0.31994,-0.16863,0.93231,-13.487
    8349 
    8350 > view matrix models
    8351 > #14,0.93759,0.19788,-0.28596,29.46,-0.13627,0.96561,0.22141,-41.115,0.31994,-0.16863,0.93231,-13.567
    8352 
    8353 > view matrix models
    8354 > #14,0.93759,0.19788,-0.28596,28.678,-0.13627,0.96561,0.22141,-42.709,0.31994,-0.16863,0.93231,-13.582
    8355 
    8356 > view matrix models
    8357 > #14,0.93759,0.19788,-0.28596,28.866,-0.13627,0.96561,0.22141,-43.529,0.31994,-0.16863,0.93231,-13.784
    8358 
    8359 > view matrix models
    8360 > #14,0.93759,0.19788,-0.28596,27.831,-0.13627,0.96561,0.22141,-42.587,0.31994,-0.16863,0.93231,-14.107
    8361 
    8362 > select add #13
    8363 
    8364 547 atoms, 545 bonds, 2 pseudobonds, 37 residues, 4 models selected 
    8365 
    8366 > select subtract #14
    8367 
    8368 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    8369 
    8370 > view matrix models
    8371 > #13,0.93679,0.34915,0.022882,-66.485,-0.34379,0.93062,-0.12551,77.151,-0.065117,0.10971,0.99183,-11.256
    8372 
    8373 > view matrix models
    8374 > #13,0.93679,0.34915,0.022882,-66.793,-0.34379,0.93062,-0.12551,76.01,-0.065117,0.10971,0.99183,-11.236
    8375 
    8376 > view matrix models
    8377 > #13,0.93679,0.34915,0.022882,-66.996,-0.34379,0.93062,-0.12551,76.439,-0.065117,0.10971,0.99183,-11.297
    8378 
    8379 > select add #14
    8380 
    8381 547 atoms, 545 bonds, 2 pseudobonds, 37 residues, 4 models selected 
    8382 
    8383 > select subtract #13
    8384 
    8385 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    8386 
    8387 > ui mousemode right "move picked models"
    8388 
    8389 > ui mousemode right "rotate selected models"
    8390 
    8391 > view matrix models
    8392 > #14,0.95778,0.18403,-0.22087,14.429,-0.14413,0.97212,0.18497,-35.485,0.24875,-0.14533,0.9576,-10.095
    8393 
    8394 > view matrix models
    8395 > #14,0.96305,0.11146,-0.24516,33.665,-0.075377,0.98551,0.15194,-45.437,0.25854,-0.12784,0.9575,-15.745
    8396 
    8397 > ui mousemode right "translate selected models"
    8398 
    8399 > view matrix models
    8400 > #14,0.96305,0.11146,-0.24516,35.589,-0.075377,0.98551,0.15194,-43.952,0.25854,-0.12784,0.9575,-15.917
    8401 
    8402 > view matrix models
    8403 > #14,0.96305,0.11146,-0.24516,35.461,-0.075377,0.98551,0.15194,-44.173,0.25854,-0.12784,0.9575,-15.949
    8404 
    8405 > view matrix models
    8406 > #14,0.96305,0.11146,-0.24516,36.095,-0.075377,0.98551,0.15194,-44.379,0.25854,-0.12784,0.9575,-15.979
    8407 
    8408 > select subtract #14
    8409 
    8410 Nothing selected 
    8411 
    8412 > combine #13,14,15,17,18
    8413 
    8414 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8415 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8416 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8417 
    8418 > combine #13,14,15,17,18
    8419 
    8420 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8421 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8422 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8423 
    8424 > combine #13,14,15,17,18
    8425 
    8426 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8427 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8428 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8429 
    8430 > color #42 #9437ffff
    8431 
    8432 > color #43 #00fa92ff
    8433 
    8434 > select add #42
    8435 
    8436 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8437 
    8438 > hide #!41 models
    8439 
    8440 > show #!41 models
    8441 
    8442 > color #41 #fffc79ff
    8443 
    8444 > select add #41
    8445 
    8446 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    8447 
    8448 > select subtract #42
    8449 
    8450 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8451 
    8452 > ui mousemode right "rotate selected models"
    8453 
    8454 > ui mousemode right "translate selected models"
    8455 
    8456 > view matrix models
    8457 > #41,0.93679,0.34915,0.022882,-72.632,-0.34379,0.93062,-0.12551,56.409,-0.065117,0.10971,0.99183,-18.56
    8458 
    8459 > fitmap sel inMap #8
    8460 
    8461 Fit molecule combination (#41) to map postprocess_masked330_onepf.mrc (#8)
    8462 using 2584 atoms 
    8463 average map value = 0.01078, steps = 88 
    8464 shifted from previous position = 9.48 
    8465 rotated from previous position = 3.59 degrees 
    8466 atoms outside contour = 1690, contour level = 0.013465 
    8467  
    8468 Position of combination (#41) relative to postprocess_masked330_onepf.mrc (#8)
    8469 coordinates: 
    8470 Matrix rotation and translation 
    8471 0.92303332 0.38374078 -0.02743178 -63.08528755 
    8472 -0.38379562 0.91353179 -0.13476122 66.08089993 
    8473 -0.02665357 0.13491730 0.99049831 -24.47307825 
    8474 Axis 0.33148975 -0.00095658 -0.94345834 
    8475 Axis point 128.90816303 192.07676309 0.00000000 
    8476 Rotation angle (degrees) 24.00193621 
    8477 Shift along axis 2.11399159 
    8478  
    8479 
    8480 > select add #42
    8481 
    8482 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    8483 
    8484 > select subtract #41
    8485 
    8486 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8487 
    8488 > view matrix models
    8489 > #42,0.93679,0.34915,0.022882,-63.754,-0.34379,0.93062,-0.12551,98.568,-0.065117,0.10971,0.99183,-3.4276
    8490 
    8491 > fitmap sel inMap #8
    8492 
    8493 Fit molecule combination (#42) to map postprocess_masked330_onepf.mrc (#8)
    8494 using 2584 atoms 
    8495 average map value = 0.01414, steps = 96 
    8496 shifted from previous position = 8.38 
    8497 rotated from previous position = 5.54 degrees 
    8498 atoms outside contour = 1445, contour level = 0.013465 
    8499  
    8500 Position of combination (#42) relative to postprocess_masked330_onepf.mrc (#8)
    8501 coordinates: 
    8502 Matrix rotation and translation 
    8503 0.95266112 0.30219187 0.03341952 -60.73601760 
    8504 -0.30075358 0.95277521 -0.04203195 68.40598395 
    8505 -0.04454301 0.02999116 0.99855718 1.50546276 
    8506 Axis 0.11764325 0.12734477 -0.98485703 
    8507 Axis point 191.14749839 230.96096083 0.00000000 
    8508 Rotation angle (degrees) 17.82484289 
    8509 Shift along axis 0.08329611 
    8510  
    8511 
    8512 > select add #43
    8513 
    8514 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    8515 
    8516 > select subtract #42
    8517 
    8518 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8519 
    8520 > view matrix models
    8521 > #43,0.93679,0.34915,0.022882,-75.62,-0.34379,0.93062,-0.12551,32.493,-0.065117,0.10971,0.99183,-27.039
    8522 
    8523 > fitmap sel inMap #8
    8524 
    8525 Fit molecule combination (#43) to map postprocess_masked330_onepf.mrc (#8)
    8526 using 2584 atoms 
    8527 average map value = 0.007706, steps = 232 
    8528 shifted from previous position = 17.6 
    8529 rotated from previous position = 9.01 degrees 
    8530 atoms outside contour = 1932, contour level = 0.013465 
    8531  
    8532 Position of combination (#43) relative to postprocess_masked330_onepf.mrc (#8)
    8533 coordinates: 
    8534 Matrix rotation and translation 
    8535 0.90367188 0.41801744 -0.09294380 -56.27241034 
    8536 -0.42822555 0.88216661 -0.19597183 69.11024602 
    8537 0.00007228 0.21689514 0.97619490 -45.72291437 
    8538 Axis 0.43635585 -0.09830797 -0.89438756 
    8539 Axis point 116.41312842 171.40753366 0.00000000 
    8540 Rotation angle (degrees) 28.23474883 
    8541 Shift along axis 9.54512234 
    8542  
    8543 
    8544 > hide #!41-43 target m
    8545 
    8546 > select add #14
    8547 
    8548 3035 atoms, 3032 bonds, 4 pseudobonds, 195 residues, 4 models selected 
    8549 
    8550 > ui mousemode right "rotate selected models"
    8551 
    8552 > select subtract #43
    8553 
    8554 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    8555 
    8556 > view matrix models
    8557 > #14,0.96007,0.18841,-0.20679,12.779,-0.12457,0.9498,0.287,-52.948,0.25048,-0.24978,0.93534,16.067
    8558 
    8559 > ui mousemode right "translate selected models"
    8560 
    8561 > view matrix models
    8562 > #14,0.96007,0.18841,-0.20679,11.458,-0.12457,0.9498,0.287,-52.611,0.25048,-0.24978,0.93534,18.09
    8563 
    8564 > view matrix models
    8565 > #14,0.96007,0.18841,-0.20679,11.328,-0.12457,0.9498,0.287,-53.157,0.25048,-0.24978,0.93534,18.06
    8566 
    8567 > ui mousemode right "rotate selected models"
    8568 
    8569 > view matrix models
    8570 > #14,0.96066,0.21122,-0.18035,1.2461,-0.1416,0.93107,0.33623,-55.23,0.23894,-0.29747,0.92435,32.673
    8571 
    8572 > ui mousemode right "translate selected models"
    8573 
    8574 [Repeated 1 time(s)]
    8575 
    8576 > view matrix models
    8577 > #14,0.96066,0.21122,-0.18035,1.0403,-0.1416,0.93107,0.33623,-55.063,0.23894,-0.29747,0.92435,33.263
    8578 
    8579 > combine #13,14,15,17,18
    8580 
    8581 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8582 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8583 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8584 
    8585 > combine #13,14,15,17,18
    8586 
    8587 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8588 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8589 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8590 
    8591 > combine #13,14,15,17,18
    8592 
    8593 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8594 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8595 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8596 
    8597 > color #44 #00fa92ff
    8598 
    8599 > color #45 #73fcd6ff
    8600 
    8601 > color #46 #ff85ffff
    8602 
    8603 > select add #44
    8604 
    8605 3035 atoms, 3032 bonds, 4 pseudobonds, 195 residues, 4 models selected 
    8606 
    8607 > select subtract #14
    8608 
    8609 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8610 
    8611 > view matrix models
    8612 > #44,0.93679,0.34915,0.022882,-62.806,-0.34379,0.93062,-0.12551,100.45,-0.065117,0.10971,0.99183,-9.2676
    8613 
    8614 > fitmap sel inMap #8
    8615 
    8616 Fit molecule combination (#44) to map postprocess_masked330_onepf.mrc (#8)
    8617 using 2584 atoms 
    8618 average map value = 0.01377, steps = 84 
    8619 shifted from previous position = 4.5 
    8620 rotated from previous position = 7.2 degrees 
    8621 atoms outside contour = 1465, contour level = 0.013465 
    8622  
    8623 Position of combination (#44) relative to postprocess_masked330_onepf.mrc (#8)
    8624 coordinates: 
    8625 Matrix rotation and translation 
    8626 0.97204928 0.23451988 -0.01098294 -39.72571306 
    8627 -0.23366931 0.96186561 -0.14217314 73.69126171 
    8628 -0.02277832 0.14076568 0.98978087 -27.26626432 
    8629 Axis 0.51709523 0.02155709 -0.85565636 
    8630 Axis point 280.29055946 212.44867055 -0.00000000 
    8631 Rotation angle (degrees) 15.87769676 
    8632 Shift along axis 4.37714484 
    8633  
    8634 
    8635 > select add #45
    8636 
    8637 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    8638 
    8639 > view matrix models
    8640 > #44,0.97204,0.23461,-0.010146,-46.808,-0.23364,0.96186,-0.14224,47.633,-0.023611,0.14063,0.98978,-28.52,#45,0.93679,0.34915,0.022882,-73.764,-0.34379,0.93062,-0.12551,50.392,-0.065117,0.10971,0.99183,-12.761
    8641 
    8642 > undo
    8643 
    8644 > select subtract #44
    8645 
    8646 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8647 
    8648 > view matrix models
    8649 > #45,0.93679,0.34915,0.022882,-73.717,-0.34379,0.93062,-0.12551,51.556,-0.065117,0.10971,0.99183,-12.611
    8650 
    8651 > fitmap sel inMap #8
    8652 
    8653 Fit molecule combination (#45) to map postprocess_masked330_onepf.mrc (#8)
    8654 using 2584 atoms 
    8655 average map value = 0.01112, steps = 92 
    8656 shifted from previous position = 6.11 
    8657 rotated from previous position = 7.15 degrees 
    8658 atoms outside contour = 1639, contour level = 0.013465 
    8659  
    8660 Position of combination (#45) relative to postprocess_masked330_onepf.mrc (#8)
    8661 coordinates: 
    8662 Matrix rotation and translation 
    8663 0.93504097 0.34772683 -0.06916959 -48.12545350 
    8664 -0.35440914 0.91144207 -0.20896772 76.23900516 
    8665 -0.00961961 0.21990771 0.97547325 -44.74578176 
    8666 Axis 0.51990621 -0.07218973 -0.85116754 
    8667 Axis point 171.25422569 181.69828587 0.00000000 
    8668 Rotation angle (degrees) 24.35912373 
    8669 Shift along axis 7.56176192 
    8670  
    8671 
    8672 > select add #46
    8673 
    8674 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    8675 
    8676 > select subtract #45
    8677 
    8678 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8679 
    8680 > view matrix models
    8681 > #46,0.93679,0.34915,0.022882,-78.879,-0.34379,0.93062,-0.12551,28.916,-0.065117,0.10971,0.99183,-14.122
    8682 
    8683 > fitmap sel inMap #8
    8684 
    8685 Fit molecule combination (#46) to map postprocess_masked330_onepf.mrc (#8)
    8686 using 2584 atoms 
    8687 average map value = 0.007906, steps = 136 
    8688 shifted from previous position = 9.01 
    8689 rotated from previous position = 8.8 degrees 
    8690 atoms outside contour = 1911, contour level = 0.013465 
    8691  
    8692 Position of combination (#46) relative to postprocess_masked330_onepf.mrc (#8)
    8693 coordinates: 
    8694 Matrix rotation and translation 
    8695 0.90681352 0.41131768 -0.09223340 -55.32496436 
    8696 -0.42153165 0.88512519 -0.19714072 67.26696276 
    8697 0.00055064 0.21764917 0.97602691 -45.92741365 
    8698 Axis 0.44360715 -0.09923016 -0.89071099 
    8699 Axis point 115.24010580 171.06631423 -0.00000000 
    8700 Rotation angle (degrees) 27.87339513 
    8701 Shift along axis 9.69059100 
    8702  
    8703 
    8704 > hide #!44-46 target m
    8705 
    8706 > select add #14
    8707 
    8708 3035 atoms, 3032 bonds, 4 pseudobonds, 195 residues, 4 models selected 
    8709 
    8710 > ui mousemode right "rotate selected models"
    8711 
    8712 > view matrix models
    8713 > #14,0.95352,0.27498,-0.12321,-22.22,-0.17441,0.8371,0.5185,-63.317,0.24571,-0.47292,0.84615,84.656,#46,0.86993,0.48738,-0.075381,-71.509,-0.48885,0.87237,-0.0011636,46.247,0.065193,0.037862,0.99715,-15.237
    8714 
    8715 > view matrix models
    8716 > #14,0.95554,0.26025,-0.13864,-16.489,-0.16642,0.8641,0.47501,-62.363,0.24342,-0.43082,0.86899,71.674,#46,0.87948,0.46901,-0.080928,-67.474,-0.47356,0.87933,-0.05017,50.805,0.047632,0.082447,0.99546,-23.226
    8717 
    8718 > ui mousemode right "translate selected models"
    8719 
    8720 > view matrix models
    8721 > #14,0.95554,0.26025,-0.13864,-17.476,-0.16642,0.8641,0.47501,-61.263,0.24342,-0.43082,0.86899,74.285,#46,0.87948,0.46901,-0.080928,-68.461,-0.47356,0.87933,-0.05017,51.904,0.047632,0.082447,0.99546,-20.615
    8722 
    8723 > ui mousemode right "rotate selected models"
    8724 
    8725 > view matrix models
    8726 > #14,0.89918,0.34155,-0.27354,1.8076,-0.19749,0.87458,0.44283,-51.314,0.39048,-0.34416,0.85386,29.894,#46,0.8519,0.46244,-0.24579,-30.953,-0.49475,0.86455,-0.088161,66.682,0.17173,0.19671,0.96531,-67.143
    8727 
    8728 > view matrix models
    8729 > #14,0.87016,0.44245,-0.21693,-25.083,-0.28023,0.80643,0.52072,-35.433,0.40533,-0.39232,0.82571,42.75,#46,0.78733,0.56253,-0.25233,-43.785,-0.58186,0.81328,-0.0024901,79.83,0.20382,0.14878,0.96764,-61.063
    8730 
    8731 > ui mousemode right "translate selected models"
    8732 
    8733 > view matrix models
    8734 > #14,0.87016,0.44245,-0.21693,-26.836,-0.28023,0.80643,0.52072,-34.315,0.40533,-0.39232,0.82571,43.587,#46,0.78733,0.56253,-0.25233,-45.538,-0.58186,0.81328,-0.0024901,80.948,0.20382,0.14878,0.96764,-60.225
    8735 
    8736 > view matrix models
    8737 > #14,0.87016,0.44245,-0.21693,-26.765,-0.28023,0.80643,0.52072,-33.623,0.40533,-0.39232,0.82571,42.738,#46,0.78733,0.56253,-0.25233,-45.467,-0.58186,0.81328,-0.0024901,81.64,0.20382,0.14878,0.96764,-61.074
    8738 
    8739 > view matrix models
    8740 > #14,0.87016,0.44245,-0.21693,-27,-0.28023,0.80643,0.52072,-33.997,0.40533,-0.39232,0.82571,42.778,#46,0.78733,0.56253,-0.25233,-45.701,-0.58186,0.81328,-0.0024901,81.266,0.20382,0.14878,0.96764,-61.035
    8741 
    8742 > view matrix models
    8743 > #14,0.87016,0.44245,-0.21693,-26.29,-0.28023,0.80643,0.52072,-34.517,0.40533,-0.39232,0.82571,41.933,#46,0.78733,0.56253,-0.25233,-44.991,-0.58186,0.81328,-0.0024901,80.746,0.20382,0.14878,0.96764,-61.879
    8744 
    8745 > view matrix models
    8746 > #14,0.87016,0.44245,-0.21693,-27.004,-0.28023,0.80643,0.52072,-34.864,0.40533,-0.39232,0.82571,42.41,#46,0.78733,0.56253,-0.25233,-45.706,-0.58186,0.81328,-0.0024901,80.399,0.20382,0.14878,0.96764,-61.402
    8747 
    8748 > view matrix models
    8749 > #14,0.87016,0.44245,-0.21693,-27.593,-0.28023,0.80643,0.52072,-34.076,0.40533,-0.39232,0.82571,42.086,#46,0.78733,0.56253,-0.25233,-46.294,-0.58186,0.81328,-0.0024901,81.187,0.20382,0.14878,0.96764,-61.727
    8750 
    8751 > select subtract #14
    8752 
    8753 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8754 
    8755 > select add #15
    8756 
    8757 3034 atoms, 3031 bonds, 3 pseudobonds, 196 residues, 3 models selected 
    8758 
    8759 > ui mousemode right "rotate selected models"
    8760 
    8761 > view matrix models
    8762 > #15,0.93792,0.029309,-0.34562,78.109,-0.13901,0.94466,-0.29713,102.43,0.31779,0.32673,0.89009,-104.97,#46,0.83724,0.48064,-0.2608,-29.927,-0.53259,0.82487,-0.18959,105.4,0.124,0.29763,0.94659,-86.343
    8763 
    8764 > view matrix models
    8765 > #15,0.95255,0.04479,-0.30106,63.321,-0.11879,0.96538,-0.23223,81.485,0.28024,0.25698,0.92489,-90.204,#46,0.84269,0.49421,-0.21363,-43.665,-0.52484,0.84253,-0.1212,86.076,0.12009,0.21425,0.96937,-66.532
    8766 
    8767 > show #!23 models
    8768 
    8769 > view matrix models
    8770 > #15,0.96935,0.046326,-0.24127,48.002,-0.10474,0.96627,-0.23527,79.209,0.22223,0.25333,0.94151,-81.62,#46,0.85587,0.49406,-0.15291,-57.414,-0.51253,0.84982,-0.12294,82.298,0.069209,0.18359,0.98056,-51.53
    8771 
    8772 > view matrix models
    8773 > #15,0.94736,0.15889,-0.27796,36.141,-0.23023,0.94138,-0.24657,110.61,0.22249,0.29758,0.92841,-88.249,#46,0.78756,0.59021,-0.17722,-68.47,-0.61418,0.77525,-0.14752,124.98,0.050327,0.22503,0.97305,-58.625
    8774 
    8775 > view matrix models
    8776 > #15,0.95537,0.13724,-0.26161,35.868,-0.21592,0.92877,-0.30126,121.26,0.20163,0.3443,0.91695,-91.67,#46,0.8039,0.57198,-0.16305,-68.766,-0.59466,0.7782,-0.20198,131.29,0.011355,0.25933,0.96572,-60.387
    8777 
    8778 > ui mousemode right "translate selected models"
    8779 
    8780 > view matrix models
    8781 > #15,0.95537,0.13724,-0.26161,37.478,-0.21592,0.92877,-0.30126,121.45,0.20163,0.3443,0.91695,-90.263,#46,0.8039,0.57198,-0.16305,-67.157,-0.59466,0.7782,-0.20198,131.47,0.011355,0.25933,0.96572,-58.981
    8782 
    8783 > view matrix models
    8784 > #15,0.95537,0.13724,-0.26161,37.897,-0.21592,0.92877,-0.30126,121.34,0.20163,0.3443,0.91695,-88.978,#46,0.8039,0.57198,-0.16305,-66.737,-0.59466,0.7782,-0.20198,131.37,0.011355,0.25933,0.96572,-57.696
    8785 
    8786 > view matrix models
    8787 > #15,0.95537,0.13724,-0.26161,37.857,-0.21592,0.92877,-0.30126,121.38,0.20163,0.3443,0.91695,-88.919,#46,0.8039,0.57198,-0.16305,-66.777,-0.59466,0.7782,-0.20198,131.41,0.011355,0.25933,0.96572,-57.637
    8788 
    8789 > ui mousemode right "rotate selected models"
    8790 
    8791 > view matrix models
    8792 > #15,0.97151,-0.16037,-0.17452,79.212,0.10079,0.94597,-0.30819,58.571,0.21452,0.28182,0.93518,-82.044,#46,0.94697,0.30115,-0.11205,-24.053,-0.31742,0.93093,-0.18057,37.981,0.049932,0.20656,0.97716,-51.387
    8793 
    8794 > view matrix models
    8795 > #15,0.97608,-0.10344,-0.19123,69.843,0.040142,0.95019,-0.30907,69.478,0.21367,0.294,0.93162,-83.701,#46,0.92649,0.35627,-0.12122,-34.421,-0.37376,0.9087,-0.18593,54.678,0.043911,0.21757,0.97506,-53.082
    8796 
    8797 > ui mousemode right "translate selected models"
    8798 
    8799 > view matrix models
    8800 > #15,0.97608,-0.10344,-0.19123,65.495,0.040142,0.95019,-0.30907,67.735,0.21367,0.294,0.93162,-84.673,#46,0.92649,0.35627,-0.12122,-38.769,-0.37376,0.9087,-0.18593,52.936,0.043911,0.21757,0.97506,-54.055
    8801 
    8802 > view matrix models
    8803 > #15,0.97608,-0.10344,-0.19123,65.14,0.040142,0.95019,-0.30907,66.653,0.21367,0.294,0.93162,-84.817,#46,0.92649,0.35627,-0.12122,-39.124,-0.37376,0.9087,-0.18593,51.853,0.043911,0.21757,0.97506,-54.199
    8804 
    8805 > ui mousemode right "rotate selected models"
    8806 
    8807 > view matrix models
    8808 > #15,0.97412,0.0047884,-0.22597,49.959,-0.050981,0.97867,-0.19903,56.513,0.22019,0.2054,0.95358,-72.056,#46,0.87804,0.45689,-0.14248,-55.341,-0.47041,0.87871,-0.081138,56.444,0.088126,0.13827,0.98647,-41.404
    8809 
    8810 > ui mousemode right "translate selected models"
    8811 
    8812 [Repeated 1 time(s)]
    8813 
    8814 > view matrix models
    8815 > #15,0.97412,0.0047884,-0.22597,52.335,-0.050981,0.97867,-0.19903,56.93,0.22019,0.2054,0.95358,-71.724,#46,0.87804,0.45689,-0.14248,-52.965,-0.47041,0.87871,-0.081138,56.86,0.088126,0.13827,0.98647,-41.072
    8816 
    8817 > view matrix models
    8818 > #15,0.97412,0.0047884,-0.22597,52.629,-0.050981,0.97867,-0.19903,57.531,0.22019,0.2054,0.95358,-72.128,#46,0.87804,0.45689,-0.14248,-52.671,-0.47041,0.87871,-0.081138,57.461,0.088126,0.13827,0.98647,-41.476
    8819 
    8820 > ui mousemode right "rotate selected models"
    8821 
    8822 > view matrix models
    8823 > #15,0.96754,0.025808,-0.2514,54.55,-0.054053,0.99289,-0.1061,36.858,0.24688,0.11624,0.96205,-60.446,#46,0.86344,0.47649,-0.1656,-51.347,-0.48132,0.87646,0.012266,42.094,0.15099,0.069117,0.98612,-32.413
    8824 
    8825 > ui mousemode right "translate selected models"
    8826 
    8827 > view matrix models
    8828 > #15,0.96754,0.025808,-0.2514,54.402,-0.054053,0.99289,-0.1061,36.344,0.24688,0.11624,0.96205,-62.77,#46,0.86344,0.47649,-0.1656,-51.496,-0.48132,0.87646,0.012266,41.579,0.15099,0.069117,0.98612,-34.737
    8829 
    8830 > view matrix models
    8831 > #15,0.96754,0.025808,-0.2514,55.05,-0.054053,0.99289,-0.1061,36.188,0.24688,0.11624,0.96205,-63.63,#46,0.86344,0.47649,-0.1656,-50.848,-0.48132,0.87646,0.012266,41.423,0.15099,0.069117,0.98612,-35.597
    8832 
    8833 > view matrix models
    8834 > #15,0.96754,0.025808,-0.2514,55.295,-0.054053,0.99289,-0.1061,36.489,0.24688,0.11624,0.96205,-63.543,#46,0.86344,0.47649,-0.1656,-50.602,-0.48132,0.87646,0.012266,41.725,0.15099,0.069117,0.98612,-35.51
    8835 
    8836 > select clear
    8837 
    8838 > combine #13,14,15,17,18
    8839 
    8840 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8841 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8842 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8843 
    8844 > hide #!23 models
    8845 
    8846 > combine #13,14,15,17,18
    8847 
    8848 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8849 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8850 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8851 
    8852 > combine #13,14,15,17,18
    8853 
    8854 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    8855 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    8856 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    8857 
    8858 > color #47 #73fa79ff
    8859 
    8860 > color #48 #ff8ad8ff
    8861 
    8862 > color #49 #fffc79ff
    8863 
    8864 > select add #47
    8865 
    8866 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8867 
    8868 > view matrix models
    8869 > #47,0.93679,0.34915,0.022882,-62.232,-0.34379,0.93062,-0.12551,99.48,-0.065117,0.10971,0.99183,-11.275
    8870 
    8871 > fitmap sel inMap #8
    8872 
    8873 Fit molecule combination (#47) to map postprocess_masked330_onepf.mrc (#8)
    8874 using 2584 atoms 
    8875 average map value = 0.01299, steps = 80 
    8876 shifted from previous position = 5.13 
    8877 rotated from previous position = 3.34 degrees 
    8878 atoms outside contour = 1527, contour level = 0.013465 
    8879  
    8880 Position of combination (#47) relative to postprocess_masked330_onepf.mrc (#8)
    8881 coordinates: 
    8882 Matrix rotation and translation 
    8883 0.93429364 0.35193488 0.05689661 -74.33525106 
    8884 -0.34718149 0.93445833 -0.07907366 90.26911374 
    8885 -0.08099629 0.05412457 0.99524376 3.97768223 
    8886 Axis 0.18374007 0.19021611 -0.96439485 
    8887 Axis point 212.83886941 250.78680791 0.00000000 
    8888 Rotation angle (degrees) 21.25158154 
    8889 Shift along axis -0.32378132 
    8890  
    8891 
    8892 > select add #48
    8893 
    8894 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    8895 
    8896 > select subtract #47
    8897 
    8898 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8899 
    8900 > view matrix models
    8901 > #48,0.93679,0.34915,0.022882,-73.546,-0.34379,0.93062,-0.12551,53.044,-0.065117,0.10971,0.99183,-11.833
    8902 
    8903 > fitmap sel inMap #8
    8904 
    8905 Fit molecule combination (#48) to map postprocess_masked330_onepf.mrc (#8)
    8906 using 2584 atoms 
    8907 average map value = 0.01135, steps = 112 
    8908 shifted from previous position = 5.04 
    8909 rotated from previous position = 7.08 degrees 
    8910 atoms outside contour = 1631, contour level = 0.013465 
    8911  
    8912 Position of combination (#48) relative to postprocess_masked330_onepf.mrc (#8)
    8913 coordinates: 
    8914 Matrix rotation and translation 
    8915 0.90905774 0.41457059 -0.04177629 -64.68519892 
    8916 -0.41405563 0.88758732 -0.20185809 92.72612520 
    8917 -0.04660432 0.20079837 0.97852340 -33.63506908 
    8918 Axis 0.43705680 0.00524050 -0.89941864 
    8919 Axis point 170.68293528 196.07188799 0.00000000 
    8920 Rotation angle (degrees) 27.42876541 
    8921 Shift along axis 2.46683336 
    8922  
    8923 
    8924 > select add #49
    8925 
    8926 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    8927 
    8928 > select subtract #48
    8929 
    8930 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    8931 
    8932 > view matrix models
    8933 > #49,0.93679,0.34915,0.022882,-76.73,-0.34379,0.93062,-0.12551,30.365,-0.065117,0.10971,0.99183,-11.403
    8934 
    8935 > fitmap sel inMap #8
    8936 
    8937 Fit molecule combination (#49) to map postprocess_masked330_onepf.mrc (#8)
    8938 using 2584 atoms 
    8939 average map value = 0.007607, steps = 132 
    8940 shifted from previous position = 7.08 
    8941 rotated from previous position = 12.5 degrees 
    8942 atoms outside contour = 1950, contour level = 0.013465 
    8943  
    8944 Position of combination (#49) relative to postprocess_masked330_onepf.mrc (#8)
    8945 coordinates: 
    8946 Matrix rotation and translation 
    8947 0.90179327 0.41568133 -0.11822829 -49.66296417 
    8948 -0.43207472 0.86153159 -0.26659850 89.70157466 
    8949 -0.00896261 0.29150019 0.95652878 -57.37770885 
    8950 Axis 0.54670820 -0.10703562 -0.83045380 
    8951 Axis point 155.64087773 170.57656295 -0.00000000 
    8952 Rotation angle (degrees) 30.69163275 
    8953 Shift along axis 10.89712291 
    8954  
    8955 
    8956 > hide #!8 models
    8957 
    8958 > hide #!13-25 target m
    8959 
    8960 > hide #!47-49 target m
    8961 
    8962 > select subtract #49
    8963 
    8964 Nothing selected 
    8965 
    8966 > show #!9 models
    8967 
    8968 > hide #!9 models
    8969 
    8970 > show #!47-49 target m
    8971 
    8972 > show #!13-15,17-18 target m
    8973 
    8974 > show #!9 models
    8975 
    8976 > hide #!9 models
    8977 
    8978 > show #!9 models
    8979 
    8980 > hide #!9 models
    8981 
    8982 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    8983 > MRCLaboratoryofMolecularBiology/Documents/Carter
    8984 > Lab/Diorge/Membranes/Fit14-8.cxs"
    8985 
    8986 > select add #14
    8987 
    8988 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    8989 
    8990 > select subtract #14
    8991 
    8992 Nothing selected 
    8993 
    8994 > select add #15
    8995 
    8996 450 atoms, 449 bonds, 30 residues, 1 model selected 
    8997 
    8998 > ui mousemode right "translate selected models"
    8999 
    9000 > view matrix models
    9001 > #15,0.96754,0.025808,-0.2514,54.666,-0.054053,0.99289,-0.1061,36.811,0.24688,0.11624,0.96205,-61.046
    9002 
    9003 > view matrix models
    9004 > #15,0.96754,0.025808,-0.2514,52.8,-0.054053,0.99289,-0.1061,36.606,0.24688,0.11624,0.96205,-61.355
    9005 
    9006 > view matrix models
    9007 > #15,0.96754,0.025808,-0.2514,52.585,-0.054053,0.99289,-0.1061,36.772,0.24688,0.11624,0.96205,-60.603
    9008 
    9009 > view matrix models
    9010 > #15,0.96754,0.025808,-0.2514,52.732,-0.054053,0.99289,-0.1061,36.453,0.24688,0.11624,0.96205,-61.518
    9011 
    9012 > select add #14
    9013 
    9014 901 atoms, 899 bonds, 1 pseudobond, 59 residues, 3 models selected 
    9015 
    9016 > select subtract #15
    9017 
    9018 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    9019 
    9020 > view matrix models
    9021 > #14,0.87016,0.44245,-0.21693,-27.109,-0.28023,0.80643,0.52072,-34.047,0.40533,-0.39232,0.82571,40.659
    9022 
    9023 > ui mousemode right "rotate selected models"
    9024 
    9025 > view matrix models
    9026 > #14,0.87715,0.42217,-0.22889,-21.817,-0.28741,0.84334,0.45405,-27.84,0.38472,-0.33249,0.86107,25.034
    9027 
    9028 > close #47-49
    9029 
    9030 > combine #13,14,15,17,18
    9031 
    9032 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    9033 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    9034 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    9035 
    9036 > combine #13,14,15,17,18
    9037 
    9038 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    9039 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    9040 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    9041 
    9042 > combine #13,14,15,17,18
    9043 
    9044 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    9045 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    9046 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    9047 
    9048 > combine #13,14,15,17,18
    9049 
    9050 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    9051 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    9052 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    9053 
    9054 > close #50
    9055 
    9056 > color #47 #fffb00ff
    9057 
    9058 > color #48 #ff85ffff
    9059 
    9060 > color #49 #00fdffff
    9061 
    9062 > select add #47
    9063 
    9064 3035 atoms, 3032 bonds, 4 pseudobonds, 195 residues, 4 models selected 
    9065 
    9066 > select subtract #14
    9067 
    9068 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9069 
    9070 > show #!8 models
    9071 
    9072 > view matrix models
    9073 > #47,0.93779,0.336,-0.08745,-41.443,-0.34718,0.90937,-0.22914,103.3,0.002535,0.24524,0.96946,-50.638
    9074 
    9075 > ui mousemode right "translate selected models"
    9076 
    9077 > view matrix models
    9078 > #47,0.93779,0.336,-0.08745,-45.604,-0.34718,0.90937,-0.22914,79.157,0.002535,0.24524,0.96946,-50.728
    9079 
    9080 > fitmap sel inMap #8
    9081 
    9082 Fit molecule combination (#47) to map postprocess_masked330_onepf.mrc (#8)
    9083 using 2584 atoms 
    9084 average map value = 0.01094, steps = 188 
    9085 shifted from previous position = 3.41 
    9086 rotated from previous position = 9.56 degrees 
    9087 atoms outside contour = 1669, contour level = 0.013465 
    9088  
    9089 Position of combination (#47) relative to postprocess_masked330_onepf.mrc (#8)
    9090 coordinates: 
    9091 Matrix rotation and translation 
    9092 0.88558376 0.46388801 -0.02343760 -74.32406141 
    9093 -0.46152820 0.87315587 -0.15681378 95.76963429 
    9094 -0.05227935 0.14968886 0.98735005 -22.04259493 
    9095 Axis 0.31427146 0.02957279 -0.94887243 
    9096 Axis point 153.00231682 198.22140267 0.00000000 
    9097 Rotation angle (degrees) 29.18557954 
    9098 Shift along axis 0.38985440 
    9099  
    9100 
    9101 > select add #48
    9102 
    9103 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9104 
    9105 > select subtract #47
    9106 
    9107 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9108 
    9109 > view matrix models
    9110 > #48,0.93679,0.34915,0.022882,-62.894,-0.34379,0.93062,-0.12551,99.225,-0.065117,0.10971,0.99183,-11.121
    9111 
    9112 > fitmap sel inMap #8
    9113 
    9114 Fit molecule combination (#48) to map postprocess_masked330_onepf.mrc (#8)
    9115 using 2584 atoms 
    9116 average map value = 0.01288, steps = 112 
    9117 shifted from previous position = 1.6 
    9118 rotated from previous position = 9.65 degrees 
    9119 atoms outside contour = 1519, contour level = 0.013465 
    9120  
    9121 Position of combination (#48) relative to postprocess_masked330_onepf.mrc (#8)
    9122 coordinates: 
    9123 Matrix rotation and translation 
    9124 0.97350640 0.22192238 -0.05509758 -26.18543385 
    9125 -0.22848136 0.95360173 -0.19606125 85.40629253 
    9126 0.00903077 0.20345566 0.97904251 -45.57734822 
    9127 Axis 0.65984968 -0.10591560 -0.74389534 
    9128 Axis point 340.52016479 181.18500652 0.00000000 
    9129 Rotation angle (degrees) 17.62184404 
    9130 Shift along axis 7.58046849 
    9131  
    9132 
    9133 > select add #49
    9134 
    9135 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9136 
    9137 > select subtract #48
    9138 
    9139 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9140 
    9141 > view matrix models
    9142 > #49,0.93679,0.34915,0.022882,-78.241,-0.34379,0.93062,-0.12551,28.94,-0.065117,0.10971,0.99183,-13.066
    9143 
    9144 > fitmap sel inMap #8
    9145 
    9146 Fit molecule combination (#49) to map postprocess_masked330_onepf.mrc (#8)
    9147 using 2584 atoms 
    9148 average map value = 0.007533, steps = 120 
    9149 shifted from previous position = 8.66 
    9150 rotated from previous position = 13.4 degrees 
    9151 atoms outside contour = 1947, contour level = 0.013465 
    9152  
    9153 Position of combination (#49) relative to postprocess_masked330_onepf.mrc (#8)
    9154 coordinates: 
    9155 Matrix rotation and translation 
    9156 0.86831758 0.47972422 -0.12605259 -55.72759743 
    9157 -0.49600725 0.84041315 -0.21836334 97.28367521 
    9158 0.00118207 0.25213173 0.96769220 -52.28168252 
    9159 Axis 0.43137351 -0.11665513 -0.89459962 
    9160 Axis point 145.30863294 166.28838985 0.00000000 
    9161 Rotation angle (degrees) 33.04826621 
    9162 Shift along axis 11.38312395 
    9163  
    9164 
    9165 > select clear
    9166 
    9167 > select add #49
    9168 
    9169 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9170 
    9171 > view matrix models
    9172 > #49,0.86833,0.47991,-0.12523,-56.101,-0.49598,0.84041,-0.21843,97.336,0.00041946,0.25178,0.96778,-52.06
    9173 
    9174 > view matrix models
    9175 > #49,0.86833,0.47991,-0.12523,-59.256,-0.49598,0.84041,-0.21843,99.897,0.00041946,0.25178,0.96778,-52.36
    9176 
    9177 > view matrix models
    9178 > #49,0.86833,0.47991,-0.12523,-58.925,-0.49598,0.84041,-0.21843,100.73,0.00041946,0.25178,0.96778,-53.066
    9179 
    9180 > view matrix models
    9181 > #49,0.86833,0.47991,-0.12523,-59.047,-0.49598,0.84041,-0.21843,100.56,0.00041946,0.25178,0.96778,-52.776
    9182 
    9183 > view matrix models
    9184 > #49,0.86833,0.47991,-0.12523,-59.513,-0.49598,0.84041,-0.21843,101.06,0.00041946,0.25178,0.96778,-51.406
    9185 
    9186 > view matrix models
    9187 > #49,0.86833,0.47991,-0.12523,-59.494,-0.49598,0.84041,-0.21843,101.58,0.00041946,0.25178,0.96778,-51.911
    9188 
    9189 > select clear
    9190 
    9191 > hide #!8 models
    9192 
    9193 > show #!8 models
    9194 
    9195 > select add #47
    9196 
    9197 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9198 
    9199 > view matrix models
    9200 > #47,0.88555,0.46398,-0.022602,-77.436,-0.4615,0.87316,-0.15688,96.772,-0.053054,0.14936,0.98736,-22.057
    9201 
    9202 > view matrix models
    9203 > #47,0.88555,0.46398,-0.022602,-77.446,-0.4615,0.87316,-0.15688,96.851,-0.053054,0.14936,0.98736,-22.008
    9204 
    9205 > view matrix models
    9206 > #47,0.88555,0.46398,-0.022602,-77.225,-0.4615,0.87316,-0.15688,97.194,-0.053054,0.14936,0.98736,-22.742
    9207 
    9208 > view matrix models
    9209 > #47,0.88555,0.46398,-0.022602,-77.528,-0.4615,0.87316,-0.15688,97.181,-0.053054,0.14936,0.98736,-22.806
    9210 
    9211 > view matrix models
    9212 > #47,0.88555,0.46398,-0.022602,-77.954,-0.4615,0.87316,-0.15688,97.077,-0.053054,0.14936,0.98736,-21.441
    9213 
    9214 > view matrix models
    9215 > #47,0.88555,0.46398,-0.022602,-77.743,-0.4615,0.87316,-0.15688,97.635,-0.053054,0.14936,0.98736,-21.852
    9216 
    9217 > ui mousemode right "rotate selected models"
    9218 
    9219 > view matrix models
    9220 > #47,0.88917,0.45745,-0.01099,-79.362,-0.42857,0.82414,-0.3703,146.37,-0.16034,0.33397,0.92885,-30.716
    9221 
    9222 > view matrix models
    9223 > #47,0.88807,0.45967,-0.0057502,-80.732,-0.44306,0.85251,-0.27736,123.58,-0.12259,0.24887,0.96075,-25.36
    9224 
    9225 > ui mousemode right "translate selected models"
    9226 
    9227 > view matrix models
    9228 > #47,0.88807,0.45967,-0.0057502,-80.501,-0.44306,0.85251,-0.27736,123.97,-0.12259,0.24887,0.96075,-25.29
    9229 
    9230 > ui mousemode right "rotate selected models"
    9231 
    9232 > view matrix models
    9233 > #47,0.91062,0.40805,-0.065346,-60.895,-0.39014,0.79676,-0.46148,164.28,-0.13624,0.44572,0.88474,-51.603
    9234 
    9235 > ui mousemode right "translate selected models"
    9236 
    9237 > view matrix models
    9238 > #47,0.91062,0.40805,-0.065346,-60.341,-0.39014,0.79676,-0.46148,165.29,-0.13624,0.44572,0.88474,-51.428
    9239 
    9240 > view matrix models
    9241 > #47,0.91062,0.40805,-0.065346,-61.21,-0.39014,0.79676,-0.46148,162.14,-0.13624,0.44572,0.88474,-54.396
    9242 
    9243 > fitmap sel inMap #8
    9244 
    9245 Fit molecule combination (#47) to map postprocess_masked330_onepf.mrc (#8)
    9246 using 2584 atoms 
    9247 average map value = 0.01094, steps = 220 
    9248 shifted from previous position = 3.81 
    9249 rotated from previous position = 18.9 degrees 
    9250 atoms outside contour = 1669, contour level = 0.013465 
    9251  
    9252 Position of combination (#47) relative to postprocess_masked330_onepf.mrc (#8)
    9253 coordinates: 
    9254 Matrix rotation and translation 
    9255 0.88556722 0.46392202 -0.02338930 -74.33974357 
    9256 -0.46155263 0.87313659 -0.15684918 95.78687556 
    9257 -0.05234374 0.14969589 0.98734557 -22.02592470 
    9258 Axis 0.31429173 0.02968614 -0.94886218 
    9259 Axis point 153.01810848 198.24251363 0.00000000 
    9260 Rotation angle (degrees) 29.18794662 
    9261 Shift along axis 0.37874345 
    9262  
    9263 
    9264 > view matrix models
    9265 > #47,0.88554,0.46402,-0.022553,-77.838,-0.46152,0.87314,-0.15691,96.295,-0.053119,0.14936,0.98735,-22.173
    9266 
    9267 > select subtract #47
    9268 
    9269 Nothing selected 
    9270 
    9271 > select add #48
    9272 
    9273 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9274 
    9275 > view matrix models
    9276 > #48,0.97352,0.22206,-0.054267,-28.587,-0.22845,0.9536,-0.19613,85.746,0.008197,0.20333,0.97908,-45.801
    9277 
    9278 > view matrix models
    9279 > #48,0.97352,0.22206,-0.054267,-28.534,-0.22845,0.9536,-0.19613,85.732,0.008197,0.20333,0.97908,-45.973
    9280 
    9281 > view matrix models
    9282 > #48,0.97352,0.22206,-0.054267,-29.127,-0.22845,0.9536,-0.19613,85.907,0.008197,0.20333,0.97908,-45.974
    9283 
    9284 > ui mousemode right "rotate selected models"
    9285 
    9286 > view matrix models
    9287 > #48,0.96405,0.25823,-0.062708,-33.741,-0.26558,0.94443,-0.1937,94.735,0.0092032,0.20339,0.97905,-46.18
    9288 
    9289 > ui mousemode right "translate selected models"
    9290 
    9291 > view matrix models
    9292 > #48,0.96405,0.25823,-0.062708,-33.956,-0.26558,0.94443,-0.1937,94.761,0.0092032,0.20339,0.97905,-46.18
    9293 
    9294 > select add #49
    9295 
    9296 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9297 
    9298 > select subtract #48
    9299 
    9300 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9301 
    9302 > view matrix models
    9303 > #49,0.86833,0.47991,-0.12523,-59.565,-0.49598,0.84041,-0.21843,101.55,0.00041946,0.25178,0.96778,-51.878
    9304 
    9305 > ui mousemode right "rotate selected models"
    9306 
    9307 > view matrix models
    9308 > #49,0.90343,0.41209,-0.11832,-52.456,-0.42868,0.86357,-0.26549,92.871,-0.0072273,0.29058,0.95682,-56.925
    9309 
    9310 > view matrix models
    9311 > #49,0.89983,0.39701,-0.18082,-35.435,-0.43247,0.86621,-0.2503,89.876,0.05726,0.30343,0.95113,-71.256
    9312 
    9313 > view matrix models
    9314 > #49,0.91256,0.28883,-0.28952,9.0499,-0.37643,0.86991,-0.31868,92.206,0.15981,0.3998,0.90256,-103.12
    9315 
    9316 > ui mousemode right "translate selected models"
    9317 
    9318 > view matrix models
    9319 > #49,0.91256,0.28883,-0.28952,8.6431,-0.37643,0.86991,-0.31868,89.691,0.15981,0.3998,0.90256,-105.34
    9320 
    9321 > view matrix models
    9322 > #49,0.91256,0.28883,-0.28952,8.7922,-0.37643,0.86991,-0.31868,90.013,0.15981,0.3998,0.90256,-105.69
    9323 
    9324 > select clear
    9325 
    9326 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    9327 > MRCLaboratoryofMolecularBiology/Documents/Carter
    9328 > Lab/Diorge/Membranes/Fit14-4.cxs"
    9329 
    9330 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    9331 > MRCLaboratoryofMolecularBiology/Documents/Carter
    9332 > Lab/Diorge/Membranes/Fit14-8.cxs"
    9333 
    9334 > hide #!8 models
    9335 
    9336 > select add #49
    9337 
    9338 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9339 
    9340 > ui mousemode right "rotate selected models"
    9341 
    9342 > view matrix models
    9343 > #49,0.93905,0.3336,0.083055,-83.414,-0.29513,0.90616,-0.30294,62.665,-0.17632,0.25996,0.94938,-18.001
    9344 
    9345 > view matrix models
    9346 > #49,0.91985,0.38197,0.089313,-91.93,-0.36171,0.91401,-0.18369,49.278,-0.1518,0.13666,0.97892,-0.90961
    9347 
    9348 > view matrix models
    9349 > #49,0.90687,0.2613,0.33062,-111.81,-0.23122,0.96444,-0.12801,0.87301,-0.35232,0.039642,0.93504,69.303
    9350 
    9351 > view matrix models
    9352 > #49,0.87272,0.40678,0.26999,-125.64,-0.35497,0.90834,-0.22116,56.98,-0.33521,0.097173,0.93712,52.483
    9353 
    9354 > view matrix models
    9355 > #49,0.81377,0.53575,0.22527,-134.16,-0.48247,0.83885,-0.25211,104.03,-0.32403,0.096475,0.94111,49.634
    9356 
    9357 > view matrix models
    9358 > #49,0.83444,0.49862,0.23472,-131.72,-0.44333,0.86033,-0.25159,91.402,-0.32738,0.10588,0.93894,48.602
    9359 
    9360 > ui mousemode right "rotate selected models"
    9361 
    9362 > ui mousemode right "translate selected models"
    9363 
    9364 > view matrix models
    9365 > #49,0.83444,0.49862,0.23472,-130.18,-0.44333,0.86033,-0.25159,90.871,-0.32738,0.10588,0.93894,48.224
    9366 
    9367 > view matrix models
    9368 > #49,0.83444,0.49862,0.23472,-130.03,-0.44333,0.86033,-0.25159,91.243,-0.32738,0.10588,0.93894,48.204
    9369 
    9370 > ui mousemode right "rotate selected models"
    9371 
    9372 > view matrix models
    9373 > #49,0.8384,0.48078,0.25679,-131.31,-0.4528,0.87661,-0.16288,71.097,-0.30342,0.020285,0.95264,60.117
    9374 
    9375 > ui mousemode right "translate selected models"
    9376 
    9377 > view matrix models
    9378 > #49,0.8384,0.48078,0.25679,-132.02,-0.4528,0.87661,-0.16288,70.715,-0.30342,0.020285,0.95264,63.839
    9379 
    9380 > ui mousemode right "rotate selected models"
    9381 
    9382 > view matrix models
    9383 > #49,0.8678,0.4717,0.15626,-114.95,-0.45661,0.88102,-0.12371,62.373,-0.19602,0.036002,0.97994,33.675
    9384 
    9385 > view matrix models
    9386 > #49,0.8293,0.55556,0.060078,-106.62,-0.54815,0.82967,-0.10576,88.19,-0.1086,0.054772,0.99258,9.7399
    9387 
    9388 > ui mousemode right "translate selected models"
    9389 
    9390 > view matrix models
    9391 > #49,0.8293,0.55556,0.060078,-110.01,-0.54815,0.82967,-0.10576,87.985,-0.1086,0.054772,0.99258,8.7683
    9392 
    9393 > view matrix models
    9394 > #49,0.8293,0.55556,0.060078,-110.15,-0.54815,0.82967,-0.10576,89.72,-0.1086,0.054772,0.99258,8.7854
    9395 
    9396 > view matrix models
    9397 > #49,0.8293,0.55556,0.060078,-108.73,-0.54815,0.82967,-0.10576,88.677,-0.1086,0.054772,0.99258,9.4745
    9398 
    9399 > view matrix models
    9400 > #49,0.8293,0.55556,0.060078,-110.09,-0.54815,0.82967,-0.10576,88.973,-0.1086,0.054772,0.99258,9.5253
    9401 
    9402 > view matrix models
    9403 > #49,0.8293,0.55556,0.060078,-110.83,-0.54815,0.82967,-0.10576,88.291,-0.1086,0.054772,0.99258,9.4879
    9404 
    9405 > ui mousemode right "rotate selected models"
    9406 
    9407 > select add #47
    9408 
    9409 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9410 
    9411 > view matrix models
    9412 > #47,0.90117,0.42666,-0.076528,-61.711,-0.42904,0.90312,-0.017117,54.38,0.061811,0.048259,0.99692,-25.259,#49,0.85109,0.52501,0.0039991,-96.271,-0.52477,0.85042,0.037492,49.614,0.016283,-0.034008,0.99929,5.3699
    9413 
    9414 > undo
    9415 
    9416 > ui mousemode right "translate selected models"
    9417 
    9418 > view matrix models
    9419 > #47,0.88554,0.46402,-0.022553,-77.526,-0.46152,0.87314,-0.15691,96.274,-0.053119,0.14936,0.98735,-20.569,#49,0.8293,0.55556,0.060078,-110.52,-0.54815,0.82967,-0.10576,88.269,-0.1086,0.054772,0.99258,11.092
    9420 
    9421 > select add #48
    9422 
    9423 7752 atoms, 7746 bonds, 9 pseudobonds, 498 residues, 6 models selected 
    9424 
    9425 > select subtract #49
    9426 
    9427 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9428 
    9429 > select subtract #47
    9430 
    9431 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9432 
    9433 > view matrix models
    9434 > #48,0.96405,0.25823,-0.062708,-34.438,-0.26558,0.94443,-0.1937,93.346,0.0092032,0.20339,0.97905,-45.768
    9435 
    9436 > select add #49
    9437 
    9438 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9439 
    9440 > select subtract #48
    9441 
    9442 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9443 
    9444 > ui mousemode right "rotate selected models"
    9445 
    9446 > view matrix models
    9447 > #49,0.83272,0.5506,0.058447,-109.73,-0.54074,0.8314,-0.128,91.021,-0.11907,0.074984,0.99005,9.0717
    9448 
    9449 > undo
    9450 
    9451 > view matrix models
    9452 > #49,0.90632,0.42258,-0.0030504,-82.363,-0.42163,0.90375,-0.073933,40.196,-0.028486,0.068293,0.99726,-8.5828
    9453 
    9454 > ui mousemode right "translate selected models"
    9455 
    9456 > view matrix models
    9457 > #49,0.90632,0.42258,-0.0030504,-82.551,-0.42163,0.90375,-0.073933,41.183,-0.028486,0.068293,0.99726,-7.4474
    9458 
    9459 > view matrix models
    9460 > #49,0.90632,0.42258,-0.0030504,-80.199,-0.42163,0.90375,-0.073933,41.321,-0.028486,0.068293,0.99726,-6.7089
    9461 
    9462 > view matrix models
    9463 > #49,0.90632,0.42258,-0.0030504,-82.058,-0.42163,0.90375,-0.073933,40.855,-0.028486,0.068293,0.99726,-6.8326
    9464 
    9465 > view matrix models
    9466 > #49,0.90632,0.42258,-0.0030504,-80.883,-0.42163,0.90375,-0.073933,41.378,-0.028486,0.068293,0.99726,-6.8149
    9467 
    9468 > view matrix models
    9469 > #49,0.90632,0.42258,-0.0030504,-80.447,-0.42163,0.90375,-0.073933,40.603,-0.028486,0.068293,0.99726,-6.7478
    9470 
    9471 > select add #48
    9472 
    9473 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9474 
    9475 > select subtract #49
    9476 
    9477 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9478 
    9479 > view matrix models
    9480 > #48,0.96405,0.25823,-0.062708,-34.47,-0.26558,0.94443,-0.1937,94.448,0.0092032,0.20339,0.97905,-45.838
    9481 
    9482 > view matrix models
    9483 > #48,0.96405,0.25823,-0.062708,-34.383,-0.26558,0.94443,-0.1937,94.841,0.0092032,0.20339,0.97905,-45.661
    9484 
    9485 > view matrix models
    9486 > #48,0.96405,0.25823,-0.062708,-34.615,-0.26558,0.94443,-0.1937,94.766,0.0092032,0.20339,0.97905,-45.64
    9487 
    9488 > show #!16 models
    9489 
    9490 > hide #!16 models
    9491 
    9492 > show #!8 models
    9493 
    9494 > select add #49
    9495 
    9496 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9497 
    9498 > select subtract #48
    9499 
    9500 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9501 
    9502 > ui mousemode right "rotate selected models"
    9503 
    9504 > view matrix models
    9505 > #49,0.87356,0.48653,-0.013541,-86.395,-0.48609,0.87067,-0.075156,60.945,-0.024777,0.072235,0.99708,-8.3294
    9506 
    9507 > ui mousemode right "translate selected models"
    9508 
    9509 > view matrix models
    9510 > #49,0.87356,0.48653,-0.013541,-86.864,-0.48609,0.87067,-0.075156,61.695,-0.024777,0.072235,0.99708,-8.394
    9511 
    9512 > view matrix models
    9513 > #49,0.87356,0.48653,-0.013541,-86.212,-0.48609,0.87067,-0.075156,62.137,-0.024777,0.072235,0.99708,-9.6149
    9514 
    9515 > view matrix models
    9516 > #49,0.87356,0.48653,-0.013541,-86.119,-0.48609,0.87067,-0.075156,61.978,-0.024777,0.072235,0.99708,-10.553
    9517 
    9518 > view matrix models
    9519 > #49,0.87356,0.48653,-0.013541,-86.24,-0.48609,0.87067,-0.075156,62.04,-0.024777,0.072235,0.99708,-10.305
    9520 
    9521 > combine #13,14,15,17,18
    9522 
    9523 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    9524 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    9525 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    9526 
    9527 > select add #50
    9528 
    9529 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9530 
    9531 > select subtract #49
    9532 
    9533 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9534 
    9535 > view matrix models
    9536 > #50,0.93679,0.34915,0.022882,-67.087,-0.34379,0.93062,-0.12551,119.74,-0.065117,0.10971,0.99183,-11.544
    9537 
    9538 > color #50 #ff2f92ff
    9539 
    9540 > color #50 #73fa79ff
    9541 
    9542 > select clear
    9543 
    9544 > select add #50
    9545 
    9546 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9547 
    9548 > view matrix models
    9549 > #50,0.93679,0.34915,0.022882,-65.243,-0.34379,0.93062,-0.12551,121.05,-0.065117,0.10971,0.99183,-10.833
    9550 
    9551 > view matrix models
    9552 > #50,0.93679,0.34915,0.022882,-66.888,-0.34379,0.93062,-0.12551,121.26,-0.065117,0.10971,0.99183,-11.333
    9553 
    9554 > ui mousemode right "move picked models"
    9555 
    9556 > view matrix models
    9557 > #8,1,-3.3282e-05,0.00084123,-1.2857,3.3336e-05,1,-6.4811e-05,1.5181,-0.00084122,6.4839e-05,1,0.0042275
    9558 
    9559 > undo
    9560 
    9561 > ui mousemode right "translate selected models"
    9562 
    9563 > view matrix models
    9564 > #50,0.93679,0.34915,0.022882,-66.94,-0.34379,0.93062,-0.12551,121.35,-0.065117,0.10971,0.99183,-11.341
    9565 
    9566 > view matrix models
    9567 > #50,0.93679,0.34915,0.022882,-66.497,-0.34379,0.93062,-0.12551,121.23,-0.065117,0.10971,0.99183,-11.212
    9568 
    9569 > ui mousemode right "rotate selected models"
    9570 
    9571 > view matrix models
    9572 > #50,0.95137,0.30714,0.023853,-60.012,-0.30283,0.94661,-0.11059,106.53,-0.056545,0.097987,0.99358,-10.588
    9573 
    9574 > view matrix models
    9575 > #50,0.95512,0.29529,0.02345,-57.974,-0.28815,0.94452,-0.15763,113.84,-0.068695,0.1438,0.98722,-17.296
    9576 
    9577 > ui mousemode right "translate selected models"
    9578 
    9579 > view matrix models
    9580 > #50,0.95512,0.29529,0.02345,-57.715,-0.28815,0.94452,-0.15763,111.84,-0.068695,0.1438,0.98722,-18.643
    9581 
    9582 > view matrix models
    9583 > #50,0.95512,0.29529,0.02345,-57.982,-0.28815,0.94452,-0.15763,111.98,-0.068695,0.1438,0.98722,-18.67
    9584 
    9585 > view matrix models
    9586 > #50,0.95512,0.29529,0.02345,-56.42,-0.28815,0.94452,-0.15763,113.81,-0.068695,0.1438,0.98722,-18.27
    9587 
    9588 > view matrix models
    9589 > #50,0.95512,0.29529,0.02345,-56.182,-0.28815,0.94452,-0.15763,113.75,-0.068695,0.1438,0.98722,-18.266
    9590 
    9591 > view matrix models
    9592 > #50,0.95512,0.29529,0.02345,-56.208,-0.28815,0.94452,-0.15763,113.75,-0.068695,0.1438,0.98722,-18.269
    9593 
    9594 > view matrix models
    9595 > #50,0.95512,0.29529,0.02345,-56.467,-0.28815,0.94452,-0.15763,114.2,-0.068695,0.1438,0.98722,-16.87
    9596 
    9597 > select clear
    9598 
    9599 > hide #!8 models
    9600 
    9601 > show #!8 models
    9602 
    9603 > select add #49
    9604 
    9605 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9606 
    9607 > select add #47
    9608 
    9609 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9610 
    9611 > view matrix models
    9612 > #47,0.88554,0.46402,-0.022553,-77.29,-0.46152,0.87314,-0.15691,96.253,-0.053119,0.14936,0.98735,-21.57,#49,0.87356,0.48653,-0.013541,-86.004,-0.48609,0.87067,-0.075156,62.019,-0.024777,0.072235,0.99708,-11.306
    9613 
    9614 > view matrix models
    9615 > #47,0.88554,0.46402,-0.022553,-77.01,-0.46152,0.87314,-0.15691,96.184,-0.053119,0.14936,0.98735,-22.419,#49,0.87356,0.48653,-0.013541,-85.724,-0.48609,0.87067,-0.075156,61.951,-0.024777,0.072235,0.99708,-12.156
    9616 
    9617 > view matrix models
    9618 > #47,0.88554,0.46402,-0.022553,-76.013,-0.46152,0.87314,-0.15691,97.483,-0.053119,0.14936,0.98735,-22.223,#49,0.87356,0.48653,-0.013541,-84.726,-0.48609,0.87067,-0.075156,63.25,-0.024777,0.072235,0.99708,-11.96
    9619 
    9620 > view matrix models
    9621 > #47,0.88554,0.46402,-0.022553,-76.72,-0.46152,0.87314,-0.15691,96.509,-0.053119,0.14936,0.98735,-22.657,#49,0.87356,0.48653,-0.013541,-85.434,-0.48609,0.87067,-0.075156,62.275,-0.024777,0.072235,0.99708,-12.393
    9622 
    9623 > select subtract #47
    9624 
    9625 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9626 
    9627 > ui mousemode right "rotate selected models"
    9628 
    9629 > view matrix models
    9630 > #49,0.88645,0.46222,-0.023456,-80.391,-0.4592,0.87207,-0.16922,76.117,-0.057764,0.16078,0.9853,-23.61
    9631 
    9632 > view matrix models
    9633 > #49,0.88929,0.45424,-0.053118,-73.014,-0.45014,0.84887,-0.2771,101.87,-0.08078,0.27034,0.95937,-38.622
    9634 
    9635 > view matrix models
    9636 > #49,0.89355,0.44482,-0.060903,-70.1,-0.44185,0.8472,-0.29498,104.32,-0.079614,0.29049,0.95356,-42.222
    9637 
    9638 > view matrix models
    9639 > #49,0.89623,0.4397,-0.058538,-69.952,-0.43647,0.85063,-0.29311,102.11,-0.079088,0.28825,0.95428,-41.966
    9640 
    9641 > select add #47
    9642 
    9643 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9644 
    9645 > select subtract #49
    9646 
    9647 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9648 
    9649 > view matrix models
    9650 > #47,0.91636,0.38618,-0.10559,-47.944,-0.39878,0.85712,-0.32607,122.8,-0.035413,0.3409,0.93943,-59.68
    9651 
    9652 > ui mousemode right "translate selected models"
    9653 
    9654 > view matrix models
    9655 > #47,0.91636,0.38618,-0.10559,-47.055,-0.39878,0.85712,-0.32607,123.3,-0.035413,0.3409,0.93943,-59.319
    9656 
    9657 > view matrix models
    9658 > #47,0.91636,0.38618,-0.10559,-46.667,-0.39878,0.85712,-0.32607,123.46,-0.035413,0.3409,0.93943,-59.136
    9659 
    9660 > ui mousemode right "move picked models"
    9661 
    9662 > ui mousemode right "rotate selected models"
    9663 
    9664 > view matrix models
    9665 > #47,0.95494,0.28553,-0.081015,-36.437,-0.29655,0.90687,-0.2994,86.707,-0.012016,0.30993,0.95068,-59
    9666 
    9667 > ui mousemode right "translate selected models"
    9668 
    9669 > view matrix models
    9670 > #47,0.95494,0.28553,-0.081015,-36.868,-0.29655,0.90687,-0.2994,85.166,-0.012016,0.30993,0.95068,-59.299
    9671 
    9672 > view matrix models
    9673 > #47,0.95494,0.28553,-0.081015,-36.831,-0.29655,0.90687,-0.2994,85.221,-0.012016,0.30993,0.95068,-59.38
    9674 
    9675 > select add #49
    9676 
    9677 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9678 
    9679 > view matrix models
    9680 > #47,0.95494,0.28553,-0.081015,-35.298,-0.29655,0.90687,-0.2994,83.98,-0.012016,0.30993,0.95068,-58.439,#49,0.89623,0.4397,-0.058538,-68.419,-0.43647,0.85063,-0.29311,100.87,-0.079088,0.28825,0.95428,-41.026
    9681 
    9682 > undo
    9683 
    9684 > select subtract #47
    9685 
    9686 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9687 
    9688 > view matrix models
    9689 > #49,0.89623,0.4397,-0.058538,-68.62,-0.43647,0.85063,-0.29311,101.02,-0.079088,0.28825,0.95428,-41.011
    9690 
    9691 > view matrix models
    9692 > #49,0.89623,0.4397,-0.058538,-68.543,-0.43647,0.85063,-0.29311,99.427,-0.079088,0.28825,0.95428,-41.428
    9693 
    9694 > view matrix models
    9695 > #49,0.89623,0.4397,-0.058538,-68.572,-0.43647,0.85063,-0.29311,99.613,-0.079088,0.28825,0.95428,-41.438
    9696 
    9697 > ui mousemode right "rotate selected models"
    9698 
    9699 > view matrix models
    9700 > #49,0.92766,0.3704,-0.047461,-61.27,-0.36857,0.88774,-0.27582,74.369,-0.060029,0.27336,0.96004,-42.968
    9701 
    9702 > view matrix models
    9703 > #49,0.93591,0.34986,-0.040852,-59.585,-0.34738,0.89761,-0.27133,67.066,-0.058256,0.26813,0.96162,-42.454
    9704 
    9705 > select add #48
    9706 
    9707 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9708 
    9709 > select subtract #49
    9710 
    9711 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9712 
    9713 > view matrix models
    9714 > #48,0.96782,0.24343,-0.063765,-31.775,-0.25163,0.93912,-0.23396,101.55,0.0029319,0.24247,0.97015,-51.445
    9715 
    9716 > undo
    9717 
    9718 > ui mousemode right "translate selected models"
    9719 
    9720 > view matrix models
    9721 > #48,0.96405,0.25823,-0.062708,-34.381,-0.26558,0.94443,-0.1937,94.755,0.0092032,0.20339,0.97905,-46.182
    9722 
    9723 > view matrix models
    9724 > #48,0.96405,0.25823,-0.062708,-34.063,-0.26558,0.94443,-0.1937,95.182,0.0092032,0.20339,0.97905,-46.574
    9725 
    9726 > view matrix models
    9727 > #48,0.96405,0.25823,-0.062708,-33.832,-0.26558,0.94443,-0.1937,94.894,0.0092032,0.20339,0.97905,-46.632
    9728 
    9729 > select add #50
    9730 
    9731 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9732 
    9733 > select subtract #48
    9734 
    9735 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9736 
    9737 > ui mousemode right "translate selected models"
    9738 
    9739 > view matrix models
    9740 > #50,0.95512,0.29529,0.02345,-58.955,-0.28815,0.94452,-0.15763,116.06,-0.068695,0.1438,0.98722,-17.498
    9741 
    9742 > view matrix models
    9743 > #50,0.95512,0.29529,0.02345,-58.964,-0.28815,0.94452,-0.15763,116.07,-0.068695,0.1438,0.98722,-17.709
    9744 
    9745 > ui mousemode right "rotate selected models"
    9746 
    9747 > view matrix models
    9748 > #50,0.98767,0.15442,0.025863,-33.857,-0.14009,0.94531,-0.29457,115.24,-0.069936,0.28731,0.95528,-43.436
    9749 
    9750 > ui mousemode right "translate selected models"
    9751 
    9752 > view matrix models
    9753 > #50,0.98767,0.15442,0.025863,-35.401,-0.14009,0.94531,-0.29457,114.24,-0.069936,0.28731,0.95528,-44.04
    9754 
    9755 > view matrix models
    9756 > #50,0.98767,0.15442,0.025863,-35.778,-0.14009,0.94531,-0.29457,112.94,-0.069936,0.28731,0.95528,-44.186
    9757 
    9758 > view matrix models
    9759 > #50,0.98767,0.15442,0.025863,-35.817,-0.14009,0.94531,-0.29457,112.95,-0.069936,0.28731,0.95528,-44.22
    9760 
    9761 > view matrix models
    9762 > #50,0.98767,0.15442,0.025863,-36.08,-0.14009,0.94531,-0.29457,113,-0.069936,0.28731,0.95528,-43.837
    9763 
    9764 > ui mousemode right "rotate selected models"
    9765 
    9766 > view matrix models
    9767 > #50,0.97608,0.19028,0.10514,-58.312,-0.15545,0.94898,-0.27436,110.99,-0.15198,0.25146,0.95586,-19.804
    9768 
    9769 > view matrix models
    9770 > #50,0.9539,0.24132,0.17842,-80.68,-0.19058,0.94633,-0.26103,115.7,-0.23184,0.21499,0.9487,5.5368
    9771 
    9772 > ui mousemode right "translate selected models"
    9773 
    9774 > view matrix models
    9775 > #50,0.9539,0.24132,0.17842,-81.165,-0.19058,0.94633,-0.26103,115.93,-0.23184,0.21499,0.9487,7.0112
    9776 
    9777 > ui mousemode right "rotate selected models"
    9778 
    9779 > view matrix models
    9780 > #50,0.96787,0.22163,0.11877,-67.117,-0.18707,0.9503,-0.24887,111.84,-0.16802,0.21866,0.96123,-8.8643
    9781 
    9782 > ui mousemode right "translate selected models"
    9783 
    9784 > view matrix models
    9785 > #50,0.96787,0.22163,0.11877,-66.509,-0.18707,0.9503,-0.24887,111.75,-0.16802,0.21866,0.96123,-10.105
    9786 
    9787 > select add #48
    9788 
    9789 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9790 
    9791 > select subtract #50
    9792 
    9793 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9794 
    9795 > ui mousemode right "rotate selected models"
    9796 
    9797 > view matrix models
    9798 > #48,0.95628,0.29158,-0.022545,-48.169,-0.28983,0.93458,-0.20631,104.46,-0.039085,0.20382,0.97823,-37.131
    9799 
    9800 > ui mousemode right "translate selected models"
    9801 
    9802 > view matrix models
    9803 > #48,0.95628,0.29158,-0.022545,-48.247,-0.28983,0.93458,-0.20631,104.95,-0.039085,0.20382,0.97823,-36.432
    9804 
    9805 > ui mousemode right "rotate selected models"
    9806 
    9807 > view matrix models
    9808 > #48,0.96541,0.26066,-0.0058344,-46.462,-0.25655,0.94573,-0.19944,94.504,-0.046469,0.19404,0.97989,-33.116
    9809 
    9810 > select add #47
    9811 
    9812 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9813 
    9814 > select subtract #48
    9815 
    9816 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9817 
    9818 > view matrix models
    9819 > #47,0.97604,0.21491,-0.034173,-34.595,-0.21559,0.93359,-0.28625,60.64,-0.029615,0.28676,0.95755,-52.102
    9820 
    9821 > select add #49
    9822 
    9823 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9824 
    9825 > select subtract #47
    9826 
    9827 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9828 
    9829 > ui mousemode right "translate selected models"
    9830 
    9831 > view matrix models
    9832 > #49,0.93591,0.34986,-0.040852,-58.467,-0.34738,0.89761,-0.27133,65.351,-0.058256,0.26813,0.96162,-42.07
    9833 
    9834 > view matrix models
    9835 > #49,0.93591,0.34986,-0.040852,-58.672,-0.34738,0.89761,-0.27133,64.559,-0.058256,0.26813,0.96162,-43.454
    9836 
    9837 > view matrix models
    9838 > #49,0.93591,0.34986,-0.040852,-57.921,-0.34738,0.89761,-0.27133,64.087,-0.058256,0.26813,0.96162,-43.357
    9839 
    9840 > view matrix models
    9841 > #49,0.93591,0.34986,-0.040852,-57.016,-0.34738,0.89761,-0.27133,64.346,-0.058256,0.26813,0.96162,-43.226
    9842 
    9843 > select add #47
    9844 
    9845 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    9846 
    9847 > select subtract #49
    9848 
    9849 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    9850 
    9851 > view matrix models
    9852 > #47,0.97604,0.21491,-0.034173,-34.561,-0.21559,0.93359,-0.28625,60.61,-0.029615,0.28676,0.95755,-52.095
    9853 
    9854 > undo
    9855 
    9856 > ui mousemode right "rotate selected models"
    9857 
    9858 > view matrix models
    9859 > #47,0.95664,0.28616,-0.054367,-42.805,-0.28902,0.90937,-0.29919,83.141,-0.036176,0.30193,0.95264,-53.252
    9860 
    9861 > view matrix models
    9862 > #47,0.96899,0.22331,-0.10579,-20.346,-0.2467,0.8497,-0.46599,122.83,-0.014167,0.47764,0.87844,-82.101
    9863 
    9864 > undo
    9865 
    9866 > view matrix models
    9867 > #47,0.9496,0.30788,-0.058949,-45.412,-0.31215,0.91148,-0.26791,80.723,-0.028752,0.27281,0.96164,-49.95
    9868 
    9869 > view matrix models
    9870 > #47,0.94779,0.31415,-0.054815,-47.335,-0.31764,0.9147,-0.24985,77.338,-0.028352,0.25422,0.96673,-46.862
    9871 
    9872 > ui mousemode right "translate selected models"
    9873 
    9874 > view matrix models
    9875 > #47,0.94779,0.31415,-0.054815,-48.454,-0.31764,0.9147,-0.24985,77.697,-0.028352,0.25422,0.96673,-47.174
    9876 
    9877 > view matrix models
    9878 > #47,0.94779,0.31415,-0.054815,-47.818,-0.31764,0.9147,-0.24985,78.325,-0.028352,0.25422,0.96673,-46.815
    9879 
    9880 > ui mousemode right "rotate selected models"
    9881 
    9882 > view matrix models
    9883 > #47,0.92658,0.36944,-0.070398,-53.007,-0.37407,0.8859,-0.27434,100.93,-0.038986,0.28053,0.95905,-49.123
    9884 
    9885 > view matrix models
    9886 > #47,0.94208,0.29841,-0.15308,-22.856,-0.33442,0.87035,-0.36146,114.69,0.025372,0.39172,0.91973,-78.802
    9887 
    9888 > ui mousemode right "translate selected models"
    9889 
    9890 > view matrix models
    9891 > #47,0.94208,0.29841,-0.15308,-22.507,-0.33442,0.87035,-0.36146,114.68,0.025372,0.39172,0.91973,-79.867
    9892 
    9893 > ui mousemode right "rotate selected models"
    9894 
    9895 > view matrix models
    9896 > #47,0.93313,0.33363,-0.13399,-32.69,-0.35833,0.89345,-0.27082,95.408,0.02936,0.30073,0.95326,-66.919
    9897 
    9898 > view matrix models
    9899 > #47,0.93573,0.32385,-0.13977,-29.787,-0.35161,0.88786,-0.29679,100.72,0.027978,0.32685,0.94466,-70.803
    9900 
    9901 > ui mousemode right "translate selected models"
    9902 
    9903 > view matrix models
    9904 > #47,0.93573,0.32385,-0.13977,-29.695,-0.35161,0.88786,-0.29679,100.87,0.027978,0.32685,0.94466,-70.949
    9905 
    9906 > view matrix models
    9907 > #47,0.93573,0.32385,-0.13977,-28.817,-0.35161,0.88786,-0.29679,101.08,0.027978,0.32685,0.94466,-70.581
    9908 
    9909 > view matrix models
    9910 > #47,0.93573,0.32385,-0.13977,-28.423,-0.35161,0.88786,-0.29679,100.74,0.027978,0.32685,0.94466,-70.43
    9911 
    9912 > ui mousemode right "rotate selected models"
    9913 
    9914 > view matrix models
    9915 > #47,0.93703,0.32058,-0.1386,-28.175,-0.34848,0.88474,-0.30952,103.46,0.023399,0.33833,0.94074,-71.329
    9916 
    9917 > view matrix models
    9918 > #47,0.92464,0.38034,-0.019844,-63.817,-0.36712,0.87621,-0.31223,109.59,-0.10137,0.29598,0.9498,-39.234
    9919 
    9920 > view matrix models
    9921 > #47,0.89452,0.44697,-0.0071838,-75.667,-0.42302,0.84116,-0.33692,133.55,-0.14455,0.30442,0.94151,-31.005
    9922 
    9923 > view matrix models
    9924 > #47,0.88761,0.4605,-0.0089611,-77.021,-0.4421,0.84638,-0.29696,127.85,-0.12917,0.26755,0.95485,-28.397
    9925 
    9926 > view matrix models
    9927 > #47,0.8814,0.46217,0.097591,-98.174,-0.41826,0.85962,-0.29344,119.46,-0.21951,0.21782,0.95098,1.3208
    9928 
    9929 > ui mousemode right "translate selected models"
    9930 
    9931 > view matrix models
    9932 > #47,0.8814,0.46217,0.097591,-98.508,-0.41826,0.85962,-0.29344,119.52,-0.21951,0.21782,0.95098,2.3605
    9933 
    9934 > ui mousemode right "rotate selected models"
    9935 
    9936 > view matrix models
    9937 > #47,0.96618,0.22264,0.13011,-67.426,-0.18919,0.95486,-0.22901,39.896,-0.17522,0.19665,0.96469,-4.3125
    9938 
    9939 > color #50 black
    9940 
    9941 > undo
    9942 
    9943 [Repeated 1 time(s)]
    9944 
    9945 > ui mousemode right "translate selected models"
    9946 
    9947 > view matrix models
    9948 > #47,0.96618,0.22264,0.13011,-67.817,-0.18919,0.95486,-0.22901,35.945,-0.17522,0.19665,0.96469,-4.2705
    9949 
    9950 > ui mousemode right "rotate selected models"
    9951 
    9952 > view matrix models
    9953 > #47,0.93167,0.35238,0.088445,-81.918,-0.32096,0.91236,-0.25414,76.496,-0.17025,0.20838,0.96312,-7.5783
    9954 
    9955 > ui mousemode right "translate selected models"
    9956 
    9957 > view matrix models
    9958 > #47,0.93167,0.35238,0.088445,-81.571,-0.32096,0.91236,-0.25414,77.426,-0.17025,0.20838,0.96312,-7.3369
    9959 
    9960 > hide #!8 models
    9961 
    9962 > select clear
    9963 
    9964 > hide #!14 models
    9965 
    9966 > show #!14 models
    9967 
    9968 > select add #14
    9969 
    9970 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    9971 
    9972 > ui mousemode right "translate selected models"
    9973 
    9974 > select add #13
    9975 
    9976 547 atoms, 545 bonds, 2 pseudobonds, 37 residues, 4 models selected 
    9977 
    9978 > show #!8 models
    9979 
    9980 > view matrix models
    9981 > #13,0.93679,0.34915,0.022882,-68.6,-0.34379,0.93062,-0.12551,75.552,-0.065117,0.10971,0.99183,-11.297,#14,0.87715,0.42217,-0.22889,-23.422,-0.28741,0.84334,0.45405,-28.728,0.38472,-0.33249,0.86107,25.034
    9982 
    9983 > ui mousemode right "rotate selected models"
    9984 
    9985 > view matrix models
    9986 > #13,0.94055,0.33914,0.018883,-66.358,-0.33166,0.92894,-0.16454,81.136,-0.073345,0.1485,0.98619,-17.116,#14,0.87795,0.41538,-0.23803,-20.322,-0.29377,0.86001,0.41724,-24.051,0.37802,-0.29639,0.87707,15.311
    9987 
    9988 > ui mousemode right "translate selected models"
    9989 
    9990 > view matrix models
    9991 > #13,0.94055,0.33914,0.018883,-66.181,-0.33166,0.92894,-0.16454,80.618,-0.073345,0.1485,0.98619,-18.105,#14,0.87795,0.41538,-0.23803,-20.145,-0.29377,0.86001,0.41724,-24.569,0.37802,-0.29639,0.87707,14.322
    9992 
    9993 > view matrix models
    9994 > #13,0.94055,0.33914,0.018883,-66.091,-0.33166,0.92894,-0.16454,81.081,-0.073345,0.1485,0.98619,-18.279,#14,0.87795,0.41538,-0.23803,-20.054,-0.29377,0.86001,0.41724,-24.106,0.37802,-0.29639,0.87707,14.147
    9995 
    9996 > view matrix models
    9997 > #13,0.94055,0.33914,0.018883,-65.998,-0.33166,0.92894,-0.16454,81.173,-0.073345,0.1485,0.98619,-18.259,#14,0.87795,0.41538,-0.23803,-19.962,-0.29377,0.86001,0.41724,-24.015,0.37802,-0.29639,0.87707,14.168
    9998 
    9999 > ui mousemode right "rotate selected models"
    10000 
    10001 > select subtract #14
    10002 
    10003 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    10004 
    10005 > view matrix models
    10006 > #13,0.83464,0.55052,-0.017495,-88.69,-0.54158,0.81448,-0.20811,159.23,-0.10032,0.18317,0.97795,-19.619
    10007 
    10008 > ui mousemode right "translate selected models"
    10009 
    10010 [Repeated 1 time(s)]
    10011 
    10012 > view matrix models
    10013 > #13,0.83464,0.55052,-0.017495,-87.144,-0.54158,0.81448,-0.20811,160.2,-0.10032,0.18317,0.97795,-19.3
    10014 
    10015 > view matrix models
    10016 > #13,0.83464,0.55052,-0.017495,-85.093,-0.54158,0.81448,-0.20811,160.46,-0.10032,0.18317,0.97795,-19.327
    10017 
    10018 > ui mousemode right "rotate selected models"
    10019 
    10020 > view matrix models
    10021 > #13,0.79314,0.60856,-0.024242,-89.469,-0.59978,0.77354,-0.20468,181.31,-0.10581,0.17688,0.97853,-16.825
    10022 
    10023 > ui mousemode right "translate selected models"
    10024 
    10025 > view matrix models
    10026 > #13,0.79314,0.60856,-0.024242,-89.873,-0.59978,0.77354,-0.20468,180.68,-0.10581,0.17688,0.97853,-15.513
    10027 
    10028 > view matrix models
    10029 > #13,0.79314,0.60856,-0.024242,-90.259,-0.59978,0.77354,-0.20468,180.97,-0.10581,0.17688,0.97853,-15.349
    10030 
    10031 > select add #14
    10032 
    10033 547 atoms, 545 bonds, 2 pseudobonds, 37 residues, 4 models selected 
    10034 
    10035 > select subtract #13
    10036 
    10037 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    10038 
    10039 > ui mousemode right "rotate selected models"
    10040 
    10041 > view matrix models
    10042 > #14,0.87549,0.41224,-0.25213,-16.11,-0.30018,0.87284,0.38477,-19.317,0.37869,-0.26118,0.88791,4.3902
    10043 
    10044 > select clear
    10045 
    10046 > combine #13,14,15,17,18
    10047 
    10048 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    10049 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    10050 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    10051 
    10052 > hide #!47 models
    10053 
    10054 > hide #!48 models
    10055 
    10056 > hide #!49 models
    10057 
    10058 > hide #!50 models
    10059 
    10060 > hide #!51 models
    10061 
    10062 > show #!51 models
    10063 
    10064 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10065 > MRCLaboratoryofMolecularBiology/Documents/Carter
    10066 > Lab/Diorge/Membranes/Fit14-9.cxs"
    10067 
    10068 > combine #13,14,15,17,18
    10069 
    10070 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    10071 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    10072 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    10073 
    10074 > hide #!51 models
    10075 
    10076 > show #!51 models
    10077 
    10078 > combine #13,14,15,17,18
    10079 
    10080 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    10081 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    10082 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    10083 
    10084 > combine #13,14,15,17,18
    10085 
    10086 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    10087 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    10088 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    10089 
    10090 > show #!48 models
    10091 
    10092 > mmaker #51/8 to #48/8
    10093 
    10094 Parameters 
    10095 --- 
    10096 Chain pairing | bb 
    10097 Alignment algorithm | Needleman-Wunsch 
    10098 Similarity matrix | BLOSUM-62 
    10099 SS fraction | 0.3 
    10100 Gap open (HH/SS/other) | 18/18/6 
    10101 Gap extend | 1 
    10102 SS matrix |  |  | H | S | O 
    10103 ---|---|---|--- 
    10104 H | 6 | -9 | -6 
    10105 S |  | 6 | -6 
    10106 O |  |  | 4 
    10107 Iteration cutoff | 2 
    10108  
    10109 Matchmaker combination, chain 8 (#48) with combination, chain 8 (#51),
    10110 sequence alignment score = 674.3 
    10111 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    10112 0.000) 
    10113  
    10114 
    10115 > color #51 #00fdffff
    10116 
    10117 > color #52 #73fa79ff
    10118 
    10119 > color #53 #fffc79ff
    10120 
    10121 > color #54 #531b93ff
    10122 
    10123 > mmaker #51/8 to #47/8
    10124 
    10125 Parameters 
    10126 --- 
    10127 Chain pairing | bb 
    10128 Alignment algorithm | Needleman-Wunsch 
    10129 Similarity matrix | BLOSUM-62 
    10130 SS fraction | 0.3 
    10131 Gap open (HH/SS/other) | 18/18/6 
    10132 Gap extend | 1 
    10133 SS matrix |  |  | H | S | O 
    10134 ---|---|---|--- 
    10135 H | 6 | -9 | -6 
    10136 S |  | 6 | -6 
    10137 O |  |  | 4 
    10138 Iteration cutoff | 2 
    10139  
    10140 Matchmaker combination, chain 8 (#47) with combination, chain 8 (#51),
    10141 sequence alignment score = 674.3 
    10142 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    10143 0.000) 
    10144  
    10145 
    10146 > mmaker #52/8 to #48/8
    10147 
    10148 Parameters 
    10149 --- 
    10150 Chain pairing | bb 
    10151 Alignment algorithm | Needleman-Wunsch 
    10152 Similarity matrix | BLOSUM-62 
    10153 SS fraction | 0.3 
    10154 Gap open (HH/SS/other) | 18/18/6 
    10155 Gap extend | 1 
    10156 SS matrix |  |  | H | S | O 
    10157 ---|---|---|--- 
    10158 H | 6 | -9 | -6 
    10159 S |  | 6 | -6 
    10160 O |  |  | 4 
    10161 Iteration cutoff | 2 
    10162  
    10163 Matchmaker combination, chain 8 (#48) with combination, chain 8 (#52),
    10164 sequence alignment score = 674.3 
    10165 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    10166 0.000) 
    10167  
    10168 
    10169 > mmaker #53/8 to #49/8
    10170 
    10171 Parameters 
    10172 --- 
    10173 Chain pairing | bb 
    10174 Alignment algorithm | Needleman-Wunsch 
    10175 Similarity matrix | BLOSUM-62 
    10176 SS fraction | 0.3 
    10177 Gap open (HH/SS/other) | 18/18/6 
    10178 Gap extend | 1 
    10179 SS matrix |  |  | H | S | O 
    10180 ---|---|---|--- 
    10181 H | 6 | -9 | -6 
    10182 S |  | 6 | -6 
    10183 O |  |  | 4 
    10184 Iteration cutoff | 2 
    10185  
    10186 Matchmaker combination, chain 8 (#49) with combination, chain 8 (#53),
    10187 sequence alignment score = 674.3 
    10188 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    10189 0.000) 
    10190  
    10191 
    10192 > mmaker #54/8 to #50/8
    10193 
    10194 Parameters 
    10195 --- 
    10196 Chain pairing | bb 
    10197 Alignment algorithm | Needleman-Wunsch 
    10198 Similarity matrix | BLOSUM-62 
    10199 SS fraction | 0.3 
    10200 Gap open (HH/SS/other) | 18/18/6 
    10201 Gap extend | 1 
    10202 SS matrix |  |  | H | S | O 
    10203 ---|---|---|--- 
    10204 H | 6 | -9 | -6 
    10205 S |  | 6 | -6 
    10206 O |  |  | 4 
    10207 Iteration cutoff | 2 
    10208  
    10209 Matchmaker combination, chain 8 (#50) with combination, chain 8 (#54),
    10210 sequence alignment score = 674.3 
    10211 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    10212 0.000) 
    10213  
    10214 
    10215 > hide #!48 models
    10216 
    10217 > select add #53
    10218 
    10219 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10220 
    10221 > ui mousemode right "translate selected models"
    10222 
    10223 > view matrix models
    10224 > #53,0.79283,0.60309,-0.08775,-79.524,-0.59187,0.72762,-0.34679,168.81,-0.1453,0.32688,0.93383,-31.228
    10225 
    10226 > view matrix models
    10227 > #53,0.79283,0.60309,-0.08775,-81.065,-0.59187,0.72762,-0.34679,168.68,-0.1453,0.32688,0.93383,-31.509
    10228 
    10229 > ui mousemode right "rotate selected models"
    10230 
    10231 > view matrix models
    10232 > #53,0.78882,0.60994,-0.075722,-84.265,-0.60698,0.75369,-0.25204,146.43,-0.096659,0.24478,0.96475,-29.141
    10233 
    10234 > view matrix models
    10235 > #53,0.78803,0.61129,-0.073005,-84.967,-0.60962,0.75827,-0.23107,141.63,-0.085894,0.2266,0.97019,-28.329
    10236 
    10237 > view matrix models
    10238 > #53,0.77904,0.62492,-0.050785,-90.782,-0.62212,0.7604,-0.18641,134.48,-0.077876,0.17682,0.98116,-21.046
    10239 
    10240 > ui mousemode right "translate selected models"
    10241 
    10242 > view matrix models
    10243 > #53,0.77904,0.62492,-0.050785,-91.248,-0.62212,0.7604,-0.18641,136.03,-0.077876,0.17682,0.98116,-20.96
    10244 
    10245 > view matrix models
    10246 > #53,0.77904,0.62492,-0.050785,-91.128,-0.62212,0.7604,-0.18641,136.1,-0.077876,0.17682,0.98116,-21.661
    10247 
    10248 > select add #51
    10249 
    10250 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    10251 
    10252 > select subtract #53
    10253 
    10254 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10255 
    10256 > view matrix models
    10257 > #51,0.78654,0.61619,0.040823,-106.01,-0.57112,0.75097,-0.33145,182.99,-0.23489,0.23738,0.94259,3.8618
    10258 
    10259 > view matrix models
    10260 > #51,0.78654,0.61619,0.040823,-105.91,-0.57112,0.75097,-0.33145,182.99,-0.23489,0.23738,0.94259,3.5573
    10261 
    10262 > select clear
    10263 
    10264 > select add #54
    10265 
    10266 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10267 
    10268 > ui mousemode right "rotate selected models"
    10269 
    10270 > view matrix models
    10271 > #54,0.84403,0.53603,-0.017022,-88.104,-0.50918,0.79099,-0.33922,231.58,-0.16837,0.29498,0.94055,-22.126
    10272 
    10273 > ui mousemode right "translate selected models"
    10274 
    10275 > view matrix models
    10276 > #54,0.84403,0.53603,-0.017022,-87.786,-0.50918,0.79099,-0.33922,232.2,-0.16837,0.29498,0.94055,-23.324
    10277 
    10278 > view matrix models
    10279 > #54,0.84403,0.53603,-0.017022,-87.749,-0.50918,0.79099,-0.33922,232.43,-0.16837,0.29498,0.94055,-23.375
    10280 
    10281 > view matrix models
    10282 > #54,0.84403,0.53603,-0.017022,-86.705,-0.50918,0.79099,-0.33922,235.08,-0.16837,0.29498,0.94055,-22.186
    10283 
    10284 > view matrix models
    10285 > #54,0.84403,0.53603,-0.017022,-85.367,-0.50918,0.79099,-0.33922,233.14,-0.16837,0.29498,0.94055,-21.896
    10286 
    10287 > select clear
    10288 
    10289 > select add #52
    10290 
    10291 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10292 
    10293 > ui mousemode right "rotate selected models"
    10294 
    10295 > view matrix models
    10296 > #52,0.8393,0.54154,-0.048038,-79.217,-0.53135,0.79838,-0.2833,201.22,-0.11506,0.2633,0.95783,-30.286
    10297 
    10298 > select add #51
    10299 
    10300 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    10301 
    10302 > select subtract #52
    10303 
    10304 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10305 
    10306 > view matrix models
    10307 > #51,0.78362,0.62062,-0.027806,-92.259,-0.59428,0.73582,-0.32467,189.57,-0.18103,0.27094,0.94542,-15.186
    10308 
    10309 > select clear
    10310 
    10311 > select add #53
    10312 
    10313 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10314 
    10315 > ui mousemode right "rotate selected models"
    10316 
    10317 > view matrix models
    10318 > #53,0.78778,0.61405,-0.048461,-90.908,-0.6044,0.75543,-0.25303,147.35,-0.11876,0.22862,0.96624,-22.076
    10319 
    10320 > select add #51
    10321 
    10322 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    10323 
    10324 > view matrix models
    10325 > #51,0.78688,0.61561,-0.042924,-88.697,-0.59375,0.73633,-0.32445,189.31,-0.16813,0.28079,0.94493,-19.813,#53,0.79004,0.60971,-0.063966,-87.204,-0.60386,0.75593,-0.25283,147.09,-0.1058,0.23837,0.96539,-26.67
    10326 
    10327 > undo
    10328 
    10329 > ui mousemode right "translate selected models"
    10330 
    10331 > view matrix models
    10332 > #51,0.78362,0.62062,-0.027806,-92.47,-0.59428,0.73582,-0.32467,189.61,-0.18103,0.27094,0.94542,-14.385,#53,0.78778,0.61405,-0.048461,-91.119,-0.6044,0.75543,-0.25303,147.39,-0.11876,0.22862,0.96624,-21.276
    10333 
    10334 > undo
    10335 
    10336 > select clear
    10337 
    10338 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10339 > MRCLaboratoryofMolecularBiology/Documents/Carter
    10340 > Lab/Diorge/Membranes/Fit14-9.cxs"
    10341 
    10342 > select add #51
    10343 
    10344 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10345 
    10346 > ui mousemode right "rotate selected models"
    10347 
    10348 [Repeated 1 time(s)]
    10349 
    10350 > view matrix models
    10351 > #51,0.7749,0.63074,-0.041243,-90.038,-0.62069,0.74697,-0.23828,174.61,-0.11948,0.21024,0.97032,-18.923
    10352 
    10353 > view matrix models
    10354 > #51,0.7717,0.63474,-0.039902,-90.572,-0.62828,0.75111,-0.20273,167.91,-0.09871,0.18152,0.97842,-18.282
    10355 
    10356 > ui mousemode right "translate selected models"
    10357 
    10358 > view matrix models
    10359 > #51,0.7717,0.63474,-0.039902,-90.685,-0.62828,0.75111,-0.20273,168.04,-0.09871,0.18152,0.97842,-17.341
    10360 
    10361 > select add #53
    10362 
    10363 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    10364 
    10365 > select subtract #51
    10366 
    10367 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10368 
    10369 > ui mousemode right "rotate selected models"
    10370 
    10371 [Repeated 1 time(s)]
    10372 
    10373 > view matrix models
    10374 > #53,0.77177,0.63318,-0.058665,-89.92,-0.63332,0.75707,-0.1605,133.75,-0.057213,0.16102,0.98529,-23.073
    10375 
    10376 > ui mousemode right "translate selected models"
    10377 
    10378 > view matrix models
    10379 > #53,0.77177,0.63318,-0.058665,-90.403,-0.63332,0.75707,-0.1605,134,-0.057213,0.16102,0.98529,-21.421
    10380 
    10381 > ui mousemode right "rotate selected models"
    10382 
    10383 > view matrix models
    10384 > #53,0.76959,0.63614,-0.055379,-91.303,-0.63797,0.76235,-0.10868,123.12,-0.026917,0.11897,0.99253,-19.513
    10385 
    10386 > ui mousemode right "translate selected models"
    10387 
    10388 > view matrix models
    10389 > #53,0.76959,0.63614,-0.055379,-91.41,-0.63797,0.76235,-0.10868,121.99,-0.026917,0.11897,0.99253,-19.441
    10390 
    10391 > view matrix models
    10392 > #53,0.76959,0.63614,-0.055379,-91.955,-0.63797,0.76235,-0.10868,121.83,-0.026917,0.11897,0.99253,-18.306
    10393 
    10394 > ui mousemode right "rotate selected models"
    10395 
    10396 > view matrix models
    10397 > #53,0.73827,0.67177,-0.060608,-92.641,-0.67365,0.72985,-0.11628,137.71,-0.033877,0.12667,0.99137,-18.409
    10398 
    10399 > select add #51
    10400 
    10401 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    10402 
    10403 > select subtract #53
    10404 
    10405 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10406 
    10407 > ui mousemode right "translate selected models"
    10408 
    10409 > view matrix models
    10410 > #51,0.7717,0.63474,-0.039902,-91.085,-0.62828,0.75111,-0.20273,168.46,-0.09871,0.18152,0.97842,-16.003
    10411 
    10412 > view matrix models
    10413 > #51,0.7717,0.63474,-0.039902,-91.07,-0.62828,0.75111,-0.20273,168.34,-0.09871,0.18152,0.97842,-16.324
    10414 
    10415 > view matrix models
    10416 > #51,0.7717,0.63474,-0.039902,-91.467,-0.62828,0.75111,-0.20273,168.14,-0.09871,0.18152,0.97842,-16.415
    10417 
    10418 > view matrix models
    10419 > #51,0.7717,0.63474,-0.039902,-91.445,-0.62828,0.75111,-0.20273,167.89,-0.09871,0.18152,0.97842,-16.415
    10420 
    10421 > view matrix models
    10422 > #51,0.7717,0.63474,-0.039902,-91.668,-0.62828,0.75111,-0.20273,167.4,-0.09871,0.18152,0.97842,-16.374
    10423 
    10424 > view matrix models
    10425 > #51,0.7717,0.63474,-0.039902,-91.369,-0.62828,0.75111,-0.20273,167.29,-0.09871,0.18152,0.97842,-17.414
    10426 
    10427 > select add #53
    10428 
    10429 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    10430 
    10431 > select subtract #53
    10432 
    10433 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10434 
    10435 > select subtract #51
    10436 
    10437 Nothing selected 
    10438 
    10439 > select add #52
    10440 
    10441 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10442 
    10443 > ui mousemode right "rotate selected models"
    10444 
    10445 > view matrix models
    10446 > #52,0.84464,0.53263,-0.053674,-77.131,-0.51956,0.79146,-0.32194,208.35,-0.129,0.29981,0.94524,-33.101
    10447 
    10448 > ui mousemode right "translate selected models"
    10449 
    10450 > view matrix models
    10451 > #52,0.84464,0.53263,-0.053674,-77.116,-0.51956,0.79146,-0.32194,209.44,-0.129,0.29981,0.94524,-32.04
    10452 
    10453 > view matrix models
    10454 > #52,0.84464,0.53263,-0.053674,-77.078,-0.51956,0.79146,-0.32194,209.49,-0.129,0.29981,0.94524,-32.182
    10455 
    10456 > ui mousemode right "rotate selected models"
    10457 
    10458 > view matrix models
    10459 > #52,0.8218,0.56821,-0.042205,-82.85,-0.55789,0.78739,-0.26225,205.76,-0.11578,0.23906,0.96408,-25.092
    10460 
    10461 > ui mousemode right "translate selected models"
    10462 
    10463 > view matrix models
    10464 > #52,0.8218,0.56821,-0.042205,-82.336,-0.55789,0.78739,-0.26225,204.3,-0.11578,0.23906,0.96408,-24.894
    10465 
    10466 > select clear
    10467 
    10468 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10469 > MRCLaboratoryofMolecularBiology/Documents/Carter
    10470 > Lab/Diorge/Membranes/Fit14-9.cxs"
    10471 
    10472 > select add #53
    10473 
    10474 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10475 
    10476 > ui mousemode right "rotate selected models"
    10477 
    10478 > view matrix models
    10479 > #53,0.63932,0.76516,-0.076185,-90.706,-0.76749,0.62891,-0.12417,180.46,-0.047097,0.13786,0.98933,-17.871
    10480 
    10481 > ui mousemode right "translate selected models"
    10482 
    10483 > view matrix models
    10484 > #53,0.63932,0.76516,-0.076185,-90.392,-0.76749,0.62891,-0.12417,182.2,-0.047097,0.13786,0.98933,-17.82
    10485 
    10486 > ui mousemode right "rotate selected models"
    10487 
    10488 > view matrix models
    10489 > #53,0.66408,0.74537,-0.058529,-94.494,-0.73758,0.6403,-0.21447,192.24,-0.12238,0.1856,0.97497,-10.627
    10490 
    10491 > ui mousemode right "translate selected models"
    10492 
    10493 > view matrix models
    10494 > #53,0.66408,0.74537,-0.058529,-93.992,-0.73758,0.6403,-0.21447,192.56,-0.12238,0.1856,0.97497,-12.054
    10495 
    10496 > view matrix models
    10497 > #53,0.66408,0.74537,-0.058529,-94.121,-0.73758,0.6403,-0.21447,192.83,-0.12238,0.1856,0.97497,-11.702
    10498 
    10499 > ui mousemode right "rotate selected models"
    10500 
    10501 > view matrix models
    10502 > #53,0.72318,0.68947,-0.040528,-97.031,-0.68114,0.70227,-0.20701,166.28,-0.11427,0.17731,0.9775,-11.977
    10503 
    10504 > view matrix models
    10505 > #53,0.72381,0.6884,-0.046968,-95.597,-0.68158,0.70272,-0.20404,165.66,-0.10746,0.1797,0.97783,-13.928
    10506 
    10507 > select add #51
    10508 
    10509 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    10510 
    10511 > ui mousemode right "translate selected models"
    10512 
    10513 > view matrix models
    10514 > #51,0.7717,0.63474,-0.039902,-91.646,-0.62828,0.75111,-0.20273,168.71,-0.09871,0.18152,0.97842,-17.526,#53,0.72381,0.6884,-0.046968,-95.874,-0.68158,0.70272,-0.20404,167.08,-0.10746,0.1797,0.97783,-14.041
    10515 
    10516 > view matrix models
    10517 > #51,0.7717,0.63474,-0.039902,-91.638,-0.62828,0.75111,-0.20273,168.71,-0.09871,0.18152,0.97842,-17.658,#53,0.72381,0.6884,-0.046968,-95.866,-0.68158,0.70272,-0.20404,167.08,-0.10746,0.1797,0.97783,-14.173
    10518 
    10519 > select clear
    10520 
    10521 > select add #52
    10522 
    10523 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10524 
    10525 > ui mousemode right "rotate selected models"
    10526 
    10527 [Repeated 1 time(s)]
    10528 
    10529 > view matrix models
    10530 > #52,0.80921,0.58739,-0.012201,-90.275,-0.56858,0.77773,-0.26807,209.77,-0.14797,0.22386,0.96332,-14.968
    10531 
    10532 > view matrix models
    10533 > #52,0.82047,0.57127,-0.022086,-86.878,-0.55597,0.78831,-0.26356,203.98,-0.13315,0.22852,0.96439,-19.163
    10534 
    10535 > select clear
    10536 
    10537 > select add #53
    10538 
    10539 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10540 
    10541 > view matrix models
    10542 > #53,0.70954,0.70282,-0.050936,-95.447,-0.69516,0.6863,-0.21386,175.45,-0.11535,0.18715,0.97553,-13.803
    10543 
    10544 > view matrix models
    10545 > #53,0.74331,0.65729,-0.12432,-76.929,-0.66139,0.69426,-0.28384,181.32,-0.10025,0.2932,0.95078,-35.406
    10546 
    10547 > view matrix models
    10548 > #53,0.74955,0.65065,-0.12181,-77.194,-0.65484,0.70192,-0.28018,177.57,-0.096794,0.28977,0.95219,-35.614
    10549 
    10550 > view matrix models
    10551 > #53,0.74392,0.66067,-0.10051,-82.683,-0.6641,0.71411,-0.22138,164.63,-0.074488,0.23144,0.96999,-30.652
    10552 
    10553 > ui mousemode right "translate selected models"
    10554 
    10555 > view matrix models
    10556 > #53,0.74392,0.66067,-0.10051,-82.889,-0.6641,0.71411,-0.22138,163.71,-0.074488,0.23144,0.96999,-31.095
    10557 
    10558 > view matrix models
    10559 > #53,0.74392,0.66067,-0.10051,-82.439,-0.6641,0.71411,-0.22138,163.69,-0.074488,0.23144,0.96999,-32.785
    10560 
    10561 > view matrix models
    10562 > #53,0.74392,0.66067,-0.10051,-82.332,-0.6641,0.71411,-0.22138,163.66,-0.074488,0.23144,0.96999,-33.089
    10563 
    10564 > view matrix models
    10565 > #53,0.74392,0.66067,-0.10051,-82.667,-0.6641,0.71411,-0.22138,163.8,-0.074488,0.23144,0.96999,-33.79
    10566 
    10567 > ui mousemode right "rotate selected models"
    10568 
    10569 > view matrix models
    10570 > #53,0.74361,0.6622,-0.092393,-84.611,-0.6635,0.71378,-0.22425,164.35,-0.082551,0.22806,0.97014,-31.468
    10571 
    10572 > view matrix models
    10573 > #53,0.72006,0.68669,-0.099875,-83.882,-0.68842,0.68885,-0.22707,175.43,-0.08713,0.23226,0.96874,-31.213
    10574 
    10575 > ui mousemode right "translate selected models"
    10576 
    10577 > view matrix models
    10578 > #53,0.72006,0.68669,-0.099875,-84.679,-0.68842,0.68885,-0.22707,176.37,-0.08713,0.23226,0.96874,-31.349
    10579 
    10580 > select add #54
    10581 
    10582 5168 atoms, 5164 bonds, 6 pseudobonds, 332 residues, 4 models selected 
    10583 
    10584 > select subtract #53
    10585 
    10586 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10587 
    10588 > ui mousemode right "rotate selected models"
    10589 
    10590 > view matrix models
    10591 > #54,0.86908,0.49464,-0.0054776,-83.451,-0.46886,0.82015,-0.32791,216.32,-0.1577,0.28755,0.94469,-23.198
    10592 
    10593 > ui mousemode right "translate selected models"
    10594 
    10595 > view matrix models
    10596 > #54,0.86908,0.49464,-0.0054776,-84.839,-0.46886,0.82015,-0.32791,215.37,-0.1577,0.28755,0.94469,-23.484
    10597 
    10598 > ui mousemode right "rotate selected models"
    10599 
    10600 > view matrix models
    10601 > #54,0.84439,0.53513,-0.025307,-84.929,-0.50917,0.78694,-0.34852,235,-0.16659,0.30717,0.93696,-24.522
    10602 
    10603 > view matrix models
    10604 > #54,0.83139,0.55516,0.024278,-96.989,-0.51209,0.78239,-0.35445,237.81,-0.21577,0.28225,0.93476,-8.7632
    10605 
    10606 > select clear
    10607 
    10608 > select add #54
    10609 
    10610 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10611 
    10612 > ui mousemode right "translate selected models"
    10613 
    10614 > view matrix models
    10615 > #54,0.83139,0.55516,0.024278,-95.442,-0.51209,0.78239,-0.35445,238.02,-0.21577,0.28225,0.93476,-8.4907
    10616 
    10617 > view matrix models
    10618 > #54,0.83139,0.55516,0.024278,-94.586,-0.51209,0.78239,-0.35445,238.3,-0.21577,0.28225,0.93476,-8.3168
    10619 
    10620 > ui mousemode right "rotate selected models"
    10621 
    10622 > view matrix models
    10623 > #54,0.84979,0.52598,0.03465,-93.839,-0.48339,0.80381,-0.34673,226.24,-0.21023,0.2779,0.93733,-8.9685
    10624 
    10625 > ui mousemode right "translate selected models"
    10626 
    10627 > view matrix models
    10628 > #54,0.84979,0.52598,0.03465,-92.67,-0.48339,0.80381,-0.34673,225.8,-0.21023,0.2779,0.93733,-8.7668
    10629 
    10630 > view matrix models
    10631 > #54,0.84979,0.52598,0.03465,-92.351,-0.48339,0.80381,-0.34673,225.88,-0.21023,0.2779,0.93733,-8.2537
    10632 
    10633 > select clear
    10634 
    10635 > hide #!8 models
    10636 
    10637 > select add #53
    10638 
    10639 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10640 
    10641 > view matrix models
    10642 > #53,0.72006,0.68669,-0.099875,-84.703,-0.68842,0.68885,-0.22707,176.39,-0.08713,0.23226,0.96874,-30.805
    10643 
    10644 > view matrix models
    10645 > #53,0.72006,0.68669,-0.099875,-84.843,-0.68842,0.68885,-0.22707,176.53,-0.08713,0.23226,0.96874,-29.141
    10646 
    10647 > select subtract #53
    10648 
    10649 Nothing selected 
    10650 
    10651 > show #!8 models
    10652 
    10653 > select add #53
    10654 
    10655 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    10656 
    10657 > ui mousemode right "rotate selected models"
    10658 
    10659 > view matrix models
    10660 > #53,0.72198,0.68668,-0.084993,-88.27,-0.68885,0.70177,-0.18169,164.43,-0.065116,0.18972,0.97968,-26.241
    10661 
    10662 > ui mousemode right "translate selected models"
    10663 
    10664 > view matrix models
    10665 > #53,0.72198,0.68668,-0.084993,-88.505,-0.68885,0.70177,-0.18169,163.29,-0.065116,0.18972,0.97968,-25.02
    10666 
    10667 > view matrix models
    10668 > #53,0.72198,0.68668,-0.084993,-88.436,-0.68885,0.70177,-0.18169,163.3,-0.065116,0.18972,0.97968,-25.18
    10669 
    10670 > view matrix models
    10671 > #53,0.72198,0.68668,-0.084993,-88.167,-0.68885,0.70177,-0.18169,163.24,-0.065116,0.18972,0.97968,-25.837
    10672 
    10673 > select clear
    10674 
    10675 [Repeated 1 time(s)]
    10676 
    10677 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10678 > MRCLaboratoryofMolecularBiology/Documents/Carter
    10679 > Lab/Diorge/Membranes/Fit14-9.cxs"
    10680 
    10681 > combine #13,14,15,17,18
    10682 
    10683 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    10684 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '7' 
    10685 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '8' 
    10686 
    10687 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10688 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/Membranes/1.pdb"
    10689 > models 53 relModel 8
    10690 
    10691 Invalid "models" argument: invalid models specifier 
    10692 
    10693 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10694 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/Membranes/1.pdb"
    10695 > models 53 relModel 8
    10696 
    10697 Invalid "models" argument: invalid models specifier 
    10698 
    10699 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10700 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/Membranes/1.pdb"
    10701 > models 53 relModel #8
    10702 
    10703 Invalid "models" argument: invalid models specifier 
    10704 
    10705 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10706 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/Membranes/1.pdb"
    10707 > models #53 relModel #8
    10708 
    10709 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10710 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/Membranes/2.pdb"
    10711 > models #51 relModel #8
    10712 
    10713 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10714 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/Membranes/2.pdb"
    10715 > models #55 relModel #8
    10716 
    10717 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10718 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/Membranes/2.pdb"
    10719 > models #51 relModel #8
    10720 
    10721 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10722 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/Membranes/3.pdb"
    10723 > models #55 relModel #8
    10724 
    10725 [Repeated 1 time(s)]
    10726 
    10727 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10728 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/Membranes/4.pdb"
    10729 > models #52 relModel #8
    10730 
    10731 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10732 > MRCLaboratoryofMolecularBiology/Documents/Carter Lab/Diorge/Membranes/5.pdb"
    10733 > models #54 relModel #8
    10734 
    10735 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    10736 > MRCLaboratoryofMolecularBiology/Documents/Carter
    10737 > Lab/Diorge/Membranes/Fit14-9.cxs"
    10738 
    10739 ——— End of log from Mon Jan 8 19:50:54 2024 ———
    10740 
    10741 opened ChimeraX session 
    10742 
    10743 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    10744 > MRCLaboratoryofMolecularBiology/Documents/Carter
    10745 > Lab/Diorge/Membranes/pf1-fit2.pdb"
    10746 
    10747 Chain information for pf1-fit2.pdb #56 
    10748 --- 
    10749 Chain | Description 
    10750 A7 | No description available 
    10751 Ac | No description available 
    10752 Ae | No description available 
    10753 Af | No description available 
    10754 Am | No description available 
    10755 Ao | No description available 
    10756 Ar | No description available 
    10757 Av | No description available 
    10758  
    10759 
    10760 > hide #!13-15,17-18,51-56 atoms
    10761 
    10762 > show #!13-15,17-18,51-56 cartoons
    10763 
    10764 > select add #56
    10765 
    10766 10951 atoms, 10971 bonds, 1 pseudobond, 700 residues, 2 models selected 
    10767 
    10768 > ui mousemode right "translate selected models"
    10769 
    10770 > view matrix models #56,1,0,0,75.213,0,1,0,69.997,0,0,1,35.898
    10771 
    10772 > view matrix models #56,1,0,0,69.231,0,1,0,70.181,0,0,1,63.315
    10773 
    10774 > ui tool show "Fit in Map"
    10775 
    10776 > fitmap #56 inMap #8
    10777 
    10778 Fit molecule pf1-fit2.pdb (#56) to map postprocess_masked330_onepf.mrc (#8)
    10779 using 10951 atoms 
    10780 average map value = 0.0101, steps = 84 
    10781 shifted from previous position = 9.35 
    10782 rotated from previous position = 11.9 degrees 
    10783 atoms outside contour = 7424, contour level = 0.013465 
    10784  
    10785 Position of pf1-fit2.pdb (#56) relative to postprocess_masked330_onepf.mrc
    10786 (#8) coordinates: 
    10787 Matrix rotation and translation 
    10788 0.97925031 -0.20123117 -0.02397601 95.03291912 
    10789 0.20193494 0.97888119 0.03184184 45.67549080 
    10790 0.01706209 -0.03602273 0.99920531 62.48169484 
    10791 Axis -0.16516382 -0.09987550 0.98119611 
    10792 Axis point -191.51308972 525.69665493 0.00000000 
    10793 Rotation angle (degrees) 11.85562312 
    10794 Shift along axis 41.04893332 
    10795  
    10796 
    10797 > hide #!48-55 target m
    10798 
    10799 > hide #!9-21 target m
    10800 
    10801 > select clear
    10802 
    10803 > show #!13 models
    10804 
    10805 > hide #!13 models
    10806 
    10807 > show #!14 models
    10808 
    10809 > show #!15 models
    10810 
    10811 > show #!17 models
    10812 
    10813 > hide #!17 models
    10814 
    10815 > show #!18 models
    10816 
    10817 > select add #18
    10818 
    10819 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    10820 
    10821 > ui mousemode right "translate selected models"
    10822 
    10823 > view matrix models
    10824 > #18,0.97592,-0.21595,-0.030694,51.365,0.21587,0.9764,-0.006095,-12.687,0.031286,-0.00067755,0.99951,-5.4017
    10825 
    10826 > select add #15
    10827 
    10828 1780 atoms, 1778 bonds, 1 pseudobond, 114 residues, 3 models selected 
    10829 
    10830 > select subtract #18
    10831 
    10832 450 atoms, 449 bonds, 30 residues, 1 model selected 
    10833 
    10834 > view matrix models
    10835 > #15,0.96754,0.025808,-0.2514,54.643,-0.054053,0.99289,-0.1061,31.106,0.24688,0.11624,0.96205,-64.627
    10836 
    10837 > hide #!8 models
    10838 
    10839 > show #!16 models
    10840 
    10841 > hide #!16 models
    10842 
    10843 > close #16
    10844 
    10845 > combine #15
    10846 
    10847 > hide #!16 models
    10848 
    10849 > show #!16 models
    10850 
    10851 > hide #!14 models
    10852 
    10853 > hide #!15 models
    10854 
    10855 > hide #!18 models
    10856 
    10857 > hide #!56 models
    10858 
    10859 Drag select of 15 residues 
    10860 
    10861 > delete atoms sel
    10862 
    10863 > delete bonds sel
    10864 
    10865 > show #!15 models
    10866 
    10867 > hide #!16 models
    10868 
    10869 > select #15/6:102
    10870 
    10871 17 atoms, 16 bonds, 1 residue, 1 model selected 
    10872 
    10873 > select add #15/6:103
    10874 
    10875 32 atoms, 30 bonds, 2 residues, 1 model selected 
    10876 Drag select of 13 residues 
    10877 
    10878 > delete atoms sel
    10879 
    10880 > delete bonds sel
    10881 
    10882 > show #!13 models
    10883 
    10884 > show #!14 models
    10885 
    10886 > hide #!14 models
    10887 
    10888 > hide #!13 models
    10889 
    10890 > show #!16 models
    10891 
    10892 > show #!17 models
    10893 
    10894 > hide #!17 models
    10895 
    10896 > show #!14 models
    10897 
    10898 > hide #!14 models
    10899 
    10900 > show #!13 models
    10901 
    10902 > hide #!13 models
    10903 
    10904 > show #!18 models
    10905 
    10906 > hide #!18 models
    10907 
    10908 > show #!17 models
    10909 
    10910 > hide #!17 models
    10911 
    10912 > show #!56 models
    10913 
    10914 > select add #16
    10915 
    10916 241 atoms, 240 bonds, 15 residues, 1 model selected 
    10917 
    10918 > select #16/6:116
    10919 
    10920 16 atoms, 15 bonds, 1 residue, 1 model selected 
    10921 
    10922 > cofr sel
    10923 
    10924 > ui mousemode right "rotate selected models"
    10925 
    10926 > view matrix models
    10927 > #16,0.85622,0.36853,-0.36203,22.659,-0.45882,0.86455,-0.20505,154.04,0.23743,0.34168,0.90933,-101.51
    10928 
    10929 > ui mousemode right "translate selected models"
    10930 
    10931 > view matrix models
    10932 > #16,0.85622,0.36853,-0.36203,20.435,-0.45882,0.86455,-0.20505,154.04,0.23743,0.34168,0.90933,-102.86
    10933 
    10934 > ui mousemode right "rotate selected models"
    10935 
    10936 > select add #15
    10937 
    10938 225 atoms, 223 bonds, 16 residues, 2 models selected 
    10939 
    10940 > select add #16
    10941 
    10942 450 atoms, 448 bonds, 30 residues, 2 models selected 
    10943 
    10944 > select subtract #16
    10945 
    10946 209 atoms, 208 bonds, 15 residues, 1 model selected 
    10947 
    10948 > view matrix models
    10949 > #15,0.97088,-0.068756,-0.22948,68.183,0.053269,0.99591,-0.073019,3.0315,0.23357,0.058669,0.97057,-52.435
    10950 
    10951 > ui mousemode right "translate selected models"
    10952 
    10953 > view matrix models
    10954 > #15,0.97088,-0.068756,-0.22948,64.168,0.053269,0.99591,-0.073019,3.2088,0.23357,0.058669,0.97057,-54.887
    10955 
    10956 > view matrix models
    10957 > #15,0.97088,-0.068756,-0.22948,64.781,0.053269,0.99591,-0.073019,2.1974,0.23357,0.058669,0.97057,-54.372
    10958 
    10959 > view matrix models
    10960 > #15,0.97088,-0.068756,-0.22948,63.512,0.053269,0.99591,-0.073019,3.1284,0.23357,0.058669,0.97057,-55.219
    10961 
    10962 > view matrix models
    10963 > #15,0.97088,-0.068756,-0.22948,62.866,0.053269,0.99591,-0.073019,4.3688,0.23357,0.058669,0.97057,-54.45
    10964 
    10965 > view matrix models
    10966 > #15,0.97088,-0.068756,-0.22948,63.068,0.053269,0.99591,-0.073019,4.1194,0.23357,0.058669,0.97057,-54.477
    10967 
    10968 > view matrix models
    10969 > #15,0.97088,-0.068756,-0.22948,61.683,0.053269,0.99591,-0.073019,4.9255,0.23357,0.058669,0.97057,-54.801
    10970 
    10971 > show #!17 models
    10972 
    10973 > show #!8 models
    10974 
    10975 > show #!18 models
    10976 
    10977 > select subtract #15
    10978 
    10979 Nothing selected 
    10980 
    10981 > select add #14
    10982 
    10983 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    10984 
    10985 > select subtract #14
    10986 
    10987 Nothing selected 
    10988 
    10989 > select add #13
    10990 
    10991 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    10992 
    10993 > select subtract #13
    10994 
    10995 Nothing selected 
    10996 
    10997 > select add #18
    10998 
    10999 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    11000 
    11001 > select subtract #18
    11002 
    11003 Nothing selected 
    11004 
    11005 > select add #17
    11006 
    11007 257 atoms, 259 bonds, 15 residues, 1 model selected 
    11008 
    11009 > ui mousemode right "translate selected models"
    11010 
    11011 > view matrix models
    11012 > #17,0.66001,-0.74079,0.125,175.5,0.73369,0.67136,0.10476,-77.72,-0.16153,0.022564,0.98661,29.825
    11013 
    11014 > ui mousemode right "rotate selected models"
    11015 
    11016 > view matrix models
    11017 > #17,0.70804,-0.70132,0.082622,167.92,0.69467,0.71276,0.096989,-76.893,-0.12691,-0.011277,0.99185,28.882
    11018 
    11019 > ui mousemode right "translate selected models"
    11020 
    11021 > view matrix models
    11022 > #17,0.70804,-0.70132,0.082622,168.04,0.69467,0.71276,0.096989,-76.611,-0.12691,-0.011277,0.99185,28.022
    11023 
    11024 > view matrix models
    11025 > #17,0.70804,-0.70132,0.082622,168.49,0.69467,0.71276,0.096989,-76.269,-0.12691,-0.011277,0.99185,27.69
    11026 
    11027 > view matrix models
    11028 > #17,0.70804,-0.70132,0.082622,168.62,0.69467,0.71276,0.096989,-76.394,-0.12691,-0.011277,0.99185,27.345
    11029 
    11030 > view matrix models
    11031 > #17,0.70804,-0.70132,0.082622,168.34,0.69467,0.71276,0.096989,-76.529,-0.12691,-0.011277,0.99185,28.022
    11032 
    11033 > view matrix models
    11034 > #17,0.70804,-0.70132,0.082622,168.27,0.69467,0.71276,0.096989,-77.308,-0.12691,-0.011277,0.99185,27.919
    11035 
    11036 > view matrix models
    11037 > #17,0.70804,-0.70132,0.082622,168.25,0.69467,0.71276,0.096989,-76.994,-0.12691,-0.011277,0.99185,27.805
    11038 
    11039 > view matrix models
    11040 > #17,0.70804,-0.70132,0.082622,168.27,0.69467,0.71276,0.096989,-76.951,-0.12691,-0.011277,0.99185,27.608
    11041 
    11042 > show #!14 models
    11043 
    11044 > select add #14
    11045 
    11046 708 atoms, 709 bonds, 1 pseudobond, 44 residues, 3 models selected 
    11047 
    11048 > select subtract #17
    11049 
    11050 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    11051 
    11052 > ui mousemode right "translate selected models"
    11053 
    11054 > view matrix models
    11055 > #14,0.87549,0.41224,-0.25213,-14.712,-0.30018,0.87284,0.38477,-15.451,0.37869,-0.26118,0.88791,4.3848
    11056 
    11057 > view matrix models
    11058 > #14,0.87549,0.41224,-0.25213,-14.248,-0.30018,0.87284,0.38477,-13.565,0.37869,-0.26118,0.88791,4.8421
    11059 
    11060 > ui mousemode right "rotate selected models"
    11061 
    11062 > view matrix models
    11063 > #14,0.93163,0.30624,0.19565,-88.022,-0.33765,0.92852,0.15445,25.807,-0.13437,-0.20995,0.96844,78.324
    11064 
    11065 > view matrix models
    11066 > #14,0.95401,0.25473,0.15805,-74.104,-0.27291,0.95616,0.10625,16.47,-0.12406,-0.1445,0.9817,59.697
    11067 
    11068 > view matrix models
    11069 > #14,0.96467,0.25756,0.055467,-57.167,-0.26278,0.95581,0.1318,9.6842,-0.019068,-0.14172,0.98972,37.118
    11070 
    11071 > view matrix models
    11072 > #14,0.97104,0.23351,0.050627,-52.305,-0.23813,0.96319,0.12475,4.6456,-0.019633,-0.13319,0.9909,35.168
    11073 
    11074 > view matrix models
    11075 > #14,0.87617,0.35776,-0.32302,10.903,-0.31479,0.9322,0.17864,15.935,0.36503,-0.054835,0.92938,-44.833
    11076 
    11077 > ui mousemode right "translate selected models"
    11078 
    11079 > view matrix models
    11080 > #14,0.87617,0.35776,-0.32302,9.3196,-0.31479,0.9322,0.17864,15.021,0.36503,-0.054835,0.92938,-46.182
    11081 
    11082 > view matrix models
    11083 > #14,0.87617,0.35776,-0.32302,9.967,-0.31479,0.9322,0.17864,15.245,0.36503,-0.054835,0.92938,-46.521
    11084 
    11085 > ui mousemode right "rotate selected models"
    11086 
    11087 > view matrix models
    11088 > #14,0.85864,0.42986,-0.2792,-10.516,-0.36649,0.89567,0.2519,19.159,0.35835,-0.11397,0.9266,-31.965
    11089 
    11090 > view matrix models
    11091 > #14,0.88594,0.4137,-0.20968,-25.652,-0.36043,0.89863,0.2501,17.688,0.29189,-0.146,0.94524,-15.696
    11092 
    11093 > view matrix models
    11094 > #14,0.86936,0.42437,-0.25322,-16.391,-0.36489,0.89681,0.25019,18.932,0.33326,-0.12511,0.9345,-26.192
    11095 
    11096 > view matrix models
    11097 > #14,0.89913,0.33098,-0.2864,4.254,-0.27704,0.93694,0.21305,0.2925,0.33885,-0.11221,0.93412,-29.984
    11098 
    11099 > ui mousemode right "translate selected models"
    11100 
    11101 > view matrix models
    11102 > #14,0.89913,0.33098,-0.2864,6.1951,-0.27704,0.93694,0.21305,1.0147,0.33885,-0.11221,0.93412,-30.539
    11103 
    11104 > view matrix models
    11105 > #14,0.89913,0.33098,-0.2864,6.0839,-0.27704,0.93694,0.21305,1.2734,0.33885,-0.11221,0.93412,-30.396
    11106 
    11107 > view matrix models
    11108 > #14,0.89913,0.33098,-0.2864,4.5975,-0.27704,0.93694,0.21305,-1.1072,0.33885,-0.11221,0.93412,-31.003
    11109 
    11110 > show #!13 models
    11111 
    11112 > ui mousemode right "translate selected models"
    11113 
    11114 > select add #13
    11115 
    11116 547 atoms, 545 bonds, 2 pseudobonds, 37 residues, 4 models selected 
    11117 
    11118 > select subtract #14
    11119 
    11120 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    11121 
    11122 > view matrix models
    11123 > #13,0.79314,0.60856,-0.024242,-90.928,-0.59978,0.77354,-0.20468,184.11,-0.10581,0.17688,0.97853,-15.33
    11124 
    11125 > view matrix models
    11126 > #13,0.79314,0.60856,-0.024242,-90.625,-0.59978,0.77354,-0.20468,184.78,-0.10581,0.17688,0.97853,-15.21
    11127 
    11128 > select add #14
    11129 
    11130 547 atoms, 545 bonds, 2 pseudobonds, 37 residues, 4 models selected 
    11131 
    11132 > view matrix models
    11133 > #13,0.79314,0.60856,-0.024242,-90.688,-0.59978,0.77354,-0.20468,184.52,-0.10581,0.17688,0.97853,-15.236,#14,0.89913,0.33098,-0.2864,4.5343,-0.27704,0.93694,0.21305,-1.3609,0.33885,-0.11221,0.93412,-31.029
    11134 
    11135 > select subtract #14
    11136 
    11137 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    11138 
    11139 > select subtract #13
    11140 
    11141 Nothing selected 
    11142 
    11143 > select add #14
    11144 
    11145 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    11146 
    11147 > select subtract #14
    11148 
    11149 Nothing selected 
    11150 
    11151 > select add #13
    11152 
    11153 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    11154 
    11155 > view matrix models
    11156 > #13,0.79314,0.60856,-0.024242,-90.618,-0.59978,0.77354,-0.20468,182.65,-0.10581,0.17688,0.97853,-15.276
    11157 
    11158 > view matrix models
    11159 > #13,0.79314,0.60856,-0.024242,-90.805,-0.59978,0.77354,-0.20468,182.23,-0.10581,0.17688,0.97853,-15.387
    11160 
    11161 > select subtract #13
    11162 
    11163 Nothing selected 
    11164 
    11165 > select add #16
    11166 
    11167 241 atoms, 240 bonds, 15 residues, 1 model selected 
    11168 
    11169 > select subtract #16
    11170 
    11171 Nothing selected 
    11172 
    11173 > select add #17
    11174 
    11175 257 atoms, 259 bonds, 15 residues, 1 model selected 
    11176 
    11177 > select subtract #17
    11178 
    11179 Nothing selected 
    11180 
    11181 > select add #18
    11182 
    11183 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    11184 
    11185 > select subtract #18
    11186 
    11187 Nothing selected 
    11188 
    11189 > select add #19
    11190 
    11191 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    11192 
    11193 > select subtract #19
    11194 
    11195 Nothing selected 
    11196 
    11197 > select add #13
    11198 
    11199 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    11200 
    11201 > select subtract #13
    11202 
    11203 Nothing selected 
    11204 
    11205 > select add #14
    11206 
    11207 451 atoms, 450 bonds, 1 pseudobond, 29 residues, 2 models selected 
    11208 
    11209 > select subtract #14
    11210 
    11211 Nothing selected 
    11212 
    11213 > select add #15
    11214 
    11215 209 atoms, 208 bonds, 15 residues, 1 model selected 
    11216 
    11217 > view sel
    11218 
    11219 > ui mousemode right "translate selected models"
    11220 
    11221 > ui mousemode right "rotate selected models"
    11222 
    11223 > view matrix models
    11224 > #15,0.96514,-0.13655,-0.2233,74.886,0.12943,0.99051,-0.046291,-14.168,0.22751,0.015775,0.97365,-45.81
    11225 
    11226 > ui mousemode right "translate selected models"
    11227 
    11228 > view matrix models
    11229 > #15,0.96514,-0.13655,-0.2233,79.154,0.12943,0.99051,-0.046291,-13.019,0.22751,0.015775,0.97365,-43.135
    11230 
    11231 > ui mousemode right "rotate selected models"
    11232 
    11233 > view matrix models
    11234 > #15,0.9589,-0.17873,-0.22037,88.069,0.17664,0.98384,-0.029323,-24.282,0.22205,-0.010809,0.97498,-37.116
    11235 
    11236 > select add #14
    11237 
    11238 660 atoms, 658 bonds, 1 pseudobond, 44 residues, 3 models selected 
    11239 
    11240 > select subtract #14
    11241 
    11242 209 atoms, 208 bonds, 15 residues, 1 model selected 
    11243 
    11244 > select subtract #15
    11245 
    11246 Nothing selected 
    11247 
    11248 > select add #16
    11249 
    11250 241 atoms, 240 bonds, 15 residues, 1 model selected 
    11251 
    11252 > ui mousemode right "rotate selected models"
    11253 
    11254 > view matrix models
    11255 > #16,0.85061,0.38736,-0.35555,16.147,-0.41446,0.91007,-4.9863e-05,96.109,0.32355,0.1474,0.93466,-81.8
    11256 
    11257 > ui mousemode right "translate selected models"
    11258 
    11259 > view matrix models
    11260 > #16,0.85061,0.38736,-0.35555,16.272,-0.41446,0.91007,-4.9863e-05,96.062,0.32355,0.1474,0.93466,-80.652
    11261 
    11262 > ui mousemode right "rotate selected models"
    11263 
    11264 > view matrix models
    11265 > #16,0.86131,0.36145,-0.35707,20.178,-0.39728,0.91721,-0.029831,97.064,0.31672,0.16755,0.9336,-83.535
    11266 
    11267 > view matrix models
    11268 > #16,0.89397,0.27219,-0.356,33.2,-0.33598,0.93278,-0.13051,101.71,0.29655,0.23628,0.92533,-93.048
    11269 
    11270 > view matrix models
    11271 > #16,0.92278,0.21933,-0.31681,31.658,-0.28636,0.94048,-0.18299,100.91,0.25782,0.25959,0.93067,-91.872
    11272 
    11273 > ui mousemode right "translate selected models"
    11274 
    11275 > view matrix models
    11276 > #16,0.92278,0.21933,-0.31681,30.966,-0.28636,0.94048,-0.18299,101.27,0.25782,0.25959,0.93067,-91.696
    11277 
    11278 > view matrix models
    11279 > #16,0.92278,0.21933,-0.31681,31.2,-0.28636,0.94048,-0.18299,101.33,0.25782,0.25959,0.93067,-92.342
    11280 
    11281 > view matrix models
    11282 > #16,0.92278,0.21933,-0.31681,31.05,-0.28636,0.94048,-0.18299,101.38,0.25782,0.25959,0.93067,-92.311
    11283 
    11284 > select add #15
    11285 
    11286 450 atoms, 448 bonds, 30 residues, 2 models selected 
    11287 
    11288 > ui mousemode right "rotate selected models"
    11289 
    11290 > view matrix models
    11291 > #15,0.95904,-0.17784,-0.22048,87.877,0.17569,0.984,-0.029495,-24.096,0.22219,-0.010448,0.97495,-37.213,#16,0.9225,0.22016,-0.31705,30.977,-0.2873,0.94019,-0.18306,101.64,0.25778,0.25996,0.93057,-92.364
    11292 
    11293 > select subtract #15
    11294 
    11295 241 atoms, 240 bonds, 15 residues, 1 model selected 
    11296 
    11297 > select add #15
    11298 
    11299 450 atoms, 448 bonds, 30 residues, 2 models selected 
    11300 
    11301 > select subtract #15
    11302 
    11303 241 atoms, 240 bonds, 15 residues, 1 model selected 
    11304 
    11305 > select subtract #16
    11306 
    11307 Nothing selected 
    11308 
    11309 > select add #16
    11310 
    11311 241 atoms, 240 bonds, 15 residues, 1 model selected 
    11312 
    11313 > select subtract #16
    11314 
    11315 Nothing selected 
    11316 
    11317 > select add #15
    11318 
    11319 209 atoms, 208 bonds, 15 residues, 1 model selected 
    11320 
    11321 > view matrix models
    11322 > #15,0.94254,-0.2585,-0.21166,105.17,0.26165,0.96507,-0.013484,-40.278,0.20775,-0.04267,0.97725,-28.536
    11323 
    11324 > select clear
    11325 
    11326 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    11327 > MRCLaboratoryofMolecularBiology/Documents/Carter
    11328 > Lab/Diorge/Membranes/Fit14-10.cxs"
    11329 
    11330 ——— End of log from Tue Jan 9 11:58:46 2024 ———
    11331 
    11332 opened ChimeraX session 
    11333 
    11334 > hide #!56 models
    11335 
    11336 > hide #!18 models
    11337 
    11338 > show #!18 models
    11339 
    11340 > hide #!13 models
    11341 
    11342 > show #!13 models
    11343 
    11344 > hide #!14 models
    11345 
    11346 > show #!14 models
    11347 
    11348 > combine #14
    11349 
    11350 > hide #!13 models
    11351 
    11352 > show #!13 models
    11353 
    11354 > hide #!8 models
    11355 
    11356 > hide #!14-18 target m
    11357 
    11358 > hide #!13 models
    11359 
    11360 > show #!13 models
    11361 
    11362 > hide #!13 models
    11363 
    11364 > show #!14 models
    11365 
    11366 > hide #!14 models
    11367 
    11368 Drag select of 16 residues 
    11369 
    11370 > delete atoms sel
    11371 
    11372 > delete bonds sel
    11373 
    11374 > show #!14 models
    11375 
    11376 > hide #!57 models
    11377 
    11378 Drag select of 12 residues 
    11379 
    11380 > delete atoms sel
    11381 
    11382 > delete bonds sel
    11383 
    11384 > show #!57 models
    11385 
    11386 > show #!8 models
    11387 
    11388 > select add #14
    11389 
    11390 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    11391 
    11392 > select add #57
    11393 
    11394 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    11395 
    11396 > ui mousemode right "translate selected models"
    11397 
    11398 > ui mousemode right "rotate selected models"
    11399 
    11400 > view matrix models
    11401 > #14,0.88983,0.40916,-0.20197,-26.585,-0.31757,0.87317,0.36977,-9.727,0.32764,-0.26489,0.90691,9.1474,#57,0.88983,0.40916,-0.20197,-26.585,-0.31757,0.87317,0.36977,-9.727,0.32764,-0.26489,0.90691,9.1474
    11402 
    11403 > ui mousemode right "translate selected models"
    11404 
    11405 > view matrix models
    11406 > #14,0.88983,0.40916,-0.20197,-27.435,-0.31757,0.87317,0.36977,-9.7574,0.32764,-0.26489,0.90691,10.366,#57,0.88983,0.40916,-0.20197,-27.435,-0.31757,0.87317,0.36977,-9.7574,0.32764,-0.26489,0.90691,10.366
    11407 
    11408 > select subtract #14
    11409 
    11410 197 atoms, 195 bonds, 1 pseudobond, 13 residues, 2 models selected 
    11411 
    11412 > select add #14
    11413 
    11414 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    11415 
    11416 > select subtract #57
    11417 
    11418 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    11419 
    11420 > ui mousemode right "rotate selected models"
    11421 
    11422 > select #8
    11423 
    11424 4 models selected 
    11425 
    11426 > select #14/o:123
    11427 
    11428 24 atoms, 23 bonds, 1 residue, 1 model selected 
    11429 
    11430 > view matrix models
    11431 > #14,0.86171,0.50704,-0.018976,-76.961,-0.39038,0.68641,0.61356,-3.2765,0.32412,-0.5213,0.78942,86.388
    11432 
    11433 > ui mousemode right "translate selected models"
    11434 
    11435 > view matrix models
    11436 > #14,0.86171,0.50704,-0.018976,-78.64,-0.39038,0.68641,0.61356,-1.4301,0.32412,-0.5213,0.78942,89.958
    11437 
    11438 > view matrix models
    11439 > #14,0.86171,0.50704,-0.018976,-78.504,-0.39038,0.68641,0.61356,-1.167,0.32412,-0.5213,0.78942,90.391
    11440 
    11441 > ui mousemode right "rotate selected models"
    11442 
    11443 > view matrix models
    11444 > #14,0.89914,0.40318,0.17029,-100.2,-0.37525,0.50992,0.77406,1.9431,0.22526,-0.75989,0.60978,193.01
    11445 
    11446 > ui mousemode right "translate selected models"
    11447 
    11448 > view matrix models
    11449 > #14,0.89914,0.40318,0.17029,-99.227,-0.37525,0.50992,0.77406,3.5664,0.22526,-0.75989,0.60978,195.14
    11450 
    11451 > ui mousemode right "rotate selected models"
    11452 
    11453 > view matrix models
    11454 > #14,0.95336,0.29553,0.061333,-66.796,-0.23784,0.61048,0.75547,-40.356,0.18582,-0.73483,0.6523,189.53
    11455 
    11456 > ui mousemode right "translate selected models"
    11457 
    11458 > view matrix models
    11459 > #14,0.95336,0.29553,0.061333,-65.126,-0.23784,0.61048,0.75547,-42.198,0.18582,-0.73483,0.6523,189.18
    11460 
    11461 > select add #14
    11462 
    11463 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    11464 
    11465 > select add #57
    11466 
    11467 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    11468 
    11469 > ui mousemode right "translate selected models"
    11470 
    11471 > view matrix models
    11472 > #14,0.95336,0.29553,0.061333,-64.858,-0.23784,0.61048,0.75547,-41.394,0.18582,-0.73483,0.6523,189.23,#57,0.88983,0.40916,-0.20197,-27.167,-0.31757,0.87317,0.36977,-8.9541,0.32764,-0.26489,0.90691,10.413
    11473 
    11474 > view matrix models
    11475 > #14,0.95336,0.29553,0.061333,-65.125,-0.23784,0.61048,0.75547,-41.433,0.18582,-0.73483,0.6523,189.16,#57,0.88983,0.40916,-0.20197,-27.434,-0.31757,0.87317,0.36977,-8.9928,0.32764,-0.26489,0.90691,10.342
    11476 
    11477 > select subtract #57
    11478 
    11479 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    11480 
    11481 > select add #57
    11482 
    11483 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    11484 
    11485 > select subtract #14
    11486 
    11487 197 atoms, 195 bonds, 1 pseudobond, 13 residues, 2 models selected 
    11488 
    11489 > ui mousemode right "rotate selected models"
    11490 
    11491 > view matrix models
    11492 > #57,0.79339,0.58536,-0.16699,-54.989,-0.51524,0.79187,0.32782,56.401,0.32413,-0.17405,0.92986,-13.917
    11493 
    11494 > view matrix models
    11495 > #57,0.79205,0.58727,-0.16665,-55.223,-0.5174,0.79068,0.32729,57.196,0.32397,-0.17301,0.93011,-14.169
    11496 
    11497 > view matrix models
    11498 > #57,0.81687,0.5501,-0.17355,-50.384,-0.47547,0.81248,0.33735,42.073,0.32658,-0.19306,0.92524,-9.2143
    11499 
    11500 > ui mousemode right "translate selected models"
    11501 
    11502 > view matrix models
    11503 > #57,0.81687,0.5501,-0.17355,-50.067,-0.47547,0.81248,0.33735,41.397,0.32658,-0.19306,0.92524,-8.041
    11504 
    11505 > view matrix models
    11506 > #57,0.81687,0.5501,-0.17355,-49.458,-0.47547,0.81248,0.33735,41.124,0.32658,-0.19306,0.92524,-8.3866
    11507 
    11508 > view matrix models
    11509 > #57,0.81687,0.5501,-0.17355,-49.632,-0.47547,0.81248,0.33735,40.656,0.32658,-0.19306,0.92524,-7.829
    11510 
    11511 > show #!13 models
    11512 
    11513 > show #!15 models
    11514 
    11515 > show #!16 models
    11516 
    11517 > show #!17 models
    11518 
    11519 > show #!18 models
    11520 
    11521 > hide #!14 models
    11522 
    11523 > show #!14 models
    11524 
    11525 > hide #!16 models
    11526 
    11527 > show #!16 models
    11528 
    11529 > hide #!17 models
    11530 
    11531 > show #!17 models
    11532 
    11533 > hide #!18 models
    11534 
    11535 > show #!18 models
    11536 
    11537 > hide #!15 models
    11538 
    11539 > show #!15 models
    11540 
    11541 > hide #!16 models
    11542 
    11543 > show #!16 models
    11544 
    11545 > hide #!15 models
    11546 
    11547 > show #!15 models
    11548 
    11549 > select clear
    11550 
    11551 > select add #13
    11552 
    11553 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    11554 
    11555 > select subtract #13
    11556 
    11557 Nothing selected 
    11558 
    11559 > select add #14
    11560 
    11561 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    11562 
    11563 > select subtract #14
    11564 
    11565 Nothing selected 
    11566 
    11567 > select add #15
    11568 
    11569 209 atoms, 208 bonds, 15 residues, 1 model selected 
    11570 
    11571 > select add #16
    11572 
    11573 450 atoms, 448 bonds, 30 residues, 2 models selected 
    11574 
    11575 > view matrix models
    11576 > #15,0.94254,-0.2585,-0.21166,106.09,0.26165,0.96507,-0.013484,-16.952,0.20775,-0.04267,0.97725,-27.973,#16,0.9225,0.22016,-0.31705,31.896,-0.2873,0.94019,-0.18306,124.96,0.25778,0.25996,0.93057,-91.801
    11577 
    11578 > view matrix models
    11579 > #15,0.94254,-0.2585,-0.21166,105.98,0.26165,0.96507,-0.013484,-18.181,0.20775,-0.04267,0.97725,-26.886,#16,0.9225,0.22016,-0.31705,31.79,-0.2873,0.94019,-0.18306,123.73,0.25778,0.25996,0.93057,-90.714
    11580 
    11581 > view matrix models
    11582 > #15,0.94254,-0.2585,-0.21166,104.58,0.26165,0.96507,-0.013484,-19.257,0.20775,-0.04267,0.97725,-27.845,#16,0.9225,0.22016,-0.31705,30.385,-0.2873,0.94019,-0.18306,122.66,0.25778,0.25996,0.93057,-91.673
    11583 
    11584 > view matrix models
    11585 > #15,0.94254,-0.2585,-0.21166,104.16,0.26165,0.96507,-0.013484,-18.417,0.20775,-0.04267,0.97725,-27.982,#16,0.9225,0.22016,-0.31705,29.972,-0.2873,0.94019,-0.18306,123.5,0.25778,0.25996,0.93057,-91.81
    11586 
    11587 > ui mousemode right "rotate selected models"
    11588 
    11589 > view matrix models
    11590 > #15,0.95533,-0.19734,-0.22,90.68,0.217,0.97374,0.068836,-27.758,0.20064,-0.1135,0.97307,-11.133,#16,0.90063,0.27636,-0.3354,26.02,-0.32474,0.94084,-0.096789,113.59,0.28881,0.19609,0.93709,-85.683
    11591 
    11592 > ui mousemode right "translate selected models"
    11593 
    11594 > view matrix models
    11595 > #15,0.95533,-0.19734,-0.22,92.286,0.217,0.97374,0.068836,-27.584,0.20064,-0.1135,0.97307,-11.084,#16,0.90063,0.27636,-0.3354,27.626,-0.32474,0.94084,-0.096789,113.77,0.28881,0.19609,0.93709,-85.633
    11596 
    11597 > view matrix models
    11598 > #15,0.95533,-0.19734,-0.22,92.442,0.217,0.97374,0.068836,-27.728,0.20064,-0.1135,0.97307,-11.789,#16,0.90063,0.27636,-0.3354,27.782,-0.32474,0.94084,-0.096789,113.62,0.28881,0.19609,0.93709,-86.338
    11599 
    11600 > ui mousemode right "translate selected models"
    11601 
    11602 > view matrix models
    11603 > #15,0.95533,-0.19734,-0.22,92.237,0.217,0.97374,0.068836,-27.96,0.20064,-0.1135,0.97307,-12.738,#16,0.90063,0.27636,-0.3354,27.577,-0.32474,0.94084,-0.096789,113.39,0.28881,0.19609,0.93709,-87.288
    11604 
    11605 > view matrix models
    11606 > #15,0.95533,-0.19734,-0.22,92.072,0.217,0.97374,0.068836,-27.528,0.20064,-0.1135,0.97307,-12.74,#16,0.90063,0.27636,-0.3354,27.412,-0.32474,0.94084,-0.096789,113.82,0.28881,0.19609,0.93709,-87.289
    11607 
    11608 > view matrix models
    11609 > #15,0.95533,-0.19734,-0.22,92.761,0.217,0.97374,0.068836,-27.231,0.20064,-0.1135,0.97307,-12.439,#16,0.90063,0.27636,-0.3354,28.101,-0.32474,0.94084,-0.096789,114.12,0.28881,0.19609,0.93709,-86.989
    11610 
    11611 > ui mousemode right "rotate selected models"
    11612 
    11613 > view matrix models
    11614 > #15,0.96281,-0.13437,-0.23441,81.125,0.15032,0.9873,0.051493,-13.735,0.22451,-0.084815,0.97077,-22.535,#16,0.87293,0.3302,-0.35912,26.825,-0.38946,0.915,-0.10536,133.68,0.2938,0.23183,0.92733,-93.516
    11615 
    11616 > ui mousemode right "translate selected models"
    11617 
    11618 > view matrix models
    11619 > #15,0.96281,-0.13437,-0.23441,81.889,0.15032,0.9873,0.051493,-13.559,0.22451,-0.084815,0.97077,-22.191,#16,0.87293,0.3302,-0.35912,27.589,-0.38946,0.915,-0.10536,133.86,0.2938,0.23183,0.92733,-93.171
    11620 
    11621 > view matrix models
    11622 > #15,0.96281,-0.13437,-0.23441,82.152,0.15032,0.9873,0.051493,-13.443,0.22451,-0.084815,0.97077,-22.295,#16,0.87293,0.3302,-0.35912,27.852,-0.38946,0.915,-0.10536,133.97,0.2938,0.23183,0.92733,-93.276
    11623 
    11624 > view matrix models
    11625 > #15,0.96281,-0.13437,-0.23441,81.877,0.15032,0.9873,0.051493,-13.52,0.22451,-0.084815,0.97077,-22.451,#16,0.87293,0.3302,-0.35912,27.577,-0.38946,0.915,-0.10536,133.9,0.2938,0.23183,0.92733,-93.432
    11626 
    11627 > view matrix models
    11628 > #15,0.96281,-0.13437,-0.23441,81.439,0.15032,0.9873,0.051493,-13.386,0.22451,-0.084815,0.97077,-22.156,#16,0.87293,0.3302,-0.35912,27.139,-0.38946,0.915,-0.10536,134.03,0.2938,0.23183,0.92733,-93.136
    11629 
    11630 > view matrix models
    11631 > #15,0.96281,-0.13437,-0.23441,81.328,0.15032,0.9873,0.051493,-13.242,0.22451,-0.084815,0.97077,-22.268,#16,0.87293,0.3302,-0.35912,27.028,-0.38946,0.915,-0.10536,134.17,0.2938,0.23183,0.92733,-93.248
    11632 
    11633 > select subtract #15
    11634 
    11635 241 atoms, 240 bonds, 15 residues, 1 model selected 
    11636 
    11637 > ui mousemode right zoom
    11638 
    11639 > ui mousemode right "translate selected models"
    11640 
    11641 > view matrix models
    11642 > #16,0.87293,0.3302,-0.35912,27.172,-0.38946,0.915,-0.10536,134.37,0.2938,0.23183,0.92733,-91.571
    11643 
    11644 > view matrix models
    11645 > #16,0.87293,0.3302,-0.35912,27.644,-0.38946,0.915,-0.10536,134.51,0.2938,0.23183,0.92733,-91.568
    11646 
    11647 > ui mousemode right "rotate selected models"
    11648 
    11649 > view matrix models
    11650 > #16,0.88888,0.29929,-0.34688,28.982,-0.38645,0.89646,-0.21683,159.58,0.24607,0.32679,0.9125,-100.33
    11651 
    11652 > ui mousemode right "translate selected models"
    11653 
    11654 > view matrix models
    11655 > #16,0.88888,0.29929,-0.34688,28.571,-0.38645,0.89646,-0.21683,159.91,0.24607,0.32679,0.9125,-99.177
    11656 
    11657 > select add #15
    11658 
    11659 450 atoms, 448 bonds, 30 residues, 2 models selected 
    11660 
    11661 > select add #17
    11662 
    11663 707 atoms, 707 bonds, 45 residues, 3 models selected 
    11664 
    11665 > select subtract #17
    11666 
    11667 450 atoms, 448 bonds, 30 residues, 2 models selected 
    11668 
    11669 > select subtract #16
    11670 
    11671 209 atoms, 208 bonds, 15 residues, 1 model selected 
    11672 
    11673 > ui mousemode right "rotate selected models"
    11674 
    11675 > view matrix models
    11676 > #15,0.99459,-0.09133,-0.049407,29.533,0.094008,0.99406,0.054905,-4.324,0.044099,-0.059252,0.99727,2.4103
    11677 
    11678 > undo
    11679 
    11680 > view matrix models
    11681 > #15,0.9599,-0.16055,-0.2298,86.113,0.15787,0.987,-0.030145,1.7496,0.23165,-0.0073413,0.97277,-39.287
    11682 
    11683 > view matrix models
    11684 > #15,0.96407,-0.15914,-0.21271,81.595,0.14804,0.98669,-0.067237,11.169,0.22058,0.033331,0.9748,-45.542
    11685 
    11686 > ui mousemode right "translate selected models"
    11687 
    11688 > view matrix models
    11689 > #15,0.96407,-0.15914,-0.21271,81.296,0.14804,0.98669,-0.067237,11.313,0.22058,0.033331,0.9748,-44.501
    11690 
    11691 > select add #16
    11692 
    11693 450 atoms, 448 bonds, 30 residues, 2 models selected 
    11694 
    11695 > select subtract #15
    11696 
    11697 241 atoms, 240 bonds, 15 residues, 1 model selected 
    11698 
    11699 > ui mousemode right "translate selected models"
    11700 
    11701 > view matrix models
    11702 > #16,0.88888,0.29929,-0.34688,28.265,-0.38645,0.89646,-0.21683,160.12,0.24607,0.32679,0.9125,-97.522
    11703 
    11704 > view matrix models
    11705 > #16,0.88888,0.29929,-0.34688,28.463,-0.38645,0.89646,-0.21683,160.29,0.24607,0.32679,0.9125,-97.563
    11706 
    11707 > view matrix models
    11708 > #16,0.88888,0.29929,-0.34688,28.462,-0.38645,0.89646,-0.21683,160.29,0.24607,0.32679,0.9125,-97.552
    11709 
    11710 > ui mousemode right "rotate selected models"
    11711 
    11712 > view matrix models
    11713 > #16,0.88487,0.24463,-0.39643,50.671,-0.25973,0.96555,0.016098,76.381,0.38671,0.08872,0.91792,-73.365
    11714 
    11715 > ui mousemode right "translate selected models"
    11716 
    11717 > view matrix models
    11718 > #16,0.88487,0.24463,-0.39643,50.558,-0.25973,0.96555,0.016098,74.97,0.38671,0.08872,0.91792,-75.873
    11719 
    11720 > select add #15
    11721 
    11722 450 atoms, 448 bonds, 30 residues, 2 models selected 
    11723 
    11724 > ui mousemode right "rotate selected models"
    11725 
    11726 > view matrix models
    11727 > #15,0.9587,-0.16887,-0.22885,87.509,0.16509,0.98563,-0.035736,2.0449,0.2316,-0.0035204,0.97281,-38.653,#16,0.88045,0.23406,-0.41233,56.725,-0.23748,0.97041,0.043768,64.276,0.41037,0.059385,0.90998,-72.723
    11728 
    11729 > ui mousemode right "translate selected models"
    11730 
    11731 > view matrix models
    11732 > #15,0.9587,-0.16887,-0.22885,87.465,0.16509,0.98563,-0.035736,1.684,0.2316,-0.0035204,0.97281,-39.452,#16,0.88045,0.23406,-0.41233,56.681,-0.23748,0.97041,0.043768,63.915,0.41037,0.059385,0.90998,-73.522
    11733 
    11734 > view matrix models
    11735 > #15,0.9587,-0.16887,-0.22885,87.526,0.16509,0.98563,-0.035736,1.3469,0.2316,-0.0035204,0.97281,-39.724,#16,0.88045,0.23406,-0.41233,56.742,-0.23748,0.97041,0.043768,63.578,0.41037,0.059385,0.90998,-73.794
    11736 
    11737 > view matrix models
    11738 > #15,0.9587,-0.16887,-0.22885,87.648,0.16509,0.98563,-0.035736,1.5497,0.2316,-0.0035204,0.97281,-39.702,#16,0.88045,0.23406,-0.41233,56.864,-0.23748,0.97041,0.043768,63.781,0.41037,0.059385,0.90998,-73.773
    11739 
    11740 > ui mousemode right "rotate selected models"
    11741 
    11742 > view matrix models
    11743 > #15,0.95697,-0.18167,-0.22631,90.119,0.17235,0.98318,-0.060427,5.4965,0.23348,0.018822,0.97218,-44.544,#16,0.88433,0.22157,-0.41094,58.457,-0.23509,0.97181,0.018061,68.067,0.40335,0.080635,0.91149,-77.158
    11744 
    11745 > ui mousemode right "translate selected models"
    11746 
    11747 > view matrix models
    11748 > #15,0.95697,-0.18167,-0.22631,89.933,0.17235,0.98318,-0.060427,5.4732,0.23348,0.018822,0.97218,-43.767,#16,0.88433,0.22157,-0.41094,58.272,-0.23509,0.97181,0.018061,68.043,0.40335,0.080635,0.91149,-76.382
    11749 
    11750 > view matrix models
    11751 > #15,0.95697,-0.18167,-0.22631,89.688,0.17235,0.98318,-0.060427,5.8145,0.23348,0.018822,0.97218,-43.764,#16,0.88433,0.22157,-0.41094,58.027,-0.23509,0.97181,0.018061,68.385,0.40335,0.080635,0.91149,-76.379
    11752 
    11753 > view matrix models
    11754 > #15,0.95697,-0.18167,-0.22631,89.439,0.17235,0.98318,-0.060427,5.7958,0.23348,0.018822,0.97218,-43.543,#16,0.88433,0.22157,-0.41094,57.777,-0.23509,0.97181,0.018061,68.366,0.40335,0.080635,0.91149,-76.158
    11755 
    11756 > select subtract #15
    11757 
    11758 241 atoms, 240 bonds, 15 residues, 1 model selected 
    11759 
    11760 > ui mousemode right "translate selected models"
    11761 
    11762 > view matrix models
    11763 > #16,0.88433,0.22157,-0.41094,57.638,-0.23509,0.97181,0.018061,68.642,0.40335,0.080635,0.91149,-76.199
    11764 
    11765 > ui mousemode right "rotate selected models"
    11766 
    11767 > view matrix models
    11768 > #16,0.89602,0.18235,-0.40485,62.77,-0.21216,0.97679,-0.029592,72.499,0.39006,0.11241,0.9139,-81.063
    11769 
    11770 > ui mousemode right "translate selected models"
    11771 
    11772 > view matrix models
    11773 > #16,0.89602,0.18235,-0.40485,62.511,-0.21216,0.97679,-0.029592,72.643,0.39006,0.11241,0.9139,-80.871
    11774 
    11775 > view matrix models
    11776 > #16,0.89602,0.18235,-0.40485,62.566,-0.21216,0.97679,-0.029592,72.291,0.39006,0.11241,0.9139,-81.585
    11777 
    11778 > undo
    11779 
    11780 > select up
    11781 
    11782 126806 atoms, 126759 bonds, 8142 residues, 64 models selected 
    11783 
    11784 > select down
    11785 
    11786 241 atoms, 240 bonds, 15 residues, 1 model selected 
    11787 
    11788 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    11789 > MRCLaboratoryofMolecularBiology/Documents/Carter
    11790 > Lab/Diorge/Membranes/Fit14-11.cxs"
    11791 
    11792 > select subtract #16
    11793 
    11794 Nothing selected 
    11795 
    11796 > select clear
    11797 
    11798 > combine #13-18,57
    11799 
    11800 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    11801 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    11802 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    11803 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    11804 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    11805 to 'q' 
    11806 
    11807 > combine #13-18,57
    11808 
    11809 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    11810 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    11811 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    11812 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    11813 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    11814 to 'q' 
    11815 
    11816 > combine #13-18,57
    11817 
    11818 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    11819 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    11820 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    11821 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    11822 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    11823 to 'q' 
    11824 
    11825 > select add #58
    11826 
    11827 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    11828 
    11829 > ui mousemode right "translate selected models"
    11830 
    11831 > view matrix models
    11832 > #58,0.79314,0.60856,-0.024242,-95.323,-0.59978,0.77354,-0.20468,157.94,-0.10581,0.17688,0.97853,-16.06
    11833 
    11834 > ui tool show "Fit in Map"
    11835 
    11836 > fitmap #58 inMap #8
    11837 
    11838 Fit molecule combination (#58) to map postprocess_masked330_onepf.mrc (#8)
    11839 using 2591 atoms 
    11840 average map value = 0.01219, steps = 84 
    11841 shifted from previous position = 3.83 
    11842 rotated from previous position = 6.16 degrees 
    11843 atoms outside contour = 1581, contour level = 0.013465 
    11844  
    11845 Position of combination (#58) relative to postprocess_masked330_onepf.mrc (#8)
    11846 coordinates: 
    11847 Matrix rotation and translation 
    11848 0.74409403 0.65978717 -0.10490455 -77.06679466 
    11849 -0.66504473 0.71659150 -0.21026679 186.37388579 
    11850 -0.06355762 0.22622448 0.97199944 -34.09603723 
    11851 Axis 0.31278538 -0.02962881 -0.94936160 
    11852 Axis point 197.40563079 194.67149122 0.00000000 
    11853 Rotation angle (degrees) 44.24667073 
    11854 Shift along axis 2.74206582 
    11855  
    11856 
    11857 > color #58 #009051ff
    11858 
    11859 > color #58 #00fa92ff
    11860 
    11861 > select add #59
    11862 
    11863 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    11864 
    11865 > select subtract #58
    11866 
    11867 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    11868 
    11869 > view matrix models
    11870 > #59,0.79314,0.60856,-0.024242,-89.671,-0.59978,0.77354,-0.20468,207.18,-0.10581,0.17688,0.97853,-14.419
    11871 
    11872 > fitmap #58 inMap #8
    11873 
    11874 Fit molecule combination (#58) to map postprocess_masked330_onepf.mrc (#8)
    11875 using 2591 atoms 
    11876 average map value = 0.01219, steps = 48 
    11877 shifted from previous position = 0.0352 
    11878 rotated from previous position = 0.0214 degrees 
    11879 atoms outside contour = 1580, contour level = 0.013465 
    11880  
    11881 Position of combination (#58) relative to postprocess_masked330_onepf.mrc (#8)
    11882 coordinates: 
    11883 Matrix rotation and translation 
    11884 0.74431563 0.65953113 -0.10494250 -77.05170774 
    11885 -0.66481427 0.71683946 -0.21015038 186.25749825 
    11886 -0.06337379 0.22618549 0.97202052 -34.09591496 
    11887 Axis 0.31278696 -0.02979849 -0.94935576 
    11888 Axis point 197.38522678 194.63863604 0.00000000 
    11889 Rotation angle (degrees) 44.22652310 
    11890 Shift along axis 2.71819168 
    11891  
    11892 
    11893 > fitmap #58 inMap #8
    11894 
    11895 Fit molecule combination (#58) to map postprocess_masked330_onepf.mrc (#8)
    11896 using 2591 atoms 
    11897 average map value = 0.01219, steps = 44 
    11898 shifted from previous position = 0.00343 
    11899 rotated from previous position = 0.00408 degrees 
    11900 atoms outside contour = 1580, contour level = 0.013465 
    11901  
    11902 Position of combination (#58) relative to postprocess_masked330_onepf.mrc (#8)
    11903 coordinates: 
    11904 Matrix rotation and translation 
    11905 0.74428462 0.65955729 -0.10499806 -77.04179519 
    11906 -0.66485343 0.71680997 -0.21012708 186.26905601 
    11907 -0.06332718 0.22620267 0.97201956 -34.10651762 
    11908 Axis 0.31276842 -0.02987038 -0.94935961 
    11909 Axis point 197.38782958 194.62657242 0.00000000 
    11910 Rotation angle (degrees) 44.22904731 
    11911 Shift along axis 2.71918300 
    11912  
    11913 
    11914 > fitmap #58 inMap #8
    11915 
    11916 Fit molecule combination (#58) to map postprocess_masked330_onepf.mrc (#8)
    11917 using 2591 atoms 
    11918 average map value = 0.01219, steps = 44 
    11919 shifted from previous position = 0.00666 
    11920 rotated from previous position = 0.00457 degrees 
    11921 atoms outside contour = 1582, contour level = 0.013465 
    11922  
    11923 Position of combination (#58) relative to postprocess_masked330_onepf.mrc (#8)
    11924 coordinates: 
    11925 Matrix rotation and translation 
    11926 0.74426514 0.65958972 -0.10493238 -77.05645631 
    11927 -0.66486851 0.71678955 -0.21014900 186.27849395 
    11928 -0.06339769 0.22617281 0.97202191 -34.09139816 
    11929 Axis 0.31275407 -0.02977193 -0.94936743 
    11930 Axis point 197.38388845 194.64370350 0.00000000 
    11931 Rotation angle (degrees) 44.23058954 
    11932 Shift along axis 2.71967187 
    11933  
    11934 
    11935 > fitmap #58 inMap #8
    11936 
    11937 Fit molecule combination (#58) to map postprocess_masked330_onepf.mrc (#8)
    11938 using 2591 atoms 
    11939 average map value = 0.01219, steps = 44 
    11940 shifted from previous position = 0.027 
    11941 rotated from previous position = 0.0124 degrees 
    11942 atoms outside contour = 1583, contour level = 0.013465 
    11943  
    11944 Position of combination (#58) relative to postprocess_masked330_onepf.mrc (#8)
    11945 coordinates: 
    11946 Matrix rotation and translation 
    11947 0.74424362 0.65964149 -0.10475941 -77.09427479 
    11948 -0.66487218 0.71675279 -0.21026275 186.30248217 
    11949 -0.06361143 0.22613833 0.97201597 -34.06416347 
    11950 Axis 0.31279611 -0.02949335 -0.94936228 
    11951 Axis point 197.38454756 194.69740993 0.00000000 
    11952 Rotation angle (degrees) 44.23322655 
    11953 Shift along axis 2.72975893 
    11954  
    11955 
    11956 > fitmap #59 inMap #8
    11957 
    11958 Fit molecule combination (#59) to map postprocess_masked330_onepf.mrc (#8)
    11959 using 2591 atoms 
    11960 average map value = 0.01318, steps = 84 
    11961 shifted from previous position = 2.27 
    11962 rotated from previous position = 6.34 degrees 
    11963 atoms outside contour = 1484, contour level = 0.013465 
    11964  
    11965 Position of combination (#59) relative to postprocess_masked330_onepf.mrc (#8)
    11966 coordinates: 
    11967 Matrix rotation and translation 
    11968 0.80707685 0.59042814 -0.00464339 -93.49300607 
    11969 -0.58784796 0.80276323 -0.10002985 175.12832501 
    11970 -0.05533290 0.08346138 0.99497360 -7.32182999 
    11971 Axis 0.15373507 0.04246936 -0.98719901 
    11972 Axis point 220.55786790 230.49154909 0.00000000 
    11973 Rotation angle (degrees) 36.63944250 
    11974 Shift along axis 0.29253791 
    11975  
    11976 
    11977 > color #58 #0433ffff
    11978 
    11979 > select add #60
    11980 
    11981 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    11982 
    11983 > select subtract #59
    11984 
    11985 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    11986 
    11987 > view matrix models
    11988 > #60,0.79314,0.60856,-0.024242,-99.326,-0.59978,0.77354,-0.20468,132.47,-0.10581,0.17688,0.97853,-9.568
    11989 
    11990 > fitmap #59 inMap #8
    11991 
    11992 Fit molecule combination (#59) to map postprocess_masked330_onepf.mrc (#8)
    11993 using 2591 atoms 
    11994 average map value = 0.01318, steps = 44 
    11995 shifted from previous position = 0.0227 
    11996 rotated from previous position = 0.025 degrees 
    11997 atoms outside contour = 1483, contour level = 0.013465 
    11998  
    11999 Position of combination (#59) relative to postprocess_masked330_onepf.mrc (#8)
    12000 coordinates: 
    12001 Matrix rotation and translation 
    12002 0.80692514 0.59063700 -0.00444416 -93.55278983 
    12003 -0.58805526 0.80264751 -0.09973958 175.12338785 
    12004 -0.05534279 0.08309578 0.99500365 -7.25869046 
    12005 Axis 0.15314462 0.04263317 -0.98728372 
    12006 Axis point 220.41444142 230.52405964 0.00000000 
    12007 Rotation angle (degrees) 36.65083649 
    12008 Shift along axis 0.30534633 
    12009  
    12010 
    12011 > fitmap #60 inMap #8
    12012 
    12013 Fit molecule combination (#60) to map postprocess_masked330_onepf.mrc (#8)
    12014 using 2591 atoms 
    12015 average map value = 0.008678, steps = 216 
    12016 shifted from previous position = 9.11 
    12017 rotated from previous position = 13.1 degrees 
    12018 atoms outside contour = 1871, contour level = 0.013465 
    12019  
    12020 Position of combination (#60) relative to postprocess_masked330_onepf.mrc (#8)
    12021 coordinates: 
    12022 Matrix rotation and translation 
    12023 0.67036005 0.71954272 -0.18131653 -60.63700394 
    12024 -0.74203580 0.64986466 -0.16449559 181.02162202 
    12025 -0.00053040 0.24481463 0.96956976 -49.81749717 
    12026 Axis 0.26777879 -0.11827384 -0.95619340 
    12027 Axis point 167.76162340 164.84419696 0.00000000 
    12028 Rotation angle (degrees) 49.84202942 
    12029 Shift along axis 9.98773667 
    12030  
    12031 
    12032 > color #58 #ff8ad8ff
    12033 
    12034 > color #60 #00fdffff
    12035 
    12036 > select clear
    12037 
    12038 > color #59 #d783ffff
    12039 
    12040 > color #59 #941751ff
    12041 
    12042 > color #59 #00f900ff
    12043 
    12044 > select clear
    12045 
    12046 > ui windowfill toggle
    12047 
    12048 [Repeated 1 time(s)]
    12049 
    12050 > volume #8 level 0.008765
    12051 
    12052 > hide #!8 models
    12053 
    12054 > show #!8 models
    12055 
    12056 > select add #57
    12057 
    12058 197 atoms, 195 bonds, 1 pseudobond, 13 residues, 2 models selected 
    12059 
    12060 > select subtract #57
    12061 
    12062 Nothing selected 
    12063 
    12064 > select add #15
    12065 
    12066 209 atoms, 208 bonds, 15 residues, 1 model selected 
    12067 
    12068 > select subtract #15
    12069 
    12070 Nothing selected 
    12071 
    12072 > select add #14
    12073 
    12074 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    12075 
    12076 > hide #!8 models
    12077 
    12078 > select #57/o:132
    12079 
    12080 24 atoms, 23 bonds, 1 residue, 1 model selected 
    12081 
    12082 > select #14/o:131
    12083 
    12084 17 atoms, 16 bonds, 1 residue, 1 model selected 
    12085 
    12086 > show sel atoms
    12087 
    12088 > select #14/o:131
    12089 
    12090 17 atoms, 16 bonds, 1 residue, 1 model selected 
    12091 
    12092 > select #14/o:131
    12093 
    12094 17 atoms, 16 bonds, 1 residue, 1 model selected 
    12095 
    12096 > select #57/o:132
    12097 
    12098 24 atoms, 23 bonds, 1 residue, 1 model selected 
    12099 
    12100 > select #14/o:131
    12101 
    12102 17 atoms, 16 bonds, 1 residue, 1 model selected 
    12103 
    12104 > select #14/o:131@HB3
    12105 
    12106 1 atom, 1 residue, 1 model selected 
    12107 
    12108 > cofr sel
    12109 
    12110 > ui mousemode right "rotate selected models"
    12111 
    12112 > view matrix models
    12113 > #14,0.95749,0.28726,0.026545,-57.611,-0.21687,0.65605,0.72288,-48.743,0.19024,-0.69791,0.69046,173.42
    12114 
    12115 > view matrix models
    12116 > #14,0.98052,0.19259,-0.03849,-30.151,-0.12852,0.77739,0.61576,-70.642,0.14851,-0.59882,0.787,142.69
    12117 
    12118 > select #14/o:131
    12119 
    12120 17 atoms, 16 bonds, 1 residue, 1 model selected 
    12121 
    12122 > hide sel atoms
    12123 
    12124 > select clear
    12125 
    12126 > select #14/o:131
    12127 
    12128 17 atoms, 16 bonds, 1 residue, 1 model selected 
    12129 
    12130 > view matrix models
    12131 > #14,0.96641,0.14721,-0.21066,14.651,-0.035919,0.88902,0.45645,-81.457,0.25447,-0.43356,0.86445,73.257
    12132 
    12133 > ui mousemode right "translate selected models"
    12134 
    12135 > view matrix models
    12136 > #14,0.96641,0.14721,-0.21066,14.243,-0.035919,0.88902,0.45645,-81.703,0.25447,-0.43356,0.86445,71.325
    12137 
    12138 > view matrix models
    12139 > #14,0.96641,0.14721,-0.21066,15.814,-0.035919,0.88902,0.45645,-84.024,0.25447,-0.43356,0.86445,71.223
    12140 
    12141 > view matrix models
    12142 > #14,0.96641,0.14721,-0.21066,15.938,-0.035919,0.88902,0.45645,-83.939,0.25447,-0.43356,0.86445,71.056
    12143 
    12144 > view matrix models
    12145 > #14,0.96641,0.14721,-0.21066,15.95,-0.035919,0.88902,0.45645,-84.151,0.25447,-0.43356,0.86445,70.966
    12146 
    12147 > view matrix models
    12148 > #14,0.96641,0.14721,-0.21066,15.984,-0.035919,0.88902,0.45645,-84.115,0.25447,-0.43356,0.86445,70.827
    12149 
    12150 > view matrix models
    12151 > #14,0.96641,0.14721,-0.21066,16.014,-0.035919,0.88902,0.45645,-84.136,0.25447,-0.43356,0.86445,70.816
    12152 
    12153 > view matrix models
    12154 > #14,0.96641,0.14721,-0.21066,16.117,-0.035919,0.88902,0.45645,-84.15,0.25447,-0.43356,0.86445,71.057
    12155 
    12156 > show #!8 models
    12157 
    12158 > close #58-60
    12159 
    12160 > combine #13-18,57
    12161 
    12162 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12163 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12164 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12165 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12166 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12167 to 'q' 
    12168 
    12169 > combine #13-18,57
    12170 
    12171 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12172 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12173 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12174 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12175 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12176 to 'q' 
    12177 
    12178 > combine #13-18,57
    12179 
    12180 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12181 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12182 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12183 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12184 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12185 to 'q' 
    12186 
    12187 > select add #58
    12188 
    12189 2608 atoms, 2602 bonds, 4 pseudobonds, 168 residues, 3 models selected 
    12190 
    12191 > ui mousemode right "translate selected models"
    12192 
    12193 > view matrix models
    12194 > #14,0.96641,0.14721,-0.21066,11.039,-0.035919,0.88902,0.45645,-109.06,0.25447,-0.43356,0.86445,68.987,#58,0.79314,0.60856,-0.024242,-95.884,-0.59978,0.77354,-0.20468,157.32,-0.10581,0.17688,0.97853,-17.457
    12195 
    12196 > fitmap #58 inMap #8
    12197 
    12198 Fit molecule combination (#58) to map postprocess_masked330_onepf.mrc (#8)
    12199 using 2591 atoms 
    12200 average map value = 0.01184, steps = 104 
    12201 shifted from previous position = 4.53 
    12202 rotated from previous position = 7.3 degrees 
    12203 atoms outside contour = 1318, contour level = 0.0087645 
    12204  
    12205 Position of combination (#58) relative to postprocess_masked330_onepf.mrc (#8)
    12206 coordinates: 
    12207 Matrix rotation and translation 
    12208 0.72340790 0.68298775 -0.10103836 -79.88425710 
    12209 -0.68733769 0.69860901 -0.19877716 193.46185285 
    12210 -0.06517606 0.21324444 0.97482249 -31.41129711 
    12211 Axis 0.28784984 -0.02505441 -0.95734777 
    12212 Axis point 195.18686452 196.94825878 0.00000000 
    12213 Rotation angle (degrees) 45.69964666 
    12214 Shift along axis 2.22979268 
    12215  
    12216 
    12217 > select add #59
    12218 
    12219 5199 atoms, 5188 bonds, 8 pseudobonds, 335 residues, 5 models selected 
    12220 
    12221 > select subtract #58
    12222 
    12223 2608 atoms, 2602 bonds, 4 pseudobonds, 168 residues, 3 models selected 
    12224 
    12225 > view matrix models
    12226 > #14,0.96641,0.14721,-0.21066,5.673,-0.035919,0.88902,0.45645,-161.64,0.25447,-0.43356,0.86445,65.462,#59,0.79314,0.60856,-0.024242,-96.171,-0.59978,0.77354,-0.20468,129.66,-0.10581,0.17688,0.97853,-18.912
    12227 
    12228 > fitmap #59 inMap #8
    12229 
    12230 Fit molecule combination (#59) to map postprocess_masked330_onepf.mrc (#8)
    12231 using 2591 atoms 
    12232 average map value = 0.008645, steps = 176 
    12233 shifted from previous position = 6.32 
    12234 rotated from previous position = 13.3 degrees 
    12235 atoms outside contour = 1637, contour level = 0.0087645 
    12236  
    12237 Position of combination (#59) relative to postprocess_masked330_onepf.mrc (#8)
    12238 coordinates: 
    12239 Matrix rotation and translation 
    12240 0.65941397 0.73380172 -0.16342658 -65.76048439 
    12241 -0.75171214 0.64066505 -0.15645173 183.70936762 
    12242 -0.01010285 0.22601621 0.97407115 -44.43283811 
    12243 Axis 0.24809748 -0.09945731 -0.96361605 
    12244 Axis point 164.75436769 168.86761848 0.00000000 
    12245 Rotation angle (degrees) 50.42593976 
    12246 Shift along axis 8.22994619 
    12247  
    12248 
    12249 > select add #60
    12250 
    12251 5199 atoms, 5188 bonds, 8 pseudobonds, 335 residues, 5 models selected 
    12252 
    12253 > select subtract #59
    12254 
    12255 2608 atoms, 2602 bonds, 4 pseudobonds, 168 residues, 3 models selected 
    12256 
    12257 > view matrix models
    12258 > #14,0.96641,0.14721,-0.21066,3.9812,-0.035919,0.88902,0.45645,-135.7,0.25447,-0.43356,0.86445,66.518,#60,0.79314,0.60856,-0.024242,-92.497,-0.59978,0.77354,-0.20468,208.18,-0.10581,0.17688,0.97853,-14.332
    12259 
    12260 > undo
    12261 
    12262 [Repeated 7 time(s)]
    12263 
    12264 > ui mousemode right "translate selected models"
    12265 
    12266 > view matrix models
    12267 > #14,0.96641,0.14721,-0.21066,15.819,-0.035919,0.88902,0.45645,-84.136,0.25447,-0.43356,0.86445,70.511
    12268 
    12269 > view matrix models
    12270 > #14,0.96641,0.14721,-0.21066,15.997,-0.035919,0.88902,0.45645,-83.964,0.25447,-0.43356,0.86445,70.134
    12271 
    12272 > view matrix models
    12273 > #14,0.96641,0.14721,-0.21066,15.658,-0.035919,0.88902,0.45645,-83.786,0.25447,-0.43356,0.86445,69.803
    12274 
    12275 > hide #!60 models
    12276 
    12277 > hide #!59 models
    12278 
    12279 > hide #!58 models
    12280 
    12281 > select add #57
    12282 
    12283 214 atoms, 211 bonds, 1 pseudobond, 14 residues, 3 models selected 
    12284 
    12285 > select subtract #57
    12286 
    12287 17 atoms, 16 bonds, 1 residue, 1 model selected 
    12288 
    12289 > select add #14
    12290 
    12291 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    12292 
    12293 > select subtract #14
    12294 
    12295 Nothing selected 
    12296 
    12297 > select add #14
    12298 
    12299 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    12300 
    12301 > ui mousemode right "rotate selected models"
    12302 
    12303 > view matrix models
    12304 > #14,0.92754,0.36705,-0.070313,-48.918,-0.28584,0.81795,0.49925,-28.74,0.24076,-0.44298,0.8636,74.573
    12305 
    12306 > ui mousemode right "translate selected models"
    12307 
    12308 > view matrix models
    12309 > #14,0.92754,0.36705,-0.070313,-50.785,-0.28584,0.81795,0.49925,-26.44,0.24076,-0.44298,0.8636,74.752
    12310 
    12311 > view matrix models
    12312 > #14,0.92754,0.36705,-0.070313,-50.585,-0.28584,0.81795,0.49925,-26.516,0.24076,-0.44298,0.8636,74.743
    12313 
    12314 > ui mousemode right "translate selected models"
    12315 
    12316 > ui mousemode right "rotate selected models"
    12317 
    12318 > view matrix models
    12319 > #14,0.86984,0.47181,-0.14417,-47.047,-0.39183,0.83826,0.37919,12.628,0.29975,-0.27334,0.91402,18.642
    12320 
    12321 > ui mousemode right "translate selected models"
    12322 
    12323 > view matrix models
    12324 > #14,0.86984,0.47181,-0.14417,-47.56,-0.39183,0.83826,0.37919,12.717,0.29975,-0.27334,0.91402,15.127
    12325 
    12326 > view matrix models
    12327 > #14,0.86984,0.47181,-0.14417,-48.097,-0.39183,0.83826,0.37919,12.406,0.29975,-0.27334,0.91402,15.105
    12328 
    12329 > view matrix models
    12330 > #14,0.86984,0.47181,-0.14417,-47.937,-0.39183,0.83826,0.37919,11.702,0.29975,-0.27334,0.91402,15.923
    12331 
    12332 > view matrix models
    12333 > #14,0.86984,0.47181,-0.14417,-48.036,-0.39183,0.83826,0.37919,12.11,0.29975,-0.27334,0.91402,15.699
    12334 
    12335 > view matrix models
    12336 > #14,0.86984,0.47181,-0.14417,-48.702,-0.39183,0.83826,0.37919,12.145,0.29975,-0.27334,0.91402,16.298
    12337 
    12338 > select subtract #14
    12339 
    12340 Nothing selected 
    12341 
    12342 > combine #13-18,57
    12343 
    12344 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12345 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12346 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12347 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12348 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12349 to 'q' 
    12350 
    12351 > combine #13-18,57
    12352 
    12353 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12354 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12355 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12356 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12357 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12358 to 'q' 
    12359 
    12360 > combine #13-18,57
    12361 
    12362 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12363 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12364 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12365 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12366 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12367 to 'q' 
    12368 
    12369 > close #58-60
    12370 
    12371 > select add #61
    12372 
    12373 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    12374 
    12375 > ui mousemode right "translate selected models"
    12376 
    12377 > view matrix models
    12378 > #61,0.79314,0.60856,-0.024242,-95.157,-0.59978,0.77354,-0.20468,157.93,-0.10581,0.17688,0.97853,-17.598
    12379 
    12380 > fitmap #61 inMap #8
    12381 
    12382 Fit molecule combination (#61) to map postprocess_masked330_onepf.mrc (#8)
    12383 using 2591 atoms 
    12384 average map value = 0.01167, steps = 88 
    12385 shifted from previous position = 4.84 
    12386 rotated from previous position = 6.45 degrees 
    12387 atoms outside contour = 1329, contour level = 0.0087645 
    12388  
    12389 Position of combination (#61) relative to postprocess_masked330_onepf.mrc (#8)
    12390 coordinates: 
    12391 Matrix rotation and translation 
    12392 0.72716296 0.68550167 -0.03635234 -93.25529172 
    12393 -0.68175550 0.71496871 -0.15501352 178.17364319 
    12394 -0.08027124 0.13750350 0.98724329 -12.51901719 
    12395 Axis 0.20910684 0.03139559 -0.97738869 
    12396 Axis point 175.54784471 205.39983784 0.00000000 
    12397 Rotation angle (degrees) 44.38240726 
    12398 Shift along axis -1.67050748 
    12399  
    12400 
    12401 > select add #62
    12402 
    12403 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    12404 
    12405 > select subtract #61
    12406 
    12407 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    12408 
    12409 > view matrix models
    12410 > #62,0.79314,0.60856,-0.024242,-98.708,-0.59978,0.77354,-0.20468,129.38,-0.10581,0.17688,0.97853,-20.221
    12411 
    12412 > fitmap #62 inMap #8
    12413 
    12414 Fit molecule combination (#62) to map postprocess_masked330_onepf.mrc (#8)
    12415 using 2591 atoms 
    12416 average map value = 0.006763, steps = 68 
    12417 shifted from previous position = 5.31 
    12418 rotated from previous position = 3.67 degrees 
    12419 atoms outside contour = 1772, contour level = 0.0087645 
    12420  
    12421 Position of combination (#62) relative to postprocess_masked330_onepf.mrc (#8)
    12422 coordinates: 
    12423 Matrix rotation and translation 
    12424 0.82415686 0.56537942 -0.03334032 -91.74786585 
    12425 -0.56199508 0.80908875 -0.17186309 109.60395796 
    12426 -0.07019258 0.16037924 0.98455650 -20.41642587 
    12427 Axis 0.28254552 0.03133990 -0.95874180 
    12428 Axis point 127.12652693 200.35905569 0.00000000 
    12429 Rotation angle (degrees) 36.01129952 
    12430 Shift along axis -2.91389029 
    12431  
    12432 
    12433 > select add #63
    12434 
    12435 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    12436 
    12437 > select subtract #62
    12438 
    12439 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    12440 
    12441 > view matrix models
    12442 > #63,0.79314,0.60856,-0.024242,-89.308,-0.59978,0.77354,-0.20468,207.53,-0.10581,0.17688,0.97853,-13.035
    12443 
    12444 > fitmap #63 inMap #8
    12445 
    12446 Fit molecule combination (#63) to map postprocess_masked330_onepf.mrc (#8)
    12447 using 2591 atoms 
    12448 average map value = 0.01285, steps = 132 
    12449 shifted from previous position = 3.23 
    12450 rotated from previous position = 9.96 degrees 
    12451 atoms outside contour = 1265, contour level = 0.0087645 
    12452  
    12453 Position of combination (#63) relative to postprocess_masked330_onepf.mrc (#8)
    12454 coordinates: 
    12455 Matrix rotation and translation 
    12456 0.79088704 0.61115294 0.03146071 -102.31801641 
    12457 -0.60987973 0.79139101 -0.04179699 170.11847511 
    12458 -0.05044208 0.01386945 0.99863068 7.70878222 
    12459 Axis 0.04544044 0.06685713 -0.99672729 
    12460 Axis point 198.56302310 235.28730403 0.00000000 
    12461 Rotation angle (degrees) 37.77200725 
    12462 Shift along axis -0.95929534 
    12463  
    12464 
    12465 > color #61 #73fdffff
    12466 
    12467 > color #62 #76d6ffff
    12468 
    12469 > color #63 #ff85ffff
    12470 
    12471 > select clear
    12472 
    12473 > hide #!57,61-63 target m
    12474 
    12475 > hide #!13-19 target m
    12476 
    12477 > show #!9 models
    12478 
    12479 > hide #!8 models
    12480 
    12481 > hide #!9 models
    12482 
    12483 > show #!61-63 target m
    12484 
    12485 > show #!57 models
    12486 
    12487 > show #!13-18 target m
    12488 
    12489 > hide #!14 models
    12490 
    12491 > show #!14 models
    12492 
    12493 > select add #14
    12494 
    12495 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    12496 
    12497 > select add #13
    12498 
    12499 357 atoms, 355 bonds, 2 pseudobonds, 25 residues, 4 models selected 
    12500 
    12501 > select subtract #13
    12502 
    12503 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    12504 
    12505 > select add #15
    12506 
    12507 470 atoms, 468 bonds, 1 pseudobond, 32 residues, 3 models selected 
    12508 
    12509 > select subtract #15
    12510 
    12511 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    12512 
    12513 > select add #16
    12514 
    12515 502 atoms, 500 bonds, 1 pseudobond, 32 residues, 3 models selected 
    12516 
    12517 > select subtract #16
    12518 
    12519 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    12520 
    12521 > select add #17
    12522 
    12523 518 atoms, 519 bonds, 1 pseudobond, 32 residues, 3 models selected 
    12524 
    12525 > select subtract #17
    12526 
    12527 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    12528 
    12529 > select add #18
    12530 
    12531 1591 atoms, 1589 bonds, 2 pseudobonds, 101 residues, 4 models selected 
    12532 
    12533 > select subtract #18
    12534 
    12535 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    12536 
    12537 > select add #33
    12538 
    12539 2845 atoms, 2842 bonds, 4 pseudobonds, 183 residues, 4 models selected 
    12540 
    12541 > select subtract #33
    12542 
    12543 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    12544 
    12545 > select add #57
    12546 
    12547 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    12548 
    12549 > ui mousemode right "rotate selected models"
    12550 
    12551 > view matrix models
    12552 > #14,0.89894,0.3731,-0.22959,-16.973,-0.34639,0.9262,0.14888,28.376,0.26819,-0.054303,0.96183,-33.524,#57,0.85589,0.45056,-0.25389,-20.479,-0.43938,0.89243,0.10252,61.216,0.27277,0.023807,0.96178,-50.992
    12553 
    12554 > view matrix models
    12555 > #14,0.92224,0.26952,-0.27719,9.7336,-0.25555,0.96296,0.086052,14.731,0.29011,-0.0085242,0.95695,-46.68,#57,0.88966,0.34755,-0.29617,3.195,-0.35281,0.93495,0.037345,47.628,0.28989,0.071269,0.9544,-63.14
    12556 
    12557 > ui mousemode right "translate selected models"
    12558 
    12559 > view matrix models
    12560 > #14,0.92224,0.26952,-0.27719,10.856,-0.25555,0.96296,0.086052,15.487,0.29011,-0.0085242,0.95695,-49.797,#57,0.88966,0.34755,-0.29617,4.3175,-0.35281,0.93495,0.037345,48.385,0.28989,0.071269,0.9544,-66.256
    12561 
    12562 > view matrix models
    12563 > #14,0.92224,0.26952,-0.27719,10.764,-0.25555,0.96296,0.086052,15.006,0.29011,-0.0085242,0.95695,-50.12,#57,0.88966,0.34755,-0.29617,4.2251,-0.35281,0.93495,0.037345,47.903,0.28989,0.071269,0.9544,-66.58
    12564 
    12565 > select add #43
    12566 
    12567 3042 atoms, 3037 bonds, 5 pseudobonds, 196 residues, 6 models selected 
    12568 
    12569 > select subtract #43
    12570 
    12571 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    12572 
    12573 > select add #43
    12574 
    12575 3042 atoms, 3037 bonds, 5 pseudobonds, 196 residues, 6 models selected 
    12576 
    12577 > select subtract #43
    12578 
    12579 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    12580 
    12581 > select add #8
    12582 
    12583 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 6 models selected 
    12584 
    12585 > select subtract #8
    12586 
    12587 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    12588 
    12589 > show #!8 models
    12590 
    12591 > ui mousemode right "translate selected models"
    12592 
    12593 > view matrix models
    12594 > #14,0.92224,0.26952,-0.27719,11.219,-0.25555,0.96296,0.086052,15.331,0.29011,-0.0085242,0.95695,-50.53,#57,0.88966,0.34755,-0.29617,4.6807,-0.35281,0.93495,0.037345,48.229,0.28989,0.071269,0.9544,-66.99
    12595 
    12596 > ui mousemode right "rotate selected models"
    12597 
    12598 > view matrix models
    12599 > #14,0.95166,0.27886,-0.12876,-24.959,-0.2684,0.95883,0.092822,17.437,0.14935,-0.053775,0.98732,-19.07,#57,0.91803,0.3676,-0.14861,-33.431,-0.36516,0.92988,0.044396,50.382,0.15451,0.01351,0.9879,-34.523
    12600 
    12601 > view matrix models
    12602 > #14,0.95256,0.27914,-0.12125,-26.633,-0.26906,0.95861,0.093105,17.559,0.14222,-0.056064,0.98825,-17.361,#57,0.9189,0.36837,-0.14113,-35.197,-0.3658,0.92962,0.044694,50.507,0.14766,0.010556,0.98898,-32.755
    12603 
    12604 > close #61-63
    12605 
    12606 > combine #13-18,57
    12607 
    12608 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12609 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12610 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12611 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12612 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12613 to 'q' 
    12614 
    12615 > combine #13-18,57
    12616 
    12617 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12618 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12619 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12620 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12621 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12622 to 'q' 
    12623 
    12624 > combine #13-18,57
    12625 
    12626 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12627 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12628 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12629 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12630 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12631 to 'q' 
    12632 
    12633 > select subtract #57
    12634 
    12635 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    12636 
    12637 > select subtract #14
    12638 
    12639 Nothing selected 
    12640 
    12641 > select add #58
    12642 
    12643 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    12644 
    12645 > ui mousemode right "translate selected models"
    12646 
    12647 > view matrix models
    12648 > #58,0.79314,0.60856,-0.024242,-94.408,-0.59978,0.77354,-0.20468,155.13,-0.10581,0.17688,0.97853,-15.561
    12649 
    12650 > fitmap #58 inMap #8
    12651 
    12652 Fit molecule combination (#58) to map postprocess_masked330_onepf.mrc (#8)
    12653 using 2591 atoms 
    12654 average map value = 0.01093, steps = 196 
    12655 shifted from previous position = 4.5 
    12656 rotated from previous position = 9.81 degrees 
    12657 atoms outside contour = 1421, contour level = 0.0087645 
    12658  
    12659 Position of combination (#58) relative to postprocess_masked330_onepf.mrc (#8)
    12660 coordinates: 
    12661 Matrix rotation and translation 
    12662 0.70179770 0.71218639 0.01644775 -105.26319200 
    12663 -0.70639620 0.69870627 -0.11319873 178.53008290 
    12664 -0.09211074 0.06782398 0.99343622 5.43930489 
    12665 Axis 0.12621857 0.07569269 -0.98911045 
    12666 Axis point 161.74746308 214.61555211 0.00000000 
    12667 Rotation angle (degrees) 45.81558297 
    12668 Shift along axis -5.15281979 
    12669  
    12670 
    12671 > select add #59
    12672 
    12673 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    12674 
    12675 > select subtract #58
    12676 
    12677 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    12678 
    12679 > view matrix models
    12680 > #59,0.79314,0.60856,-0.024242,-97.069,-0.59978,0.77354,-0.20468,131.35,-0.10581,0.17688,0.97853,-15.562
    12681 
    12682 > fitmap #59 inMap #8
    12683 
    12684 Fit molecule combination (#59) to map postprocess_masked330_onepf.mrc (#8)
    12685 using 2591 atoms 
    12686 average map value = 0.00833, steps = 316 
    12687 shifted from previous position = 5.66 
    12688 rotated from previous position = 13.8 degrees 
    12689 atoms outside contour = 1627, contour level = 0.0087645 
    12690  
    12691 Position of combination (#59) relative to postprocess_masked330_onepf.mrc (#8)
    12692 coordinates: 
    12693 Matrix rotation and translation 
    12694 0.63607578 0.77094077 -0.03252577 -96.00329035 
    12695 -0.76833478 0.62890988 -0.11888659 181.19905140 
    12696 -0.07119874 0.10061156 0.99237496 -5.65834605 
    12697 Axis 0.14112662 0.02486484 -0.98967925 
    12698 Axis point 143.40902540 191.59368369 0.00000000 
    12699 Rotation angle (degrees) 51.04717499 
    12700 Shift along axis -3.44318661 
    12701  
    12702 
    12703 > select add #60
    12704 
    12705 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    12706 
    12707 > select subtract #59
    12708 
    12709 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    12710 
    12711 > view matrix models
    12712 > #60,0.79314,0.60856,-0.024242,-90.375,-0.59978,0.77354,-0.20468,207.25,-0.10581,0.17688,0.97853,-16.1
    12713 
    12714 > fitmap #60 inMap #8
    12715 
    12716 Fit molecule combination (#60) to map postprocess_masked330_onepf.mrc (#8)
    12717 using 2591 atoms 
    12718 average map value = 0.01256, steps = 140 
    12719 shifted from previous position = 2.67 
    12720 rotated from previous position = 13.2 degrees 
    12721 atoms outside contour = 1300, contour level = 0.0087645 
    12722  
    12723 Position of combination (#60) relative to postprocess_masked330_onepf.mrc (#8)
    12724 coordinates: 
    12725 Matrix rotation and translation 
    12726 0.77356630 0.62976959 0.07060767 -111.40537602 
    12727 -0.63143613 0.77542609 0.00167044 169.42512779 
    12728 -0.05369904 -0.04587643 0.99750277 22.88459313 
    12729 Axis -0.03749137 0.09801757 -0.99447823 
    12730 Axis point 182.34880026 242.57971802 0.00000000 
    12731 Rotation angle (degrees) 39.35357911 
    12732 Shift along axis -1.97485047 
    12733  
    12734 
    12735 > color #58 #00fa92ff
    12736 
    12737 > color #59 #7a81ffff
    12738 
    12739 > color #60 #ff8ad8ff
    12740 
    12741 > select clear
    12742 
    12743 > select add #15
    12744 
    12745 209 atoms, 208 bonds, 15 residues, 1 model selected 
    12746 
    12747 > select add #16
    12748 
    12749 450 atoms, 448 bonds, 30 residues, 2 models selected 
    12750 
    12751 > ui mousemode right "rotate selected models"
    12752 
    12753 > view matrix models
    12754 > #15,0.94641,-0.22975,-0.227,101.52,0.15981,0.94389,-0.28903,61.199,0.28066,0.23726,0.93002,-89.408,#16,0.90376,0.13377,-0.4066,71.502,-0.25256,0.93359,-0.25423,133.41,0.34559,0.33245,0.87752,-111.1
    12755 
    12756 > ui mousemode right "translate selected models"
    12757 
    12758 > view matrix models
    12759 > #15,0.94641,-0.22975,-0.227,100.65,0.15981,0.94389,-0.28903,61.18,0.28066,0.23726,0.93002,-87.113,#16,0.90376,0.13377,-0.4066,70.623,-0.25256,0.93359,-0.25423,133.39,0.34559,0.33245,0.87752,-108.81
    12760 
    12761 > view matrix models
    12762 > #15,0.94641,-0.22975,-0.227,101.51,0.15981,0.94389,-0.28903,61.005,0.28066,0.23726,0.93002,-87.053,#16,0.90376,0.13377,-0.4066,71.482,-0.25256,0.93359,-0.25423,133.22,0.34559,0.33245,0.87752,-108.75
    12763 
    12764 > view matrix models
    12765 > #15,0.94641,-0.22975,-0.227,101.23,0.15981,0.94389,-0.28903,61.137,0.28066,0.23726,0.93002,-86.019,#16,0.90376,0.13377,-0.4066,71.206,-0.25256,0.93359,-0.25423,133.35,0.34559,0.33245,0.87752,-107.72
    12766 
    12767 > ui mousemode right "rotate selected models"
    12768 
    12769 > view matrix models
    12770 > #15,0.94816,-0.21835,-0.2309,99.309,0.15621,0.95297,-0.25971,54.211,0.27675,0.21018,0.93767,-81.186,#16,0.90047,0.14496,-0.41004,70.175,-0.25359,0.94096,-0.22424,126.14,0.35333,0.30591,0.88407,-104.95
    12771 
    12772 > ui mousemode right "translate selected models"
    12773 
    12774 > view matrix models
    12775 > #15,0.94816,-0.21835,-0.2309,99.455,0.15621,0.95297,-0.25971,54.159,0.27675,0.21018,0.93767,-81.804,#16,0.90047,0.14496,-0.41004,70.321,-0.25359,0.94096,-0.22424,126.09,0.35333,0.30591,0.88407,-105.57
    12776 
    12777 > select clear
    12778 
    12779 > close #58-60
    12780 
    12781 > combine #13-18,57
    12782 
    12783 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12784 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12785 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12786 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12787 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12788 to 'q' 
    12789 
    12790 > combine #13-18,57
    12791 
    12792 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12793 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12794 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12795 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12796 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12797 to 'q' 
    12798 
    12799 > combine #13-18,57
    12800 
    12801 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    12802 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    12803 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    12804 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    12805 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    12806 to 'q' 
    12807 
    12808 > select add #58
    12809 
    12810 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    12811 
    12812 > ui mousemode right "translate selected models"
    12813 
    12814 > view matrix models
    12815 > #58,0.79314,0.60856,-0.024242,-95.542,-0.59978,0.77354,-0.20468,155.55,-0.10581,0.17688,0.97853,-17.551
    12816 
    12817 > fitmap #58 inMap #8
    12818 
    12819 Fit molecule combination (#58) to map postprocess_masked330_onepf.mrc (#8)
    12820 using 2591 atoms 
    12821 average map value = 0.01094, steps = 196 
    12822 shifted from previous position = 5.44 
    12823 rotated from previous position = 12.8 degrees 
    12824 atoms outside contour = 1420, contour level = 0.0087645 
    12825  
    12826 Position of combination (#58) relative to postprocess_masked330_onepf.mrc (#8)
    12827 coordinates: 
    12828 Matrix rotation and translation 
    12829 0.69470061 0.71864394 0.03069124 -108.86444101 
    12830 -0.71706453 0.69527244 -0.04913949 168.48052427 
    12831 -0.05665257 0.01212964 0.99832027 9.93059036 
    12832 Axis 0.04255785 0.06066944 -0.99725024 
    12833 Axis point 144.89683606 212.78650569 0.00000000 
    12834 Rotation angle (degrees) 46.04074395 
    12835 Shift along axis -4.31470019 
    12836  
    12837 
    12838 > select add #59
    12839 
    12840 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    12841 
    12842 > select subtract #58
    12843 
    12844 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    12845 
    12846 > view matrix models
    12847 > #59,0.79314,0.60856,-0.024242,-99.148,-0.59978,0.77354,-0.20468,133.17,-0.10581,0.17688,0.97853,-19.296
    12848 
    12849 > fitmap #59 inMap #8
    12850 
    12851 Fit molecule combination (#59) to map postprocess_masked330_onepf.mrc (#8)
    12852 using 2591 atoms 
    12853 average map value = 0.006696, steps = 100 
    12854 shifted from previous position = 4.35 
    12855 rotated from previous position = 7.81 degrees 
    12856 atoms outside contour = 1774, contour level = 0.0087645 
    12857  
    12858 Position of combination (#59) relative to postprocess_masked330_onepf.mrc (#8)
    12859 coordinates: 
    12860 Matrix rotation and translation 
    12861 0.82253175 0.56630384 -0.05235917 -87.83539594 
    12862 -0.56869658 0.81818493 -0.08460269 90.38881120 
    12863 -0.00507134 0.09936488 0.99503814 -21.31995137 
    12864 Axis 0.15986267 -0.04109181 -0.98628363 
    12865 Axis point 99.34135261 187.15810156 0.00000000 
    12866 Rotation angle (degrees) 35.12712443 
    12867 Shift along axis 3.27167819 
    12868  
    12869 
    12870 > select add #60
    12871 
    12872 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    12873 
    12874 > select subtract #59
    12875 
    12876 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    12877 
    12878 > view matrix models
    12879 > #60,0.79314,0.60856,-0.024242,-87.493,-0.59978,0.77354,-0.20468,203.73,-0.10581,0.17688,0.97853,-13.741
    12880 
    12881 > fitmap #60 inMap #8
    12882 
    12883 Fit molecule combination (#60) to map postprocess_masked330_onepf.mrc (#8)
    12884 using 2591 atoms 
    12885 average map value = 0.01248, steps = 144 
    12886 shifted from previous position = 4.36 
    12887 rotated from previous position = 15.2 degrees 
    12888 atoms outside contour = 1312, contour level = 0.0087645 
    12889  
    12890 Position of combination (#60) relative to postprocess_masked330_onepf.mrc (#8)
    12891 coordinates: 
    12892 Matrix rotation and translation 
    12893 0.77162500 0.63217433 0.07035958 -111.69461591 
    12894 -0.63538685 0.77121095 0.03895143 163.56425317 
    12895 -0.02963798 -0.07476145 0.99676091 24.74095134 
    12896 Axis -0.08907660 0.07833275 -0.99293975 
    12897 Axis point 171.61250867 238.93307512 0.00000000 
    12898 Rotation angle (degrees) 39.66420820 
    12899 Shift along axis -1.80445926 
    12900  
    12901 
    12902 > color #58 #fffc79ff
    12903 
    12904 > color #59 #73fdffff
    12905 
    12906 > color #60 #73fa79ff
    12907 
    12908 > select clear
    12909 
    12910 > select add #60
    12911 
    12912 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    12913 
    12914 > ui mousemode right "rotate selected models"
    12915 
    12916 > view matrix models
    12917 > #60,0.76644,0.64208,-0.01737,-95.081,-0.63465,0.75285,-0.17444,211.37,-0.098925,0.14472,0.98452,-9.4526
    12918 
    12919 > view matrix models
    12920 > #60,0.78224,0.62215,-0.032074,-90.612,-0.61063,0.75553,-0.23732,218.89,-0.12341,0.20522,0.9709,-15.72
    12921 
    12922 > ui mousemode right "translate selected models"
    12923 
    12924 > view matrix models
    12925 > #60,0.78224,0.62215,-0.032074,-90.726,-0.61063,0.75553,-0.23732,220.16,-0.12341,0.20522,0.9709,-15.903
    12926 
    12927 > view matrix models
    12928 > #60,0.78224,0.62215,-0.032074,-91.582,-0.61063,0.75553,-0.23732,220.51,-0.12341,0.20522,0.9709,-15.058
    12929 
    12930 > view matrix models
    12931 > #60,0.78224,0.62215,-0.032074,-91.596,-0.61063,0.75553,-0.23732,220.48,-0.12341,0.20522,0.9709,-15.154
    12932 
    12933 > select add #58
    12934 
    12935 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    12936 
    12937 > ui mousemode right "rotate selected models"
    12938 
    12939 > view matrix models
    12940 > #58,0.76349,0.64522,0.027778,-102.62,-0.64546,0.7638,-0.00054434,128.74,-0.021568,-0.017514,0.99961,10.695,#60,0.84052,0.54153,-0.016423,-90.155,-0.53389,0.82273,-0.19514,181.06,-0.092164,0.17279,0.98064,-16.954
    12941 
    12942 > undo
    12943 
    12944 > select subtract #60
    12945 
    12946 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    12947 
    12948 > view matrix models
    12949 > #58,0.75322,0.65735,0.023632,-105.03,-0.63531,0.73633,-0.23279,180.52,-0.17043,0.16033,0.97224,3.7415
    12950 
    12951 > ui mousemode right "translate selected models"
    12952 
    12953 > view matrix models
    12954 > #58,0.75322,0.65735,0.023632,-104.82,-0.63531,0.73633,-0.23279,180.29,-0.17043,0.16033,0.97224,3.2248
    12955 
    12956 > view matrix models
    12957 > #58,0.75322,0.65735,0.023632,-104.8,-0.63531,0.73633,-0.23279,180.28,-0.17043,0.16033,0.97224,3.2378
    12958 
    12959 > view matrix models
    12960 > #58,0.75322,0.65735,0.023632,-104.88,-0.63531,0.73633,-0.23279,180.4,-0.17043,0.16033,0.97224,3.6709
    12961 
    12962 > view matrix models
    12963 > #58,0.75322,0.65735,0.023632,-105.28,-0.63531,0.73633,-0.23279,180.28,-0.17043,0.16033,0.97224,4.4527
    12964 
    12965 > ui mousemode right "rotate selected models"
    12966 
    12967 > view matrix models
    12968 > #58,0.72544,0.6871,-0.040396,-93.497,-0.688,0.72221,-0.071165,160.81,-0.019723,0.079419,0.99665,-11.76
    12969 
    12970 > ui mousemode right "translate selected models"
    12971 
    12972 > view matrix models
    12973 > #58,0.72544,0.6871,-0.040396,-93.039,-0.688,0.72221,-0.071165,161.08,-0.019723,0.079419,0.99665,-13.573
    12974 
    12975 > ui mousemode right "rotate selected models"
    12976 
    12977 > view matrix models
    12978 > #58,0.78301,0.62196,-0.008341,-96.028,-0.61375,0.77035,-0.17283,156.19,-0.10107,0.14045,0.98492,-9.105
    12979 
    12980 > view matrix models
    12981 > #58,0.77058,0.63702,-0.020547,-94.527,-0.63452,0.76372,-0.11886,150.75,-0.060024,0.10463,0.9927,-10.587
    12982 
    12983 > show #!9 models
    12984 
    12985 > select add #9
    12986 
    12987 17829 atoms, 17833 bonds, 11 pseudobonds, 1145 residues, 4 models selected 
    12988 
    12989 > ui mousemode right "translate selected models"
    12990 
    12991 > view matrix models
    12992 > #9,1,0,0,9.0202,0,1,0,0.10633,0,0,1,-34.159,#58,0.77058,0.63702,-0.020547,-85.507,-0.63452,0.76372,-0.11886,150.86,-0.060024,0.10463,0.9927,-44.746
    12993 
    12994 > show #!7 models
    12995 
    12996 > volume #7 level 0.0122
    12997 
    12998 > hide #!9 models
    12999 
    13000 > show #!9 models
    13001 
    13002 > hide #!9 models
    13003 
    13004 > select subtract #9
    13005 
    13006 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13007 
    13008 > view matrix models
    13009 > #58,0.77058,0.63702,-0.020547,-95.293,-0.63452,0.76372,-0.11886,151.46,-0.060024,0.10463,0.9927,-10.285
    13010 
    13011 > fitmap #58 inMap #8
    13012 
    13013 Fit molecule combination (#58) to map postprocess_masked330_onepf.mrc (#8)
    13014 using 2591 atoms 
    13015 average map value = 0.01094, steps = 128 
    13016 shifted from previous position = 1.5 
    13017 rotated from previous position = 8.13 degrees 
    13018 atoms outside contour = 1427, contour level = 0.0087645 
    13019  
    13020 Position of combination (#58) relative to postprocess_masked330_onepf.mrc (#8)
    13021 coordinates: 
    13022 Matrix rotation and translation 
    13023 0.69460507 0.71873611 0.03069528 -108.85965070 
    13024 -0.71715590 0.69517716 -0.04915416 168.52136127 
    13025 -0.05666753 0.01212942 0.99831942 9.90464958 
    13026 Axis 0.04256242 0.06067485 -0.99724972 
    13027 Axis point 144.90811951 212.77829601 0.00000000 
    13028 Rotation angle (degrees) 46.04837141 
    13029 Shift along axis -4.28572979 
    13030  
    13031 
    13032 > hide #!8 models
    13033 
    13034 > hide #!7 models
    13035 
    13036 > show #!9 models
    13037 
    13038 > select add #28
    13039 
    13040 5175 atoms, 5168 bonds, 7 pseudobonds, 333 residues, 4 models selected 
    13041 
    13042 > select subtract #28
    13043 
    13044 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13045 
    13046 > select subtract #58
    13047 
    13048 Nothing selected 
    13049 
    13050 > select add #59
    13051 
    13052 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13053 
    13054 > ui mousemode right "translate selected models"
    13055 
    13056 [Repeated 1 time(s)]
    13057 
    13058 > view matrix models
    13059 > #59,0.82255,0.56636,-0.051519,-76.456,-0.56867,0.8182,-0.084669,89.174,-0.0058001,0.098942,0.99508,-19.46
    13060 
    13061 > view matrix models
    13062 > #59,0.82255,0.56636,-0.051519,-81.049,-0.56867,0.8182,-0.084669,89.967,-0.0058001,0.098942,0.99508,-20.794
    13063 
    13064 > view matrix models
    13065 > #59,0.82255,0.56636,-0.051519,-82.254,-0.56867,0.8182,-0.084669,88.666,-0.0058001,0.098942,0.99508,-20.929
    13066 
    13067 > hide #!9 models
    13068 
    13069 > select add #58
    13070 
    13071 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13072 
    13073 > select subtract #59
    13074 
    13075 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13076 
    13077 > ui mousemode right "rotate selected models"
    13078 
    13079 > view matrix models
    13080 > #58,0.72477,0.68835,0.029732,-107.77,-0.67578,0.71862,-0.16406,178.5,-0.1343,0.098816,0.986,7.8793
    13081 
    13082 > ui mousemode right "translate selected models"
    13083 
    13084 > view matrix models
    13085 > #58,0.72477,0.68835,0.029732,-107.35,-0.67578,0.71862,-0.16406,175.65,-0.1343,0.098816,0.986,6.3154
    13086 
    13087 > view matrix models
    13088 > #58,0.72477,0.68835,0.029732,-107.48,-0.67578,0.71862,-0.16406,174.22,-0.1343,0.098816,0.986,6.3212
    13089 
    13090 > ui mousemode right "rotate selected models"
    13091 
    13092 > view matrix models
    13093 > #58,0.76418,0.64362,0.042124,-107.54,-0.63511,0.76225,-0.12495,148.14,-0.11253,0.068728,0.99127,7.8485
    13094 
    13095 > ui mousemode right "translate selected models"
    13096 
    13097 > view matrix models
    13098 > #58,0.76418,0.64362,0.042124,-107.1,-0.63511,0.76225,-0.12495,149.09,-0.11253,0.068728,0.99127,8.0655
    13099 
    13100 > show #!8 models
    13101 
    13102 > select add #59
    13103 
    13104 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13105 
    13106 > select subtract #58
    13107 
    13108 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13109 
    13110 > ui mousemode right "rotate selected models"
    13111 
    13112 > view matrix models
    13113 > #59,0.78812,0.61254,-0.060414,-84.235,-0.61503,0.77978,-0.11696,113.28,-0.024533,0.12933,0.9913,-23.433
    13114 
    13115 > ui mousemode right "rotate selected models"
    13116 
    13117 > view matrix models
    13118 > #59,0.80814,0.58582,-0.060994,-81.934,-0.58875,0.80056,-0.11173,102.24,-0.016626,0.12621,0.99186,-24.394
    13119 
    13120 > ui mousemode right "translate selected models"
    13121 
    13122 > ui mousemode right "rotate selected models"
    13123 
    13124 > view matrix models
    13125 > #59,0.80255,0.59647,0.011305,-98.099,-0.59127,0.79779,-0.118,104.65,-0.0794,0.088014,0.99295,-3.4311
    13126 
    13127 > ui mousemode right "translate selected models"
    13128 
    13129 > view matrix models
    13130 > #59,0.80255,0.59647,0.011305,-98.614,-0.59127,0.79779,-0.118,104.78,-0.0794,0.088014,0.99295,-1.8343
    13131 
    13132 > hide #!8 models
    13133 
    13134 > ui mousemode right "translate selected models"
    13135 
    13136 > view matrix models
    13137 > #59,0.80255,0.59647,0.011305,-97.972,-0.59127,0.79779,-0.118,104.89,-0.0794,0.088014,0.99295,-4.0716
    13138 
    13139 > view matrix models
    13140 > #59,0.80255,0.59647,0.011305,-98.009,-0.59127,0.79779,-0.118,104.94,-0.0794,0.088014,0.99295,-4.3401
    13141 
    13142 > view matrix models
    13143 > #59,0.80255,0.59647,0.011305,-97.938,-0.59127,0.79779,-0.118,104.91,-0.0794,0.088014,0.99295,-4.2923
    13144 
    13145 > view matrix models
    13146 > #59,0.80255,0.59647,0.011305,-97.771,-0.59127,0.79779,-0.118,104.93,-0.0794,0.088014,0.99295,-4.6797
    13147 
    13148 > view matrix models
    13149 > #59,0.80255,0.59647,0.011305,-98.514,-0.59127,0.79779,-0.118,105.05,-0.0794,0.088014,0.99295,-4.9197
    13150 
    13151 > view matrix models
    13152 > #59,0.80255,0.59647,0.011305,-97.328,-0.59127,0.79779,-0.118,104.46,-0.0794,0.088014,0.99295,-4.6085
    13153 
    13154 > show #!8 models
    13155 
    13156 > select add #58
    13157 
    13158 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13159 
    13160 > view matrix models
    13161 > #58,0.76418,0.64362,0.042124,-104.28,-0.63511,0.76225,-0.12495,148.82,-0.11253,0.068728,0.99127,9.09,#59,0.80255,0.59647,0.011305,-94.511,-0.59127,0.79779,-0.118,104.19,-0.0794,0.088014,0.99295,-3.584
    13162 
    13163 > view matrix models
    13164 > #58,0.76418,0.64362,0.042124,-104.44,-0.63511,0.76225,-0.12495,148.02,-0.11253,0.068728,0.99127,9.1218,#59,0.80255,0.59647,0.011305,-94.672,-0.59127,0.79779,-0.118,103.39,-0.0794,0.088014,0.99295,-3.5522
    13165 
    13166 > select subtract #58
    13167 
    13168 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13169 
    13170 > view matrix models
    13171 > #59,0.80255,0.59647,0.011305,-90.294,-0.59127,0.79779,-0.118,100.69,-0.0794,0.088014,0.99295,-2.366
    13172 
    13173 > view matrix models
    13174 > #59,0.80255,0.59647,0.011305,-89.418,-0.59127,0.79779,-0.118,100.48,-0.0794,0.088014,0.99295,-2.1495
    13175 
    13176 > view matrix models
    13177 > #59,0.80255,0.59647,0.011305,-89.429,-0.59127,0.79779,-0.118,100.09,-0.0794,0.088014,0.99295,-2.1479
    13178 
    13179 > view matrix models
    13180 > #59,0.80255,0.59647,0.011305,-89.662,-0.59127,0.79779,-0.118,99.895,-0.0794,0.088014,0.99295,-1.4508
    13181 
    13182 > select clear
    13183 
    13184 > hide #!8 models
    13185 
    13186 > show #!8 models
    13187 
    13188 > hide #!8 models
    13189 
    13190 > show #!8 models
    13191 
    13192 > hide #!8 models
    13193 
    13194 > select add #15
    13195 
    13196 209 atoms, 208 bonds, 15 residues, 1 model selected 
    13197 
    13198 > ui mousemode right "translate selected models"
    13199 
    13200 > view matrix models
    13201 > #15,0.94816,-0.21835,-0.2309,99.187,0.15621,0.95297,-0.25971,54.235,0.27675,0.21018,0.93767,-80.986
    13202 
    13203 > show #!8 models
    13204 
    13205 > select add #14
    13206 
    13207 470 atoms, 468 bonds, 1 pseudobond, 32 residues, 3 models selected 
    13208 
    13209 > ui mousemode right "rotate selected models"
    13210 
    13211 > view matrix models
    13212 > #14,0.92065,0.39039,-0.0026041,-69.241,-0.37857,0.89435,0.23838,23.821,0.09539,-0.21848,0.97117,31.442,#15,0.98433,-0.072634,-0.16068,52.708,0.057113,0.99343,-0.099193,33.844,0.16683,0.088462,0.98201,-47.628
    13213 
    13214 > undo
    13215 
    13216 > select subtract #15
    13217 
    13218 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    13219 
    13220 > view matrix models
    13221 > #14,0.91445,0.40437,0.015951,-71.189,-0.39452,0.88199,0.25778,26.484,0.09017,-0.24202,0.96607,35.409
    13222 
    13223 > ui mousemode right "translate selected models"
    13224 
    13225 > view matrix models
    13226 > #14,0.91445,0.40437,0.015951,-72.761,-0.39452,0.88199,0.25778,27.784,0.09017,-0.24202,0.96607,37.99
    13227 
    13228 > view matrix models
    13229 > #14,0.91445,0.40437,0.015951,-72.639,-0.39452,0.88199,0.25778,27.291,0.09017,-0.24202,0.96607,37.774
    13230 
    13231 > hide #!58-60 target m
    13232 
    13233 > select subtract #14
    13234 
    13235 Nothing selected 
    13236 
    13237 > select add #18
    13238 
    13239 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    13240 
    13241 > select subtract #18
    13242 
    13243 Nothing selected 
    13244 
    13245 > select add #17
    13246 
    13247 257 atoms, 259 bonds, 15 residues, 1 model selected 
    13248 
    13249 > select add #16
    13250 
    13251 498 atoms, 499 bonds, 30 residues, 2 models selected 
    13252 
    13253 > select subtract #17
    13254 
    13255 241 atoms, 240 bonds, 15 residues, 1 model selected 
    13256 
    13257 > select add #15
    13258 
    13259 450 atoms, 448 bonds, 30 residues, 2 models selected 
    13260 
    13261 > ui mousemode right "translate selected models"
    13262 
    13263 > view matrix models
    13264 > #15,0.94816,-0.21835,-0.2309,100.58,0.15621,0.95297,-0.25971,54.077,0.27675,0.21018,0.93767,-81.23,#16,0.90047,0.14496,-0.41004,71.719,-0.25359,0.94096,-0.22424,125.93,0.35333,0.30591,0.88407,-105.81
    13265 
    13266 > ui mousemode right "rotate selected models"
    13267 
    13268 > view matrix models
    13269 > #15,0.95774,-0.13636,-0.25328,86.225,0.078837,0.97122,-0.22476,58.456,0.27663,0.19529,0.94092,-78.778,#16,0.87512,0.2245,-0.42868,63.632,-0.32419,0.92968,-0.17493,132.13,0.35926,0.29206,0.88636,-104.5
    13270 
    13271 > ui mousemode right "translate selected models"
    13272 
    13273 > view matrix models
    13274 > #15,0.95774,-0.13636,-0.25328,86.229,0.078837,0.97122,-0.22476,59.16,0.27663,0.19529,0.94092,-78.793,#16,0.87512,0.2245,-0.42868,63.635,-0.32419,0.92968,-0.17493,132.83,0.35926,0.29206,0.88636,-104.52
    13275 
    13276 > view matrix models
    13277 > #15,0.95774,-0.13636,-0.25328,86.361,0.078837,0.97122,-0.22476,58.842,0.27663,0.19529,0.94092,-78.884,#16,0.87512,0.2245,-0.42868,63.767,-0.32419,0.92968,-0.17493,132.52,0.35926,0.29206,0.88636,-104.61
    13278 
    13279 > ui mousemode right "rotate selected models"
    13280 
    13281 > view matrix models
    13282 > #15,0.9604,-0.12848,-0.24724,83.04,0.075884,0.97441,-0.2116,56.178,0.2681,0.18446,0.94557,-75.912,#16,0.87583,0.23285,-0.42274,60.722,-0.32555,0.93167,-0.16129,129.68,0.3563,0.27889,0.89178,-102.36
    13283 
    13284 > view matrix models
    13285 > #15,0.94047,-0.14485,-0.30746,102.07,0.095352,0.98075,-0.17038,43.025,0.32623,0.13092,0.93618,-74.272,#16,0.85221,0.20975,-0.47931,81.182,-0.30231,0.94512,-0.12391,115.08,0.42702,0.2505,0.86885,-105.45
    13286 
    13287 > ui mousemode right "translate selected models"
    13288 
    13289 > view matrix models
    13290 > #15,0.94047,-0.14485,-0.30746,102.55,0.095352,0.98075,-0.17038,42.535,0.32623,0.13092,0.93618,-75.904,#16,0.85221,0.20975,-0.47931,81.661,-0.30231,0.94512,-0.12391,114.59,0.42702,0.2505,0.86885,-107.08
    13291 
    13292 > view matrix models
    13293 > #15,0.94047,-0.14485,-0.30746,102.8,0.095352,0.98075,-0.17038,43.13,0.32623,0.13092,0.93618,-75.967,#16,0.85221,0.20975,-0.47931,81.907,-0.30231,0.94512,-0.12391,115.18,0.42702,0.2505,0.86885,-107.15
    13294 
    13295 > view matrix models
    13296 > #15,0.94047,-0.14485,-0.30746,102.79,0.095352,0.98075,-0.17038,43.253,0.32623,0.13092,0.93618,-75.892,#16,0.85221,0.20975,-0.47931,81.905,-0.30231,0.94512,-0.12391,115.31,0.42702,0.2505,0.86885,-107.07
    13297 
    13298 > view matrix models
    13299 > #15,0.94047,-0.14485,-0.30746,102.65,0.095352,0.98075,-0.17038,43.616,0.32623,0.13092,0.93618,-75.983,#16,0.85221,0.20975,-0.47931,81.763,-0.30231,0.94512,-0.12391,115.67,0.42702,0.2505,0.86885,-107.16
    13300 
    13301 > select clear
    13302 
    13303 > combine #13-18,57
    13304 
    13305 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    13306 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    13307 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    13308 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    13309 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    13310 to 'q' 
    13311 
    13312 > combine #13-18,57
    13313 
    13314 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    13315 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    13316 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    13317 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    13318 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    13319 to 'q' 
    13320 
    13321 > combine #13-18,57
    13322 
    13323 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    13324 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    13325 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    13326 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    13327 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    13328 to 'q' 
    13329 
    13330 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    13331 > MRCLaboratoryofMolecularBiology/Documents/Carter
    13332 > Lab/Diorge/Membranes/Fit14-12.cxs"
    13333 
    13334 [Repeated 1 time(s)]
    13335 
    13336 > select add #62
    13337 
    13338 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13339 
    13340 > ui mousemode right "rotate selected models"
    13341 
    13342 > ui mousemode right "translate selected models"
    13343 
    13344 > view matrix models
    13345 > #62,0.79314,0.60856,-0.024242,-92.079,-0.59978,0.77354,-0.20468,155.23,-0.10581,0.17688,0.97853,-13.838
    13346 
    13347 > fitmap #61 inMap #8
    13348 
    13349 Fit molecule combination (#61) to map postprocess_masked330_onepf.mrc (#8)
    13350 using 2591 atoms 
    13351 average map value = 0.01405, steps = 84 
    13352 shifted from previous position = 0.95 
    13353 rotated from previous position = 6.55 degrees 
    13354 atoms outside contour = 1074, contour level = 0.0087645 
    13355  
    13356 Position of combination (#61) relative to postprocess_masked330_onepf.mrc (#8)
    13357 coordinates: 
    13358 Matrix rotation and translation 
    13359 0.77599338 0.63073408 0.00296557 -98.49221931 
    13360 -0.62744331 0.77240784 -0.09849378 167.06073955 
    13361 -0.06441402 0.07456979 0.99513325 -2.84625734 
    13362 Axis 0.13607657 0.05297928 -0.98928073 
    13363 Axis point 185.94282828 221.81838968 0.00000000 
    13364 Rotation angle (degrees) 39.48714882 
    13365 Shift along axis -1.73597830 
    13366  
    13367 
    13368 > select add #61
    13369 
    13370 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13371 
    13372 > fitmap #62 inMap #8
    13373 
    13374 Fit molecule combination (#62) to map postprocess_masked330_onepf.mrc (#8)
    13375 using 2591 atoms 
    13376 average map value = 0.01144, steps = 116 
    13377 shifted from previous position = 2.97 
    13378 rotated from previous position = 8.78 degrees 
    13379 atoms outside contour = 1340, contour level = 0.0087645 
    13380  
    13381 Position of combination (#62) relative to postprocess_masked330_onepf.mrc (#8)
    13382 coordinates: 
    13383 Matrix rotation and translation 
    13384 0.72753599 0.68589596 0.01543072 -104.86672200 
    13385 -0.68156357 0.72514839 -0.09813724 164.21387837 
    13386 -0.07850150 0.06088136 0.99505325 3.66900088 
    13387 Axis 0.11524129 0.06807299 -0.99100228 
    13388 Axis point 155.18371807 213.77181298 0.00000000 
    13389 Rotation angle (degrees) 43.62517215 
    13390 Shift along axis -4.54243519 
    13391  
    13392 
    13393 > select subtract #62
    13394 
    13395 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13396 
    13397 > view matrix models
    13398 > #61,0.77596,0.63077,0.003806,-104.41,-0.62741,0.77242,-0.098558,112.81,-0.065107,0.074089,0.99512,0.089586
    13399 
    13400 > fitmap #61 inMap #8
    13401 
    13402 Fit molecule combination (#61) to map postprocess_masked330_onepf.mrc (#8)
    13403 using 2591 atoms 
    13404 average map value = 0.008545, steps = 164 
    13405 shifted from previous position = 5.54 
    13406 rotated from previous position = 10.5 degrees 
    13407 atoms outside contour = 1640, contour level = 0.0087645 
    13408  
    13409 Position of combination (#61) relative to postprocess_masked330_onepf.mrc (#8)
    13410 coordinates: 
    13411 Matrix rotation and translation 
    13412 0.64858494 0.76108270 -0.00952371 -101.72613501 
    13413 -0.75872616 0.64547932 -0.08769874 169.41495003 
    13414 -0.06059864 0.06410597 0.99610152 -0.36979116 
    13415 Axis 0.09933399 0.03342107 -0.99449273 
    13416 Axis point 132.64528401 194.37426694 0.00000000 
    13417 Rotation angle (degrees) 49.82810951 
    13418 Shift along axis -4.07507869 
    13419  
    13420 
    13421 > select add #63
    13422 
    13423 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13424 
    13425 > view matrix models
    13426 > #61,0.64856,0.76111,-0.0086828,-102.91,-0.7587,0.6455,-0.087764,191.95,-0.061193,0.063508,0.9961,-1.6785,#63,0.79314,0.60856,-0.024242,-91.693,-0.59978,0.77354,-0.20468,204.79,-0.10581,0.17688,0.97853,-16.964
    13427 
    13428 > undo
    13429 
    13430 > select subtract #61
    13431 
    13432 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13433 
    13434 > view matrix models
    13435 > #63,0.79314,0.60856,-0.024242,-91.114,-0.59978,0.77354,-0.20468,208.14,-0.10581,0.17688,0.97853,-17.096
    13436 
    13437 > fitmap #63 inMap #8
    13438 
    13439 Fit molecule combination (#63) to map postprocess_masked330_onepf.mrc (#8)
    13440 using 2591 atoms 
    13441 average map value = 0.01271, steps = 124 
    13442 shifted from previous position = 3.75 
    13443 rotated from previous position = 12.9 degrees 
    13444 atoms outside contour = 1293, contour level = 0.0087645 
    13445  
    13446 Position of combination (#63) relative to postprocess_masked330_onepf.mrc (#8)
    13447 coordinates: 
    13448 Matrix rotation and translation 
    13449 0.78836097 0.61210402 0.06177094 -108.54152155 
    13450 -0.61332134 0.78983292 0.00095034 162.40386879 
    13451 -0.04820701 -0.03863465 0.99808990 19.81797474 
    13452 Axis -0.03215711 0.08934127 -0.99548182 
    13453 Axis point 182.61439774 240.55624574 0.00000000 
    13454 Rotation angle (degrees) 37.98779403 
    13455 Shift along axis -1.72868454 
    13456  
    13457 
    13458 > select clear
    13459 
    13460 > color #62 #fffb00ff
    13461 
    13462 > color #63 #73fa79ff
    13463 
    13464 > color #61 #ff8ad8ff
    13465 
    13466 > select add #62
    13467 
    13468 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13469 
    13470 > select add #61
    13471 
    13472 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13473 
    13474 > ui mousemode right "translate selected models"
    13475 
    13476 > view matrix models
    13477 > #61,0.64856,0.76111,-0.0086828,-97.721,-0.7587,0.6455,-0.087764,166.2,-0.061193,0.063508,0.9961,0.54194,#62,0.72749,0.68592,0.016271,-100.86,-0.68153,0.72517,-0.098201,161,-0.079158,0.060351,0.99503,4.583
    13478 
    13479 > view matrix models
    13480 > #61,0.64856,0.76111,-0.0086828,-101.51,-0.7587,0.6455,-0.087764,168.17,-0.061193,0.063508,0.9961,-0.31003,#62,0.72749,0.68592,0.016271,-104.64,-0.68153,0.72517,-0.098201,162.97,-0.079158,0.060351,0.99503,3.7311
    13481 
    13482 > select subtract #62
    13483 
    13484 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13485 
    13486 > view matrix models
    13487 > #61,0.64856,0.76111,-0.0086828,-98.239,-0.7587,0.6455,-0.087764,167.27,-0.061193,0.063508,0.9961,0.58471
    13488 
    13489 > select add #59
    13490 
    13491 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13492 
    13493 > select subtract #59
    13494 
    13495 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13496 
    13497 > select add #60
    13498 
    13499 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13500 
    13501 > select subtract #60
    13502 
    13503 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13504 
    13505 > show #!59 models
    13506 
    13507 > hide #!59 models
    13508 
    13509 > show #!60 models
    13510 
    13511 > hide #!60 models
    13512 
    13513 > show #!59 models
    13514 
    13515 > hide #!59 models
    13516 
    13517 > show #!58 models
    13518 
    13519 > hide #!58 models
    13520 
    13521 > hide #!57 models
    13522 
    13523 > show #!57 models
    13524 
    13525 > select add #62
    13526 
    13527 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13528 
    13529 > select subtract #61
    13530 
    13531 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13532 
    13533 > view matrix models
    13534 > #62,0.72749,0.68592,0.016271,-102.45,-0.68153,0.72517,-0.098201,163.92,-0.079158,0.060351,0.99503,4.8475
    13535 
    13536 > ui mousemode right "rotate selected models"
    13537 
    13538 > view matrix models
    13539 > #62,0.75572,0.6503,-0.077463,-80.777,-0.64916,0.72821,-0.21976,181.48,-0.086498,0.21636,0.97247,-25.166
    13540 
    13541 > view matrix models
    13542 > #62,0.75845,0.6478,-0.071526,-81.949,-0.64784,0.73737,-0.19131,173.31,-0.071187,0.19143,0.97892,-23.765
    13543 
    13544 > select add #61
    13545 
    13546 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13547 
    13548 > select subtract #62
    13549 
    13550 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13551 
    13552 > view matrix models
    13553 > #61,0.81371,0.58073,0.02499,-96.289,-0.58021,0.81407,-0.025376,80.063,-0.035081,0.0061493,0.99937,7.9783
    13554 
    13555 > ui mousemode right "translate selected models"
    13556 
    13557 > view matrix models
    13558 > #61,0.81371,0.58073,0.02499,-96.774,-0.58021,0.81407,-0.025376,76.326,-0.035081,0.0061493,0.99937,8.1563
    13559 
    13560 > view matrix models
    13561 > #61,0.81371,0.58073,0.02499,-98.211,-0.58021,0.81407,-0.025376,76.426,-0.035081,0.0061493,0.99937,8.8286
    13562 
    13563 > view matrix models
    13564 > #61,0.81371,0.58073,0.02499,-93.912,-0.58021,0.81407,-0.025376,77.267,-0.035081,0.0061493,0.99937,12.772
    13565 
    13566 > view matrix models
    13567 > #61,0.81371,0.58073,0.02499,-94.12,-0.58021,0.81407,-0.025376,76.076,-0.035081,0.0061493,0.99937,12.564
    13568 
    13569 > ui mousemode right "rotate selected models"
    13570 
    13571 > view matrix models
    13572 > #61,0.7597,0.6498,0.024986,-99.323,-0.64792,0.75966,-0.055845,108.34,-0.055268,0.026236,0.99813,12.194
    13573 
    13574 > ui mousemode right "translate selected models"
    13575 
    13576 > view matrix models
    13577 > #61,0.7597,0.6498,0.024986,-98.876,-0.64792,0.75966,-0.055845,110.72,-0.055268,0.026236,0.99813,11.567
    13578 
    13579 > view matrix models
    13580 > #61,0.7597,0.6498,0.024986,-100.06,-0.64792,0.75966,-0.055845,110.08,-0.055268,0.026236,0.99813,11.562
    13581 
    13582 > view matrix models
    13583 > #61,0.7597,0.6498,0.024986,-99.137,-0.64792,0.75966,-0.055845,108.67,-0.055268,0.026236,0.99813,11.482
    13584 
    13585 > ui mousemode right "rotate selected models"
    13586 
    13587 [Repeated 1 time(s)]
    13588 
    13589 > view matrix models
    13590 > #61,0.76344,0.64482,-0.037071,-86.114,-0.64588,0.76201,-0.046745,105.87,-0.0018936,0.05963,0.99822,-6.8892
    13591 
    13592 > ui mousemode right "translate selected models"
    13593 
    13594 > view matrix models
    13595 > #61,0.76344,0.64482,-0.037071,-87.283,-0.64588,0.76201,-0.046745,105.78,-0.0018936,0.05963,0.99822,-8.75
    13596 
    13597 > select add #62
    13598 
    13599 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13600 
    13601 > select subtract #61
    13602 
    13603 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13604 
    13605 > ui mousemode right "rotate selected models"
    13606 
    13607 > view matrix models
    13608 > #62,0.75318,0.62487,0.20554,-131.94,-0.57236,0.77654,-0.26342,163.88,-0.32422,0.080757,0.94253,59.624
    13609 
    13610 > view matrix models
    13611 > #62,0.76542,0.62564,0.15073,-123.4,-0.58094,0.77251,-0.2564,165.1,-0.27685,0.10869,0.95475,41.247
    13612 
    13613 > view matrix models
    13614 > #62,0.778,0.62403,0.072857,-109.71,-0.59241,0.76726,-0.24567,166.41,-0.20921,0.14797,0.96661,16.28
    13615 
    13616 > view matrix models
    13617 > #62,0.76588,0.637,0.087467,-113.26,-0.61818,0.76691,-0.17236,156.72,-0.17687,0.077937,0.98114,23.073
    13618 
    13619 > view matrix models
    13620 > #62,0.76212,0.641,0.091061,-114.17,-0.62535,0.76523,-0.15283,154.57,-0.16765,0.05953,0.98405,24.899
    13621 
    13622 > view matrix models
    13623 > #62,0.79249,0.60829,0.044147,-103.12,-0.57952,0.77361,-0.25631,164.54,-0.19006,0.17754,0.96559,5.8395
    13624 
    13625 > view matrix models
    13626 > #62,0.7742,0.63057,0.054646,-106.76,-0.61166,0.76759,-0.19152,159.16,-0.16271,0.11485,0.97997,11.958
    13627 
    13628 > select add #61
    13629 
    13630 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13631 
    13632 > view matrix models
    13633 > #61,0.7807,0.62485,0.0085679,-94.791,-0.59501,0.74747,-0.29538,150.04,-0.19097,0.2255,0.95534,-4.9438,#62,0.78334,0.61291,0.10347,-114.84,-0.52142,0.73856,-0.42738,195.78,-0.33837,0.28083,0.89813,29.162
    13634 
    13635 > undo
    13636 
    13637 > select subtract #62
    13638 
    13639 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13640 
    13641 > view matrix models
    13642 > #61,0.76465,0.59953,-0.23638,-36.53,-0.64438,0.71647,-0.26729,160.85,0.0091135,0.3567,0.93417,-66.591
    13643 
    13644 > view matrix models
    13645 > #61,0.76122,0.64661,0.049395,-104.84,-0.6171,0.74569,-0.25127,145.4,-0.19931,0.16079,0.96666,13.61
    13646 
    13647 > view matrix models
    13648 > #61,0.85065,0.52175,0.064492,-96.861,-0.49615,0.8373,-0.22971,95.748,-0.17385,0.16341,0.97112,7.027
    13649 
    13650 > view matrix models
    13651 > #61,0.84784,0.52812,0.047456,-94.308,-0.44096,0.75196,-0.49001,157.41,-0.29447,0.39453,0.87042,-1.8958
    13652 
    13653 > view matrix models
    13654 > #61,0.85835,0.51007,0.055445,-93.851,-0.42265,0.7642,-0.4872,150.36,-0.29088,0.39476,0.87153,-2.8887
    13655 
    13656 > view matrix models
    13657 > #61,0.88423,0.4643,0.050615,-87.447,-0.38665,0.7885,-0.4783,135.76,-0.26198,0.40336,0.87674,-11.692
    13658 
    13659 > view matrix models
    13660 > #61,0.87901,0.4749,-0.042561,-69.911,-0.43817,0.76937,-0.46484,147.71,-0.18801,0.42725,0.88437,-33.504
    13661 
    13662 > view matrix models
    13663 > #61,0.89003,0.45485,-0.031015,-69.82,-0.41703,0.78474,-0.45856,138.67,-0.18424,0.42106,0.88812,-33.588
    13664 
    13665 > view matrix models
    13666 > #61,0.83235,0.55362,0.02651,-92.857,-0.54327,0.82438,-0.15891,93.723,-0.10983,0.11786,0.98694,1.5846
    13667 
    13668 > view matrix models
    13669 > #61,0.77949,0.6252,0.03897,-101.41,-0.60973,0.77152,-0.18161,123.8,-0.14361,0.1178,0.9826,9.2107
    13670 
    13671 > view matrix models
    13672 > #61,0.8215,0.56723,0.058222,-100.29,-0.55722,0.82026,-0.12915,91.405,-0.12101,0.073652,0.98991,13.427
    13673 
    13674 > select add #63
    13675 
    13676 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13677 
    13678 > select subtract #61
    13679 
    13680 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13681 
    13682 > view matrix models
    13683 > #63,0.61208,0.7899,0.03769,-109.75,-0.78545,0.61278,-0.086977,255.48,-0.091798,0.023633,0.9955,14.651
    13684 
    13685 > undo
    13686 
    13687 > view matrix models
    13688 > #63,0.82988,0.55675,0.036327,-98.969,-0.53723,0.81497,-0.21729,185.79,-0.15058,0.16081,0.97543,-1.2687
    13689 
    13690 > undo
    13691 
    13692 > view matrix models
    13693 > #63,0.81315,0.57985,0.050676,-103.89,-0.57032,0.81112,-0.12967,175.46,-0.11629,0.07654,0.99026,8.3652
    13694 
    13695 > ui mousemode right "translate selected models"
    13696 
    13697 > view matrix models
    13698 > #63,0.81315,0.57985,0.050676,-104.23,-0.57032,0.81112,-0.12967,178.23,-0.11629,0.07654,0.99026,7.554
    13699 
    13700 > ui mousemode right "rotate selected models"
    13701 
    13702 > view matrix models
    13703 > #63,0.78029,0.62409,0.040757,-105.89,-0.61282,0.77595,-0.14953,198.86,-0.12494,0.091697,0.98792,6.25
    13704 
    13705 > view matrix models
    13706 > #63,0.78978,0.60728,-0.086326,-78.056,-0.61277,0.77487,-0.15519,200.25,-0.027352,0.17546,0.98411,-31.78
    13707 
    13708 > ui mousemode right "translate selected models"
    13709 
    13710 > view matrix models
    13711 > #63,0.78978,0.60728,-0.086326,-82.297,-0.61277,0.77487,-0.15519,203.74,-0.027352,0.17546,0.98411,-32.342
    13712 
    13713 > undo
    13714 
    13715 > select add #61
    13716 
    13717 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    13718 
    13719 > select subtract #63
    13720 
    13721 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13722 
    13723 > view matrix models
    13724 > #61,0.8215,0.56723,0.058222,-102.81,-0.55722,0.82026,-0.12915,93.468,-0.12101,0.073652,0.98991,13.093
    13725 
    13726 > view matrix models
    13727 > #61,0.8215,0.56723,0.058222,-101.08,-0.55722,0.82026,-0.12915,96.52,-0.12101,0.073652,0.98991,13.12
    13728 
    13729 > ui mousemode right "rotate selected models"
    13730 
    13731 > view matrix models
    13732 > #61,0.75539,0.65364,0.046285,-105.46,-0.6417,0.75219,-0.14975,133.27,-0.1327,0.083416,0.98764,13.653
    13733 
    13734 > ui mousemode right "translate selected models"
    13735 
    13736 > view matrix models
    13737 > #61,0.75539,0.65364,0.046285,-109.03,-0.6417,0.75219,-0.14975,132.75,-0.1327,0.083416,0.98764,12.472
    13738 
    13739 > ui mousemode right "rotate selected models"
    13740 
    13741 > view matrix models
    13742 > #61,0.71508,0.6986,0.024882,-107.04,-0.68502,0.70739,-0.17421,156.71,-0.1393,0.10753,0.98439,8.874
    13743 
    13744 > hide #!61 models
    13745 
    13746 > hide #!62 models
    13747 
    13748 > hide #!63 models
    13749 
    13750 > hide #!54-63 target m
    13751 
    13752 > hide #!10-21 target m
    13753 
    13754 > hide #!8 models
    13755 
    13756 > show #!9 models
    13757 
    13758 > hide #!9 models
    13759 
    13760 > show #!13-18 target m
    13761 
    13762 > show #!55 models
    13763 
    13764 > hide #!55 models
    13765 
    13766 > show #!57 models
    13767 
    13768 > show #!61 models
    13769 
    13770 > show #!62 models
    13771 
    13772 > show #!63 models
    13773 
    13774 > hide #!55-63 target m
    13775 
    13776 > hide #!11-21 target m
    13777 
    13778 > show #!9 models
    13779 
    13780 > hide #!9 models
    13781 
    13782 > show #!13-18 target m
    13783 
    13784 > show #!57 models
    13785 
    13786 > show #!61 models
    13787 
    13788 > hide #!61 models
    13789 
    13790 > show #!8 models
    13791 
    13792 > select add #14
    13793 
    13794 2852 atoms, 2846 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    13795 
    13796 > select subtract #14
    13797 
    13798 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13799 
    13800 > select add #15
    13801 
    13802 2800 atoms, 2794 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    13803 
    13804 > select subtract #15
    13805 
    13806 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    13807 
    13808 > select add #16
    13809 
    13810 2832 atoms, 2826 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    13811 
    13812 > view matrix models
    13813 > #16,0.86074,0.23566,-0.45121,69.095,-0.26632,0.96387,-0.0046236,81.728,0.43382,0.12415,0.89241,-85.608,#61,0.69709,0.71482,0.055666,-114.8,-0.71296,0.6993,-0.05161,141.06,-0.075819,-0.0037103,0.99711,30.404
    13814 
    13815 > ui mousemode right "translate selected models"
    13816 
    13817 > view matrix models
    13818 > #16,0.86074,0.23566,-0.45121,68.887,-0.26632,0.96387,-0.0046236,81.486,0.43382,0.12415,0.89241,-86.586,#61,0.69709,0.71482,0.055666,-115.01,-0.71296,0.6993,-0.05161,140.82,-0.075819,-0.0037103,0.99711,29.426
    13819 
    13820 > view matrix models
    13821 > #16,0.86074,0.23566,-0.45121,68.559,-0.26632,0.96387,-0.0046236,81.579,0.43382,0.12415,0.89241,-86.73,#61,0.69709,0.71482,0.055666,-115.33,-0.71296,0.6993,-0.05161,140.91,-0.075819,-0.0037103,0.99711,29.282
    13822 
    13823 > view matrix models
    13824 > #16,0.86074,0.23566,-0.45121,68.504,-0.26632,0.96387,-0.0046236,81.581,0.43382,0.12415,0.89241,-86.735,#61,0.69709,0.71482,0.055666,-115.39,-0.71296,0.6993,-0.05161,140.91,-0.075819,-0.0037103,0.99711,29.277
    13825 
    13826 > view matrix models
    13827 > #16,0.86074,0.23566,-0.45121,68.517,-0.26632,0.96387,-0.0046236,81.629,0.43382,0.12415,0.89241,-86.062,#61,0.69709,0.71482,0.055666,-115.37,-0.71296,0.6993,-0.05161,140.96,-0.075819,-0.0037103,0.99711,29.95
    13828 
    13829 > ui mousemode right "rotate selected models"
    13830 
    13831 > view matrix models
    13832 > #16,0.87498,0.20071,-0.4406,71.37,-0.21782,0.97592,0.012008,66.696,0.4324,0.085466,0.89762,-78.421,#61,0.72246,0.68798,0.068827,-113.3,-0.68895,0.7247,-0.012203,123.46,-0.058274,-0.038602,0.99755,37.644
    13833 
    13834 > ui mousemode right "translate selected models"
    13835 
    13836 > view matrix models
    13837 > #16,0.87498,0.20071,-0.4406,70.383,-0.21782,0.97592,0.012008,66.454,0.4324,0.085466,0.89762,-78.787,#61,0.72246,0.68798,0.068827,-114.28,-0.68895,0.7247,-0.012203,123.22,-0.058274,-0.038602,0.99755,37.278
    13838 
    13839 > ui mousemode right "rotate selected models"
    13840 
    13841 > view matrix models
    13842 > #16,0.90366,0.077388,-0.42119,87.979,-0.11298,0.99177,-0.060167,57.342,0.41307,0.10196,0.90497,-80.162,#61,0.80247,0.59001,0.089044,-100.11,-0.59068,0.80662,-0.021433,88.141,-0.08447,-0.035397,0.9958,40.13
    13843 
    13844 > ui mousemode right "translate selected models"
    13845 
    13846 > view matrix models
    13847 > #16,0.90366,0.077388,-0.42119,87.467,-0.11298,0.99177,-0.060167,57.78,0.41307,0.10196,0.90497,-80.147,#61,0.80247,0.59001,0.089044,-100.62,-0.59068,0.80662,-0.021433,88.579,-0.08447,-0.035397,0.9958,40.145
    13848 
    13849 > view matrix models
    13850 > #16,0.90366,0.077388,-0.42119,86.937,-0.11298,0.99177,-0.060167,58.047,0.41307,0.10196,0.90497,-80.363,#61,0.80247,0.59001,0.089044,-101.15,-0.59068,0.80662,-0.021433,88.845,-0.08447,-0.035397,0.9958,39.929
    13851 
    13852 > view matrix models
    13853 > #16,0.90366,0.077388,-0.42119,86.898,-0.11298,0.99177,-0.060167,58.482,0.41307,0.10196,0.90497,-80.571,#61,0.80247,0.59001,0.089044,-101.19,-0.59068,0.80662,-0.021433,89.281,-0.08447,-0.035397,0.9958,39.721
    13854 
    13855 > view matrix models
    13856 > #16,0.90366,0.077388,-0.42119,86.963,-0.11298,0.99177,-0.060167,58.191,0.41307,0.10196,0.90497,-80.565,#61,0.80247,0.59001,0.089044,-101.12,-0.59068,0.80662,-0.021433,88.989,-0.08447,-0.035397,0.9958,39.727
    13857 
    13858 > select clear
    13859 
    13860 > combine #13-18,57
    13861 
    13862 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    13863 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    13864 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    13865 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    13866 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    13867 to 'q' 
    13868 
    13869 > combine #13-18,57
    13870 
    13871 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    13872 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    13873 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    13874 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    13875 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    13876 to 'q' 
    13877 
    13878 > combine #13-18,57
    13879 
    13880 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    13881 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    13882 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    13883 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    13884 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    13885 to 'q' 
    13886 
    13887 > select add #14
    13888 
    13889 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    13890 
    13891 > select subtract #14
    13892 
    13893 Nothing selected 
    13894 
    13895 > select add #13
    13896 
    13897 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    13898 
    13899 > select subtract #13
    13900 
    13901 Nothing selected 
    13902 
    13903 > select add #16
    13904 
    13905 241 atoms, 240 bonds, 15 residues, 1 model selected 
    13906 
    13907 > select subtract #16
    13908 
    13909 Nothing selected 
    13910 
    13911 > select add #17
    13912 
    13913 257 atoms, 259 bonds, 15 residues, 1 model selected 
    13914 
    13915 > select subtract #17
    13916 
    13917 Nothing selected 
    13918 
    13919 > select add #15
    13920 
    13921 209 atoms, 208 bonds, 15 residues, 1 model selected 
    13922 
    13923 > select subtract #15
    13924 
    13925 Nothing selected 
    13926 
    13927 > select add #18
    13928 
    13929 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    13930 
    13931 > select subtract #18
    13932 
    13933 Nothing selected 
    13934 
    13935 > mmaker #64/9 to #18/9
    13936 
    13937 No 'to' model specified 
    13938 
    13939 > mmaker #64/9 #18/9
    13940 
    13941 > matchmaker #64/9 #18/9
    13942 
    13943 Missing required "to" argument 
    13944 
    13945 > mmaker #64/9 to #18/9
    13946 
    13947 No 'to' model specified 
    13948 
    13949 > hide #!64 models
    13950 
    13951 > hide #!65 models
    13952 
    13953 > hide #!66 models
    13954 
    13955 > mmaker #64/9 to #18/6
    13956 
    13957 Parameters 
    13958 --- 
    13959 Chain pairing | bb 
    13960 Alignment algorithm | Needleman-Wunsch 
    13961 Similarity matrix | BLOSUM-62 
    13962 SS fraction | 0.3 
    13963 Gap open (HH/SS/other) | 18/18/6 
    13964 Gap extend | 1 
    13965 SS matrix |  |  | H | S | O 
    13966 ---|---|---|--- 
    13967 H | 6 | -9 | -6 
    13968 S |  | 6 | -6 
    13969 O |  |  | 4 
    13970 Iteration cutoff | 2 
    13971  
    13972 Matchmaker copy of copy of copy of pointy-1pf.pdb, chain 6 (#18) with
    13973 combination, chain 9 (#64), sequence alignment score = 670.7 
    13974 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    13975 0.000) 
    13976  
    13977 
    13978 > hide #!18 models
    13979 
    13980 > show #!18 models
    13981 
    13982 > ui tool show Matchmaker
    13983 
    13984 > matchmaker #18/6 to #64/9 pairing ss
    13985 
    13986 Parameters 
    13987 --- 
    13988 Chain pairing | ss 
    13989 Alignment algorithm | Needleman-Wunsch 
    13990 Similarity matrix | BLOSUM-62 
    13991 SS fraction | 0.3 
    13992 Gap open (HH/SS/other) | 18/18/6 
    13993 Gap extend | 1 
    13994 SS matrix |  |  | H | S | O 
    13995 ---|---|---|--- 
    13996 H | 6 | -9 | -6 
    13997 S |  | 6 | -6 
    13998 O |  |  | 4 
    13999 Iteration cutoff | 2 
    14000  
    14001 Matchmaker combination, chain 9 (#64) with copy of copy of copy of
    14002 pointy-1pf.pdb, chain 6 (#18), sequence alignment score = 670.7 
    14003 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    14004 0.000) 
    14005  
    14006 
    14007 > hide #!57 models
    14008 
    14009 > show #!57 models
    14010 
    14011 > hide #!18 models
    14012 
    14013 > show #!18 models
    14014 
    14015 > show #!60 models
    14016 
    14017 > hide #!60 models
    14018 
    14019 > show #!61 models
    14020 
    14021 > hide #!61 models
    14022 
    14023 > show #!61 models
    14024 
    14025 > hide #!61 models
    14026 
    14027 > show #!62 models
    14028 
    14029 > show #!63 models
    14030 
    14031 > show #!61 models
    14032 
    14033 > select add #61
    14034 
    14035 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    14036 
    14037 > view matrix models
    14038 > #61,0.80247,0.59001,0.089044,-113.29,-0.59068,0.80662,-0.021433,80.056,-0.08447,-0.035397,0.9958,33.742
    14039 
    14040 > view matrix models
    14041 > #61,0.80247,0.59001,0.089044,-111.28,-0.59068,0.80662,-0.021433,80.098,-0.08447,-0.035397,0.9958,27.586
    14042 
    14043 > view matrix models
    14044 > #61,0.80247,0.59001,0.089044,-111.32,-0.59068,0.80662,-0.021433,82.794,-0.08447,-0.035397,0.9958,27.752
    14045 
    14046 > ui mousemode right "rotate selected models"
    14047 
    14048 > view matrix models
    14049 > #61,0.67078,0.73602,0.09121,-119.28,-0.73113,0.67689,-0.08524,153.74,-0.12448,-0.0095093,0.99218,30.474
    14050 
    14051 > ui mousemode right "translate selected models"
    14052 
    14053 > view matrix models
    14054 > #61,0.67078,0.73602,0.09121,-115.61,-0.73113,0.67689,-0.08524,153.19,-0.12448,-0.0095093,0.99218,31.299
    14055 
    14056 > ui mousemode right "rotate selected models"
    14057 
    14058 > view matrix models
    14059 > #61,0.70613,0.70806,-0.0047673,-96.678,-0.68782,0.68431,-0.24213,174.75,-0.16818,0.17426,0.97023,1.9886
    14060 
    14061 > view matrix models
    14062 > #61,0.70865,0.70523,0.021645,-101.89,-0.68254,0.69298,-0.23223,169.68,-0.17877,0.14979,0.97242,9.3073
    14063 
    14064 > view matrix models
    14065 > #61,0.72125,0.68186,0.12193,-119.39,-0.65458,0.7285,-0.20202,149.75,-0.22657,0.065891,0.97176,38.358
    14066 
    14067 > view matrix models
    14068 > #61,0.7177,0.68651,0.11666,-118.69,-0.66495,0.7254,-0.17787,147.63,-0.20673,0.050084,0.97711,36.972
    14069 
    14070 > view matrix models
    14071 > #61,0.73054,0.67663,0.092164,-113.98,-0.66231,0.73493,-0.14568,138.36,-0.16631,0.045384,0.98503,28.396
    14072 
    14073 > view matrix models
    14074 > #61,0.72451,0.67788,0.12475,-119.7,-0.65586,0.73367,-0.1777,143.87,-0.21198,0.046924,0.97615,38.945
    14075 
    14076 > view matrix models
    14077 > #61,0.73381,0.67463,0.079964,-111.69,-0.65822,0.73518,-0.16206,140.81,-0.16812,0.066285,0.98354,24.228
    14078 
    14079 > ui mousemode right "translate selected models"
    14080 
    14081 > view matrix models
    14082 > #61,0.73381,0.67463,0.079964,-112.07,-0.65822,0.73518,-0.16206,140.97,-0.16812,0.066285,0.98354,25.38
    14083 
    14084 > ui mousemode right "rotate selected models"
    14085 
    14086 > view matrix models
    14087 > #61,0.75321,0.65307,0.078546,-110.67,-0.63785,0.75434,-0.15532,131.11,-0.16068,0.066887,0.98474,23.516
    14088 
    14089 > view matrix models
    14090 > #61,0.75867,0.64925,0.05383,-105.84,-0.63571,0.75585,-0.15673,130.62,-0.14244,0.084687,0.98617,15.476
    14091 
    14092 > view matrix models
    14093 > #61,0.75812,0.6495,0.058332,-106.71,-0.63563,0.75598,-0.15639,130.51,-0.14568,0.081487,0.98597,16.9
    14094 
    14095 > select add #62
    14096 
    14097 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    14098 
    14099 > view matrix models
    14100 > #61,0.76141,0.64762,0.029126,-101.06,-0.63617,0.75508,-0.15857,131.26,-0.12469,0.10221,0.98692,7.7311,#62,0.77801,0.62773,0.025581,-100.93,-0.61218,0.76663,-0.19368,159.93,-0.14119,0.13503,0.98073,2.8523
    14101 
    14102 > mmaker #64/9 to #61/9 pairing ss
    14103 
    14104 Parameters 
    14105 --- 
    14106 Chain pairing | ss 
    14107 Alignment algorithm | Needleman-Wunsch 
    14108 Similarity matrix | BLOSUM-62 
    14109 SS fraction | 0.3 
    14110 Gap open (HH/SS/other) | 18/18/6 
    14111 Gap extend | 1 
    14112 SS matrix |  |  | H | S | O 
    14113 ---|---|---|--- 
    14114 H | 6 | -9 | -6 
    14115 S |  | 6 | -6 
    14116 O |  |  | 4 
    14117 Iteration cutoff | 2 
    14118  
    14119 Matchmaker combination, chain 9 (#61) with combination, chain 9 (#64),
    14120 sequence alignment score = 674.3 
    14121 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    14122 0.000) 
    14123  
    14124 
    14125 > show #!64 models
    14126 
    14127 > hide #!61 models
    14128 
    14129 > show #!61 models
    14130 
    14131 > close #64-66
    14132 
    14133 Traceback (most recent call last): 
    14134 File
    14135 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    14136 packages/chimerax/core/triggerset.py", line 138, in invoke 
    14137 return self._func(self._name, data) 
    14138 File
    14139 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    14140 packages/chimerax/ui/widgets/item_chooser.py", line 389, in _items_change 
    14141 item_names = self._item_names() 
    14142 File
    14143 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    14144 packages/chimerax/ui/widgets/item_chooser.py", line 47, in _item_names 
    14145 values = [v for v in self.list_func() if self.filter_func(v)] 
    14146 File
    14147 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    14148 packages/chimerax/ui/widgets/item_chooser.py", line 47, in   
    14149 values = [v for v in self.list_func() if self.filter_func(v)] 
    14150 File
    14151 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    14152 packages/chimerax/match_maker/tool.py", line 497, in   
    14153 filter_func=lambda c, ref=chain: c.structure != ref.structure) 
    14154 AttributeError: 'Sequence' object has no attribute 'structure' 
    14155  
    14156 Error processing trigger "changes": 
    14157 AttributeError: 'Sequence' object has no attribute 'structure' 
    14158  
    14159 File
    14160 "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
    14161 packages/chimerax/match_maker/tool.py", line 497, in 
    14162 filter_func=lambda c, ref=chain: c.structure != ref.structure) 
    14163  
    14164 See log for complete Python traceback. 
    14165  
    14166 
    14167 > select add #18
    14168 
    14169 6512 atoms, 6501 bonds, 9 pseudobonds, 418 residues, 6 models selected 
    14170 
    14171 > select subtract #61
    14172 
    14173 3921 atoms, 3915 bonds, 5 pseudobonds, 251 residues, 4 models selected 
    14174 
    14175 > select subtract #62
    14176 
    14177 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    14178 
    14179 > select subtract #18
    14180 
    14181 Nothing selected 
    14182 
    14183 > select add #17
    14184 
    14185 257 atoms, 259 bonds, 15 residues, 1 model selected 
    14186 
    14187 > select subtract #17
    14188 
    14189 Nothing selected 
    14190 
    14191 > select add #16
    14192 
    14193 241 atoms, 240 bonds, 15 residues, 1 model selected 
    14194 
    14195 > select subtract #16
    14196 
    14197 Nothing selected 
    14198 
    14199 > select add #15
    14200 
    14201 209 atoms, 208 bonds, 15 residues, 1 model selected 
    14202 
    14203 > select subtract #15
    14204 
    14205 Nothing selected 
    14206 
    14207 > select add #14
    14208 
    14209 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14210 
    14211 > ui mousemode right "rotate selected models"
    14212 
    14213 > view matrix models
    14214 > #14,0.88118,0.45265,0.13652,-99.055,-0.47062,0.81219,0.34476,39.981,0.045177,-0.36804,0.92871,79.66
    14215 
    14216 > ui mousemode right "translate selected models"
    14217 
    14218 > view matrix models
    14219 > #14,0.88118,0.45265,0.13652,-99.604,-0.47062,0.81219,0.34476,41.351,0.045177,-0.36804,0.92871,81.705
    14220 
    14221 > view matrix models
    14222 > #14,0.88118,0.45265,0.13652,-99.427,-0.47062,0.81219,0.34476,41.268,0.045177,-0.36804,0.92871,81.867
    14223 
    14224 > select add #13
    14225 
    14226 357 atoms, 355 bonds, 2 pseudobonds, 25 residues, 4 models selected 
    14227 
    14228 > select subtract #13
    14229 
    14230 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14231 
    14232 > select add #15
    14233 
    14234 470 atoms, 468 bonds, 1 pseudobond, 32 residues, 3 models selected 
    14235 
    14236 > select subtract #15
    14237 
    14238 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14239 
    14240 > select add #16
    14241 
    14242 502 atoms, 500 bonds, 1 pseudobond, 32 residues, 3 models selected 
    14243 
    14244 > select subtract #16
    14245 
    14246 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14247 
    14248 > select add #17
    14249 
    14250 518 atoms, 519 bonds, 1 pseudobond, 32 residues, 3 models selected 
    14251 
    14252 > select subtract #17
    14253 
    14254 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14255 
    14256 > select add #57
    14257 
    14258 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    14259 
    14260 > select subtract #14
    14261 
    14262 197 atoms, 195 bonds, 1 pseudobond, 13 residues, 2 models selected 
    14263 
    14264 > ui mousemode right "rotate selected models"
    14265 
    14266 > view matrix models
    14267 > #57,0.89406,0.44602,-0.041505,-67.072,-0.44085,0.89254,0.095015,63.951,0.079423,-0.066652,0.99461,-2.9614
    14268 
    14269 > ui mousemode right "translate selected models"
    14270 
    14271 > view matrix models
    14272 > #57,0.89406,0.44602,-0.041505,-66.695,-0.44085,0.89254,0.095015,64.304,0.079423,-0.066652,0.99461,-2.7655
    14273 
    14274 > view matrix models
    14275 > #57,0.89406,0.44602,-0.041505,-66.715,-0.44085,0.89254,0.095015,64.039,0.079423,-0.066652,0.99461,-2.6853
    14276 
    14277 > view matrix models
    14278 > #57,0.89406,0.44602,-0.041505,-66.709,-0.44085,0.89254,0.095015,64.333,0.079423,-0.066652,0.99461,-2.5051
    14279 
    14280 > view matrix models
    14281 > #57,0.89406,0.44602,-0.041505,-66.806,-0.44085,0.89254,0.095015,64.317,0.079423,-0.066652,0.99461,-2.6626
    14282 
    14283 > view matrix models
    14284 > #57,0.89406,0.44602,-0.041505,-66.735,-0.44085,0.89254,0.095015,64.24,0.079423,-0.066652,0.99461,-3.0032
    14285 
    14286 > view matrix models
    14287 > #57,0.89406,0.44602,-0.041505,-66.648,-0.44085,0.89254,0.095015,64.337,0.079423,-0.066652,0.99461,-2.9852
    14288 
    14289 > select clear
    14290 
    14291 > combine #13-18,57
    14292 
    14293 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    14294 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    14295 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    14296 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    14297 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    14298 to 'q' 
    14299 
    14300 > mmaker #64/9 to #61/9 pairing ss
    14301 
    14302 Parameters 
    14303 --- 
    14304 Chain pairing | ss 
    14305 Alignment algorithm | Needleman-Wunsch 
    14306 Similarity matrix | BLOSUM-62 
    14307 SS fraction | 0.3 
    14308 Gap open (HH/SS/other) | 18/18/6 
    14309 Gap extend | 1 
    14310 SS matrix |  |  | H | S | O 
    14311 ---|---|---|--- 
    14312 H | 6 | -9 | -6 
    14313 S |  | 6 | -6 
    14314 O |  |  | 4 
    14315 Iteration cutoff | 2 
    14316  
    14317 Matchmaker combination, chain 9 (#61) with combination, chain 9 (#64),
    14318 sequence alignment score = 674.3 
    14319 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    14320 0.000) 
    14321  
    14322 
    14323 > combine #13-18,57
    14324 
    14325 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    14326 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    14327 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    14328 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    14329 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    14330 to 'q' 
    14331 
    14332 > mmaker #64/9 to #63/9 pairing ss
    14333 
    14334 Parameters 
    14335 --- 
    14336 Chain pairing | ss 
    14337 Alignment algorithm | Needleman-Wunsch 
    14338 Similarity matrix | BLOSUM-62 
    14339 SS fraction | 0.3 
    14340 Gap open (HH/SS/other) | 18/18/6 
    14341 Gap extend | 1 
    14342 SS matrix |  |  | H | S | O 
    14343 ---|---|---|--- 
    14344 H | 6 | -9 | -6 
    14345 S |  | 6 | -6 
    14346 O |  |  | 4 
    14347 Iteration cutoff | 2 
    14348  
    14349 Matchmaker combination, chain 9 (#63) with combination, chain 9 (#64),
    14350 sequence alignment score = 674.3 
    14351 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    14352 0.000) 
    14353  
    14354 
    14355 > mmaker #65/9 to #61/9 pairing ss
    14356 
    14357 Parameters 
    14358 --- 
    14359 Chain pairing | ss 
    14360 Alignment algorithm | Needleman-Wunsch 
    14361 Similarity matrix | BLOSUM-62 
    14362 SS fraction | 0.3 
    14363 Gap open (HH/SS/other) | 18/18/6 
    14364 Gap extend | 1 
    14365 SS matrix |  |  | H | S | O 
    14366 ---|---|---|--- 
    14367 H | 6 | -9 | -6 
    14368 S |  | 6 | -6 
    14369 O |  |  | 4 
    14370 Iteration cutoff | 2 
    14371  
    14372 Matchmaker combination, chain 9 (#61) with combination, chain 9 (#65),
    14373 sequence alignment score = 674.3 
    14374 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    14375 0.000) 
    14376  
    14377 
    14378 > close #64-65
    14379 
    14380 > select add #18
    14381 
    14382 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    14383 
    14384 > select subtract #18
    14385 
    14386 Nothing selected 
    14387 
    14388 > select add #15
    14389 
    14390 209 atoms, 208 bonds, 15 residues, 1 model selected 
    14391 
    14392 > select subtract #15
    14393 
    14394 Nothing selected 
    14395 
    14396 > select add #57
    14397 
    14398 197 atoms, 195 bonds, 1 pseudobond, 13 residues, 2 models selected 
    14399 
    14400 > select subtract #57
    14401 
    14402 Nothing selected 
    14403 
    14404 > select add #15
    14405 
    14406 209 atoms, 208 bonds, 15 residues, 1 model selected 
    14407 
    14408 > select subtract #15
    14409 
    14410 Nothing selected 
    14411 
    14412 > select add #14
    14413 
    14414 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14415 
    14416 > select subtract #14
    14417 
    14418 Nothing selected 
    14419 
    14420 > select add #14
    14421 
    14422 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14423 
    14424 > select add #13
    14425 
    14426 357 atoms, 355 bonds, 2 pseudobonds, 25 residues, 4 models selected 
    14427 
    14428 > select subtract #13
    14429 
    14430 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14431 
    14432 > select add #13
    14433 
    14434 357 atoms, 355 bonds, 2 pseudobonds, 25 residues, 4 models selected 
    14435 
    14436 > select subtract #13
    14437 
    14438 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14439 
    14440 > select add #15
    14441 
    14442 470 atoms, 468 bonds, 1 pseudobond, 32 residues, 3 models selected 
    14443 
    14444 > select subtract #15
    14445 
    14446 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14447 
    14448 > select add #16
    14449 
    14450 502 atoms, 500 bonds, 1 pseudobond, 32 residues, 3 models selected 
    14451 
    14452 > select subtract #16
    14453 
    14454 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14455 
    14456 > select add #17
    14457 
    14458 518 atoms, 519 bonds, 1 pseudobond, 32 residues, 3 models selected 
    14459 
    14460 > select subtract #17
    14461 
    14462 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14463 
    14464 > select add #18
    14465 
    14466 1591 atoms, 1589 bonds, 2 pseudobonds, 101 residues, 4 models selected 
    14467 
    14468 > select subtract #18
    14469 
    14470 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14471 
    14472 > select add #57
    14473 
    14474 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    14475 
    14476 > ui mousemode right "rotate selected models"
    14477 
    14478 > view matrix models
    14479 > #14,0.91262,0.38944,0.12437,-89.746,-0.40622,0.82961,0.38306,17.626,0.046,-0.40011,0.91531,91.121,#57,0.92383,0.38121,-0.034748,-59.811,-0.37453,0.91892,0.12373,40.196,0.0791,-0.1013,0.99171,5.0922
    14480 
    14481 > view matrix models
    14482 > #14,0.87622,0.37688,0.30034,-113.93,-0.481,0.72235,0.49684,33.106,-0.029699,-0.5798,0.81422,163.65,#57,0.89497,0.42433,0.13775,-97.003,-0.44611,0.85403,0.26763,40.112,-0.0040752,-0.30097,0.95362,71.615
    14483 
    14484 > view matrix models
    14485 > #14,0.87626,0.35732,0.32324,-114.19,-0.47706,0.73757,0.47792,32.747,-0.067649,-0.57299,0.81677,169.11,#57,0.89568,0.41274,0.16555,-100.05,-0.44274,0.86258,0.24481,42.051,-0.041753,-0.29257,0.95533,76.807
    14486 
    14487 > view matrix models
    14488 > #14,0.83337,0.35589,0.4229,-124.75,-0.51011,0.78982,0.34056,54.585,-0.21281,-0.49954,0.83975,177.35,#57,0.85717,0.44323,0.2623,-117.93,-0.48086,0.87115,0.099343,75.923,-0.18447,-0.21128,0.95986,86.221
    14489 
    14490 > view matrix models
    14491 > #14,0.8555,0.3476,0.38379,-119.75,-0.47648,0.81861,0.32069,45.737,-0.2027,-0.45722,0.86594,161.31,#57,0.87742,0.42269,0.22686,-110.56,-0.44764,0.89144,0.070374,70.737,-0.17248,-0.1633,0.97138,71.332
    14492 
    14493 > ui mousemode right "translate selected models"
    14494 
    14495 > view matrix models
    14496 > #14,0.8555,0.3476,0.38379,-120.36,-0.47648,0.81861,0.32069,46.23,-0.2027,-0.45722,0.86594,162.61,#57,0.87742,0.42269,0.22686,-111.16,-0.44764,0.89144,0.070374,71.23,-0.17248,-0.1633,0.97138,72.63
    14497 
    14498 > view matrix models
    14499 > #14,0.8555,0.3476,0.38379,-119.89,-0.47648,0.81861,0.32069,46.122,-0.2027,-0.45722,0.86594,162.87,#57,0.87742,0.42269,0.22686,-110.7,-0.44764,0.89144,0.070374,71.121,-0.17248,-0.1633,0.97138,72.883
    14500 
    14501 > ui mousemode right "rotate selected models"
    14502 
    14503 > view matrix models
    14504 > #14,0.9039,0.29023,0.3142,-103.68,-0.39835,0.83876,0.37121,16.84,-0.1558,-0.4607,0.87377,152.95,#57,0.92172,0.34531,0.17658,-92.893,-0.36703,0.92376,0.10936,40.901,-0.12536,-0.16561,0.97819,62.887
    14505 
    14506 > view matrix models
    14507 > #14,0.90391,0.24173,0.35288,-100.81,-0.38375,0.82269,0.41943,8.087,-0.18892,-0.51454,0.8364,178.08,#57,0.92258,0.31103,0.22828,-95.742,-0.35061,0.92282,0.15962,28.114,-0.16101,-0.2273,0.96042,86.541
    14508 
    14509 > view matrix models
    14510 > #14,0.89761,0.26248,0.35413,-104.25,-0.39471,0.83626,0.38063,14.827,-0.19623,-0.48143,0.85423,169.01,#57,0.9167,0.33135,0.22331,-98.001,-0.36302,0.92416,0.11896,38.152,-0.16696,-0.19012,0.96746,78.331
    14511 
    14512 > view matrix models
    14513 > #14,0.92213,0.1702,0.34742,-88.081,-0.32964,0.81573,0.47532,-11.768,-0.2025,-0.55283,0.80831,194.31,#57,0.9393,0.24077,0.24444,-87.023,-0.29423,0.93171,0.21294,4.8657,-0.17648,-0.27194,0.946,101.96
    14514 
    14515 > view matrix models
    14516 > #14,0.92431,0.24536,0.29233,-93.873,-0.35847,0.82101,0.44433,-1.2942,-0.13099,-0.51549,0.84682,164.98,#57,0.94036,0.29531,0.16885,-84.257,-0.3243,0.9281,0.1829,17.33,-0.1027,-0.22675,0.96852,73.51
    14517 
    14518 > view matrix models
    14519 > #14,0.91484,0.28929,0.28175,-99.337,-0.38332,0.84158,0.38053,11.492,-0.12703,-0.45613,0.8808,145.01,#57,0.93121,0.33414,0.14562,-86.306,-0.35156,0.92885,0.11681,35.331,-0.096227,-0.15997,0.98242,55.184
    14520 
    14521 > view matrix models
    14522 > #14,0.91038,0.27654,0.30779,-100.78,-0.38712,0.83192,0.39755,11.002,-0.14612,-0.48107,0.86442,157.21,#57,0.92767,0.33013,0.17447,-90.371,-0.35477,0.92499,0.1361,33.031,-0.11645,-0.18816,0.97521,66.581
    14523 
    14524 > view matrix models
    14525 > #14,0.91335,0.28175,0.29395,-99.799,-0.38284,0.84008,0.38431,10.988,-0.13866,-0.46355,0.87516,149.95,#57,0.93012,0.33075,0.15959,-88.087,-0.35094,0.92857,0.12085,34.486,-0.10822,-0.16841,0.97976,59.85
    14526 
    14527 > select subtract #57
    14528 
    14529 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14530 
    14531 > select subtract #14
    14532 
    14533 Nothing selected 
    14534 
    14535 > select add #13
    14536 
    14537 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    14538 
    14539 > ui mousemode right "translate selected models"
    14540 
    14541 > view matrix models
    14542 > #13,0.79314,0.60856,-0.024242,-90.601,-0.59978,0.77354,-0.20468,182.51,-0.10581,0.17688,0.97853,-16.135
    14543 
    14544 > ui mousemode right "rotate selected models"
    14545 
    14546 > view matrix models
    14547 > #13,0.80774,0.58433,-0.078183,-77.194,-0.57444,0.75028,-0.32727,206.88,-0.13257,0.30926,0.94169,-35.529
    14548 
    14549 > view matrix models
    14550 > #13,0.72714,0.68586,-0.029519,-95.003,-0.66467,0.69261,-0.28017,229.68,-0.17171,0.22334,0.9595,-10.45
    14551 
    14552 > ui mousemode right "translate selected models"
    14553 
    14554 > view matrix models
    14555 > #13,0.72714,0.68586,-0.029519,-94.145,-0.66467,0.69261,-0.28017,229.53,-0.17171,0.22334,0.9595,-10.907
    14556 
    14557 > select clear
    14558 
    14559 > combine #13-18,57
    14560 
    14561 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    14562 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    14563 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    14564 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    14565 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    14566 to 'q' 
    14567 
    14568 > combine #13-18,57
    14569 
    14570 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    14571 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    14572 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    14573 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    14574 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    14575 to 'q' 
    14576 
    14577 > mmaker #64/9 to #63/9 pairing ss
    14578 
    14579 Parameters 
    14580 --- 
    14581 Chain pairing | ss 
    14582 Alignment algorithm | Needleman-Wunsch 
    14583 Similarity matrix | BLOSUM-62 
    14584 SS fraction | 0.3 
    14585 Gap open (HH/SS/other) | 18/18/6 
    14586 Gap extend | 1 
    14587 SS matrix |  |  | H | S | O 
    14588 ---|---|---|--- 
    14589 H | 6 | -9 | -6 
    14590 S |  | 6 | -6 
    14591 O |  |  | 4 
    14592 Iteration cutoff | 2 
    14593  
    14594 Matchmaker combination, chain 9 (#63) with combination, chain 9 (#64),
    14595 sequence alignment score = 674.3 
    14596 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    14597 0.000) 
    14598  
    14599 
    14600 > mmaker #65/9 to #61/9 pairing ss
    14601 
    14602 Parameters 
    14603 --- 
    14604 Chain pairing | ss 
    14605 Alignment algorithm | Needleman-Wunsch 
    14606 Similarity matrix | BLOSUM-62 
    14607 SS fraction | 0.3 
    14608 Gap open (HH/SS/other) | 18/18/6 
    14609 Gap extend | 1 
    14610 SS matrix |  |  | H | S | O 
    14611 ---|---|---|--- 
    14612 H | 6 | -9 | -6 
    14613 S |  | 6 | -6 
    14614 O |  |  | 4 
    14615 Iteration cutoff | 2 
    14616  
    14617 Matchmaker combination, chain 9 (#61) with combination, chain 9 (#65),
    14618 sequence alignment score = 674.3 
    14619 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    14620 0.000) 
    14621  
    14622 
    14623 > combine #13-18,57
    14624 
    14625 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    14626 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    14627 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    14628 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    14629 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    14630 to 'q' 
    14631 
    14632 > mmaker #66/9 to #62/9 pairing ss
    14633 
    14634 Parameters 
    14635 --- 
    14636 Chain pairing | ss 
    14637 Alignment algorithm | Needleman-Wunsch 
    14638 Similarity matrix | BLOSUM-62 
    14639 SS fraction | 0.3 
    14640 Gap open (HH/SS/other) | 18/18/6 
    14641 Gap extend | 1 
    14642 SS matrix |  |  | H | S | O 
    14643 ---|---|---|--- 
    14644 H | 6 | -9 | -6 
    14645 S |  | 6 | -6 
    14646 O |  |  | 4 
    14647 Iteration cutoff | 2 
    14648  
    14649 Matchmaker combination, chain 9 (#62) with combination, chain 9 (#66),
    14650 sequence alignment score = 674.3 
    14651 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    14652 0.000) 
    14653  
    14654 
    14655 > hide #!63 models
    14656 
    14657 > hide #!62 models
    14658 
    14659 > hide #!61 models
    14660 
    14661 > color #64 #7a81ffff
    14662 
    14663 > color #65 #fffc79ff
    14664 
    14665 > color #66 #ff2600ff
    14666 
    14667 > select add #65
    14668 
    14669 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    14670 
    14671 > ui mousemode right "rotate selected models"
    14672 
    14673 > view matrix models
    14674 > #65,0.65127,0.75885,-0.0017609,-98.418,-0.73511,0.63031,-0.24965,198.33,-0.18834,0.16389,0.96833,8.1389
    14675 
    14676 > ui mousemode right "translate selected models"
    14677 
    14678 > view matrix models
    14679 > #65,0.65127,0.75885,-0.0017609,-99.824,-0.73511,0.63031,-0.24965,198.49,-0.18834,0.16389,0.96833,7.7273
    14680 
    14681 > ui mousemode right "rotate selected models"
    14682 
    14683 > view matrix models
    14684 > #65,0.62871,0.77751,-0.014537,-97.096,-0.75366,0.6046,-0.25778,209.66,-0.19164,0.17303,0.96609,6.7326
    14685 
    14686 > view matrix models
    14687 > #65,0.63333,0.77368,-0.017653,-96.491,-0.74453,0.60292,-0.28664,214.12,-0.21112,0.19468,0.95788,7.2483
    14688 
    14689 > view matrix models
    14690 > #65,0.64973,0.76013,-0.0079853,-98.553,-0.73081,0.62171,-0.28176,206.14,-0.20921,0.18891,0.95945,7.8778
    14691 
    14692 > view matrix models
    14693 > #65,0.72701,0.68626,0.022361,-102.9,-0.66288,0.70999,-0.23771,163.69,-0.179,0.15799,0.97108,6.6946
    14694 
    14695 > ui mousemode right "translate selected models"
    14696 
    14697 > view matrix models
    14698 > #65,0.72701,0.68626,0.022361,-102.24,-0.66288,0.70999,-0.23771,166.13,-0.179,0.15799,0.97108,6.5295
    14699 
    14700 > ui mousemode right "rotate selected models"
    14701 
    14702 > view matrix models
    14703 > #65,0.66483,0.74683,-0.015534,-96.276,-0.72231,0.63742,-0.26824,200.58,-0.19043,0.18955,0.96323,3.1244
    14704 
    14705 > view matrix models
    14706 > #65,0.67851,0.73322,-0.044915,-89.872,-0.71279,0.64234,-0.28166,200.31,-0.17766,0.22312,0.95846,-6.0977
    14707 
    14708 > view matrix models
    14709 > #65,0.68127,0.73076,-0.043174,-90.202,-0.71028,0.6456,-0.28054,198.85,-0.17714,0.22179,0.95887,-5.9786
    14710 
    14711 > ui mousemode right "translate selected models"
    14712 
    14713 > view matrix models
    14714 > #65,0.68127,0.73076,-0.043174,-91.267,-0.71028,0.6456,-0.28054,198.17,-0.17714,0.22179,0.95887,-6.2279
    14715 
    14716 > view matrix models
    14717 > #65,0.68127,0.73076,-0.043174,-91.432,-0.71028,0.6456,-0.28054,198.12,-0.17714,0.22179,0.95887,-6.1027
    14718 
    14719 > view matrix models
    14720 > #65,0.68127,0.73076,-0.043174,-91.427,-0.71028,0.6456,-0.28054,198.15,-0.17714,0.22179,0.95887,-6.0206
    14721 
    14722 > ui mousemode right "rotate selected models"
    14723 
    14724 > view matrix models
    14725 > #65,0.67991,0.73212,-0.041569,-91.798,-0.70946,0.64241,-0.28977,200.59,-0.18544,0.22651,0.95619,-4.9346
    14726 
    14727 > select add #64
    14728 
    14729 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    14730 
    14731 > select subtract #65
    14732 
    14733 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    14734 
    14735 > view matrix models
    14736 > #64,0.69608,0.7106,-0.10252,-79.62,-0.71018,0.66052,-0.24362,264.1,-0.1054,0.24239,0.96444,-29.492
    14737 
    14738 > ui mousemode right "translate selected models"
    14739 
    14740 > view matrix models
    14741 > #64,0.69608,0.7106,-0.10252,-78.66,-0.71018,0.66052,-0.24362,263.94,-0.1054,0.24239,0.96444,-29.123
    14742 
    14743 > view matrix models
    14744 > #64,0.69608,0.7106,-0.10252,-78.689,-0.71018,0.66052,-0.24362,263.92,-0.1054,0.24239,0.96444,-29.123
    14745 
    14746 > ui mousemode right "rotate selected models"
    14747 
    14748 > view matrix models
    14749 > #64,0.68493,0.72832,-0.020524,-97.199,-0.70909,0.65983,-0.24862,264.88,-0.16754,0.18484,0.96838,-4.5834
    14750 
    14751 > view matrix models
    14752 > #64,0.69017,0.72075,-0.064687,-87.532,-0.71179,0.66004,-0.24021,263.66,-0.13044,0.21183,0.96856,-18.061
    14753 
    14754 > color #66 #00f900ff
    14755 
    14756 > select add #66
    14757 
    14758 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    14759 
    14760 > select subtract #66
    14761 
    14762 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    14763 
    14764 > select add #66
    14765 
    14766 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    14767 
    14768 > select subtract #64
    14769 
    14770 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    14771 
    14772 > ui mousemode right "rotate selected models"
    14773 
    14774 > view matrix models
    14775 > #66,0.71162,0.70176,-0.033617,-92.589,-0.68367,0.68066,-0.26323,208.44,-0.16184,0.2103,0.96415,-8.6448
    14776 
    14777 > view matrix models
    14778 > #66,0.71519,0.69581,-0.065988,-85.357,-0.68572,0.68027,-0.25889,208.05,-0.13525,0.2304,0.96365,-18.352
    14779 
    14780 > select add #64
    14781 
    14782 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    14783 
    14784 > select subtract #66
    14785 
    14786 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    14787 
    14788 > view matrix models
    14789 > #64,0.71771,0.6935,-0.062833,-87.05,-0.6792,0.6773,-0.28276,261.96,-0.15354,0.24562,0.95713,-18.966
    14790 
    14791 > select clear
    14792 
    14793 > select add #66
    14794 
    14795 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    14796 
    14797 > ui mousemode right "rotate selected models"
    14798 
    14799 > view matrix models
    14800 > #66,0.70859,0.70522,-0.023773,-94.785,-0.68574,0.68029,-0.25878,208.03,-0.16632,0.19967,0.96564,-5.6356
    14801 
    14802 > view matrix models
    14803 > #66,0.71165,0.70213,-0.023838,-94.663,-0.67806,0.67758,-0.28481,212.43,-0.18382,0.21885,0.95829,-5.1159
    14804 
    14805 > view matrix models
    14806 > #66,0.71132,0.70251,-0.02238,-94.981,-0.68042,0.68027,-0.27251,209.78,-0.17621,0.20907,0.96189,-5.0943
    14807 
    14808 > view matrix models
    14809 > #66,0.70801,0.70574,-0.025664,-94.407,-0.6841,0.67637,-0.27301,211.49,-0.17531,0.21085,0.96167,-5.6328
    14810 
    14811 > view matrix models
    14812 > #66,0.74426,0.66662,-0.041079,-89.408,-0.64997,0.70878,-0.27416,197.63,-0.15365,0.23075,0.96081,-14.255
    14813 
    14814 > view matrix models
    14815 > #66,0.74481,0.6661,-0.039716,-89.67,-0.64723,0.70666,-0.28589,199.95,-0.16236,0.23864,0.95744,-13.676
    14816 
    14817 > view matrix models
    14818 > #66,0.74344,0.66722,-0.045934,-88.4,-0.64967,0.70416,-0.28651,201.13,-0.15882,0.24285,0.95697,-15.239
    14819 
    14820 > view matrix models
    14821 > #66,0.73972,0.6721,-0.033066,-91.4,-0.65145,0.70296,-0.28539,201.53,-0.16856,0.23265,0.95784,-11.172
    14822 
    14823 > view matrix models
    14824 > #66,0.74006,0.67177,-0.032193,-91.567,-0.6496,0.70161,-0.29284,202.98,-0.17413,0.23763,0.95562,-10.774
    14825 
    14826 > view matrix models
    14827 > #66,0.741,0.67081,-0.030418,-91.893,-0.65094,0.70645,-0.27786,199.1,-0.1649,0.2257,0.96014,-10.761
    14828 
    14829 > view matrix models
    14830 > #66,0.7409,0.67092,-0.030636,-91.852,-0.65079,0.70591,-0.27957,199.54,-0.16594,0.22707,0.95964,-10.771
    14831 
    14832 > hide #!64-66 target m
    14833 
    14834 > hide #!57 models
    14835 
    14836 > hide #!1-21 target m
    14837 
    14838 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    14839 > MRCLaboratoryofMolecularBiology/Documents/Carter
    14840 > Lab/Diorge/Membranes/Fit14-13.cxs"
    14841 
    14842 > show #!9 models
    14843 
    14844 > hide #!9 models
    14845 
    14846 > show #!64-66 target m
    14847 
    14848 > show #!13-18 target m
    14849 
    14850 > show #!57 models
    14851 
    14852 > select clear
    14853 
    14854 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    14855 > MRCLaboratoryofMolecularBiology/Documents/Carter
    14856 > Lab/Diorge/Membranes/Fit14-13.cxs"
    14857 
    14858 > show #!8 models
    14859 
    14860 > select add #65
    14861 
    14862 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    14863 
    14864 > ui mousemode right "translate selected models"
    14865 
    14866 > ui mousemode right "rotate selected models"
    14867 
    14868 > view matrix models
    14869 > #65,0.69751,0.71515,-0.045195,-90.617,-0.68891,0.65189,-0.31694,199.91,-0.1972,0.25221,0.94737,-6.7335
    14870 
    14871 > view matrix models
    14872 > #65,0.69389,0.71916,-0.036435,-92.604,-0.69389,0.65427,-0.30075,197.05,-0.19245,0.23397,0.95301,-4.6272
    14873 
    14874 > select clear
    14875 
    14876 > volume #8 level 0.01403
    14877 
    14878 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    14879 > MRCLaboratoryofMolecularBiology/Documents/Carter
    14880 > Lab/Diorge/Membranes/Fit14-13.cxs"
    14881 
    14882 > select add #16
    14883 
    14884 241 atoms, 240 bonds, 15 residues, 1 model selected 
    14885 
    14886 > select subtract #16
    14887 
    14888 Nothing selected 
    14889 
    14890 > select add #15
    14891 
    14892 209 atoms, 208 bonds, 15 residues, 1 model selected 
    14893 
    14894 > select subtract #15
    14895 
    14896 Nothing selected 
    14897 
    14898 > select add #14
    14899 
    14900 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14901 
    14902 > select subtract #14
    14903 
    14904 Nothing selected 
    14905 
    14906 > select add #18
    14907 
    14908 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    14909 
    14910 > select subtract #18
    14911 
    14912 Nothing selected 
    14913 
    14914 > select add #18
    14915 
    14916 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    14917 
    14918 > select subtract #18
    14919 
    14920 Nothing selected 
    14921 
    14922 > select add #17
    14923 
    14924 257 atoms, 259 bonds, 15 residues, 1 model selected 
    14925 
    14926 > ui mousemode right "translate selected models"
    14927 
    14928 > view matrix models
    14929 > #17,0.70804,-0.70132,0.082622,168.16,0.69467,0.71276,0.096989,-76.736,-0.12691,-0.011277,0.99185,28.781
    14930 
    14931 > view matrix models
    14932 > #17,0.70804,-0.70132,0.082622,168.23,0.69467,0.71276,0.096989,-76.405,-0.12691,-0.011277,0.99185,28.729
    14933 
    14934 > view matrix models
    14935 > #17,0.70804,-0.70132,0.082622,167.91,0.69467,0.71276,0.096989,-76.185,-0.12691,-0.011277,0.99185,28.322
    14936 
    14937 > view matrix models
    14938 > #17,0.70804,-0.70132,0.082622,167.27,0.69467,0.71276,0.096989,-76.426,-0.12691,-0.011277,0.99185,28.105
    14939 
    14940 > view matrix models
    14941 > #17,0.70804,-0.70132,0.082622,167.23,0.69467,0.71276,0.096989,-76.466,-0.12691,-0.011277,0.99185,28.35
    14942 
    14943 > view matrix models
    14944 > #17,0.70804,-0.70132,0.082622,166.79,0.69467,0.71276,0.096989,-76.456,-0.12691,-0.011277,0.99185,28.099
    14945 
    14946 > ui mousemode right "rotate selected models"
    14947 
    14948 > view matrix models
    14949 > #17,0.68388,-0.70654,0.18197,151.97,0.70559,0.70393,0.081404,-73.597,-0.18561,0.072728,0.97993,25.274
    14950 
    14951 > ui mousemode right "translate selected models"
    14952 
    14953 > view matrix models
    14954 > #17,0.68388,-0.70654,0.18197,151.99,0.70559,0.70393,0.081404,-73.278,-0.18561,0.072728,0.97993,26.367
    14955 
    14956 > ui mousemode right "rotate selected models"
    14957 
    14958 > view matrix models
    14959 > #17,0.65604,-0.7464,0.11179,178.87,0.74143,0.66505,0.089367,-74.044,-0.14105,0.024253,0.98971,25.467
    14960 
    14961 > ui mousemode right "translate selected models"
    14962 
    14963 > view matrix models
    14964 > #17,0.65604,-0.7464,0.11179,178.99,0.74143,0.66505,0.089367,-74.076,-0.14105,0.024253,0.98971,24.89
    14965 
    14966 > view matrix models
    14967 > #17,0.65604,-0.7464,0.11179,178.98,0.74143,0.66505,0.089367,-74.532,-0.14105,0.024253,0.98971,24.942
    14968 
    14969 > view matrix models
    14970 > #17,0.65604,-0.7464,0.11179,179.02,0.74143,0.66505,0.089367,-74.638,-0.14105,0.024253,0.98971,24.648
    14971 
    14972 > view matrix models
    14973 > #17,0.65604,-0.7464,0.11179,178.97,0.74143,0.66505,0.089367,-74.562,-0.14105,0.024253,0.98971,24.978
    14974 
    14975 > select subtract #17
    14976 
    14977 Nothing selected 
    14978 
    14979 > select add #16
    14980 
    14981 241 atoms, 240 bonds, 15 residues, 1 model selected 
    14982 
    14983 > select subtract #16
    14984 
    14985 Nothing selected 
    14986 
    14987 > select add #15
    14988 
    14989 209 atoms, 208 bonds, 15 residues, 1 model selected 
    14990 
    14991 > select subtract #15
    14992 
    14993 Nothing selected 
    14994 
    14995 > select add #14
    14996 
    14997 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    14998 
    14999 > select subtract #14
    15000 
    15001 Nothing selected 
    15002 
    15003 > select add #14
    15004 
    15005 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    15006 
    15007 > select add #57
    15008 
    15009 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    15010 
    15011 > ui mousemode right "rotate selected models"
    15012 
    15013 > view matrix models
    15014 > #14,0.92186,0.27679,0.27122,-96.012,-0.36411,0.85824,0.36173,7.8327,-0.13265,-0.43222,0.89196,138.86,#57,0.93754,0.3188,0.1392,-82.993,-0.3329,0.93835,0.093116,34.271,-0.10094,-0.13364,0.98588,49.765
    15015 
    15016 > view matrix models
    15017 > #14,0.93771,0.25851,0.23211,-87.662,-0.33091,0.86808,0.37004,-2.3373,-0.10583,-0.4238,0.89955,130.37,#57,0.95134,0.28894,0.10706,-73.006,-0.29921,0.94927,0.096777,24.659,-0.073665,-0.1241,0.98953,41.7
    15018 
    15019 > view matrix models
    15020 > #14,0.91968,0.24302,0.30842,-95.576,-0.35236,0.85739,0.37513,3.138,-0.17327,-0.45368,0.87416,154.78,#57,0.93641,0.29816,0.18503,-87.245,-0.3206,0.9413,0.10569,28.799,-0.14266,-0.15829,0.97703,64.899
    15021 
    15022 > view matrix models
    15023 > #14,0.91681,0.2407,0.31861,-96.493,-0.35884,0.84667,0.39292,3.2451,-0.17518,-0.47456,0.86261,161.83,#57,0.93395,0.29916,0.19554,-89.029,-0.32647,0.93675,0.12614,26.939,-0.14544,-0.18164,0.97255,71.335
    15024 
    15025 > select add #66
    15026 
    15027 3049 atoms, 3041 bonds, 6 pseudobonds, 197 residues, 6 models selected 
    15028 
    15029 > select subtract #57
    15030 
    15031 2852 atoms, 2846 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    15032 
    15033 > ui mousemode right "rotate selected models"
    15034 
    15035 > view matrix models
    15036 > #14,0.90834,0.21562,0.35836,-97.688,-0.35397,0.85272,0.38415,2.7982,-0.22275,-0.47579,0.85088,174.05,#66,0.73382,0.67916,0.015876,-101.79,-0.64656,0.70539,-0.29048,201.04,-0.20848,0.20289,0.95675,3.6741
    15037 
    15038 > view matrix models
    15039 > #14,0.89052,0.25646,0.37577,-105.67,-0.39537,0.84489,0.36034,17.483,-0.22507,-0.46946,0.85379,172.68,#66,0.7022,0.71198,0.001349,-100.18,-0.67938,0.6706,-0.29789,216.94,-0.213,0.20826,0.9546,3.7646
    15040 
    15041 > ui mousemode right "translate selected models"
    15042 
    15043 > view matrix models
    15044 > #14,0.89052,0.25646,0.37577,-108.87,-0.39537,0.84489,0.36034,17.767,-0.22507,-0.46946,0.85379,172.19,#66,0.7022,0.71198,0.001349,-103.37,-0.67938,0.6706,-0.29789,217.22,-0.213,0.20826,0.9546,3.2724
    15045 
    15046 > ui mousemode right "rotate selected models"
    15047 
    15048 > view matrix models
    15049 > #14,0.87052,0.2974,0.39212,-116.22,-0.43631,0.83497,0.33535,33.009,-0.22767,-0.46301,0.85661,170.87,#66,0.66866,0.74344,-0.013796,-100.95,-0.71095,0.63379,-0.30473,233.22,-0.2178,0.21357,0.95234,3.454
    15050 
    15051 > hide #!8 models
    15052 
    15053 > select add #13
    15054 
    15055 2948 atoms, 2941 bonds, 6 pseudobonds, 192 residues, 6 models selected 
    15056 
    15057 > select subtract #13
    15058 
    15059 2852 atoms, 2846 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    15060 
    15061 > select subtract #14
    15062 
    15063 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    15064 
    15065 > select add #15
    15066 
    15067 2800 atoms, 2794 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    15068 
    15069 > select add #16
    15070 
    15071 3041 atoms, 3034 bonds, 4 pseudobonds, 197 residues, 4 models selected 
    15072 
    15073 > ui mousemode right "rotate selected models"
    15074 
    15075 > view matrix models
    15076 > #15,0.94186,-0.12927,-0.31014,100.37,0.09066,0.98657,-0.13589,36.411,0.32354,0.099876,0.94093,-71.321,#16,0.90175,0.093114,-0.42211,84.91,-0.11422,0.99314,-0.024926,51.081,0.41689,0.07069,0.9062,-76.368,#66,0.6573,0.7534,-0.018641,-100.21,-0.72798,0.62834,-0.2743,231.63,-0.19494,0.19387,0.96146,1.9974
    15077 
    15078 > undo
    15079 
    15080 > select subtract #66
    15081 
    15082 450 atoms, 448 bonds, 30 residues, 2 models selected 
    15083 
    15084 > view matrix models
    15085 > #15,0.9419,-0.09525,-0.32211,95.03,0.061586,0.99167,-0.11316,36.634,0.33021,0.086744,0.93991,-68.379,#16,0.89387,0.12745,-0.42983,80.14,-0.14058,0.99007,0.00123,51.773,0.42572,0.059324,0.90291,-73.732
    15086 
    15087 > ui mousemode right "translate selected models"
    15088 
    15089 > view matrix models
    15090 > #15,0.9419,-0.09525,-0.32211,95.767,0.061586,0.99167,-0.11316,36.288,0.33021,0.086744,0.93991,-69.238,#16,0.89387,0.12745,-0.42983,80.877,-0.14058,0.99007,0.00123,51.427,0.42572,0.059324,0.90291,-74.591
    15091 
    15092 > show #!8 models
    15093 
    15094 > select subtract #15
    15095 
    15096 241 atoms, 240 bonds, 15 residues, 1 model selected 
    15097 
    15098 > select subtract #16
    15099 
    15100 Nothing selected 
    15101 
    15102 > select add #57
    15103 
    15104 197 atoms, 195 bonds, 1 pseudobond, 13 residues, 2 models selected 
    15105 
    15106 > select subtract #57
    15107 
    15108 Nothing selected 
    15109 
    15110 > select add #14
    15111 
    15112 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    15113 
    15114 > ui mousemode right "rotate selected models"
    15115 
    15116 > view matrix models
    15117 > #14,0.80806,0.40301,0.42968,-133.08,-0.54675,0.78462,0.29229,73.016,-0.21934,-0.47111,0.85437,171.35
    15118 
    15119 > ui mousemode right "translate selected models"
    15120 
    15121 > view matrix models
    15122 > #14,0.80806,0.40301,0.42968,-130.93,-0.54675,0.78462,0.29229,72.08,-0.21934,-0.47111,0.85437,171.19
    15123 
    15124 > view matrix models
    15125 > #14,0.80806,0.40301,0.42968,-131.25,-0.54675,0.78462,0.29229,72.436,-0.21934,-0.47111,0.85437,171.51
    15126 
    15127 > view matrix models
    15128 > #14,0.80806,0.40301,0.42968,-131.09,-0.54675,0.78462,0.29229,72.451,-0.21934,-0.47111,0.85437,171.02
    15129 
    15130 > view matrix models
    15131 > #14,0.80806,0.40301,0.42968,-131.67,-0.54675,0.78462,0.29229,72.718,-0.21934,-0.47111,0.85437,170.52
    15132 
    15133 > view matrix models
    15134 > #14,0.80806,0.40301,0.42968,-131.87,-0.54675,0.78462,0.29229,72.615,-0.21934,-0.47111,0.85437,170.65
    15135 
    15136 > select add #57
    15137 
    15138 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    15139 
    15140 > ui mousemode right "translate selected models"
    15141 
    15142 > view matrix models
    15143 > #14,0.80806,0.40301,0.42968,-129.83,-0.54675,0.78462,0.29229,71.621,-0.21934,-0.47111,0.85437,170.37,#57,0.93395,0.29916,0.19554,-86.984,-0.32647,0.93675,0.12614,25.945,-0.14544,-0.18164,0.97255,71.049
    15144 
    15145 > view matrix models
    15146 > #14,0.80806,0.40301,0.42968,-129.05,-0.54675,0.78462,0.29229,71.696,-0.21934,-0.47111,0.85437,171.02,#57,0.93395,0.29916,0.19554,-86.209,-0.32647,0.93675,0.12614,26.02,-0.14544,-0.18164,0.97255,71.703
    15147 
    15148 > select clear
    15149 
    15150 > combine #13-18,57
    15151 
    15152 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    15153 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    15154 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    15155 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    15156 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    15157 to 'q' 
    15158 
    15159 > combine #13-18,57
    15160 
    15161 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    15162 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    15163 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    15164 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    15165 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    15166 to 'q' 
    15167 
    15168 > combine #13-18,57
    15169 
    15170 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    15171 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    15172 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    15173 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    15174 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    15175 to 'q' 
    15176 
    15177 > mmaker #67/9 to #64/9 pairing ss
    15178 
    15179 Parameters 
    15180 --- 
    15181 Chain pairing | ss 
    15182 Alignment algorithm | Needleman-Wunsch 
    15183 Similarity matrix | BLOSUM-62 
    15184 SS fraction | 0.3 
    15185 Gap open (HH/SS/other) | 18/18/6 
    15186 Gap extend | 1 
    15187 SS matrix |  |  | H | S | O 
    15188 ---|---|---|--- 
    15189 H | 6 | -9 | -6 
    15190 S |  | 6 | -6 
    15191 O |  |  | 4 
    15192 Iteration cutoff | 2 
    15193  
    15194 Matchmaker combination, chain 9 (#64) with combination, chain 9 (#67),
    15195 sequence alignment score = 674.3 
    15196 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    15197 0.000) 
    15198  
    15199 
    15200 > mmaker #68/9 to #65/9 pairing ss
    15201 
    15202 Parameters 
    15203 --- 
    15204 Chain pairing | ss 
    15205 Alignment algorithm | Needleman-Wunsch 
    15206 Similarity matrix | BLOSUM-62 
    15207 SS fraction | 0.3 
    15208 Gap open (HH/SS/other) | 18/18/6 
    15209 Gap extend | 1 
    15210 SS matrix |  |  | H | S | O 
    15211 ---|---|---|--- 
    15212 H | 6 | -9 | -6 
    15213 S |  | 6 | -6 
    15214 O |  |  | 4 
    15215 Iteration cutoff | 2 
    15216  
    15217 Matchmaker combination, chain 9 (#65) with combination, chain 9 (#68),
    15218 sequence alignment score = 674.3 
    15219 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    15220 0.000) 
    15221  
    15222 
    15223 > mmaker #69/9 to #66/9 pairing ss
    15224 
    15225 Parameters 
    15226 --- 
    15227 Chain pairing | ss 
    15228 Alignment algorithm | Needleman-Wunsch 
    15229 Similarity matrix | BLOSUM-62 
    15230 SS fraction | 0.3 
    15231 Gap open (HH/SS/other) | 18/18/6 
    15232 Gap extend | 1 
    15233 SS matrix |  |  | H | S | O 
    15234 ---|---|---|--- 
    15235 H | 6 | -9 | -6 
    15236 S |  | 6 | -6 
    15237 O |  |  | 4 
    15238 Iteration cutoff | 2 
    15239  
    15240 Matchmaker combination, chain 9 (#66) with combination, chain 9 (#69),
    15241 sequence alignment score = 674.3 
    15242 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    15243 0.000) 
    15244  
    15245 
    15246 > color #68 #73fa79ff
    15247 
    15248 > color #67 #fffc79ff
    15249 
    15250 > color #69 #ff8ad8ff
    15251 
    15252 > hide #!64 models
    15253 
    15254 > hide #!65 models
    15255 
    15256 > hide #!66 models
    15257 
    15258 > select add #67
    15259 
    15260 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    15261 
    15262 > ui mousemode right "rotate selected models"
    15263 
    15264 > view matrix models
    15265 > #67,0.74837,0.66121,-0.052283,-87.793,-0.64684,0.71012,-0.27809,247.12,-0.14675,0.24193,0.95913,-19.858
    15266 
    15267 > ui mousemode right "translate selected models"
    15268 
    15269 > view matrix models
    15270 > #67,0.74837,0.66121,-0.052283,-87.517,-0.64684,0.71012,-0.27809,244.09,-0.14675,0.24193,0.95913,-19.969
    15271 
    15272 > ui mousemode right "rotate selected models"
    15273 
    15274 > view matrix models
    15275 > #67,0.76087,0.64651,-0.055712,-85.903,-0.62617,0.70896,-0.32449,249.67,-0.17029,0.28178,0.94425,-21.485
    15276 
    15277 > view matrix models
    15278 > #67,0.75283,0.65626,-0.05069,-87.577,-0.637,0.70699,-0.30724,248.77,-0.16579,0.26359,0.95028,-19.411
    15279 
    15280 > view matrix models
    15281 > #67,0.72135,0.68972,-0.062788,-86.629,-0.67737,0.68371,-0.2715,254.82,-0.14433,0.23837,0.96039,-19.882
    15282 
    15283 > view matrix models
    15284 > #67,0.72615,0.68321,-0.077001,-83.206,-0.67539,0.68787,-0.26586,252.34,-0.12867,0.24506,0.96093,-24.603
    15285 
    15286 > select add #68
    15287 
    15288 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    15289 
    15290 > select subtract #67
    15291 
    15292 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    15293 
    15294 > ui mousemode right "translate selected models"
    15295 
    15296 > view matrix models
    15297 > #68,0.69389,0.71916,-0.036435,-97.998,-0.69389,0.65427,-0.30075,199.83,-0.19245,0.23397,0.95301,-5.1577
    15298 
    15299 > view matrix models
    15300 > #68,0.69389,0.71916,-0.036435,-97.902,-0.69389,0.65427,-0.30075,199.7,-0.19245,0.23397,0.95301,-5.5624
    15301 
    15302 > ui mousemode right "rotate selected models"
    15303 
    15304 > view matrix models
    15305 > #68,0.65821,0.75283,-0.0032772,-105.32,-0.73838,0.64471,-0.19788,189.85,-0.14685,0.13266,0.98022,3.2424
    15306 
    15307 > ui mousemode right "translate selected models"
    15308 
    15309 > view matrix models
    15310 > #68,0.65821,0.75283,-0.0032772,-105.5,-0.73838,0.64471,-0.19788,189.89,-0.14685,0.13266,0.98022,3.2392
    15311 
    15312 > ui mousemode right "rotate selected models"
    15313 
    15314 > view matrix models
    15315 > #68,0.65834,0.75272,-0.00056889,-106.05,-0.73881,0.64603,-0.19184,188.45,-0.14404,0.12672,0.98143,3.8076
    15316 
    15317 > ui mousemode right "translate selected models"
    15318 
    15319 > view matrix models
    15320 > #68,0.65834,0.75272,-0.00056889,-105.4,-0.73881,0.64603,-0.19184,187.25,-0.14404,0.12672,0.98143,3.6605
    15321 
    15322 > ui mousemode right "rotate selected models"
    15323 
    15324 > view matrix models
    15325 > #68,0.5937,0.80447,-0.018505,-100.96,-0.79416,0.58206,-0.17469,209.34,-0.12977,0.11841,0.98445,2.1527
    15326 
    15327 > ui mousemode right "translate selected models"
    15328 
    15329 > view matrix models
    15330 > #68,0.5937,0.80447,-0.018505,-103.27,-0.79416,0.58206,-0.17469,210.38,-0.12977,0.11841,0.98445,2.5761
    15331 
    15332 > view matrix models
    15333 > #68,0.5937,0.80447,-0.018505,-100.86,-0.79416,0.58206,-0.17469,211.15,-0.12977,0.11841,0.98445,2.3055
    15334 
    15335 > view matrix models
    15336 > #68,0.5937,0.80447,-0.018505,-100.84,-0.79416,0.58206,-0.17469,211.32,-0.12977,0.11841,0.98445,2.5512
    15337 
    15338 > view matrix models
    15339 > #68,0.5937,0.80447,-0.018505,-100.95,-0.79416,0.58206,-0.17469,210.36,-0.12977,0.11841,0.98445,0.15105
    15340 
    15341 > ui mousemode right "rotate selected models"
    15342 
    15343 > view matrix models
    15344 > #68,0.59056,0.80121,-0.096483,-83.826,-0.77944,0.53533,-0.32541,248.67,-0.20907,0.26738,0.94064,-9.6201
    15345 
    15346 > ui mousemode right "translate selected models"
    15347 
    15348 > view matrix models
    15349 > #68,0.59056,0.80121,-0.096483,-86.695,-0.77944,0.53533,-0.32541,248.26,-0.20907,0.26738,0.94064,-9.8718
    15350 
    15351 > ui mousemode right "rotate selected models"
    15352 
    15353 > view matrix models
    15354 > #68,0.559,0.82892,-0.020333,-102.25,-0.79646,0.52997,-0.29116,245.92,-0.23057,0.17895,0.95646,11.462
    15355 
    15356 > view matrix models
    15357 > #68,0.6127,0.79023,0.011432,-110.34,-0.75544,0.58984,-0.28531,222.92,-0.2322,0.16617,0.95837,14.332
    15358 
    15359 > ui mousemode right "translate selected models"
    15360 
    15361 > view matrix models
    15362 > #68,0.6127,0.79023,0.011432,-108.42,-0.75544,0.58984,-0.28531,224.18,-0.2322,0.16617,0.95837,14.305
    15363 
    15364 > view matrix models
    15365 > #68,0.6127,0.79023,0.011432,-108.71,-0.75544,0.58984,-0.28531,220.84,-0.2322,0.16617,0.95837,14.061
    15366 
    15367 > view matrix models
    15368 > #68,0.6127,0.79023,0.011432,-107.13,-0.75544,0.58984,-0.28531,221.24,-0.2322,0.16617,0.95837,14.782
    15369 
    15370 > view matrix models
    15371 > #68,0.6127,0.79023,0.011432,-106.52,-0.75544,0.58984,-0.28531,221.81,-0.2322,0.16617,0.95837,15.438
    15372 
    15373 > ui mousemode right "rotate selected models"
    15374 
    15375 > view matrix models
    15376 > #68,0.61876,0.78544,0.014546,-107.24,-0.74213,0.59051,-0.31707,225.46,-0.25763,0.18539,0.94829,18.056
    15377 
    15378 > view matrix models
    15379 > #68,0.61524,0.78825,-0.011454,-101.94,-0.75669,0.58641,-0.28904,223.6,-0.22112,0.1865,0.95725,8.8184
    15380 
    15381 > view matrix models
    15382 > #68,0.6196,0.78483,-0.011589,-101.98,-0.75,0.58762,-0.30367,224.96,-0.23152,0.19684,0.95271,9.4032
    15383 
    15384 > ui mousemode right "translate selected models"
    15385 
    15386 > view matrix models
    15387 > #68,0.6196,0.78483,-0.011589,-100.38,-0.75,0.58762,-0.30367,223.86,-0.23152,0.19684,0.95271,9.7836
    15388 
    15389 > select add #69
    15390 
    15391 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    15392 
    15393 > select subtract #68
    15394 
    15395 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    15396 
    15397 > view matrix models
    15398 > #69,0.66866,0.74344,-0.013796,-102.1,-0.71095,0.63379,-0.30473,233.63,-0.2178,0.21357,0.95234,3.2339
    15399 
    15400 > view matrix models
    15401 > #69,0.66866,0.74344,-0.013796,-100.87,-0.71095,0.63379,-0.30473,233.98,-0.2178,0.21357,0.95234,4.0443
    15402 
    15403 > view matrix models
    15404 > #69,0.66866,0.74344,-0.013796,-101.26,-0.71095,0.63379,-0.30473,233.43,-0.2178,0.21357,0.95234,4.2404
    15405 
    15406 > view matrix models
    15407 > #69,0.66866,0.74344,-0.013796,-101.13,-0.71095,0.63379,-0.30473,233.27,-0.2178,0.21357,0.95234,3.3945
    15408 
    15409 > view matrix models
    15410 > #69,0.66866,0.74344,-0.013796,-101.18,-0.71095,0.63379,-0.30473,233.28,-0.2178,0.21357,0.95234,3.385
    15411 
    15412 > ui mousemode right "rotate selected models"
    15413 
    15414 > select add #68
    15415 
    15416 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    15417 
    15418 > select subtract #69
    15419 
    15420 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    15421 
    15422 > view matrix models
    15423 > #68,0.60652,0.79497,-0.012182,-100.02,-0.76707,0.58107,-0.27195,222.31,-0.20912,0.17429,0.96223,8.6359
    15424 
    15425 > ui mousemode right "translate selected models"
    15426 
    15427 > view matrix models
    15428 > #68,0.60652,0.79497,-0.012182,-100.33,-0.76707,0.58107,-0.27195,223.64,-0.20912,0.17429,0.96223,9.613
    15429 
    15430 > view matrix models
    15431 > #68,0.60652,0.79497,-0.012182,-101.27,-0.76707,0.58107,-0.27195,223.52,-0.20912,0.17429,0.96223,9.7016
    15432 
    15433 > view matrix models
    15434 > #68,0.60652,0.79497,-0.012182,-101.22,-0.76707,0.58107,-0.27195,223.81,-0.20912,0.17429,0.96223,9.6805
    15435 
    15436 > select add #69
    15437 
    15438 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    15439 
    15440 > view matrix models
    15441 > #68,0.60652,0.79497,-0.012182,-101.43,-0.76707,0.58107,-0.27195,224.95,-0.20912,0.17429,0.96223,9.695,#69,0.66866,0.74344,-0.013796,-101.39,-0.71095,0.63379,-0.30473,234.41,-0.2178,0.21357,0.95234,3.3994
    15442 
    15443 > view matrix models
    15444 > #68,0.60652,0.79497,-0.012182,-101.32,-0.76707,0.58107,-0.27195,224.95,-0.20912,0.17429,0.96223,9.0128,#69,0.66866,0.74344,-0.013796,-101.28,-0.71095,0.63379,-0.30473,234.42,-0.2178,0.21357,0.95234,2.7172
    15445 
    15446 > view matrix models
    15447 > #68,0.60652,0.79497,-0.012182,-101.31,-0.76707,0.58107,-0.27195,226.01,-0.20912,0.17429,0.96223,8.9544,#69,0.66866,0.74344,-0.013796,-101.27,-0.71095,0.63379,-0.30473,235.48,-0.2178,0.21357,0.95234,2.6588
    15448 
    15449 > ui mousemode right "rotate selected models"
    15450 
    15451 > view matrix models
    15452 > #68,0.57965,0.81451,-0.023904,-98.615,-0.78469,0.55004,-0.28586,239.42,-0.21969,0.18446,0.95797,9.3585,#69,0.64375,0.76478,-0.026647,-98.228,-0.73067,0.60394,-0.31841,248.97,-0.22742,0.22444,0.94758,3.2074
    15453 
    15454 > view matrix models
    15455 > #68,0.59821,0.80045,-0.03773,-96.005,-0.76514,0.55657,-0.32372,241.71,-0.23812,0.22252,0.9454,6.2486,#69,0.66145,0.74894,-0.039668,-95.671,-0.70974,0.60797,-0.35587,251.5,-0.24241,0.26354,0.93369,0.48394
    15456 
    15457 > undo
    15458 
    15459 > view matrix models
    15460 > #68,0.57532,0.81784,-0.012108,-100.93,-0.7871,0.54954,-0.28014,238.85,-0.22245,0.1707,0.95988,12.766,#69,0.63941,0.76872,-0.015044,-100.6,-0.73324,0.60378,-0.31274,248.37,-0.23132,0.211,0.94972,6.554
    15461 
    15462 > select subtract #69
    15463 
    15464 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    15465 
    15466 > view matrix models
    15467 > #68,0.62746,0.7786,0.0081972,-106.27,-0.74992,0.60711,-0.26276,214.81,-0.20956,0.15872,0.96483,11.983
    15468 
    15469 > ui mousemode right "translate selected models"
    15470 
    15471 > view matrix models
    15472 > #68,0.62746,0.7786,0.0081972,-103.16,-0.74992,0.60711,-0.26276,212.51,-0.20956,0.15872,0.96483,12.87
    15473 
    15474 > ui mousemode right "rotate selected models"
    15475 
    15476 > view matrix models
    15477 > #68,0.6854,0.72775,0.024805,-106.23,-0.69827,0.66653,-0.26107,188.37,-0.20653,0.16162,0.965,11.574
    15478 
    15479 > ui mousemode right "translate selected models"
    15480 
    15481 > view matrix models
    15482 > #68,0.6854,0.72775,0.024805,-109.15,-0.69827,0.66653,-0.26107,189.24,-0.20653,0.16162,0.965,11.605
    15483 
    15484 > view matrix models
    15485 > #68,0.6854,0.72775,0.024805,-108.46,-0.69827,0.66653,-0.26107,188.22,-0.20653,0.16162,0.965,11.555
    15486 
    15487 > view matrix models
    15488 > #68,0.6854,0.72775,0.024805,-106.95,-0.69827,0.66653,-0.26107,186.9,-0.20653,0.16162,0.965,11.867
    15489 
    15490 > ui mousemode right "rotate selected models"
    15491 
    15492 > view matrix models
    15493 > #68,0.67946,0.73339,0.021658,-106.44,-0.70379,0.65981,-0.26332,189.99,-0.20741,0.16368,0.96446,11.676
    15494 
    15495 > view matrix models
    15496 > #68,0.68413,0.72929,-0.010052,-100.01,-0.70752,0.66023,-0.25201,188.34,-0.17715,0.17952,0.96767,1.4435
    15497 
    15498 > ui mousemode right "translate selected models"
    15499 
    15500 > view matrix models
    15501 > #68,0.68413,0.72929,-0.010052,-98.057,-0.70752,0.66023,-0.25201,189.57,-0.17715,0.17952,0.96767,1.3439
    15502 
    15503 > ui mousemode right "rotate selected models"
    15504 
    15505 > view matrix models
    15506 > #68,0.64499,0.76292,-0.044085,-91.211,-0.74484,0.61471,-0.2595,208.87,-0.17088,0.20021,0.96474,-4.0471
    15507 
    15508 > ui mousemode right "translate selected models"
    15509 
    15510 > view matrix models
    15511 > #68,0.64499,0.76292,-0.044085,-92.977,-0.74484,0.61471,-0.2595,208.23,-0.17088,0.20021,0.96474,-4.1161
    15512 
    15513 > view matrix models
    15514 > #68,0.64499,0.76292,-0.044085,-95.761,-0.74484,0.61471,-0.2595,209.68,-0.17088,0.20021,0.96474,-4.7238
    15515 
    15516 > view matrix models
    15517 > #68,0.64499,0.76292,-0.044085,-93.521,-0.74484,0.61471,-0.2595,208.57,-0.17088,0.20021,0.96474,-4.4662
    15518 
    15519 > ui mousemode right "rotate selected models"
    15520 
    15521 > view matrix models
    15522 > #68,0.57274,0.8156,-0.082229,-83.713,-0.79889,0.53288,-0.27896,241.91,-0.1837,0.22546,0.95678,-6.1369
    15523 
    15524 > ui mousemode right "translate selected models"
    15525 
    15526 > view matrix models
    15527 > #68,0.57274,0.8156,-0.082229,-87.166,-0.79889,0.53288,-0.27896,246.2,-0.1837,0.22546,0.95678,-7.6509
    15528 
    15529 > view matrix models
    15530 > #68,0.57274,0.8156,-0.082229,-88.478,-0.79889,0.53288,-0.27896,247.9,-0.1837,0.22546,0.95678,-8.2388
    15531 
    15532 > ui mousemode right "rotate selected models"
    15533 
    15534 > view matrix models
    15535 > #68,0.65951,0.72564,-0.19621,-61.834,-0.72473,0.54452,-0.42221,259.61,-0.19953,0.42065,0.88501,-35.448
    15536 
    15537 > ui mousemode right "translate selected models"
    15538 
    15539 > view matrix models
    15540 > #68,0.65951,0.72564,-0.19621,-59.447,-0.72473,0.54452,-0.42221,256.89,-0.19953,0.42065,0.88501,-34.587
    15541 
    15542 > select add #69
    15543 
    15544 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    15545 
    15546 > view matrix models
    15547 > #68,0.65951,0.72564,-0.19621,-60.593,-0.72473,0.54452,-0.42221,256.16,-0.19953,0.42065,0.88501,-34.909,#69,0.63941,0.76872,-0.015044,-101.75,-0.73324,0.60378,-0.31274,247.64,-0.23132,0.211,0.94972,6.2312
    15548 
    15549 > undo
    15550 
    15551 [Repeated 9 time(s)]
    15552 
    15553 > redo
    15554 
    15555 > hide #!67-69 target m
    15556 
    15557 > hide #!57 models
    15558 
    15559 > hide #!9-19 target m
    15560 
    15561 > hide #!8 models
    15562 
    15563 > show #!9 models
    15564 
    15565 > hide #!9 models
    15566 
    15567 > show #!8 models
    15568 
    15569 > show #!18 models
    15570 
    15571 > show #!17 models
    15572 
    15573 > show #!16 models
    15574 
    15575 > show #!15 models
    15576 
    15577 > show #!14 models
    15578 
    15579 > show #!13 models
    15580 
    15581 > hide #!8 models
    15582 
    15583 > show #!9 models
    15584 
    15585 > hide #!9 models
    15586 
    15587 > show #!8 models
    15588 
    15589 > hide #!13 models
    15590 
    15591 > show #!13 models
    15592 
    15593 > hide #!14 models
    15594 
    15595 > show #!14 models
    15596 
    15597 > hide #!15 models
    15598 
    15599 > show #!15 models
    15600 
    15601 > hide #!16 models
    15602 
    15603 > show #!16 models
    15604 
    15605 > select add #15
    15606 
    15607 2800 atoms, 2794 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    15608 
    15609 > select add #16
    15610 
    15611 3041 atoms, 3034 bonds, 4 pseudobonds, 197 residues, 4 models selected 
    15612 
    15613 > select add #17
    15614 
    15615 3298 atoms, 3293 bonds, 4 pseudobonds, 212 residues, 5 models selected 
    15616 
    15617 > select subtract #17
    15618 
    15619 3041 atoms, 3034 bonds, 4 pseudobonds, 197 residues, 4 models selected 
    15620 
    15621 > select add #17
    15622 
    15623 3298 atoms, 3293 bonds, 4 pseudobonds, 212 residues, 5 models selected 
    15624 
    15625 > select add #18
    15626 
    15627 4628 atoms, 4622 bonds, 5 pseudobonds, 296 residues, 7 models selected 
    15628 
    15629 > ui mousemode right "rotate selected models"
    15630 
    15631 > view matrix models
    15632 > #15,0.94141,-0.074496,-0.32893,93.362,0.041359,0.99344,-0.10662,38.754,0.33471,0.086772,0.93832,-69.838,#17,0.67237,-0.73216,0.10895,173.73,0.72732,0.68081,0.086583,-73.881,-0.13756,0.021025,0.99027,24.719,#18,0.98014,-0.19508,-0.035582,47.621,0.19499,0.98079,-0.0058233,-9.2874,0.036034,-0.0012307,0.99935,-6.2376,#16,0.88863,0.14825,-0.434,78.824,-0.15977,0.9871,0.010049,54.21,0.4299,0.060411,0.90086,-75.255,#68,0.62977,0.77489,-0.054207,-91.981,-0.75836,0.59822,-0.25888,214.66,-0.16817,0.20414,0.96439,-5.5314
    15633 
    15634 > ui mousemode right "translate selected models"
    15635 
    15636 > view matrix models
    15637 > #15,0.94141,-0.074496,-0.32893,93.612,0.041359,0.99344,-0.10662,39.469,0.33471,0.086772,0.93832,-69.992,#17,0.67237,-0.73216,0.10895,173.98,0.72732,0.68081,0.086583,-73.167,-0.13756,0.021025,0.99027,24.565,#18,0.98014,-0.19508,-0.035582,47.871,0.19499,0.98079,-0.0058233,-8.5733,0.036034,-0.0012307,0.99935,-6.392,#16,0.88863,0.14825,-0.434,79.073,-0.15977,0.9871,0.010049,54.924,0.4299,0.060411,0.90086,-75.409,#68,0.62977,0.77489,-0.054207,-91.732,-0.75836,0.59822,-0.25888,215.37,-0.16817,0.20414,0.96439,-5.6858
    15638 
    15639 > view matrix models
    15640 > #15,0.94141,-0.074496,-0.32893,93.158,0.041359,0.99344,-0.10662,39.735,0.33471,0.086772,0.93832,-69.948,#17,0.67237,-0.73216,0.10895,173.52,0.72732,0.68081,0.086583,-72.901,-0.13756,0.021025,0.99027,24.609,#18,0.98014,-0.19508,-0.035582,47.417,0.19499,0.98079,-0.0058233,-8.3071,0.036034,-0.0012307,0.99935,-6.3477,#16,0.88863,0.14825,-0.434,78.619,-0.15977,0.9871,0.010049,55.19,0.4299,0.060411,0.90086,-75.365,#68,0.62977,0.77489,-0.054207,-92.186,-0.75836,0.59822,-0.25888,215.64,-0.16817,0.20414,0.96439,-5.6416
    15641 
    15642 > view matrix models
    15643 > #15,0.94141,-0.074496,-0.32893,93.165,0.041359,0.99344,-0.10662,39.48,0.33471,0.086772,0.93832,-69.893,#17,0.67237,-0.73216,0.10895,173.53,0.72732,0.68081,0.086583,-73.156,-0.13756,0.021025,0.99027,24.664,#18,0.98014,-0.19508,-0.035582,47.424,0.19499,0.98079,-0.0058233,-8.5617,0.036034,-0.0012307,0.99935,-6.2929,#16,0.88863,0.14825,-0.434,78.627,-0.15977,0.9871,0.010049,54.936,0.4299,0.060411,0.90086,-75.31,#68,0.62977,0.77489,-0.054207,-92.178,-0.75836,0.59822,-0.25888,215.38,-0.16817,0.20414,0.96439,-5.5868
    15644 
    15645 > view matrix models
    15646 > #15,0.94141,-0.074496,-0.32893,93.458,0.041359,0.99344,-0.10662,40.06,0.33471,0.086772,0.93832,-69.973,#17,0.67237,-0.73216,0.10895,173.83,0.72732,0.68081,0.086583,-72.575,-0.13756,0.021025,0.99027,24.584,#18,0.98014,-0.19508,-0.035582,47.718,0.19499,0.98079,-0.0058233,-7.9816,0.036034,-0.0012307,0.99935,-6.3725,#16,0.88863,0.14825,-0.434,78.92,-0.15977,0.9871,0.010049,55.516,0.4299,0.060411,0.90086,-75.39,#68,0.62977,0.77489,-0.054207,-91.885,-0.75836,0.59822,-0.25888,215.96,-0.16817,0.20414,0.96439,-5.6664
    15647 
    15648 > view matrix models
    15649 > #15,0.94141,-0.074496,-0.32893,93.304,0.041359,0.99344,-0.10662,39.944,0.33471,0.086772,0.93832,-69.865,#17,0.67237,-0.73216,0.10895,173.67,0.72732,0.68081,0.086583,-72.692,-0.13756,0.021025,0.99027,24.692,#18,0.98014,-0.19508,-0.035582,47.564,0.19499,0.98079,-0.0058233,-8.098,0.036034,-0.0012307,0.99935,-6.2647,#16,0.88863,0.14825,-0.434,78.766,-0.15977,0.9871,0.010049,55.4,0.4299,0.060411,0.90086,-75.282,#68,0.62977,0.77489,-0.054207,-92.039,-0.75836,0.59822,-0.25888,215.85,-0.16817,0.20414,0.96439,-5.5585
    15650 
    15651 > view matrix models
    15652 > #15,0.94141,-0.074496,-0.32893,93.299,0.041359,0.99344,-0.10662,39.948,0.33471,0.086772,0.93832,-69.842,#17,0.67237,-0.73216,0.10895,173.67,0.72732,0.68081,0.086583,-72.688,-0.13756,0.021025,0.99027,24.714,#18,0.98014,-0.19508,-0.035582,47.558,0.19499,0.98079,-0.0058233,-8.094,0.036034,-0.0012307,0.99935,-6.2421,#16,0.88863,0.14825,-0.434,78.761,-0.15977,0.9871,0.010049,55.404,0.4299,0.060411,0.90086,-75.259,#68,0.62977,0.77489,-0.054207,-92.044,-0.75836,0.59822,-0.25888,215.85,-0.16817,0.20414,0.96439,-5.536
    15653 
    15654 > view matrix models
    15655 > #15,0.94141,-0.074496,-0.32893,93.274,0.041359,0.99344,-0.10662,39.881,0.33471,0.086772,0.93832,-69.845,#17,0.67237,-0.73216,0.10895,173.64,0.72732,0.68081,0.086583,-72.755,-0.13756,0.021025,0.99027,24.711,#18,0.98014,-0.19508,-0.035582,47.533,0.19499,0.98079,-0.0058233,-8.161,0.036034,-0.0012307,0.99935,-6.2453,#16,0.88863,0.14825,-0.434,78.735,-0.15977,0.9871,0.010049,55.337,0.4299,0.060411,0.90086,-75.263,#68,0.62977,0.77489,-0.054207,-92.07,-0.75836,0.59822,-0.25888,215.78,-0.16817,0.20414,0.96439,-5.5392
    15656 
    15657 > show #!57 models
    15658 
    15659 > select clear
    15660 
    15661 > combine #13-18,57
    15662 
    15663 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    15664 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    15665 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    15666 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    15667 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    15668 to 'q' 
    15669 
    15670 > combine #13-18,57
    15671 
    15672 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    15673 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    15674 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    15675 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    15676 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    15677 to 'q' 
    15678 
    15679 > combine #13-18,57
    15680 
    15681 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    15682 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    15683 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    15684 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    15685 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    15686 to 'q' 
    15687 
    15688 > mmaker #71/9 to #67/9 pairing ss
    15689 
    15690 Parameters 
    15691 --- 
    15692 Chain pairing | ss 
    15693 Alignment algorithm | Needleman-Wunsch 
    15694 Similarity matrix | BLOSUM-62 
    15695 SS fraction | 0.3 
    15696 Gap open (HH/SS/other) | 18/18/6 
    15697 Gap extend | 1 
    15698 SS matrix |  |  | H | S | O 
    15699 ---|---|---|--- 
    15700 H | 6 | -9 | -6 
    15701 S |  | 6 | -6 
    15702 O |  |  | 4 
    15703 Iteration cutoff | 2 
    15704  
    15705 Matchmaker combination, chain 9 (#67) with combination, chain 9 (#71),
    15706 sequence alignment score = 674.3 
    15707 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    15708 0.000) 
    15709  
    15710 
    15711 > mmaker #72/9 to #68/9 pairing ss
    15712 
    15713 Parameters 
    15714 --- 
    15715 Chain pairing | ss 
    15716 Alignment algorithm | Needleman-Wunsch 
    15717 Similarity matrix | BLOSUM-62 
    15718 SS fraction | 0.3 
    15719 Gap open (HH/SS/other) | 18/18/6 
    15720 Gap extend | 1 
    15721 SS matrix |  |  | H | S | O 
    15722 ---|---|---|--- 
    15723 H | 6 | -9 | -6 
    15724 S |  | 6 | -6 
    15725 O |  |  | 4 
    15726 Iteration cutoff | 2 
    15727  
    15728 Matchmaker combination, chain 9 (#68) with combination, chain 9 (#72),
    15729 sequence alignment score = 674.3 
    15730 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    15731 0.000) 
    15732  
    15733 
    15734 > mmaker #73/9 to #69/9 pairing ss
    15735 
    15736 No molecules/chains to match specified 
    15737 
    15738 > mmaker #70/9 to #69/9 pairing ss
    15739 
    15740 Parameters 
    15741 --- 
    15742 Chain pairing | ss 
    15743 Alignment algorithm | Needleman-Wunsch 
    15744 Similarity matrix | BLOSUM-62 
    15745 SS fraction | 0.3 
    15746 Gap open (HH/SS/other) | 18/18/6 
    15747 Gap extend | 1 
    15748 SS matrix |  |  | H | S | O 
    15749 ---|---|---|--- 
    15750 H | 6 | -9 | -6 
    15751 S |  | 6 | -6 
    15752 O |  |  | 4 
    15753 Iteration cutoff | 2 
    15754  
    15755 Matchmaker combination, chain 9 (#69) with combination, chain 9 (#70),
    15756 sequence alignment score = 674.3 
    15757 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    15758 0.000) 
    15759  
    15760 
    15761 > color #70 #7a81ffff
    15762 
    15763 > color #71 #76d6ffff
    15764 
    15765 > color #72 #ff2f92ff
    15766 
    15767 > select add #71
    15768 
    15769 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    15770 
    15771 > view matrix models
    15772 > #71,0.73965,0.6697,-0.066478,-85.077,-0.66002,0.70255,-0.26608,246.86,-0.13149,0.24068,0.96166,-23.367
    15773 
    15774 > view matrix models
    15775 > #71,0.73965,0.6697,-0.066478,-84.958,-0.66002,0.70255,-0.26608,247.21,-0.13149,0.24068,0.96166,-23.39
    15776 
    15777 > select add #70
    15778 
    15779 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    15780 
    15781 > select subtract #71
    15782 
    15783 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    15784 
    15785 > view matrix models
    15786 > #70,0.65408,0.75641,-0.0045745,-101.44,-0.7191,0.61992,-0.314,239.62,-0.23468,0.20867,0.94941,8.0724
    15787 
    15788 > ui mousemode right "rotate selected models"
    15789 
    15790 > view matrix models
    15791 > #70,0.66216,0.74936,0.000628,-102.45,-0.71161,0.62906,-0.31288,235.82,-0.23486,0.20673,0.94979,8.4773
    15792 
    15793 > ui mousemode right "translate selected models"
    15794 
    15795 > view matrix models
    15796 > #70,0.66216,0.74936,0.000628,-105.12,-0.71161,0.62906,-0.31288,235.31,-0.23486,0.20673,0.94979,8.2739
    15797 
    15798 > ui mousemode right "rotate selected models"
    15799 
    15800 > view matrix models
    15801 > #70,0.67638,0.73648,0.0098907,-106.81,-0.69798,0.64519,-0.31073,228.49,-0.23523,0.20327,0.95045,9.0126
    15802 
    15803 > view matrix models
    15804 > #70,0.70632,0.7062,-0.048942,-93.82,-0.66482,0.63801,-0.38853,239.35,-0.24315,0.30696,0.92014,-7.207
    15805 
    15806 > ui mousemode right "translate selected models"
    15807 
    15808 > view matrix models
    15809 > #70,0.70632,0.7062,-0.048942,-92.779,-0.66482,0.63801,-0.38853,240.51,-0.24315,0.30696,0.92014,-7.2553
    15810 
    15811 > ui mousemode right "rotate selected models"
    15812 
    15813 > view matrix models
    15814 > #70,0.73671,0.65888,-0.15212,-67.005,-0.6529,0.63452,-0.41366,244.05,-0.17603,0.40406,0.89764,-38.231
    15815 
    15816 > view matrix models
    15817 > #70,0.72072,0.67305,-0.16605,-64.324,-0.68212,0.6458,-0.34302,232.92,-0.12363,0.36049,0.92454,-43.885
    15818 
    15819 > view matrix models
    15820 > #70,0.72259,0.68142,-0.11635,-76.65,-0.66895,0.64684,-0.36619,234.77,-0.17426,0.34244,0.92324,-29.547
    15821 
    15822 > view matrix models
    15823 > #70,0.72227,0.683,-0.10877,-78.485,-0.67409,0.66004,-0.33159,225.76,-0.15468,0.31282,0.93713,-29.363
    15824 
    15825 > ui mousemode right "translate selected models"
    15826 
    15827 > view matrix models
    15828 > #70,0.72227,0.683,-0.10877,-77.937,-0.67409,0.66004,-0.33159,226.32,-0.15468,0.31282,0.93713,-29.99
    15829 
    15830 > view matrix models
    15831 > #70,0.72227,0.683,-0.10877,-78.379,-0.67409,0.66004,-0.33159,226.27,-0.15468,0.31282,0.93713,-30.071
    15832 
    15833 > select add #72
    15834 
    15835 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    15836 
    15837 > select subtract #70
    15838 
    15839 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    15840 
    15841 > ui mousemode right "rotate selected models"
    15842 
    15843 > view matrix models
    15844 > #72,0.63006,0.77617,0.024125,-108.11,-0.73921,0.60899,-0.28756,214.1,-0.23789,0.16335,0.95746,18.963
    15845 
    15846 > undo
    15847 
    15848 > view matrix models
    15849 > #72,0.66869,0.74204,-0.047259,-93.402,-0.71541,0.62476,-0.31283,210.9,-0.20261,0.243,0.94863,-4.5164
    15850 
    15851 > ui mousemode right "translate selected models"
    15852 
    15853 > view matrix models
    15854 > #72,0.66869,0.74204,-0.047259,-97.23,-0.71541,0.62476,-0.31283,212.58,-0.20261,0.243,0.94863,-5.2719
    15855 
    15856 > view matrix models
    15857 > #72,0.66869,0.74204,-0.047259,-94.574,-0.71541,0.62476,-0.31283,209.36,-0.20261,0.243,0.94863,-3.545
    15858 
    15859 > ui mousemode right "rotate selected models"
    15860 
    15861 > view matrix models
    15862 > #72,0.67444,0.71994,0.16377,-133.2,-0.53902,0.63169,-0.55716,222.53,-0.50457,0.2875,0.8141,72.505
    15863 
    15864 > view matrix models
    15865 > #72,0.65811,0.73801,0.14909,-131.21,-0.55407,0.60879,-0.56779,232.9,-0.5098,0.29106,0.80956,73.623
    15866 
    15867 > view matrix models
    15868 > #72,0.74533,0.65345,0.13223,-125.41,-0.50818,0.68522,-0.52176,197.01,-0.43155,0.32168,0.84278,44.535
    15869 
    15870 > view matrix models
    15871 > #72,0.82102,0.56035,-0.10924,-70.043,-0.5281,0.67273,-0.51822,203.08,-0.21689,0.48316,0.84824,-35.813
    15872 
    15873 > view matrix models
    15874 > #72,0.55527,0.8209,-0.13342,-73.134,-0.83006,0.53702,-0.1504,219.25,-0.051812,0.19426,0.97958,-28.101
    15875 
    15876 > view matrix models
    15877 > #72,0.54869,0.81525,-0.18524,-60.085,-0.83586,0.53054,-0.14092,219.96,-0.016607,0.23215,0.97254,-42.304
    15878 
    15879 > view matrix models
    15880 > #72,0.62419,0.75273,-0.20922,-55.631,-0.77407,0.5596,-0.29608,232.48,-0.10579,0.34676,0.93197,-43.052
    15881 
    15882 > view matrix models
    15883 > #72,0.68973,0.70211,-0.17694,-63.321,-0.71802,0.63171,-0.29221,204.11,-0.093387,0.3286,0.93984,-42.885
    15884 
    15885 > view matrix models
    15886 > #72,0.7084,0.68997,-0.14872,-69.877,-0.67907,0.6088,-0.41016,225.56,-0.19245,0.39154,0.89981,-29.902
    15887 
    15888 > view matrix models
    15889 > #72,0.74709,0.59085,-0.30456,-23.165,-0.66434,0.64825,-0.37205,205.9,-0.022397,0.48029,0.87683,-79.017
    15890 
    15891 > view matrix models
    15892 > #72,0.73353,0.61204,-0.29552,-27.215,-0.6795,0.6696,-0.29986,189.38,0.014354,0.42077,0.90705,-78.605
    15893 
    15894 > view matrix models
    15895 > #72,0.77232,0.58182,-0.25497,-36.036,-0.63523,0.70956,-0.30497,172.53,0.0034793,0.39749,0.9176,-73.241
    15896 
    15897 > ui mousemode right "translate selected models"
    15898 
    15899 > view matrix models
    15900 > #72,0.77232,0.58182,-0.25497,-35.244,-0.63523,0.70956,-0.30497,172.28,0.0034793,0.39749,0.9176,-74.955
    15901 
    15902 > view matrix models
    15903 > #72,0.77232,0.58182,-0.25497,-34.045,-0.63523,0.70956,-0.30497,173.69,0.0034793,0.39749,0.9176,-76.606
    15904 
    15905 > ui mousemode right "rotate selected models"
    15906 
    15907 > view matrix models
    15908 > #72,0.78466,0.55956,-0.26682,-28.943,-0.61974,0.69768,-0.35939,184.38,-0.014948,0.44736,0.89423,-79.768
    15909 
    15910 > view matrix models
    15911 > #72,0.75065,0.65782,-0.061586,-86.343,-0.63614,0.69443,-0.33629,183.68,-0.17845,0.29161,0.93974,-21.048
    15912 
    15913 > ui mousemode right "translate selected models"
    15914 
    15915 > view matrix models
    15916 > #72,0.75065,0.65782,-0.061586,-86.699,-0.63614,0.69443,-0.33629,184.09,-0.17845,0.29161,0.93974,-19.065
    15917 
    15918 > ui mousemode right "rotate selected models"
    15919 
    15920 > view matrix models
    15921 > #72,0.7407,0.66968,-0.053753,-89.063,-0.65425,0.7008,-0.28432,175.68,-0.15273,0.24576,0.95722,-17.067
    15922 
    15923 > view matrix models
    15924 > #72,0.726,0.68527,-0.057589,-89.003,-0.66981,0.68568,-0.28496,182.34,-0.15579,0.24545,0.95681,-16.315
    15925 
    15926 > ui mousemode right "translate selected models"
    15927 
    15928 > view matrix models
    15929 > #72,0.726,0.68527,-0.057589,-90.161,-0.66981,0.68568,-0.28496,180.73,-0.15579,0.24545,0.95681,-16.599
    15930 
    15931 > ui mousemode right "rotate selected models"
    15932 
    15933 > view matrix models
    15934 > #72,0.75042,0.62456,-0.21632,-48.918,-0.63918,0.60238,-0.47811,232.9,-0.16831,0.49705,0.85124,-50.802
    15935 
    15936 > ui mousemode right "translate selected models"
    15937 
    15938 > view matrix models
    15939 > #72,0.75042,0.62456,-0.21632,-46.402,-0.63918,0.60238,-0.47811,235.46,-0.16831,0.49705,0.85124,-50.291
    15940 
    15941 > ui mousemode right "rotate selected models"
    15942 
    15943 > view matrix models
    15944 > #72,0.75038,0.58474,-0.30825,-18.662,-0.65688,0.6076,-0.44646,231.34,-0.073765,0.5375,0.84003,-75.865
    15945 
    15946 > undo
    15947 
    15948 > view matrix models
    15949 > #72,0.73029,0.65271,-0.20161,-51.913,-0.66839,0.62173,-0.40829,222.63,-0.14115,0.43292,0.89031,-48.723
    15950 
    15951 > view matrix models
    15952 > #72,0.7199,0.67032,-0.18008,-58.28,-0.67699,0.62091,-0.39516,221.86,-0.15307,0.40638,0.90079,-42.388
    15953 
    15954 > view matrix models
    15955 > #72,0.72134,0.67005,-0.17519,-59.488,-0.68172,0.6423,-0.3503,208.8,-0.12219,0.37212,0.92011,-44.442
    15956 
    15957 > view matrix models
    15958 > #72,0.72301,0.66886,-0.17287,-60.008,-0.68288,0.65407,-0.32537,201.28,-0.10456,0.35329,0.92965,-45.486
    15959 
    15960 > select clear
    15961 
    15962 > show #!69 models
    15963 
    15964 > hide #!69 models
    15965 
    15966 > show #!68 models
    15967 
    15968 > hide #!68 models
    15969 
    15970 > mmaker #72/9 to #68/9 pairing ss
    15971 
    15972 Parameters 
    15973 --- 
    15974 Chain pairing | ss 
    15975 Alignment algorithm | Needleman-Wunsch 
    15976 Similarity matrix | BLOSUM-62 
    15977 SS fraction | 0.3 
    15978 Gap open (HH/SS/other) | 18/18/6 
    15979 Gap extend | 1 
    15980 SS matrix |  |  | H | S | O 
    15981 ---|---|---|--- 
    15982 H | 6 | -9 | -6 
    15983 S |  | 6 | -6 
    15984 O |  |  | 4 
    15985 Iteration cutoff | 2 
    15986  
    15987 Matchmaker combination, chain 9 (#68) with combination, chain 9 (#72),
    15988 sequence alignment score = 674.3 
    15989 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    15990 0.000) 
    15991  
    15992 
    15993 > combine #13-18,57, 70,71
    15994 
    15995 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    15996 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    15997 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    15998 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    15999 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    16000 to 'q' 
    16001 Remapping chain ID '6' in combination #70 to '0' 
    16002 Remapping chain ID '7' in combination #70 to 'AA' 
    16003 Remapping chain ID '8' in combination #70 to 'AB' 
    16004 Remapping chain ID '9' in combination #70 to 'AC' 
    16005 Remapping chain ID 'o' in combination #70 to 'r' 
    16006 Remapping chain ID 'p' in combination #70 to 's' 
    16007 Remapping chain ID 'q' in combination #70 to 't' 
    16008 Remapping chain ID 'x' in combination #70 to 'y' 
    16009 Remapping chain ID '6' in combination #71 to 'AD' 
    16010 Remapping chain ID '7' in combination #71 to 'AE' 
    16011 Remapping chain ID '8' in combination #71 to 'AF' 
    16012 Remapping chain ID '9' in combination #71 to 'AG' 
    16013 Remapping chain ID 'o' in combination #71 to 'u' 
    16014 Remapping chain ID 'p' in combination #71 to 'v' 
    16015 Remapping chain ID 'q' in combination #71 to 'w' 
    16016 Remapping chain ID 'x' in combination #71 to 'z' 
    16017 
    16018 > select add #73
    16019 
    16020 7773 atoms, 7758 bonds, 12 pseudobonds, 501 residues, 2 models selected 
    16021 
    16022 > hide #!72 models
    16023 
    16024 > hide #!71 models
    16025 
    16026 > hide #!70 models
    16027 
    16028 > show #!72 models
    16029 
    16030 > hide #!72 models
    16031 
    16032 > hide #!73 models
    16033 
    16034 > select up
    16035 
    16036 7773 atoms, 7758 bonds, 12 pseudobonds, 501 residues, 2 models selected 
    16037 
    16038 > select up
    16039 
    16040 173444 atoms, 173307 bonds, 12 pseudobonds, 11148 residues, 81 models selected 
    16041 
    16042 > select up
    16043 
    16044 173444 atoms, 173307 bonds, 12 pseudobonds, 11148 residues, 81 models selected 
    16045 
    16046 > select down
    16047 
    16048 7773 atoms, 7758 bonds, 12 pseudobonds, 501 residues, 2 models selected 
    16049 
    16050 > mmaker #73/AG to #18/6 pairing ss
    16051 
    16052 Parameters 
    16053 --- 
    16054 Chain pairing | ss 
    16055 Alignment algorithm | Needleman-Wunsch 
    16056 Similarity matrix | BLOSUM-62 
    16057 SS fraction | 0.3 
    16058 Gap open (HH/SS/other) | 18/18/6 
    16059 Gap extend | 1 
    16060 SS matrix |  |  | H | S | O 
    16061 ---|---|---|--- 
    16062 H | 6 | -9 | -6 
    16063 S |  | 6 | -6 
    16064 O |  |  | 4 
    16065 Iteration cutoff | 2 
    16066  
    16067 Matchmaker copy of copy of copy of pointy-1pf.pdb, chain 6 (#18) with
    16068 combination, chain AG (#73), sequence alignment score = 670.7 
    16069 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    16070 0.000) 
    16071  
    16072 
    16073 > show #!73 models
    16074 
    16075 > show #!72 models
    16076 
    16077 > hide #!72 models
    16078 
    16079 > show #!71 models
    16080 
    16081 > hide #!71 models
    16082 
    16083 > show #!70 models
    16084 
    16085 > hide #!73 models
    16086 
    16087 > show #!73 models
    16088 
    16089 > hide #!73 models
    16090 
    16091 > show #!73 models
    16092 
    16093 > hide #!73 models
    16094 
    16095 > mmaker #73/AG to #70/9 pairing ss
    16096 
    16097 Parameters 
    16098 --- 
    16099 Chain pairing | ss 
    16100 Alignment algorithm | Needleman-Wunsch 
    16101 Similarity matrix | BLOSUM-62 
    16102 SS fraction | 0.3 
    16103 Gap open (HH/SS/other) | 18/18/6 
    16104 Gap extend | 1 
    16105 SS matrix |  |  | H | S | O 
    16106 ---|---|---|--- 
    16107 H | 6 | -9 | -6 
    16108 S |  | 6 | -6 
    16109 O |  |  | 4 
    16110 Iteration cutoff | 2 
    16111  
    16112 Matchmaker combination, chain 9 (#70) with combination, chain AG (#73),
    16113 sequence alignment score = 674.3 
    16114 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    16115 0.000) 
    16116  
    16117 
    16118 > show #!73 models
    16119 
    16120 > select clear
    16121 
    16122 > hide #!70 models
    16123 
    16124 > hide #!57 models
    16125 
    16126 > show #!57 models
    16127 
    16128 > hide #!73 models
    16129 
    16130 > show #!73 models
    16131 
    16132 > hide #!73 models
    16133 
    16134 > show #!73 models
    16135 
    16136 > hide #!73 models
    16137 
    16138 > show #!73 models
    16139 
    16140 > hide #!73 models
    16141 
    16142 > show #!72 models
    16143 
    16144 > show #!71 models
    16145 
    16146 > show #!70 models
    16147 
    16148 > select add #72
    16149 
    16150 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16151 
    16152 > view matrix models
    16153 > #72,0.67507,0.73603,-0.050421,-92.629,-0.68899,0.60455,-0.39977,227.94,-0.26376,0.30461,0.91523,0.008559
    16154 
    16155 > view matrix models
    16156 > #72,0.64366,0.76451,-0.035005,-96.15,-0.7364,0.60625,-0.30029,216.75,-0.20835,0.21906,0.95321,1.1998
    16157 
    16158 > select clear
    16159 
    16160 > select add #70
    16161 
    16162 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16163 
    16164 > ui mousemode right "rotate selected models"
    16165 
    16166 > view matrix models
    16167 > #70,0.68908,0.71891,-0.091369,-83.66,-0.70039,0.62829,-0.33868,240.16,-0.18607,0.29737,0.93646,-20.227
    16168 
    16169 > view matrix models
    16170 > #70,0.68822,0.71998,-0.089318,-84.155,-0.70262,0.63077,-0.32933,238.14,-0.18077,0.28941,0.93998,-20.143
    16171 
    16172 > select add #71
    16173 
    16174 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    16175 
    16176 > select subtract #70
    16177 
    16178 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16179 
    16180 > view matrix models
    16181 > #71,0.74084,0.668,-0.070293,-84.028,-0.65839,0.70147,-0.2729,248.52,-0.13299,0.24845,0.95947,-24.446
    16182 
    16183 > ui mousemode right "translate selected models"
    16184 
    16185 > view matrix models
    16186 > #71,0.74084,0.668,-0.070293,-83.981,-0.65839,0.70147,-0.2729,248.75,-0.13299,0.24845,0.95947,-24.418
    16187 
    16188 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    16189 > MRCLaboratoryofMolecularBiology/Documents/Carter
    16190 > Lab/Diorge/Membranes/Fit14-14.cxs"
    16191 
    16192 > combine #13-18,57, 70,71
    16193 
    16194 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    16195 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    16196 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    16197 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    16198 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    16199 to 'q' 
    16200 Remapping chain ID '6' in combination #70 to '0' 
    16201 Remapping chain ID '7' in combination #70 to 'AA' 
    16202 Remapping chain ID '8' in combination #70 to 'AB' 
    16203 Remapping chain ID '9' in combination #70 to 'AC' 
    16204 Remapping chain ID 'o' in combination #70 to 'r' 
    16205 Remapping chain ID 'p' in combination #70 to 's' 
    16206 Remapping chain ID 'q' in combination #70 to 't' 
    16207 Remapping chain ID 'x' in combination #70 to 'y' 
    16208 Remapping chain ID '6' in combination #71 to 'AD' 
    16209 Remapping chain ID '7' in combination #71 to 'AE' 
    16210 Remapping chain ID '8' in combination #71 to 'AF' 
    16211 Remapping chain ID '9' in combination #71 to 'AG' 
    16212 Remapping chain ID 'o' in combination #71 to 'u' 
    16213 Remapping chain ID 'p' in combination #71 to 'v' 
    16214 Remapping chain ID 'q' in combination #71 to 'w' 
    16215 Remapping chain ID 'x' in combination #71 to 'z' 
    16216 
    16217 > close #74
    16218 
    16219 > combine #13-18,57
    16220 
    16221 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    16222 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    16223 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    16224 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    16225 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    16226 to 'q' 
    16227 
    16228 > select add #74
    16229 
    16230 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    16231 
    16232 > select subtract #71
    16233 
    16234 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16235 
    16236 > ui mousemode right "translate selected models"
    16237 
    16238 > view matrix models
    16239 > #74,0.72714,0.68586,-0.029519,-91.483,-0.66467,0.69261,-0.28017,277.39,-0.17171,0.22334,0.9595,-13.253
    16240 
    16241 > view matrix models
    16242 > #74,0.72714,0.68586,-0.029519,-92.01,-0.66467,0.69261,-0.28017,278.05,-0.17171,0.22334,0.9595,-11.071
    16243 
    16244 > view matrix models
    16245 > #74,0.72714,0.68586,-0.029519,-91.514,-0.66467,0.69261,-0.28017,278.23,-0.17171,0.22334,0.9595,-12.055
    16246 
    16247 > ui mousemode right "rotate selected models"
    16248 
    16249 > view matrix models
    16250 > #74,0.75915,0.63699,-0.13392,-65.455,-0.64465,0.70727,-0.29017,272.94,-0.09012,0.30661,0.94756,-44.81
    16251 
    16252 > view matrix models
    16253 > #74,0.75087,0.65489,-0.085554,-77.717,-0.6439,0.69705,-0.31546,280.26,-0.14696,0.29196,0.94507,-29.8
    16254 
    16255 > ui mousemode right "translate selected models"
    16256 
    16257 > view matrix models
    16258 > #74,0.75087,0.65489,-0.085554,-78.619,-0.6439,0.69705,-0.31546,280.82,-0.14696,0.29196,0.94507,-28.282
    16259 
    16260 > view matrix models
    16261 > #74,0.75087,0.65489,-0.085554,-78.439,-0.6439,0.69705,-0.31546,280.94,-0.14696,0.29196,0.94507,-28.723
    16262 
    16263 > ui mousemode right "translate selected models"
    16264 
    16265 > ui mousemode right "rotate selected models"
    16266 
    16267 > view matrix models
    16268 > #74,0.7948,0.59523,-0.11826,-66.699,-0.60045,0.74308,-0.29546,257.79,-0.087987,0.30584,0.94801,-44.065
    16269 
    16270 > view matrix models
    16271 > #74,0.80729,0.57849,-0.11676,-65.592,-0.57881,0.73752,-0.34791,265.42,-0.11515,0.34845,0.93023,-44.971
    16272 
    16273 > view matrix models
    16274 > #74,0.79897,0.59725,-0.070257,-77.67,-0.57818,0.73077,-0.36287,269.87,-0.16538,0.33054,0.92919,-30.797
    16275 
    16276 > view matrix models
    16277 > #74,0.80385,0.58392,-0.11342,-66.842,-0.57947,0.72567,-0.37098,272.94,-0.13432,0.36394,0.92169,-43.061
    16278 
    16279 > view matrix models
    16280 > #74,0.80031,0.59481,-0.075562,-76.298,-0.57421,0.72406,-0.38211,274.52,-0.17257,0.3492,0.92102,-32.038
    16281 
    16282 > view matrix models
    16283 > #74,0.83009,0.55132,-0.08365,-70.48,-0.52254,0.71669,-0.46186,282.2,-0.19468,0.4271,0.883,-37.98
    16284 
    16285 > view matrix models
    16286 > #74,0.82771,0.55698,-0.06834,-74.409,-0.52006,0.71562,-0.46628,282.85,-0.21081,0.42149,0.88199,-33.326
    16287 
    16288 > ui mousemode right "translate selected models"
    16289 
    16290 > view matrix models
    16291 > #74,0.82771,0.55698,-0.06834,-74.708,-0.52006,0.71562,-0.46628,282.83,-0.21081,0.42149,0.88199,-32.308
    16292 
    16293 > view matrix models
    16294 > #74,0.82771,0.55698,-0.06834,-73.739,-0.52006,0.71562,-0.46628,282.7,-0.21081,0.42149,0.88199,-34.033
    16295 
    16296 > ui mousemode right "rotate selected models"
    16297 
    16298 > view matrix models
    16299 > #74,0.7457,0.65023,-0.14537,-63.61,-0.63039,0.6179,-0.46991,327.55,-0.21572,0.44205,0.87066,-35.521
    16300 
    16301 > view matrix models
    16302 > #74,0.75513,0.64106,-0.13721,-64.991,-0.6193,0.62889,-0.47007,322.88,-0.21505,0.43994,0.8719,-35.415
    16303 
    16304 > view matrix models
    16305 > #74,0.75883,0.63736,-0.13396,-65.52,-0.61485,0.63322,-0.4701,321.02,-0.21479,0.43909,0.87239,-35.369
    16306 
    16307 > select add #72
    16308 
    16309 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    16310 
    16311 > select subtract #74
    16312 
    16313 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16314 
    16315 > ui mousemode right "rotate selected models"
    16316 
    16317 > view matrix models
    16318 > #72,0.68121,0.73198,-0.012598,-100.53,-0.69942,0.64563,-0.30655,201.7,-0.21625,0.21763,0.95177,3.3657
    16319 
    16320 > color #74 #fffc79ff
    16321 
    16322 > select add #74
    16323 
    16324 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    16325 
    16326 > select subtract #72
    16327 
    16328 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16329 
    16330 > ui mousemode right "translate selected models"
    16331 
    16332 > view matrix models
    16333 > #74,0.75883,0.63736,-0.13396,-66.224,-0.61485,0.63322,-0.4701,321.05,-0.21479,0.43909,0.87239,-32.922
    16334 
    16335 > view matrix models
    16336 > #74,0.75883,0.63736,-0.13396,-66.1,-0.61485,0.63322,-0.4701,321.05,-0.21479,0.43909,0.87239,-33.296
    16337 
    16338 > view matrix models
    16339 > #74,0.75883,0.63736,-0.13396,-66.075,-0.61485,0.63322,-0.4701,321.38,-0.21479,0.43909,0.87239,-33.284
    16340 
    16341 > ui mousemode right "rotate selected models"
    16342 
    16343 > view matrix models
    16344 > #74,0.81385,0.5728,-0.097706,-69.296,-0.55023,0.70562,-0.44648,287.28,-0.1868,0.41713,0.88944,-37.149
    16345 
    16346 > ui mousemode right "translate selected models"
    16347 
    16348 > view matrix models
    16349 > #74,0.81385,0.5728,-0.097706,-71.327,-0.55023,0.70562,-0.44648,285.25,-0.1868,0.41713,0.88944,-38.156
    16350 
    16351 > select add #70
    16352 
    16353 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    16354 
    16355 > select subtract #74
    16356 
    16357 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16358 
    16359 > view matrix models
    16360 > #70,0.68822,0.71998,-0.089318,-82.412,-0.70262,0.63077,-0.32933,235.55,-0.18077,0.28941,0.93998,-19.822
    16361 
    16362 > view matrix models
    16363 > #70,0.68822,0.71998,-0.089318,-82.958,-0.70262,0.63077,-0.32933,235.51,-0.18077,0.28941,0.93998,-19.875
    16364 
    16365 > ui mousemode right "rotate selected models"
    16366 
    16367 > view matrix models
    16368 > #70,0.64313,0.76067,-0.088141,-83.736,-0.74163,0.59006,-0.31908,250.47,-0.19071,0.27058,0.94362,-14.326
    16369 
    16370 > select add #72
    16371 
    16372 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    16373 
    16374 > select subtract #70
    16375 
    16376 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16377 
    16378 > view matrix models
    16379 > #72,0.70016,0.71159,-0.05842,-90.299,-0.6914,0.65532,-0.30417,197.41,-0.17816,0.25336,0.95082,-12.135
    16380 
    16381 > view matrix models
    16382 > #72,0.69809,0.71355,-0.059234,-90.181,-0.69605,0.6569,-0.28982,195.06,-0.16789,0.24355,0.95525,-12.779
    16383 
    16384 > select add #70
    16385 
    16386 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    16387 
    16388 > select subtract #72
    16389 
    16390 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16391 
    16392 > view matrix models
    16393 > #70,0.64808,0.7514,-0.12406,-75.322,-0.7362,0.57641,-0.35463,259.72,-0.19496,0.32116,0.92674,-21.738
    16394 
    16395 > undo
    16396 
    16397 > view matrix models
    16398 > #70,0.67049,0.73737,-0.082054,-84.956,-0.71853,0.61782,-0.3194,239.61,-0.18482,0.27311,0.94406,-16.152
    16399 
    16400 > select add #74
    16401 
    16402 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    16403 
    16404 > view matrix models
    16405 > #70,0.65465,0.75053,-0.090174,-84.053,-0.73246,0.60031,-0.32114,246.75,-0.1869,0.27628,0.94273,-16.349,#74,0.8017,0.58778,-0.10857,-69.394,-0.56737,0.69117,-0.44763,292.16,-0.18807,0.42046,0.8876,-38.162
    16406 
    16407 > undo
    16408 
    16409 > select subtract #70
    16410 
    16411 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16412 
    16413 > ui mousemode right "translate selected models"
    16414 
    16415 > view matrix models
    16416 > #74,0.81385,0.5728,-0.097706,-69.674,-0.55023,0.70562,-0.44648,285.6,-0.1868,0.41713,0.88944,-37.885
    16417 
    16418 > view matrix models
    16419 > #74,0.81385,0.5728,-0.097706,-69.173,-0.55023,0.70562,-0.44648,285.37,-0.1868,0.41713,0.88944,-37.724
    16420 
    16421 > view matrix models
    16422 > #74,0.81385,0.5728,-0.097706,-69.208,-0.55023,0.70562,-0.44648,285.68,-0.1868,0.41713,0.88944,-37.467
    16423 
    16424 > ui mousemode right "rotate selected models"
    16425 
    16426 > view matrix models
    16427 > #74,0.80811,0.58494,-0.069333,-76.607,-0.5483,0.70398,-0.45143,286.68,-0.21525,0.40282,0.88961,-28.631
    16428 
    16429 > view matrix models
    16430 > #74,0.80671,0.58758,-0.06302,-78.215,-0.54784,0.70362,-0.45253,286.89,-0.22155,0.39959,0.88952,-26.633
    16431 
    16432 > view matrix models
    16433 > #74,0.78436,0.61494,-0.081382,-76.435,-0.57954,0.67971,-0.44958,298.01,-0.22115,0.39979,0.88953,-26.763
    16434 
    16435 > view matrix models
    16436 > #74,0.7698,0.63174,-0.091207,-75.469,-0.59748,0.66292,-0.45116,305.72,-0.22455,0.4018,0.88777,-26.203
    16437 
    16438 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    16439 > MRCLaboratoryofMolecularBiology/Documents/Carter
    16440 > Lab/Diorge/Membranes/Fit14-15.cxs"
    16441 
    16442 > select add #72
    16443 
    16444 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    16445 
    16446 > select subtract #74
    16447 
    16448 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16449 
    16450 > hide #!70-74 target m
    16451 
    16452 > hide #!57 models
    16453 
    16454 > hide #!12-20 target m
    16455 
    16456 > show #!9 models
    16457 
    16458 > hide #!9 models
    16459 
    16460 > hide #!8 models
    16461 
    16462 > hide #!13-18 target m
    16463 
    16464 [Repeated 1 time(s)]
    16465 
    16466 > show #!13-18 target m
    16467 
    16468 > show #!55 models
    16469 
    16470 > select subtract #72
    16471 
    16472 Nothing selected 
    16473 
    16474 > hide #!55 models
    16475 
    16476 > show #!55 models
    16477 
    16478 > hide #!55 models
    16479 
    16480 > show #!57 models
    16481 
    16482 > show #!8 models
    16483 
    16484 > show #!7 models
    16485 
    16486 > show #!72 models
    16487 
    16488 > show #!73 models
    16489 
    16490 > show #!74 models
    16491 
    16492 > show #!71 models
    16493 
    16494 > hide #!73 models
    16495 
    16496 > show #!73 models
    16497 
    16498 > hide #!72 models
    16499 
    16500 > show #!72 models
    16501 
    16502 > hide #!74 models
    16503 
    16504 > show #!74 models
    16505 
    16506 > hide #!71 models
    16507 
    16508 > show #!71 models
    16509 
    16510 > hide #!57 models
    16511 
    16512 > show #!57 models
    16513 
    16514 > hide #!73 models
    16515 
    16516 > show #!73 models
    16517 
    16518 > hide #!73 models
    16519 
    16520 > show #!70 models
    16521 
    16522 > close #73
    16523 
    16524 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    16525 > MRCLaboratoryofMolecularBiology/Documents/Carter
    16526 > Lab/Diorge/Membranes/Fit14-15.cxs"
    16527 
    16528 > combine #13-18,57
    16529 
    16530 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    16531 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    16532 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    16533 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    16534 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    16535 to 'q' 
    16536 
    16537 > hide #!57 models
    16538 
    16539 > hide #!12-19 target m
    16540 
    16541 > select clear
    16542 
    16543 > hide #!7 models
    16544 
    16545 > hide #!8 models
    16546 
    16547 Drag select of 820 residues, 5 pseudobonds 
    16548 
    16549 > ui tool show "Color Zone"
    16550 
    16551 > color zone #5 near sel distance 9.04
    16552 
    16553 > show #!7 models
    16554 
    16555 > color zone #7 near sel distance 9.04
    16556 
    16557 > color zone #7 near sel distance 10.19
    16558 
    16559 > color zone #7 near sel distance 2.76
    16560 
    16561 > volume #7 level 0.01496
    16562 
    16563 > volume #7 level 0.01358
    16564 
    16565 > volume #7 level 0.009636
    16566 
    16567 > hide #!7 models
    16568 
    16569 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    16570 > MRCLaboratoryofMolecularBiology/Documents/Carter
    16571 > Lab/Diorge/Membranes/1-2.pdb" models #72 format pdb
    16572 
    16573 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    16574 > MRCLaboratoryofMolecularBiology/Documents/Carter
    16575 > Lab/Diorge/Membranes/2-2.pdb" models #70 format pdb
    16576 
    16577 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    16578 > MRCLaboratoryofMolecularBiology/Documents/Carter
    16579 > Lab/Diorge/Membranes/3-2.pdb" models #73 format pdb
    16580 
    16581 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    16582 > MRCLaboratoryofMolecularBiology/Documents/Carter
    16583 > Lab/Diorge/Membranes/4-2.pdb" models #71 format pdb
    16584 
    16585 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    16586 > MRCLaboratoryofMolecularBiology/Documents/Carter
    16587 > Lab/Diorge/Membranes/5-2.pdb" models #74 format pdb
    16588 
    16589 > show #!9 models
    16590 
    16591 > hide #!9 models
    16592 
    16593 > show #!8 models
    16594 
    16595 > select add #8
    16596 
    16597 12850 atoms, 5 pseudobonds, 820 residues, 12 models selected 
    16598 
    16599 > select subtract #8
    16600 
    16601 12850 atoms, 5 pseudobonds, 820 residues, 10 models selected 
    16602 
    16603 > select add #70
    16604 
    16605 12871 atoms, 2586 bonds, 8 pseudobonds, 823 residues, 10 models selected 
    16606 
    16607 > select subtract #70
    16608 
    16609 10280 atoms, 4 pseudobonds, 656 residues, 8 models selected 
    16610 
    16611 > select add #71
    16612 
    16613 10301 atoms, 2586 bonds, 7 pseudobonds, 659 residues, 8 models selected 
    16614 
    16615 > select subtract #71
    16616 
    16617 7710 atoms, 3 pseudobonds, 492 residues, 6 models selected 
    16618 
    16619 > select add #72
    16620 
    16621 7731 atoms, 2586 bonds, 6 pseudobonds, 495 residues, 6 models selected 
    16622 
    16623 > select subtract #72
    16624 
    16625 5140 atoms, 2 pseudobonds, 328 residues, 4 models selected 
    16626 
    16627 > select add #73
    16628 
    16629 5161 atoms, 2586 bonds, 5 pseudobonds, 331 residues, 4 models selected 
    16630 
    16631 > select clear
    16632 
    16633 > select add #70
    16634 
    16635 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16636 
    16637 > view matrix models
    16638 > #70,0.69873,0.71215,-0.067899,-87.536,-0.69198,0.64874,-0.31671,226.74,-0.1815,0.26828,0.94609,-16.099
    16639 
    16640 > ui mousemode right "translate selected models"
    16641 
    16642 > view matrix models
    16643 > #70,0.69873,0.71215,-0.067899,-86.971,-0.69198,0.64874,-0.31671,227.29,-0.1815,0.26828,0.94609,-15.892
    16644 
    16645 > view matrix models
    16646 > #70,0.69873,0.71215,-0.067899,-88.07,-0.69198,0.64874,-0.31671,227.82,-0.1815,0.26828,0.94609,-16.022
    16647 
    16648 > view matrix models
    16649 > #70,0.69873,0.71215,-0.067899,-87.812,-0.69198,0.64874,-0.31671,227.8,-0.1815,0.26828,0.94609,-16.304
    16650 
    16651 > view matrix models
    16652 > #70,0.69873,0.71215,-0.067899,-87.788,-0.69198,0.64874,-0.31671,228.07,-0.1815,0.26828,0.94609,-16.308
    16653 
    16654 > select add #74
    16655 
    16656 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    16657 
    16658 > select subtract #70
    16659 
    16660 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16661 
    16662 > view matrix models
    16663 > #74,0.7698,0.63174,-0.091207,-76.808,-0.59748,0.66292,-0.45116,307.25,-0.22455,0.4018,0.88777,-26.683
    16664 
    16665 > ui mousemode right "rotate selected models"
    16666 
    16667 > view matrix models
    16668 > #74,0.76993,0.63181,-0.08962,-77.17,-0.59647,0.6626,-0.45297,307.49,-0.22681,0.40221,0.88701,-26.182
    16669 
    16670 > view matrix models
    16671 > #74,0.80652,0.57012,-0.1565,-56.625,-0.54148,0.60608,-0.58263,335.91,-0.23732,0.55465,0.79752,-41.181
    16672 
    16673 > view matrix models
    16674 > #74,0.69961,0.71412,-0.02414,-95.576,-0.58566,0.55374,-0.59192,358.49,-0.40934,0.42825,0.80563,19.996
    16675 
    16676 > view matrix models
    16677 > #74,0.69116,0.72261,-0.011268,-98.477,-0.5992,0.56427,-0.56794,353.88,-0.40404,0.39929,0.82299,22.127
    16678 
    16679 > view matrix models
    16680 > #74,0.74989,0.62636,-0.21292,-47.103,-0.66138,0.7173,-0.21924,260.42,0.015402,0.30523,0.95215,-64.431
    16681 
    16682 > view matrix models
    16683 > #74,0.74421,0.59088,-0.31146,-17.927,-0.66793,0.66124,-0.34151,299.3,0.0041565,0.46219,0.88677,-85.193
    16684 
    16685 > view matrix models
    16686 > #74,0.69238,0.69071,-0.20865,-51.523,-0.70932,0.59859,-0.37222,328.04,-0.1322,0.40572,0.90439,-49.03
    16687 
    16688 > ui mousemode right "translate selected models"
    16689 
    16690 > view matrix models
    16691 > #74,0.69238,0.69071,-0.20865,-50.641,-0.70932,0.59859,-0.37222,326.15,-0.1322,0.40572,0.90439,-49.316
    16692 
    16693 > view matrix models
    16694 > #74,0.69238,0.69071,-0.20865,-50.302,-0.70932,0.59859,-0.37222,325.96,-0.1322,0.40572,0.90439,-49.335
    16695 
    16696 > ui mousemode right "rotate selected models"
    16697 
    16698 > view matrix models
    16699 > #74,0.77665,0.61015,-0.15665,-58.744,-0.61419,0.67818,-0.40355,295.31,-0.13999,0.40963,0.90145,-48.117
    16700 
    16701 > show #!7 models
    16702 
    16703 > hide #!7 models
    16704 
    16705 > hide #!8 models
    16706 
    16707 > show #!8 models
    16708 
    16709 > show #!11 models
    16710 
    16711 > hide #!11 models
    16712 
    16713 > show #!12 models
    16714 
    16715 > hide #!12 models
    16716 
    16717 > show #!9 models
    16718 
    16719 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    16720 > MRCLaboratoryofMolecularBiology/Documents/Carter
    16721 > Lab/Diorge/Membranes/Fit14-16.cxs"
    16722 
    16723 > select add #13
    16724 
    16725 2687 atoms, 2681 bonds, 5 pseudobonds, 175 residues, 4 models selected 
    16726 
    16727 > select subtract #13
    16728 
    16729 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    16730 
    16731 > show #!13-18 target m
    16732 
    16733 > show #!57 models
    16734 
    16735 > hide #!73 models
    16736 
    16737 > select subtract #74
    16738 
    16739 Nothing selected 
    16740 
    16741 > select add #16
    16742 
    16743 241 atoms, 240 bonds, 15 residues, 1 model selected 
    16744 
    16745 > ui mousemode right "rotate selected models"
    16746 
    16747 > view matrix models
    16748 > #16,0.92051,-0.13436,-0.3669,121.02,0.049784,0.97169,-0.23094,66.092,0.38754,0.19432,0.90114,-96.408
    16749 
    16750 > ui mousemode right "translate selected models"
    16751 
    16752 > view matrix models
    16753 > #16,0.92051,-0.13436,-0.3669,118.19,0.049784,0.97169,-0.23094,66.25,0.38754,0.19432,0.90114,-95.105
    16754 
    16755 > view matrix models
    16756 > #16,0.92051,-0.13436,-0.3669,118.21,0.049784,0.97169,-0.23094,66.455,0.38754,0.19432,0.90114,-94.334
    16757 
    16758 > view matrix models
    16759 > #16,0.92051,-0.13436,-0.3669,118.04,0.049784,0.97169,-0.23094,66.567,0.38754,0.19432,0.90114,-94.232
    16760 
    16761 > view matrix models
    16762 > #16,0.92051,-0.13436,-0.3669,117.35,0.049784,0.97169,-0.23094,66.386,0.38754,0.19432,0.90114,-94.688
    16763 
    16764 > view matrix models
    16765 > #16,0.92051,-0.13436,-0.3669,117.56,0.049784,0.97169,-0.23094,66.41,0.38754,0.19432,0.90114,-94.664
    16766 
    16767 > view matrix models
    16768 > #16,0.92051,-0.13436,-0.3669,117.52,0.049784,0.97169,-0.23094,66.727,0.38754,0.19432,0.90114,-94.349
    16769 
    16770 > view matrix models
    16771 > #16,0.92051,-0.13436,-0.3669,117.25,0.049784,0.97169,-0.23094,66.666,0.38754,0.19432,0.90114,-94.66
    16772 
    16773 > select subtract #16
    16774 
    16775 Nothing selected 
    16776 
    16777 > select add #15
    16778 
    16779 209 atoms, 208 bonds, 15 residues, 1 model selected 
    16780 
    16781 > select subtract #15
    16782 
    16783 Nothing selected 
    16784 
    16785 > select add #14
    16786 
    16787 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    16788 
    16789 > ui mousemode right "rotate selected models"
    16790 
    16791 > view matrix models
    16792 > #14,0.94805,0.15621,0.27711,-76.192,-0.2304,0.93784,0.25957,-15.14,-0.21934,-0.30993,0.92511,124.25
    16793 
    16794 > ui mousemode right "translate selected models"
    16795 
    16796 > view matrix models
    16797 > #14,0.94805,0.15621,0.27711,-72.912,-0.2304,0.93784,0.25957,-17.07,-0.21934,-0.30993,0.92511,122.14
    16798 
    16799 > view matrix models
    16800 > #14,0.94805,0.15621,0.27711,-73.415,-0.2304,0.93784,0.25957,-17.152,-0.21934,-0.30993,0.92511,122.28
    16801 
    16802 > view matrix models
    16803 > #14,0.94805,0.15621,0.27711,-73.642,-0.2304,0.93784,0.25957,-17.242,-0.21934,-0.30993,0.92511,123.11
    16804 
    16805 > ui mousemode right "rotate selected models"
    16806 
    16807 > view matrix models
    16808 > #14,0.9503,0.16371,0.26483,-73.298,-0.23482,0.93539,0.26439,-16.791,-0.20444,-0.31344,0.92734,120.53
    16809 
    16810 > view matrix models
    16811 > #14,0.9534,0.17517,0.24567,-72.632,-0.22949,0.9496,0.21351,-11.11,-0.19589,-0.25994,0.94555,104.35
    16812 
    16813 > ui mousemode right "translate selected models"
    16814 
    16815 > view matrix models
    16816 > #14,0.9534,0.17517,0.24567,-72.771,-0.22949,0.9496,0.21351,-10.817,-0.19589,-0.25994,0.94555,103.34
    16817 
    16818 > view matrix models
    16819 > #14,0.9534,0.17517,0.24567,-73.025,-0.22949,0.9496,0.21351,-11.017,-0.19589,-0.25994,0.94555,103.19
    16820 
    16821 > view matrix models
    16822 > #14,0.9534,0.17517,0.24567,-73.274,-0.22949,0.9496,0.21351,-11.237,-0.19589,-0.25994,0.94555,103.47
    16823 
    16824 > view matrix models
    16825 > #14,0.9534,0.17517,0.24567,-73.158,-0.22949,0.9496,0.21351,-11.232,-0.19589,-0.25994,0.94555,103.68
    16826 
    16827 > view matrix models
    16828 > #14,0.9534,0.17517,0.24567,-73.015,-0.22949,0.9496,0.21351,-11.257,-0.19589,-0.25994,0.94555,104.12
    16829 
    16830 > view matrix models
    16831 > #14,0.9534,0.17517,0.24567,-72.914,-0.22949,0.9496,0.21351,-11.32,-0.19589,-0.25994,0.94555,103.84
    16832 
    16833 > combine #13-18,57
    16834 
    16835 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    16836 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    16837 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    16838 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    16839 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    16840 to 'q' 
    16841 
    16842 > combine #13-18,57
    16843 
    16844 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    16845 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    16846 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    16847 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    16848 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    16849 to 'q' 
    16850 
    16851 > combine #13-18,57
    16852 
    16853 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    16854 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    16855 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    16856 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    16857 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    16858 to 'q' 
    16859 
    16860 > combine #13-18,57
    16861 
    16862 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    16863 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    16864 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    16865 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    16866 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    16867 to 'q' 
    16868 
    16869 > hide #!9 models
    16870 
    16871 > select up
    16872 
    16873 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    16874 
    16875 > select up
    16876 
    16877 181217 atoms, 181065 bonds, 1 pseudobond, 11649 residues, 86 models selected 
    16878 
    16879 > select up
    16880 
    16881 181217 atoms, 181065 bonds, 1 pseudobond, 11649 residues, 86 models selected 
    16882 
    16883 > select up
    16884 
    16885 181217 atoms, 181065 bonds, 1 pseudobond, 11649 residues, 86 models selected 
    16886 
    16887 > select down
    16888 
    16889 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    16890 
    16891 > hide #!74 models
    16892 
    16893 > show #!74 models
    16894 
    16895 > mmaker #75/9 to #70/9 pairing ss
    16896 
    16897 Parameters 
    16898 --- 
    16899 Chain pairing | ss 
    16900 Alignment algorithm | Needleman-Wunsch 
    16901 Similarity matrix | BLOSUM-62 
    16902 SS fraction | 0.3 
    16903 Gap open (HH/SS/other) | 18/18/6 
    16904 Gap extend | 1 
    16905 SS matrix |  |  | H | S | O 
    16906 ---|---|---|--- 
    16907 H | 6 | -9 | -6 
    16908 S |  | 6 | -6 
    16909 O |  |  | 4 
    16910 Iteration cutoff | 2 
    16911  
    16912 Matchmaker combination, chain 9 (#70) with combination, chain 9 (#75),
    16913 sequence alignment score = 674.3 
    16914 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    16915 0.000) 
    16916  
    16917 
    16918 > mmaker #76/9 to #71/9 pairing ss
    16919 
    16920 Parameters 
    16921 --- 
    16922 Chain pairing | ss 
    16923 Alignment algorithm | Needleman-Wunsch 
    16924 Similarity matrix | BLOSUM-62 
    16925 SS fraction | 0.3 
    16926 Gap open (HH/SS/other) | 18/18/6 
    16927 Gap extend | 1 
    16928 SS matrix |  |  | H | S | O 
    16929 ---|---|---|--- 
    16930 H | 6 | -9 | -6 
    16931 S |  | 6 | -6 
    16932 O |  |  | 4 
    16933 Iteration cutoff | 2 
    16934  
    16935 Matchmaker combination, chain 9 (#71) with combination, chain 9 (#76),
    16936 sequence alignment score = 674.3 
    16937 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    16938 0.000) 
    16939  
    16940 
    16941 > mmaker #77/9 to #72/9 pairing ss
    16942 
    16943 Parameters 
    16944 --- 
    16945 Chain pairing | ss 
    16946 Alignment algorithm | Needleman-Wunsch 
    16947 Similarity matrix | BLOSUM-62 
    16948 SS fraction | 0.3 
    16949 Gap open (HH/SS/other) | 18/18/6 
    16950 Gap extend | 1 
    16951 SS matrix |  |  | H | S | O 
    16952 ---|---|---|--- 
    16953 H | 6 | -9 | -6 
    16954 S |  | 6 | -6 
    16955 O |  |  | 4 
    16956 Iteration cutoff | 2 
    16957  
    16958 Matchmaker combination, chain 9 (#72) with combination, chain 9 (#77),
    16959 sequence alignment score = 674.3 
    16960 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    16961 0.000) 
    16962  
    16963 
    16964 > mmaker #78/9 to #74/9 pairing ss
    16965 
    16966 Parameters 
    16967 --- 
    16968 Chain pairing | ss 
    16969 Alignment algorithm | Needleman-Wunsch 
    16970 Similarity matrix | BLOSUM-62 
    16971 SS fraction | 0.3 
    16972 Gap open (HH/SS/other) | 18/18/6 
    16973 Gap extend | 1 
    16974 SS matrix |  |  | H | S | O 
    16975 ---|---|---|--- 
    16976 H | 6 | -9 | -6 
    16977 S |  | 6 | -6 
    16978 O |  |  | 4 
    16979 Iteration cutoff | 2 
    16980  
    16981 Matchmaker combination, chain 9 (#74) with combination, chain 9 (#78),
    16982 sequence alignment score = 674.3 
    16983 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    16984 0.000) 
    16985  
    16986 
    16987 > color #75 #d4fb79ff
    16988 
    16989 > color #76 #0433ffff
    16990 
    16991 > color #77 #d783ffff
    16992 
    16993 > color #78 #73fdffff
    16994 
    16995 > hide #!75 models
    16996 
    16997 > show #!75 models
    16998 
    16999 > hide #!74 models
    17000 
    17001 > hide #!72 models
    17002 
    17003 > hide #!71 models
    17004 
    17005 > hide #!70 models
    17006 
    17007 > hide #!75-78 target m
    17008 
    17009 > show #!75-78 target m
    17010 
    17011 > hide #!75-78 target m
    17012 
    17013 > select subtract #14
    17014 
    17015 Nothing selected 
    17016 
    17017 > select add #18
    17018 
    17019 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    17020 
    17021 > select subtract #18
    17022 
    17023 Nothing selected 
    17024 
    17025 > select add #17
    17026 
    17027 257 atoms, 259 bonds, 15 residues, 1 model selected 
    17028 
    17029 > select subtract #17
    17030 
    17031 Nothing selected 
    17032 
    17033 > select add #16
    17034 
    17035 241 atoms, 240 bonds, 15 residues, 1 model selected 
    17036 
    17037 > ui mousemode right "rotate selected models"
    17038 
    17039 > view matrix models
    17040 > #16,0.91919,-0.064102,-0.38857,106.47,-0.0059604,0.98429,-0.17648,63.832,0.39378,0.16453,0.90436,-89.995
    17041 
    17042 > ui mousemode right "translate selected models"
    17043 
    17044 > view matrix models
    17045 > #16,0.91919,-0.064102,-0.38857,108.15,-0.0059604,0.98429,-0.17648,63.276,0.39378,0.16453,0.90436,-90.619
    17046 
    17047 > view sel
    17048 
    17049 > view matrix models
    17050 > #16,0.91919,-0.064102,-0.38857,108.2,-0.0059604,0.98429,-0.17648,63.437,0.39378,0.16453,0.90436,-90.095
    17051 
    17052 > view matrix models
    17053 > #16,0.91919,-0.064102,-0.38857,108.08,-0.0059604,0.98429,-0.17648,63.668,0.39378,0.16453,0.90436,-89.847
    17054 
    17055 > view matrix models
    17056 > #16,0.91919,-0.064102,-0.38857,108.19,-0.0059604,0.98429,-0.17648,63.571,0.39378,0.16453,0.90436,-89.88
    17057 
    17058 > view matrix models
    17059 > #16,0.91919,-0.064102,-0.38857,108.19,-0.0059604,0.98429,-0.17648,63.713,0.39378,0.16453,0.90436,-89.951
    17060 
    17061 > view matrix models
    17062 > #16,0.91919,-0.064102,-0.38857,108.23,-0.0059604,0.98429,-0.17648,63.498,0.39378,0.16453,0.90436,-89.929
    17063 
    17064 > select add #17
    17065 
    17066 498 atoms, 499 bonds, 30 residues, 2 models selected 
    17067 
    17068 > select subtract #17
    17069 
    17070 241 atoms, 240 bonds, 15 residues, 1 model selected 
    17071 
    17072 > select subtract #16
    17073 
    17074 Nothing selected 
    17075 
    17076 > select add #18
    17077 
    17078 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    17079 
    17080 > select subtract #18
    17081 
    17082 Nothing selected 
    17083 
    17084 > select add #14
    17085 
    17086 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    17087 
    17088 > ui mousemode right "rotate selected models"
    17089 
    17090 > view matrix models
    17091 > #14,0.92276,0.29202,0.25145,-92.244,-0.34211,0.92112,0.18573,21.689,-0.17738,-0.25741,0.94988,98.906
    17092 
    17093 > ui mousemode right "translate selected models"
    17094 
    17095 > view matrix models
    17096 > #14,0.92276,0.29202,0.25145,-93.574,-0.34211,0.92112,0.18573,22.675,-0.17738,-0.25741,0.94988,98.771
    17097 
    17098 > ui mousemode right "rotate selected models"
    17099 
    17100 > view matrix models
    17101 > #14,0.9037,0.31564,0.2893,-101.95,-0.38476,0.89509,0.22531,28.817,-0.18783,-0.31492,0.93035,116.4
    17102 
    17103 > ui mousemode right "translate selected models"
    17104 
    17105 > view matrix models
    17106 > #14,0.9037,0.31564,0.2893,-102.15,-0.38476,0.89509,0.22531,29.227,-0.18783,-0.31492,0.93035,117.07
    17107 
    17108 > ui mousemode right "rotate selected models"
    17109 
    17110 > view matrix models
    17111 > #14,0.89961,0.32523,0.29142,-103.75,-0.39457,0.89132,0.2233,32.29,-0.18713,-0.31587,0.93017,117.16
    17112 
    17113 > view matrix models
    17114 > #14,0.89571,0.31842,0.31035,-105.17,-0.39731,0.88651,0.23714,31.19,-0.19962,-0.33571,0.92057,125.51
    17115 
    17116 > ui mousemode right "translate selected models"
    17117 
    17118 > view matrix models
    17119 > #14,0.89571,0.31842,0.31035,-105.47,-0.39731,0.88651,0.23714,30.743,-0.19962,-0.33571,0.92057,125.52
    17120 
    17121 > view matrix models
    17122 > #14,0.89571,0.31842,0.31035,-105.53,-0.39731,0.88651,0.23714,30.872,-0.19962,-0.33571,0.92057,125.97
    17123 
    17124 > view matrix models
    17125 > #14,0.89571,0.31842,0.31035,-105.29,-0.39731,0.88651,0.23714,30.712,-0.19962,-0.33571,0.92057,125.93
    17126 
    17127 > view matrix models
    17128 > #14,0.89571,0.31842,0.31035,-105.24,-0.39731,0.88651,0.23714,30.582,-0.19962,-0.33571,0.92057,125.72
    17129 
    17130 > select add #16
    17131 
    17132 502 atoms, 500 bonds, 1 pseudobond, 32 residues, 3 models selected 
    17133 
    17134 > select subtract #16
    17135 
    17136 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    17137 
    17138 > select add #13
    17139 
    17140 357 atoms, 355 bonds, 2 pseudobonds, 25 residues, 4 models selected 
    17141 
    17142 > select subtract #14
    17143 
    17144 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    17145 
    17146 > view matrix models
    17147 > #13,0.72714,0.68586,-0.029519,-94.684,-0.66467,0.69261,-0.28017,229.61,-0.17171,0.22334,0.9595,-10.915
    17148 
    17149 > view matrix models
    17150 > #13,0.72714,0.68586,-0.029519,-94.998,-0.66467,0.69261,-0.28017,229.91,-0.17171,0.22334,0.9595,-10.71
    17151 
    17152 > view matrix models
    17153 > #13,0.72714,0.68586,-0.029519,-94.393,-0.66467,0.69261,-0.28017,230.33,-0.17171,0.22334,0.9595,-10.995
    17154 
    17155 > view matrix models
    17156 > #13,0.72714,0.68586,-0.029519,-94.991,-0.66467,0.69261,-0.28017,230.07,-0.17171,0.22334,0.9595,-11.212
    17157 
    17158 > show #!75 models
    17159 
    17160 > hide #!75 models
    17161 
    17162 > show #!74 models
    17163 
    17164 > hide #!74 models
    17165 
    17166 > show #!78 models
    17167 
    17168 > hide #!78 models
    17169 
    17170 > close #75-78
    17171 
    17172 > combine #13-18,57
    17173 
    17174 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17175 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17176 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17177 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17178 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17179 to 'q' 
    17180 
    17181 > combine #13-18,57
    17182 
    17183 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17184 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17185 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17186 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17187 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17188 to 'q' 
    17189 
    17190 > combine #13-18,57
    17191 
    17192 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17193 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17194 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17195 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17196 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17197 to 'q' 
    17198 
    17199 > combine #13-18,57
    17200 
    17201 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17202 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17203 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17204 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17205 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17206 to 'q' 
    17207 
    17208 > mmaker #75/9 to #70/9 pairing ss
    17209 
    17210 Parameters 
    17211 --- 
    17212 Chain pairing | ss 
    17213 Alignment algorithm | Needleman-Wunsch 
    17214 Similarity matrix | BLOSUM-62 
    17215 SS fraction | 0.3 
    17216 Gap open (HH/SS/other) | 18/18/6 
    17217 Gap extend | 1 
    17218 SS matrix |  |  | H | S | O 
    17219 ---|---|---|--- 
    17220 H | 6 | -9 | -6 
    17221 S |  | 6 | -6 
    17222 O |  |  | 4 
    17223 Iteration cutoff | 2 
    17224  
    17225 Matchmaker combination, chain 9 (#70) with combination, chain 9 (#75),
    17226 sequence alignment score = 674.3 
    17227 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17228 0.000) 
    17229  
    17230 
    17231 > mmaker #76/9 to #71/9 pairing ss
    17232 
    17233 Parameters 
    17234 --- 
    17235 Chain pairing | ss 
    17236 Alignment algorithm | Needleman-Wunsch 
    17237 Similarity matrix | BLOSUM-62 
    17238 SS fraction | 0.3 
    17239 Gap open (HH/SS/other) | 18/18/6 
    17240 Gap extend | 1 
    17241 SS matrix |  |  | H | S | O 
    17242 ---|---|---|--- 
    17243 H | 6 | -9 | -6 
    17244 S |  | 6 | -6 
    17245 O |  |  | 4 
    17246 Iteration cutoff | 2 
    17247  
    17248 Matchmaker combination, chain 9 (#71) with combination, chain 9 (#76),
    17249 sequence alignment score = 674.3 
    17250 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17251 0.000) 
    17252  
    17253 
    17254 > mmaker #77/9 to #72/9 pairing ss
    17255 
    17256 Parameters 
    17257 --- 
    17258 Chain pairing | ss 
    17259 Alignment algorithm | Needleman-Wunsch 
    17260 Similarity matrix | BLOSUM-62 
    17261 SS fraction | 0.3 
    17262 Gap open (HH/SS/other) | 18/18/6 
    17263 Gap extend | 1 
    17264 SS matrix |  |  | H | S | O 
    17265 ---|---|---|--- 
    17266 H | 6 | -9 | -6 
    17267 S |  | 6 | -6 
    17268 O |  |  | 4 
    17269 Iteration cutoff | 2 
    17270  
    17271 Matchmaker combination, chain 9 (#72) with combination, chain 9 (#77),
    17272 sequence alignment score = 674.3 
    17273 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17274 0.000) 
    17275  
    17276 
    17277 > mmaker #78/9 to #74/9 pairing ss
    17278 
    17279 Parameters 
    17280 --- 
    17281 Chain pairing | ss 
    17282 Alignment algorithm | Needleman-Wunsch 
    17283 Similarity matrix | BLOSUM-62 
    17284 SS fraction | 0.3 
    17285 Gap open (HH/SS/other) | 18/18/6 
    17286 Gap extend | 1 
    17287 SS matrix |  |  | H | S | O 
    17288 ---|---|---|--- 
    17289 H | 6 | -9 | -6 
    17290 S |  | 6 | -6 
    17291 O |  |  | 4 
    17292 Iteration cutoff | 2 
    17293  
    17294 Matchmaker combination, chain 9 (#74) with combination, chain 9 (#78),
    17295 sequence alignment score = 674.3 
    17296 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17297 0.000) 
    17298  
    17299 
    17300 > color #75 #ffd479ff
    17301 
    17302 > color #76 #76d6ffff
    17303 
    17304 > color #77 #ff85ffff
    17305 
    17306 > color #78 #00fdffff
    17307 
    17308 > color #78 #ff2f92ff
    17309 
    17310 > select subtract #13
    17311 
    17312 Nothing selected 
    17313 
    17314 > select add #14
    17315 
    17316 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    17317 
    17318 > select subtract #14
    17319 
    17320 Nothing selected 
    17321 
    17322 > select add #15
    17323 
    17324 209 atoms, 208 bonds, 15 residues, 1 model selected 
    17325 
    17326 > select subtract #15
    17327 
    17328 Nothing selected 
    17329 
    17330 > select add #16
    17331 
    17332 241 atoms, 240 bonds, 15 residues, 1 model selected 
    17333 
    17334 > select subtract #16
    17335 
    17336 Nothing selected 
    17337 
    17338 > select add #16
    17339 
    17340 241 atoms, 240 bonds, 15 residues, 1 model selected 
    17341 
    17342 > ui mousemode right "rotate selected models"
    17343 
    17344 > view matrix models
    17345 > #16,0.92035,-0.062307,-0.3861,107.15,-0.0051429,0.98521,-0.17125,62.13,0.39106,0.15959,0.90642,-88.749
    17346 
    17347 > select add #15
    17348 
    17349 450 atoms, 448 bonds, 30 residues, 2 models selected 
    17350 
    17351 > view matrix models
    17352 > #15,0.93879,-0.021204,-0.34384,85.704,0.013532,0.9996,-0.024696,27.8,0.34423,0.018532,0.9387,-57.644,#16,0.91465,-0.010228,-0.40412,100.96,-0.027829,0.99572,-0.088186,47.935,0.40329,0.091906,0.91045,-77.811
    17353 
    17354 > ui mousemode right "translate selected models"
    17355 
    17356 > view matrix models
    17357 > #15,0.93879,-0.021204,-0.34384,85.944,0.013532,0.9996,-0.024696,27.863,0.34423,0.018532,0.9387,-57.991,#16,0.91465,-0.010228,-0.40412,101.2,-0.027829,0.99572,-0.088186,47.998,0.40329,0.091906,0.91045,-78.157
    17358 
    17359 > view matrix models
    17360 > #15,0.93879,-0.021204,-0.34384,86.118,0.013532,0.9996,-0.024696,27.959,0.34423,0.018532,0.9387,-58.068,#16,0.91465,-0.010228,-0.40412,101.37,-0.027829,0.99572,-0.088186,48.094,0.40329,0.091906,0.91045,-78.235
    17361 
    17362 > view matrix models
    17363 > #15,0.93879,-0.021204,-0.34384,86.222,0.013532,0.9996,-0.024696,28.061,0.34423,0.018532,0.9387,-58.378,#16,0.91465,-0.010228,-0.40412,101.48,-0.027829,0.99572,-0.088186,48.195,0.40329,0.091906,0.91045,-78.544
    17364 
    17365 > view matrix models
    17366 > #15,0.93879,-0.021204,-0.34384,86.575,0.013532,0.9996,-0.024696,28.168,0.34423,0.018532,0.9387,-58.273,#16,0.91465,-0.010228,-0.40412,101.83,-0.027829,0.99572,-0.088186,48.302,0.40329,0.091906,0.91045,-78.439
    17367 
    17368 > view matrix models
    17369 > #15,0.93879,-0.021204,-0.34384,86.478,0.013532,0.9996,-0.024696,28.24,0.34423,0.018532,0.9387,-58.407,#16,0.91465,-0.010228,-0.40412,101.73,-0.027829,0.99572,-0.088186,48.374,0.40329,0.091906,0.91045,-78.574
    17370 
    17371 > view matrix models
    17372 > #15,0.93879,-0.021204,-0.34384,86.534,0.013532,0.9996,-0.024696,28.275,0.34423,0.018532,0.9387,-58.394,#16,0.91465,-0.010228,-0.40412,101.79,-0.027829,0.99572,-0.088186,48.409,0.40329,0.091906,0.91045,-78.561
    17373 
    17374 > close #75-78
    17375 
    17376 > combine #13-18,57
    17377 
    17378 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17379 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17380 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17381 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17382 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17383 to 'q' 
    17384 
    17385 > combine #13-18,57
    17386 
    17387 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17388 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17389 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17390 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17391 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17392 to 'q' 
    17393 
    17394 > combine #13-18,57
    17395 
    17396 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17397 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17398 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17399 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17400 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17401 to 'q' 
    17402 
    17403 > combine #13-18,57
    17404 
    17405 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17406 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17407 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17408 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17409 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17410 to 'q' 
    17411 
    17412 > mmaker #75/9 to #70/9 pairing ss
    17413 
    17414 Parameters 
    17415 --- 
    17416 Chain pairing | ss 
    17417 Alignment algorithm | Needleman-Wunsch 
    17418 Similarity matrix | BLOSUM-62 
    17419 SS fraction | 0.3 
    17420 Gap open (HH/SS/other) | 18/18/6 
    17421 Gap extend | 1 
    17422 SS matrix |  |  | H | S | O 
    17423 ---|---|---|--- 
    17424 H | 6 | -9 | -6 
    17425 S |  | 6 | -6 
    17426 O |  |  | 4 
    17427 Iteration cutoff | 2 
    17428  
    17429 Matchmaker combination, chain 9 (#70) with combination, chain 9 (#75),
    17430 sequence alignment score = 674.3 
    17431 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17432 0.000) 
    17433  
    17434 
    17435 > mmaker #76/9 to #71/9 pairing ss
    17436 
    17437 Parameters 
    17438 --- 
    17439 Chain pairing | ss 
    17440 Alignment algorithm | Needleman-Wunsch 
    17441 Similarity matrix | BLOSUM-62 
    17442 SS fraction | 0.3 
    17443 Gap open (HH/SS/other) | 18/18/6 
    17444 Gap extend | 1 
    17445 SS matrix |  |  | H | S | O 
    17446 ---|---|---|--- 
    17447 H | 6 | -9 | -6 
    17448 S |  | 6 | -6 
    17449 O |  |  | 4 
    17450 Iteration cutoff | 2 
    17451  
    17452 Matchmaker combination, chain 9 (#71) with combination, chain 9 (#76),
    17453 sequence alignment score = 674.3 
    17454 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17455 0.000) 
    17456  
    17457 
    17458 > mmaker #77/9 to #72/9 pairing ss
    17459 
    17460 Parameters 
    17461 --- 
    17462 Chain pairing | ss 
    17463 Alignment algorithm | Needleman-Wunsch 
    17464 Similarity matrix | BLOSUM-62 
    17465 SS fraction | 0.3 
    17466 Gap open (HH/SS/other) | 18/18/6 
    17467 Gap extend | 1 
    17468 SS matrix |  |  | H | S | O 
    17469 ---|---|---|--- 
    17470 H | 6 | -9 | -6 
    17471 S |  | 6 | -6 
    17472 O |  |  | 4 
    17473 Iteration cutoff | 2 
    17474  
    17475 Matchmaker combination, chain 9 (#72) with combination, chain 9 (#77),
    17476 sequence alignment score = 674.3 
    17477 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17478 0.000) 
    17479  
    17480 
    17481 > mmaker #78/9 to #74/9 pairing ss
    17482 
    17483 Parameters 
    17484 --- 
    17485 Chain pairing | ss 
    17486 Alignment algorithm | Needleman-Wunsch 
    17487 Similarity matrix | BLOSUM-62 
    17488 SS fraction | 0.3 
    17489 Gap open (HH/SS/other) | 18/18/6 
    17490 Gap extend | 1 
    17491 SS matrix |  |  | H | S | O 
    17492 ---|---|---|--- 
    17493 H | 6 | -9 | -6 
    17494 S |  | 6 | -6 
    17495 O |  |  | 4 
    17496 Iteration cutoff | 2 
    17497  
    17498 Matchmaker combination, chain 9 (#74) with combination, chain 9 (#78),
    17499 sequence alignment score = 674.3 
    17500 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17501 0.000) 
    17502  
    17503 
    17504 > color #75 #fffc79ff
    17505 
    17506 > color #76 #73fcd6ff
    17507 
    17508 > color #77 #ff85ffff
    17509 
    17510 > color #78 #0096ffff
    17511 
    17512 > select add #77
    17513 
    17514 3041 atoms, 3034 bonds, 4 pseudobonds, 197 residues, 4 models selected 
    17515 
    17516 > ui mousemode right "rotate selected models"
    17517 
    17518 > view matrix models
    17519 > #15,0.94195,-0.014904,-0.33543,83.252,0.012659,0.99988,-0.0088774,25.178,0.33553,0.0041157,0.94202,-55.196,#16,0.91809,-0.0032846,-0.39635,98.447,-0.027686,0.99699,-0.072393,44.921,0.3954,0.077437,0.91524,-75.791,#77,0.69225,0.71976,-0.052316,-92.829,-0.70278,0.6559,-0.27551,194.3,-0.16399,0.22749,0.95987,-10.746
    17520 
    17521 > view matrix models
    17522 > #15,0.90469,0.032148,-0.42486,101.92,0.021286,0.99249,0.12043,-2.0058,0.42554,-0.11799,0.89722,-45.31,#16,0.87328,0.036485,-0.48584,119.95,-0.010418,0.99836,0.056247,14.469,0.4871,-0.044059,0.87223,-66.484,#77,0.67078,0.72469,-0.15773,-69.421,-0.74162,0.65344,-0.15168,177.42,-0.006852,0.21872,0.97576,-39.702
    17523 
    17524 > undo
    17525 
    17526 [Repeated 1 time(s)]
    17527 
    17528 > select subtract #16
    17529 
    17530 2800 atoms, 2794 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    17531 
    17532 > select subtract #15
    17533 
    17534 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    17535 
    17536 > view matrix models
    17537 > #77,0.68081,0.70397,-0.20231,-56.432,-0.73131,0.66877,-0.1339,168.25,0.041037,0.23911,0.97012,-56.002
    17538 
    17539 > view matrix models
    17540 > #77,0.64426,0.73439,-0.21355,-53.979,-0.76348,0.63402,-0.12298,180.32,0.04508,0.24228,0.96916,-57.324
    17541 
    17542 > ui mousemode right "translate selected models"
    17543 
    17544 > view matrix models
    17545 > #77,0.64426,0.73439,-0.21355,-56.401,-0.76348,0.63402,-0.12298,180.52,0.04508,0.24228,0.96916,-57.304
    17546 
    17547 > ui mousemode right "rotate selected models"
    17548 
    17549 > view matrix models
    17550 > #77,0.67901,0.70573,-0.20223,-58.922,-0.73306,0.63693,-0.23861,197.32,-0.039589,0.31027,0.94982,-52.413
    17551 
    17552 > view matrix models
    17553 > #77,0.68087,0.72591,-0.09727,-85.179,-0.725,0.6492,-0.23002,191.18,-0.10383,0.22714,0.96831,-24.496
    17554 
    17555 > ui mousemode right "translate selected models"
    17556 
    17557 > view matrix models
    17558 > #77,0.68087,0.72591,-0.09727,-83.282,-0.725,0.6492,-0.23002,191.3,-0.10383,0.22714,0.96831,-26.342
    17559 
    17560 > view matrix models
    17561 > #77,0.68087,0.72591,-0.09727,-84.76,-0.725,0.6492,-0.23002,192.31,-0.10383,0.22714,0.96831,-26.371
    17562 
    17563 > select add #76
    17564 
    17565 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    17566 
    17567 > select subtract #77
    17568 
    17569 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    17570 
    17571 > view matrix models
    17572 > #76,0.74084,0.668,-0.070293,-83.685,-0.65839,0.70147,-0.2729,249.29,-0.13299,0.24845,0.95947,-24.514
    17573 
    17574 > ui mousemode right "rotate selected models"
    17575 
    17576 > view matrix models
    17577 > #76,0.76995,0.63516,-0.061148,-83.704,-0.60914,0.70308,-0.36691,258.32,-0.19006,0.31975,0.92824,-23.378
    17578 
    17579 > select add #75
    17580 
    17581 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    17582 
    17583 > select subtract #76
    17584 
    17585 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    17586 
    17587 > view matrix models
    17588 > #75,0.70976,0.70287,-0.046979,-92.866,-0.686,0.67449,-0.2729,212.71,-0.16013,0.22592,0.96089,-14.072
    17589 
    17590 > view matrix models
    17591 > #75,0.71623,0.69641,-0.045142,-93.02,-0.67608,0.67637,-0.29231,214.27,-0.17304,0.23988,0.95526,-13.606
    17592 
    17593 > select add #77
    17594 
    17595 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    17596 
    17597 > select subtract #75
    17598 
    17599 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    17600 
    17601 > view matrix models
    17602 > #77,0.69347,0.71531,-0.08625,-87.024,-0.69965,0.63999,-0.31765,207.21,-0.17202,0.28063,0.94428,-20.426
    17603 
    17604 > view matrix models
    17605 > #77,0.68134,0.73158,-0.024023,-100.99,-0.69692,0.63832,-0.32688,208.92,-0.2238,0.23946,0.94476,-0.93372
    17606 
    17607 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    17608 > MRCLaboratoryofMolecularBiology/Documents/Carter
    17609 > Lab/Diorge/Membranes/Fit14-17.cxs"
    17610 
    17611 > select subtract #77
    17612 
    17613 Nothing selected 
    17614 
    17615 > select add #16
    17616 
    17617 241 atoms, 240 bonds, 15 residues, 1 model selected 
    17618 
    17619 > select subtract #16
    17620 
    17621 Nothing selected 
    17622 
    17623 > select add #15
    17624 
    17625 209 atoms, 208 bonds, 15 residues, 1 model selected 
    17626 
    17627 > select subtract #15
    17628 
    17629 Nothing selected 
    17630 
    17631 > select add #14
    17632 
    17633 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    17634 
    17635 > view matrix models
    17636 > #14,0.91746,0.26143,0.29987,-95.685,-0.29679,0.95173,0.078302,27.744,-0.26493,-0.16084,0.95076,96.485
    17637 
    17638 > ui mousemode right "translate selected models"
    17639 
    17640 > view matrix models
    17641 > #14,0.91746,0.26143,0.29987,-94.481,-0.29679,0.95173,0.078302,27.065,-0.26493,-0.16084,0.95076,94.627
    17642 
    17643 > view matrix models
    17644 > #14,0.91746,0.26143,0.29987,-94.981,-0.29679,0.95173,0.078302,27.329,-0.26493,-0.16084,0.95076,94.457
    17645 
    17646 > view matrix models
    17647 > #14,0.91746,0.26143,0.29987,-95.157,-0.29679,0.95173,0.078302,27.052,-0.26493,-0.16084,0.95076,94.416
    17648 
    17649 > view matrix models
    17650 > #14,0.91746,0.26143,0.29987,-94.951,-0.29679,0.95173,0.078302,27.433,-0.26493,-0.16084,0.95076,94.395
    17651 
    17652 > view matrix models
    17653 > #14,0.91746,0.26143,0.29987,-95.035,-0.29679,0.95173,0.078302,27.345,-0.26493,-0.16084,0.95076,94.681
    17654 
    17655 > view matrix models
    17656 > #14,0.91746,0.26143,0.29987,-95.032,-0.29679,0.95173,0.078302,27.31,-0.26493,-0.16084,0.95076,94.638
    17657 
    17658 > select subtract #14
    17659 
    17660 Nothing selected 
    17661 
    17662 > close #75-78
    17663 
    17664 > combine #13-18,57
    17665 
    17666 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17667 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17668 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17669 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17670 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17671 to 'q' 
    17672 
    17673 > combine #13-18,57
    17674 
    17675 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17676 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17677 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17678 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17679 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17680 to 'q' 
    17681 
    17682 > combine #13-18,57
    17683 
    17684 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17685 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17686 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17687 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17688 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17689 to 'q' 
    17690 
    17691 > combine #13-18,57
    17692 
    17693 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17694 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17695 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17696 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17697 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17698 to 'q' 
    17699 
    17700 > mmaker #75/9 to #70/9 pairing ss
    17701 
    17702 Parameters 
    17703 --- 
    17704 Chain pairing | ss 
    17705 Alignment algorithm | Needleman-Wunsch 
    17706 Similarity matrix | BLOSUM-62 
    17707 SS fraction | 0.3 
    17708 Gap open (HH/SS/other) | 18/18/6 
    17709 Gap extend | 1 
    17710 SS matrix |  |  | H | S | O 
    17711 ---|---|---|--- 
    17712 H | 6 | -9 | -6 
    17713 S |  | 6 | -6 
    17714 O |  |  | 4 
    17715 Iteration cutoff | 2 
    17716  
    17717 Matchmaker combination, chain 9 (#70) with combination, chain 9 (#75),
    17718 sequence alignment score = 674.3 
    17719 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17720 0.000) 
    17721  
    17722 
    17723 > mmaker #76/9 to #71/9 pairing ss
    17724 
    17725 Parameters 
    17726 --- 
    17727 Chain pairing | ss 
    17728 Alignment algorithm | Needleman-Wunsch 
    17729 Similarity matrix | BLOSUM-62 
    17730 SS fraction | 0.3 
    17731 Gap open (HH/SS/other) | 18/18/6 
    17732 Gap extend | 1 
    17733 SS matrix |  |  | H | S | O 
    17734 ---|---|---|--- 
    17735 H | 6 | -9 | -6 
    17736 S |  | 6 | -6 
    17737 O |  |  | 4 
    17738 Iteration cutoff | 2 
    17739  
    17740 Matchmaker combination, chain 9 (#71) with combination, chain 9 (#76),
    17741 sequence alignment score = 674.3 
    17742 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17743 0.000) 
    17744  
    17745 
    17746 > mmaker #77/9 to #72/9 pairing ss
    17747 
    17748 Parameters 
    17749 --- 
    17750 Chain pairing | ss 
    17751 Alignment algorithm | Needleman-Wunsch 
    17752 Similarity matrix | BLOSUM-62 
    17753 SS fraction | 0.3 
    17754 Gap open (HH/SS/other) | 18/18/6 
    17755 Gap extend | 1 
    17756 SS matrix |  |  | H | S | O 
    17757 ---|---|---|--- 
    17758 H | 6 | -9 | -6 
    17759 S |  | 6 | -6 
    17760 O |  |  | 4 
    17761 Iteration cutoff | 2 
    17762  
    17763 Matchmaker combination, chain 9 (#72) with combination, chain 9 (#77),
    17764 sequence alignment score = 674.3 
    17765 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17766 0.000) 
    17767  
    17768 
    17769 > mmaker #78/9 to #74/9 pairing ss
    17770 
    17771 Parameters 
    17772 --- 
    17773 Chain pairing | ss 
    17774 Alignment algorithm | Needleman-Wunsch 
    17775 Similarity matrix | BLOSUM-62 
    17776 SS fraction | 0.3 
    17777 Gap open (HH/SS/other) | 18/18/6 
    17778 Gap extend | 1 
    17779 SS matrix |  |  | H | S | O 
    17780 ---|---|---|--- 
    17781 H | 6 | -9 | -6 
    17782 S |  | 6 | -6 
    17783 O |  |  | 4 
    17784 Iteration cutoff | 2 
    17785  
    17786 Matchmaker combination, chain 9 (#74) with combination, chain 9 (#78),
    17787 sequence alignment score = 674.3 
    17788 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    17789 0.000) 
    17790  
    17791 
    17792 > color #75 #ffd479ff
    17793 
    17794 > color #75 #73fcd6ff
    17795 
    17796 > color #76 #fffc79ff
    17797 
    17798 > color #77 #76d6ffff
    17799 
    17800 > color #77 #ff8ad8ff
    17801 
    17802 > color #78 #0433ffff
    17803 
    17804 > color #78 #212121ff
    17805 
    17806 > color #78 #9437ffff
    17807 
    17808 > select add #77
    17809 
    17810 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    17811 
    17812 > select subtract #77
    17813 
    17814 Nothing selected 
    17815 
    17816 > select add #78
    17817 
    17818 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    17819 
    17820 > view matrix models
    17821 > #78,0.77665,0.61015,-0.15665,-59.388,-0.61419,0.67818,-0.40355,295.8,-0.13999,0.40963,0.90145,-48.542
    17822 
    17823 > undo
    17824 
    17825 > ui mousemode right "rotate selected models"
    17826 
    17827 > view matrix models
    17828 > #78,0.66291,0.72659,-0.18058,-59.12,-0.74095,0.60207,-0.2975,316.65,-0.10744,0.33102,0.93749,-44.142
    17829 
    17830 > view matrix models
    17831 > #78,0.73168,0.65696,-0.18177,-56.395,-0.67881,0.67792,-0.28221,284,-0.062171,0.32987,0.94198,-53.653
    17832 
    17833 > ui mousemode right "translate selected models"
    17834 
    17835 > view matrix models
    17836 > #78,0.73168,0.65696,-0.18177,-55.96,-0.67881,0.67792,-0.28221,285.28,-0.062171,0.32987,0.94198,-53.64
    17837 
    17838 > view matrix models
    17839 > #78,0.73168,0.65696,-0.18177,-56.279,-0.67881,0.67792,-0.28221,285.38,-0.062171,0.32987,0.94198,-54.341
    17840 
    17841 > ui mousemode right "rotate selected models"
    17842 
    17843 > view matrix models
    17844 > #78,0.72671,0.67855,-0.10708,-75.378,-0.67443,0.67514,-0.29889,288.54,-0.13051,0.28942,0.94826,-32.963
    17845 
    17846 > select subtract #78
    17847 
    17848 Nothing selected 
    17849 
    17850 > select add #77
    17851 
    17852 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    17853 
    17854 > ui mousemode right "translate selected models"
    17855 
    17856 > view matrix models
    17857 > #77,0.69809,0.71355,-0.059234,-91.354,-0.69605,0.6569,-0.28982,195.64,-0.16789,0.24355,0.95525,-14.098
    17858 
    17859 > view matrix models
    17860 > #77,0.69809,0.71355,-0.059234,-91.888,-0.69605,0.6569,-0.28982,195.59,-0.16789,0.24355,0.95525,-14.178
    17861 
    17862 > ui mousemode right "rotate selected models"
    17863 
    17864 > view matrix models
    17865 > #77,0.70261,0.70896,-0.060905,-91.383,-0.68785,0.65478,-0.31323,199.22,-0.18219,0.26198,0.94772,-14.074
    17866 
    17867 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    17868 > MRCLaboratoryofMolecularBiology/Documents/Carter
    17869 > Lab/Diorge/Membranes/Fit14-17.cxs"
    17870 
    17871 > select add #15
    17872 
    17873 2800 atoms, 2794 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    17874 
    17875 > select add #16
    17876 
    17877 3041 atoms, 3034 bonds, 4 pseudobonds, 197 residues, 4 models selected 
    17878 
    17879 > view sel
    17880 
    17881 > select subtract #77
    17882 
    17883 450 atoms, 448 bonds, 30 residues, 2 models selected 
    17884 
    17885 > view sel
    17886 
    17887 > ui mousemode right "move picked models"
    17888 
    17889 > ui mousemode right "rotate selected models"
    17890 
    17891 > view matrix models
    17892 > #15,0.94067,-0.036096,-0.33739,87.981,0.0054805,0.99581,-0.091257,43.723,0.33927,0.083994,0.93693,-70.629,#16,0.91754,-0.024591,-0.39689,102.8,-0.040017,0.98731,-0.15369,65.364,0.39563,0.1569,0.90491,-89.518
    17893 
    17894 > ui mousemode right "translate selected models"
    17895 
    17896 > view matrix models
    17897 > #15,0.94067,-0.036096,-0.33739,87.98,0.0054805,0.99581,-0.091257,43.751,0.33927,0.083994,0.93693,-70.461,#16,0.91754,-0.024591,-0.39689,102.8,-0.040017,0.98731,-0.15369,65.393,0.39563,0.1569,0.90491,-89.349
    17898 
    17899 > view matrix models
    17900 > #15,0.94067,-0.036096,-0.33739,87.935,0.0054805,0.99581,-0.091257,43.833,0.33927,0.083994,0.93693,-70.474,#16,0.91754,-0.024591,-0.39689,102.76,-0.040017,0.98731,-0.15369,65.474,0.39563,0.1569,0.90491,-89.363
    17901 
    17902 > select subtract #16
    17903 
    17904 209 atoms, 208 bonds, 15 residues, 1 model selected 
    17905 
    17906 > ui mousemode right "rotate selected models"
    17907 
    17908 > view matrix models
    17909 > #15,0.94086,-0.058237,-0.33375,91.52,0.026539,0.99476,-0.098762,41.46,0.33776,0.084064,0.93747,-70.302
    17910 
    17911 > select add #14
    17912 
    17913 470 atoms, 468 bonds, 1 pseudobond, 32 residues, 3 models selected 
    17914 
    17915 > select subtract #14
    17916 
    17917 209 atoms, 208 bonds, 15 residues, 1 model selected 
    17918 
    17919 > select add #16
    17920 
    17921 450 atoms, 448 bonds, 30 residues, 2 models selected 
    17922 
    17923 > ui mousemode right "translate selected models"
    17924 
    17925 > view matrix models
    17926 > #15,0.94086,-0.058237,-0.33375,91.616,0.026539,0.99476,-0.098762,41.198,0.33776,0.084064,0.93747,-70.208,#16,0.91754,-0.024591,-0.39689,102.85,-0.040017,0.98731,-0.15369,65.213,0.39563,0.1569,0.90491,-89.269
    17927 
    17928 > undo
    17929 
    17930 > select subtract #16
    17931 
    17932 209 atoms, 208 bonds, 15 residues, 1 model selected 
    17933 
    17934 > view matrix models
    17935 > #15,0.94086,-0.058237,-0.33375,91.613,0.026539,0.99476,-0.098762,41.264,0.33776,0.084064,0.93747,-70.23
    17936 
    17937 > select add #14
    17938 
    17939 470 atoms, 468 bonds, 1 pseudobond, 32 residues, 3 models selected 
    17940 
    17941 > select subtract #14
    17942 
    17943 209 atoms, 208 bonds, 15 residues, 1 model selected 
    17944 
    17945 > select add #16
    17946 
    17947 450 atoms, 448 bonds, 30 residues, 2 models selected 
    17948 
    17949 > ui mousemode right "translate selected models"
    17950 
    17951 > view matrix models
    17952 > #15,0.94086,-0.058237,-0.33375,91.482,0.026539,0.99476,-0.098762,41.422,0.33776,0.084064,0.93747,-70.078,#16,0.91754,-0.024591,-0.39689,102.62,-0.040017,0.98731,-0.15369,65.632,0.39563,0.1569,0.90491,-89.211
    17953 
    17954 > view matrix models
    17955 > #15,0.94086,-0.058237,-0.33375,91.572,0.026539,0.99476,-0.098762,41.244,0.33776,0.084064,0.93747,-70.008,#16,0.91754,-0.024591,-0.39689,102.71,-0.040017,0.98731,-0.15369,65.454,0.39563,0.1569,0.90491,-89.141
    17956 
    17957 > select clear
    17958 
    17959 > combine #13-18,57
    17960 
    17961 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17962 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17963 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17964 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17965 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17966 to 'q' 
    17967 
    17968 > combine #13-18,57
    17969 
    17970 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17971 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17972 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17973 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17974 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17975 to 'q' 
    17976 
    17977 > combine #13-18,57
    17978 
    17979 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17980 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17981 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17982 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17983 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17984 to 'q' 
    17985 
    17986 > combine #13-18,57
    17987 
    17988 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    17989 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    17990 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    17991 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    17992 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    17993 to 'q' 
    17994 
    17995 > mmaker #79/9 to #75/9 pairing ss
    17996 
    17997 Parameters 
    17998 --- 
    17999 Chain pairing | ss 
    18000 Alignment algorithm | Needleman-Wunsch 
    18001 Similarity matrix | BLOSUM-62 
    18002 SS fraction | 0.3 
    18003 Gap open (HH/SS/other) | 18/18/6 
    18004 Gap extend | 1 
    18005 SS matrix |  |  | H | S | O 
    18006 ---|---|---|--- 
    18007 H | 6 | -9 | -6 
    18008 S |  | 6 | -6 
    18009 O |  |  | 4 
    18010 Iteration cutoff | 2 
    18011  
    18012 Matchmaker combination, chain 9 (#75) with combination, chain 9 (#79),
    18013 sequence alignment score = 674.3 
    18014 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18015 0.000) 
    18016  
    18017 
    18018 > mmaker #80/9 to #76/9 pairing ss
    18019 
    18020 Parameters 
    18021 --- 
    18022 Chain pairing | ss 
    18023 Alignment algorithm | Needleman-Wunsch 
    18024 Similarity matrix | BLOSUM-62 
    18025 SS fraction | 0.3 
    18026 Gap open (HH/SS/other) | 18/18/6 
    18027 Gap extend | 1 
    18028 SS matrix |  |  | H | S | O 
    18029 ---|---|---|--- 
    18030 H | 6 | -9 | -6 
    18031 S |  | 6 | -6 
    18032 O |  |  | 4 
    18033 Iteration cutoff | 2 
    18034  
    18035 Matchmaker combination, chain 9 (#76) with combination, chain 9 (#80),
    18036 sequence alignment score = 674.3 
    18037 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18038 0.000) 
    18039  
    18040 
    18041 > mmaker #81/9 to #77/9 pairing ss
    18042 
    18043 Parameters 
    18044 --- 
    18045 Chain pairing | ss 
    18046 Alignment algorithm | Needleman-Wunsch 
    18047 Similarity matrix | BLOSUM-62 
    18048 SS fraction | 0.3 
    18049 Gap open (HH/SS/other) | 18/18/6 
    18050 Gap extend | 1 
    18051 SS matrix |  |  | H | S | O 
    18052 ---|---|---|--- 
    18053 H | 6 | -9 | -6 
    18054 S |  | 6 | -6 
    18055 O |  |  | 4 
    18056 Iteration cutoff | 2 
    18057  
    18058 Matchmaker combination, chain 9 (#77) with combination, chain 9 (#81),
    18059 sequence alignment score = 674.3 
    18060 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18061 0.000) 
    18062  
    18063 
    18064 > mmaker #82/9 to #78/9 pairing ss
    18065 
    18066 Parameters 
    18067 --- 
    18068 Chain pairing | ss 
    18069 Alignment algorithm | Needleman-Wunsch 
    18070 Similarity matrix | BLOSUM-62 
    18071 SS fraction | 0.3 
    18072 Gap open (HH/SS/other) | 18/18/6 
    18073 Gap extend | 1 
    18074 SS matrix |  |  | H | S | O 
    18075 ---|---|---|--- 
    18076 H | 6 | -9 | -6 
    18077 S |  | 6 | -6 
    18078 O |  |  | 4 
    18079 Iteration cutoff | 2 
    18080  
    18081 Matchmaker combination, chain 9 (#78) with combination, chain 9 (#82),
    18082 sequence alignment score = 674.3 
    18083 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18084 0.000) 
    18085  
    18086 
    18087 > hide #!74-78 target m
    18088 
    18089 > hide #!79 models
    18090 
    18091 > show #!79 models
    18092 
    18093 > color #79 #fffc79ff
    18094 
    18095 > color #80 #73fdffff
    18096 
    18097 > color #80 #ff85ffff
    18098 
    18099 > color #81 #73fdffff
    18100 
    18101 > color #82 #ff40ffff
    18102 
    18103 > color #82 #0096ffff
    18104 
    18105 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    18106 > MRCLaboratoryofMolecularBiology/Documents/Carter
    18107 > Lab/Diorge/Membranes/Fit14-17.cxs"
    18108 
    18109 > show #!9 models
    18110 
    18111 > hide #!9 models
    18112 
    18113 > show #!9 models
    18114 
    18115 > hide #!8 models
    18116 
    18117 > hide #!9 models
    18118 
    18119 > select add #18
    18120 
    18121 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    18122 
    18123 > select subtract #18
    18124 
    18125 Nothing selected 
    18126 
    18127 > select add #17
    18128 
    18129 257 atoms, 259 bonds, 15 residues, 1 model selected 
    18130 
    18131 > select subtract #17
    18132 
    18133 Nothing selected 
    18134 
    18135 > select add #16
    18136 
    18137 241 atoms, 240 bonds, 15 residues, 1 model selected 
    18138 
    18139 > select subtract #16
    18140 
    18141 Nothing selected 
    18142 
    18143 > select add #15
    18144 
    18145 209 atoms, 208 bonds, 15 residues, 1 model selected 
    18146 
    18147 > select subtract #15
    18148 
    18149 Nothing selected 
    18150 
    18151 > select add #14
    18152 
    18153 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    18154 
    18155 > select subtract #14
    18156 
    18157 Nothing selected 
    18158 
    18159 > select add #13
    18160 
    18161 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    18162 
    18163 > ui mousemode right "rotate selected models"
    18164 
    18165 > show #!8 models
    18166 
    18167 > view matrix models
    18168 > #13,0.97528,0.21916,0.028197,-43.358,-0.21548,0.97156,-0.098212,37.587,-0.048919,0.089708,0.99477,-10.423
    18169 
    18170 > view matrix models
    18171 > #13,0.94795,0.31651,0.034769,-62.635,-0.31108,0.94388,-0.111,65.871,-0.067949,0.094403,0.99321,-7.4456
    18172 
    18173 > show #!9 models
    18174 
    18175 > hide #!9 models
    18176 
    18177 > show #!9 models
    18178 
    18179 > hide #!9 models
    18180 
    18181 > select add #14
    18182 
    18183 357 atoms, 355 bonds, 2 pseudobonds, 25 residues, 4 models selected 
    18184 
    18185 > select subtract #13
    18186 
    18187 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    18188 
    18189 > view matrix models
    18190 > #14,0.92116,0.259,0.29048,-93.465,-0.28985,0.95465,0.067974,27.32,-0.2597,-0.14681,0.95447,90.019
    18191 
    18192 > view matrix models
    18193 > #14,0.93877,0.24441,0.24283,-84.818,-0.25536,0.96674,0.014204,28.337,-0.23128,-0.075344,0.96997,66.783
    18194 
    18195 > ui mousemode right "translate selected models"
    18196 
    18197 > view matrix models
    18198 > #14,0.93877,0.24441,0.24283,-84.697,-0.25536,0.96674,0.014204,27.975,-0.23128,-0.075344,0.96997,66.035
    18199 
    18200 > view matrix models
    18201 > #14,0.93877,0.24441,0.24283,-84.667,-0.25536,0.96674,0.014204,28.485,-0.23128,-0.075344,0.96997,65.903
    18202 
    18203 > view matrix models
    18204 > #14,0.93877,0.24441,0.24283,-84.489,-0.25536,0.96674,0.014204,28.385,-0.23128,-0.075344,0.96997,65.899
    18205 
    18206 > select add #15
    18207 
    18208 470 atoms, 468 bonds, 1 pseudobond, 32 residues, 3 models selected 
    18209 
    18210 > select subtract #14
    18211 
    18212 209 atoms, 208 bonds, 15 residues, 1 model selected 
    18213 
    18214 > select subtract #15
    18215 
    18216 Nothing selected 
    18217 
    18218 > select add #17
    18219 
    18220 257 atoms, 259 bonds, 15 residues, 1 model selected 
    18221 
    18222 > select subtract #17
    18223 
    18224 Nothing selected 
    18225 
    18226 > select add #18
    18227 
    18228 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    18229 
    18230 > select subtract #18
    18231 
    18232 Nothing selected 
    18233 
    18234 > select add #13
    18235 
    18236 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    18237 
    18238 > select subtract #13
    18239 
    18240 Nothing selected 
    18241 
    18242 > select add #14
    18243 
    18244 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    18245 
    18246 > select subtract #14
    18247 
    18248 Nothing selected 
    18249 
    18250 > select add #15
    18251 
    18252 209 atoms, 208 bonds, 15 residues, 1 model selected 
    18253 
    18254 > select subtract #15
    18255 
    18256 Nothing selected 
    18257 
    18258 > select add #16
    18259 
    18260 241 atoms, 240 bonds, 15 residues, 1 model selected 
    18261 
    18262 > ui mousemode right "rotate selected models"
    18263 
    18264 > view matrix models
    18265 > #16,0.91914,-0.053509,-0.39028,107.4,0.012797,0.99426,-0.10618,44.83,0.39373,0.0926,0.91455,-76.713
    18266 
    18267 > ui mousemode right "translate selected models"
    18268 
    18269 > view matrix models
    18270 > #16,0.91914,-0.053509,-0.39028,107.06,0.012797,0.99426,-0.10618,44.802,0.39373,0.0926,0.91455,-76.699
    18271 
    18272 > view matrix models
    18273 > #16,0.91914,-0.053509,-0.39028,106.97,0.012797,0.99426,-0.10618,44.668,0.39373,0.0926,0.91455,-77.001
    18274 
    18275 > view matrix models
    18276 > #16,0.91914,-0.053509,-0.39028,107.12,0.012797,0.99426,-0.10618,44.624,0.39373,0.0926,0.91455,-77.031
    18277 
    18278 > combine #13-18,57
    18279 
    18280 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18281 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18282 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18283 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18284 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18285 to 'q' 
    18286 
    18287 > hide #!79-82 target m
    18288 
    18289 > combine #13-18,57
    18290 
    18291 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18292 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18293 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18294 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18295 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18296 to 'q' 
    18297 
    18298 > combine #13-18,57
    18299 
    18300 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18301 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18302 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18303 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18304 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18305 to 'q' 
    18306 
    18307 > combine #13-18,57
    18308 
    18309 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18310 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18311 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18312 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18313 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18314 to 'q' 
    18315 
    18316 > mmaker #83/9 to #79/9 pairing ss
    18317 
    18318 Parameters 
    18319 --- 
    18320 Chain pairing | ss 
    18321 Alignment algorithm | Needleman-Wunsch 
    18322 Similarity matrix | BLOSUM-62 
    18323 SS fraction | 0.3 
    18324 Gap open (HH/SS/other) | 18/18/6 
    18325 Gap extend | 1 
    18326 SS matrix |  |  | H | S | O 
    18327 ---|---|---|--- 
    18328 H | 6 | -9 | -6 
    18329 S |  | 6 | -6 
    18330 O |  |  | 4 
    18331 Iteration cutoff | 2 
    18332  
    18333 Matchmaker combination, chain 9 (#79) with combination, chain 9 (#83),
    18334 sequence alignment score = 674.3 
    18335 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18336 0.000) 
    18337  
    18338 
    18339 > mmaker #84/9 to #80/9 pairing ss
    18340 
    18341 Parameters 
    18342 --- 
    18343 Chain pairing | ss 
    18344 Alignment algorithm | Needleman-Wunsch 
    18345 Similarity matrix | BLOSUM-62 
    18346 SS fraction | 0.3 
    18347 Gap open (HH/SS/other) | 18/18/6 
    18348 Gap extend | 1 
    18349 SS matrix |  |  | H | S | O 
    18350 ---|---|---|--- 
    18351 H | 6 | -9 | -6 
    18352 S |  | 6 | -6 
    18353 O |  |  | 4 
    18354 Iteration cutoff | 2 
    18355  
    18356 Matchmaker combination, chain 9 (#80) with combination, chain 9 (#84),
    18357 sequence alignment score = 674.3 
    18358 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18359 0.000) 
    18360  
    18361 
    18362 > mmaker #85/9 to #81/9 pairing ss
    18363 
    18364 Parameters 
    18365 --- 
    18366 Chain pairing | ss 
    18367 Alignment algorithm | Needleman-Wunsch 
    18368 Similarity matrix | BLOSUM-62 
    18369 SS fraction | 0.3 
    18370 Gap open (HH/SS/other) | 18/18/6 
    18371 Gap extend | 1 
    18372 SS matrix |  |  | H | S | O 
    18373 ---|---|---|--- 
    18374 H | 6 | -9 | -6 
    18375 S |  | 6 | -6 
    18376 O |  |  | 4 
    18377 Iteration cutoff | 2 
    18378  
    18379 Matchmaker combination, chain 9 (#81) with combination, chain 9 (#85),
    18380 sequence alignment score = 674.3 
    18381 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18382 0.000) 
    18383  
    18384 
    18385 > mmaker #86/9 to #82/9 pairing ss
    18386 
    18387 Parameters 
    18388 --- 
    18389 Chain pairing | ss 
    18390 Alignment algorithm | Needleman-Wunsch 
    18391 Similarity matrix | BLOSUM-62 
    18392 SS fraction | 0.3 
    18393 Gap open (HH/SS/other) | 18/18/6 
    18394 Gap extend | 1 
    18395 SS matrix |  |  | H | S | O 
    18396 ---|---|---|--- 
    18397 H | 6 | -9 | -6 
    18398 S |  | 6 | -6 
    18399 O |  |  | 4 
    18400 Iteration cutoff | 2 
    18401  
    18402 Matchmaker combination, chain 9 (#82) with combination, chain 9 (#86),
    18403 sequence alignment score = 674.3 
    18404 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18405 0.000) 
    18406  
    18407 
    18408 > color #83 #fffc79ff
    18409 
    18410 > color #84 #d4fb79ff
    18411 
    18412 > color #84 #73fcd6ff
    18413 
    18414 > color #85 #7a81ffff
    18415 
    18416 > color #86 #ff85ffff
    18417 
    18418 > select add #83
    18419 
    18420 2832 atoms, 2826 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    18421 
    18422 > select subtract #16
    18423 
    18424 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    18425 
    18426 > view matrix models
    18427 > #83,0.93343,0.35874,0.0035085,-64.237,-0.35405,0.92273,-0.15237,61.994,-0.057899,0.14099,0.98832,-18.755
    18428 
    18429 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    18430 > MRCLaboratoryofMolecularBiology/Documents/Carter
    18431 > Lab/Diorge/Membranes/Fit14-18.cxs"
    18432 
    18433 > select add #15
    18434 
    18435 2800 atoms, 2794 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    18436 
    18437 > select subtract #15
    18438 
    18439 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    18440 
    18441 > select add #16
    18442 
    18443 2832 atoms, 2826 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    18444 
    18445 > view matrix models
    18446 > #16,0.91914,-0.053509,-0.39028,107.11,0.012797,0.99426,-0.10618,44.602,0.39373,0.0926,0.91455,-77.046,#83,0.93343,0.35874,0.0035085,-64.25,-0.35405,0.92273,-0.15237,61.972,-0.057899,0.14099,0.98832,-18.77
    18447 
    18448 > undo
    18449 
    18450 > select subtract #83
    18451 
    18452 241 atoms, 240 bonds, 15 residues, 1 model selected 
    18453 
    18454 > view matrix models
    18455 > #16,0.91914,-0.053509,-0.39028,106.61,0.012797,0.99426,-0.10618,44.678,0.39373,0.0926,0.91455,-77.629
    18456 
    18457 > view matrix models
    18458 > #16,0.91914,-0.053509,-0.39028,106.66,0.012797,0.99426,-0.10618,44.497,0.39373,0.0926,0.91455,-77.56
    18459 
    18460 > view matrix models
    18461 > #16,0.91914,-0.053509,-0.39028,106.78,0.012797,0.99426,-0.10618,44.474,0.39373,0.0926,0.91455,-77.592
    18462 
    18463 > close #83-86
    18464 
    18465 > combine #13-18,57
    18466 
    18467 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18468 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18469 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18470 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18471 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18472 to 'q' 
    18473 
    18474 > combine #13-18,57
    18475 
    18476 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18477 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18478 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18479 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18480 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18481 to 'q' 
    18482 
    18483 > combine #13-18,57
    18484 
    18485 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18486 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18487 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18488 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18489 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18490 to 'q' 
    18491 
    18492 > combine #13-18,57
    18493 
    18494 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18495 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18496 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18497 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18498 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18499 to 'q' 
    18500 
    18501 > mmaker #83/9 to #79/9 pairing ss
    18502 
    18503 Parameters 
    18504 --- 
    18505 Chain pairing | ss 
    18506 Alignment algorithm | Needleman-Wunsch 
    18507 Similarity matrix | BLOSUM-62 
    18508 SS fraction | 0.3 
    18509 Gap open (HH/SS/other) | 18/18/6 
    18510 Gap extend | 1 
    18511 SS matrix |  |  | H | S | O 
    18512 ---|---|---|--- 
    18513 H | 6 | -9 | -6 
    18514 S |  | 6 | -6 
    18515 O |  |  | 4 
    18516 Iteration cutoff | 2 
    18517  
    18518 Matchmaker combination, chain 9 (#79) with combination, chain 9 (#83),
    18519 sequence alignment score = 674.3 
    18520 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18521 0.000) 
    18522  
    18523 
    18524 > mmaker #84/9 to #80/9 pairing ss
    18525 
    18526 Parameters 
    18527 --- 
    18528 Chain pairing | ss 
    18529 Alignment algorithm | Needleman-Wunsch 
    18530 Similarity matrix | BLOSUM-62 
    18531 SS fraction | 0.3 
    18532 Gap open (HH/SS/other) | 18/18/6 
    18533 Gap extend | 1 
    18534 SS matrix |  |  | H | S | O 
    18535 ---|---|---|--- 
    18536 H | 6 | -9 | -6 
    18537 S |  | 6 | -6 
    18538 O |  |  | 4 
    18539 Iteration cutoff | 2 
    18540  
    18541 Matchmaker combination, chain 9 (#80) with combination, chain 9 (#84),
    18542 sequence alignment score = 674.3 
    18543 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18544 0.000) 
    18545  
    18546 
    18547 > mmaker #85/9 to #81/9 pairing ss
    18548 
    18549 Parameters 
    18550 --- 
    18551 Chain pairing | ss 
    18552 Alignment algorithm | Needleman-Wunsch 
    18553 Similarity matrix | BLOSUM-62 
    18554 SS fraction | 0.3 
    18555 Gap open (HH/SS/other) | 18/18/6 
    18556 Gap extend | 1 
    18557 SS matrix |  |  | H | S | O 
    18558 ---|---|---|--- 
    18559 H | 6 | -9 | -6 
    18560 S |  | 6 | -6 
    18561 O |  |  | 4 
    18562 Iteration cutoff | 2 
    18563  
    18564 Matchmaker combination, chain 9 (#81) with combination, chain 9 (#85),
    18565 sequence alignment score = 674.3 
    18566 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18567 0.000) 
    18568  
    18569 
    18570 > mmaker #86/9 to #82/9 pairing ss
    18571 
    18572 Parameters 
    18573 --- 
    18574 Chain pairing | ss 
    18575 Alignment algorithm | Needleman-Wunsch 
    18576 Similarity matrix | BLOSUM-62 
    18577 SS fraction | 0.3 
    18578 Gap open (HH/SS/other) | 18/18/6 
    18579 Gap extend | 1 
    18580 SS matrix |  |  | H | S | O 
    18581 ---|---|---|--- 
    18582 H | 6 | -9 | -6 
    18583 S |  | 6 | -6 
    18584 O |  |  | 4 
    18585 Iteration cutoff | 2 
    18586  
    18587 Matchmaker combination, chain 9 (#82) with combination, chain 9 (#86),
    18588 sequence alignment score = 674.3 
    18589 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18590 0.000) 
    18591  
    18592 
    18593 > color #83 #fffc79ff
    18594 
    18595 > color #84 #7a81ffff
    18596 
    18597 > color #85 #ff8ad8ff
    18598 
    18599 > color #85 #942193ff
    18600 
    18601 > color #86 #fffc79ff
    18602 
    18603 > color #86 #4f8f00ff
    18604 
    18605 > color #86 #ff2600ff
    18606 
    18607 > color #86 #73fdffff
    18608 
    18609 > show #!56 models
    18610 
    18611 > hide #!56 models
    18612 
    18613 > select subtract #16
    18614 
    18615 Nothing selected 
    18616 
    18617 > select add #16
    18618 
    18619 241 atoms, 240 bonds, 15 residues, 1 model selected 
    18620 
    18621 > select subtract #16
    18622 
    18623 Nothing selected 
    18624 
    18625 > select add #83
    18626 
    18627 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    18628 
    18629 > ui mousemode right "translate selected models"
    18630 
    18631 > view matrix models
    18632 > #83,0.93343,0.35874,0.0035085,-64.329,-0.35405,0.92273,-0.15237,63.256,-0.057899,0.14099,0.98832,-18.301
    18633 
    18634 > ui mousemode right "rotate selected models"
    18635 
    18636 > view matrix models
    18637 > #83,0.92912,0.36978,-0.0020438,-64.965,-0.36643,0.91991,-0.13962,63.745,-0.049748,0.13047,0.9902,-17.793
    18638 
    18639 > view matrix models
    18640 > #83,0.92801,0.37253,-0.0047038,-64.855,-0.37004,0.92018,-0.12783,61.981,-0.043292,0.12037,0.99179,-16.989
    18641 
    18642 > show #!9 models
    18643 
    18644 > hide #!8 models
    18645 
    18646 > show #!8 models
    18647 
    18648 > hide #!9 models
    18649 
    18650 > hide #!83 models
    18651 
    18652 > hide #!84 models
    18653 
    18654 > hide #!85 models
    18655 
    18656 > hide #!86 models
    18657 
    18658 > select add #14
    18659 
    18660 2852 atoms, 2846 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    18661 
    18662 > select subtract #14
    18663 
    18664 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    18665 
    18666 > select add #15
    18667 
    18668 2800 atoms, 2794 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    18669 
    18670 > select subtract #15
    18671 
    18672 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    18673 
    18674 > select add #16
    18675 
    18676 2832 atoms, 2826 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    18677 
    18678 > select subtract #16
    18679 
    18680 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    18681 
    18682 > select add #16
    18683 
    18684 2832 atoms, 2826 bonds, 4 pseudobonds, 182 residues, 3 models selected 
    18685 
    18686 > view matrix models
    18687 > #16,0.92468,-0.13179,-0.35721,116.3,0.10406,0.98994,-0.095853,26.291,0.36625,0.051462,0.92909,-66.338,#83,0.95363,0.29943,0.030676,-54.609,-0.2961,0.95154,-0.083057,32.705,-0.054059,0.070122,0.99607,-1.6331
    18688 
    18689 > view sel
    18690 
    18691 > undo
    18692 
    18693 [Repeated 2 time(s)]
    18694 
    18695 > redo
    18696 
    18697 [Repeated 1 time(s)]
    18698 
    18699 > undo
    18700 
    18701 > select subtract #83
    18702 
    18703 241 atoms, 240 bonds, 15 residues, 1 model selected 
    18704 
    18705 > view sel
    18706 
    18707 > view matrix models
    18708 > #16,0.9227,-0.21273,-0.3215,127.29,0.20216,0.9771,-0.066307,4.9445,0.32825,-0.0038149,0.94458,-50.228
    18709 
    18710 > undo
    18711 
    18712 > view matrix models
    18713 > #16,0.91972,-0.053989,-0.38883,106.49,0.014115,0.99441,-0.10468,43.906,0.39231,0.090792,0.91534,-77.088
    18714 
    18715 > view matrix models
    18716 > #16,0.92145,-0.075878,-0.38101,109.39,0.043112,0.99466,-0.09382,36.307,0.3861,0.070024,0.9198,-72.283
    18717 
    18718 > select add #13
    18719 
    18720 337 atoms, 335 bonds, 1 pseudobond, 23 residues, 3 models selected 
    18721 
    18722 > select subtract #13
    18723 
    18724 241 atoms, 240 bonds, 15 residues, 1 model selected 
    18725 
    18726 > select add #14
    18727 
    18728 502 atoms, 500 bonds, 1 pseudobond, 32 residues, 3 models selected 
    18729 
    18730 > select subtract #14
    18731 
    18732 241 atoms, 240 bonds, 15 residues, 1 model selected 
    18733 
    18734 > select add #15
    18735 
    18736 450 atoms, 448 bonds, 30 residues, 2 models selected 
    18737 
    18738 > view matrix models
    18739 > #15,0.94246,-0.085928,-0.3231,94.884,0.058945,0.99398,-0.092407,33.941,0.32909,0.068044,0.94184,-65.901,#16,0.92298,-0.10367,-0.37062,112.82,0.075772,0.99314,-0.089108,29.475,0.37731,0.054162,0.9245,-68.247
    18740 
    18741 > ui mousemode right "translate selected models"
    18742 
    18743 > view matrix models
    18744 > #15,0.94246,-0.085928,-0.3231,94.138,0.058945,0.99398,-0.092407,33.872,0.32909,0.068044,0.94184,-65.547,#16,0.92298,-0.10367,-0.37062,112.08,0.075772,0.99314,-0.089108,29.405,0.37731,0.054162,0.9245,-67.894
    18745 
    18746 > view matrix models
    18747 > #15,0.94246,-0.085928,-0.3231,93.711,0.058945,0.99398,-0.092407,33.628,0.32909,0.068044,0.94184,-66.207,#16,0.92298,-0.10367,-0.37062,111.65,0.075772,0.99314,-0.089108,29.162,0.37731,0.054162,0.9245,-68.554
    18748 
    18749 > view matrix models
    18750 > #15,0.94246,-0.085928,-0.3231,93.882,0.058945,0.99398,-0.092407,33.753,0.32909,0.068044,0.94184,-66.193,#16,0.92298,-0.10367,-0.37062,111.82,0.075772,0.99314,-0.089108,29.287,0.37731,0.054162,0.9245,-68.54
    18751 
    18752 > view matrix models
    18753 > #15,0.94246,-0.085928,-0.3231,93.679,0.058945,0.99398,-0.092407,33.917,0.32909,0.068044,0.94184,-66.028,#16,0.92298,-0.10367,-0.37062,111.62,0.075772,0.99314,-0.089108,29.451,0.37731,0.054162,0.9245,-68.375
    18754 
    18755 > view matrix models
    18756 > #15,0.94246,-0.085928,-0.3231,93.773,0.058945,0.99398,-0.092407,33.804,0.32909,0.068044,0.94184,-65.957,#16,0.92298,-0.10367,-0.37062,111.71,0.075772,0.99314,-0.089108,29.337,0.37731,0.054162,0.9245,-68.304
    18757 
    18758 > select clear
    18759 
    18760 > combine #13-18,57
    18761 
    18762 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18763 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18764 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18765 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18766 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18767 to 'q' 
    18768 
    18769 > combine #13-18,57
    18770 
    18771 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18772 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18773 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18774 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18775 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18776 to 'q' 
    18777 
    18778 > combine #13-18,57
    18779 
    18780 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18781 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18782 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18783 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18784 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18785 to 'q' 
    18786 
    18787 > combine #13-18,57
    18788 
    18789 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    18790 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    18791 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    18792 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    18793 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    18794 to 'q' 
    18795 
    18796 > mmaker #87/9 to #83/9 pairing ss
    18797 
    18798 Parameters 
    18799 --- 
    18800 Chain pairing | ss 
    18801 Alignment algorithm | Needleman-Wunsch 
    18802 Similarity matrix | BLOSUM-62 
    18803 SS fraction | 0.3 
    18804 Gap open (HH/SS/other) | 18/18/6 
    18805 Gap extend | 1 
    18806 SS matrix |  |  | H | S | O 
    18807 ---|---|---|--- 
    18808 H | 6 | -9 | -6 
    18809 S |  | 6 | -6 
    18810 O |  |  | 4 
    18811 Iteration cutoff | 2 
    18812  
    18813 Matchmaker combination, chain 9 (#83) with combination, chain 9 (#87),
    18814 sequence alignment score = 674.3 
    18815 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18816 0.000) 
    18817  
    18818 
    18819 > mmaker #88/9 to #84/9 pairing ss
    18820 
    18821 Parameters 
    18822 --- 
    18823 Chain pairing | ss 
    18824 Alignment algorithm | Needleman-Wunsch 
    18825 Similarity matrix | BLOSUM-62 
    18826 SS fraction | 0.3 
    18827 Gap open (HH/SS/other) | 18/18/6 
    18828 Gap extend | 1 
    18829 SS matrix |  |  | H | S | O 
    18830 ---|---|---|--- 
    18831 H | 6 | -9 | -6 
    18832 S |  | 6 | -6 
    18833 O |  |  | 4 
    18834 Iteration cutoff | 2 
    18835  
    18836 Matchmaker combination, chain 9 (#84) with combination, chain 9 (#88),
    18837 sequence alignment score = 674.3 
    18838 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18839 0.000) 
    18840  
    18841 
    18842 > mmaker #89/9 to #85/9 pairing ss
    18843 
    18844 Parameters 
    18845 --- 
    18846 Chain pairing | ss 
    18847 Alignment algorithm | Needleman-Wunsch 
    18848 Similarity matrix | BLOSUM-62 
    18849 SS fraction | 0.3 
    18850 Gap open (HH/SS/other) | 18/18/6 
    18851 Gap extend | 1 
    18852 SS matrix |  |  | H | S | O 
    18853 ---|---|---|--- 
    18854 H | 6 | -9 | -6 
    18855 S |  | 6 | -6 
    18856 O |  |  | 4 
    18857 Iteration cutoff | 2 
    18858  
    18859 Matchmaker combination, chain 9 (#85) with combination, chain 9 (#89),
    18860 sequence alignment score = 674.3 
    18861 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18862 0.000) 
    18863  
    18864 
    18865 > mmaker #90/9 to #86/9 pairing ss
    18866 
    18867 Parameters 
    18868 --- 
    18869 Chain pairing | ss 
    18870 Alignment algorithm | Needleman-Wunsch 
    18871 Similarity matrix | BLOSUM-62 
    18872 SS fraction | 0.3 
    18873 Gap open (HH/SS/other) | 18/18/6 
    18874 Gap extend | 1 
    18875 SS matrix |  |  | H | S | O 
    18876 ---|---|---|--- 
    18877 H | 6 | -9 | -6 
    18878 S |  | 6 | -6 
    18879 O |  |  | 4 
    18880 Iteration cutoff | 2 
    18881  
    18882 Matchmaker combination, chain 9 (#86) with combination, chain 9 (#90),
    18883 sequence alignment score = 674.3 
    18884 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    18885 0.000) 
    18886  
    18887 
    18888 > select add #18
    18889 
    18890 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    18891 
    18892 > select subtract #18
    18893 
    18894 Nothing selected 
    18895 
    18896 > select add #17
    18897 
    18898 257 atoms, 259 bonds, 15 residues, 1 model selected 
    18899 
    18900 > select subtract #17
    18901 
    18902 Nothing selected 
    18903 
    18904 > select add #16
    18905 
    18906 241 atoms, 240 bonds, 15 residues, 1 model selected 
    18907 
    18908 > select subtract #16
    18909 
    18910 Nothing selected 
    18911 
    18912 > select add #15
    18913 
    18914 209 atoms, 208 bonds, 15 residues, 1 model selected 
    18915 
    18916 > select subtract #15
    18917 
    18918 Nothing selected 
    18919 
    18920 > select add #14
    18921 
    18922 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    18923 
    18924 > select subtract #14
    18925 
    18926 Nothing selected 
    18927 
    18928 > select add #13
    18929 
    18930 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    18931 
    18932 > select subtract #13
    18933 
    18934 Nothing selected 
    18935 
    18936 > select add #57
    18937 
    18938 197 atoms, 195 bonds, 1 pseudobond, 13 residues, 2 models selected 
    18939 
    18940 > select add #18
    18941 
    18942 1527 atoms, 1524 bonds, 2 pseudobonds, 97 residues, 4 models selected 
    18943 
    18944 > select subtract #18
    18945 
    18946 197 atoms, 195 bonds, 1 pseudobond, 13 residues, 2 models selected 
    18947 
    18948 > select subtract #57
    18949 
    18950 Nothing selected 
    18951 
    18952 > select add #16
    18953 
    18954 241 atoms, 240 bonds, 15 residues, 1 model selected 
    18955 
    18956 > select subtract #16
    18957 
    18958 Nothing selected 
    18959 
    18960 > select add #15
    18961 
    18962 209 atoms, 208 bonds, 15 residues, 1 model selected 
    18963 
    18964 > select subtract #15
    18965 
    18966 Nothing selected 
    18967 
    18968 > select add #14
    18969 
    18970 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    18971 
    18972 > select add #57
    18973 
    18974 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    18975 
    18976 > ui mousemode right "rotate selected models"
    18977 
    18978 > view matrix models
    18979 > #14,0.92073,0.28252,0.26915,-94.155,-0.29821,0.95432,0.018395,38.622,-0.25166,-0.097199,0.96292,75.912,#57,0.91524,0.3331,0.22667,-95.816,-0.36776,0.92047,0.13225,36.42,-0.16459,-0.2044,0.96495,81.796
    18980 
    18981 > ui mousemode right "translate selected models"
    18982 
    18983 > view matrix models
    18984 > #14,0.92073,0.28252,0.26915,-95.276,-0.29821,0.95432,0.018395,38.611,-0.25166,-0.097199,0.96292,76.318,#57,0.91524,0.3331,0.22667,-96.937,-0.36776,0.92047,0.13225,36.409,-0.16459,-0.2044,0.96495,82.202
    18985 
    18986 > view matrix models
    18987 > #14,0.92073,0.28252,0.26915,-95.176,-0.29821,0.95432,0.018395,39.227,-0.25166,-0.097199,0.96292,76.642,#57,0.91524,0.3331,0.22667,-96.836,-0.36776,0.92047,0.13225,37.024,-0.16459,-0.2044,0.96495,82.526
    18988 
    18989 > select subtract #57
    18990 
    18991 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    18992 
    18993 > ui mousemode right "rotate selected models"
    18994 
    18995 > view matrix models
    18996 > #14,0.91109,0.30069,0.28194,-99.494,-0.32105,0.94665,0.027846,43.449,-0.25853,-0.11589,0.95903,82.578
    18997 
    18998 > ui mousemode right "translate selected models"
    18999 
    19000 > view matrix models
    19001 > #14,0.91109,0.30069,0.28194,-99.736,-0.32105,0.94665,0.027846,43.062,-0.25853,-0.11589,0.95903,82.514
    19002 
    19003 > view matrix models
    19004 > #14,0.91109,0.30069,0.28194,-99.786,-0.32105,0.94665,0.027846,43.029,-0.25853,-0.11589,0.95903,82.902
    19005 
    19006 > view matrix models
    19007 > #14,0.91109,0.30069,0.28194,-99.662,-0.32105,0.94665,0.027846,43,-0.25853,-0.11589,0.95903,83.12
    19008 
    19009 > ui mousemode right "rotate selected models"
    19010 
    19011 > view matrix models
    19012 > #14,0.87811,0.33794,0.33869,-111.74,-0.38086,0.92218,0.067292,52.175,-0.2896,-0.18808,0.93849,107.98
    19013 
    19014 > ui mousemode right "translate selected models"
    19015 
    19016 > view matrix models
    19017 > #14,0.87811,0.33794,0.33869,-112.09,-0.38086,0.92218,0.067292,52.497,-0.2896,-0.18808,0.93849,108.76
    19018 
    19019 > view matrix models
    19020 > #14,0.87811,0.33794,0.33869,-112.16,-0.38086,0.92218,0.067292,52.877,-0.2896,-0.18808,0.93849,108.82
    19021 
    19022 > view matrix models
    19023 > #14,0.87811,0.33794,0.33869,-112.16,-0.38086,0.92218,0.067292,52.995,-0.2896,-0.18808,0.93849,108.83
    19024 
    19025 > view matrix models
    19026 > #14,0.87811,0.33794,0.33869,-112.13,-0.38086,0.92218,0.067292,52.762,-0.2896,-0.18808,0.93849,108.56
    19027 
    19028 > view matrix models
    19029 > #14,0.87811,0.33794,0.33869,-112.25,-0.38086,0.92218,0.067292,52.747,-0.2896,-0.18808,0.93849,108.59
    19030 
    19031 > view matrix models
    19032 > #14,0.87811,0.33794,0.33869,-112.27,-0.38086,0.92218,0.067292,52.701,-0.2896,-0.18808,0.93849,108.63
    19033 
    19034 > view matrix models
    19035 > #14,0.87811,0.33794,0.33869,-112.1,-0.38086,0.92218,0.067292,52.772,-0.2896,-0.18808,0.93849,108.89
    19036 
    19037 > view matrix models
    19038 > #14,0.87811,0.33794,0.33869,-111.96,-0.38086,0.92218,0.067292,53.177,-0.2896,-0.18808,0.93849,108.74
    19039 
    19040 > view matrix models
    19041 > #14,0.87811,0.33794,0.33869,-112.07,-0.38086,0.92218,0.067292,52.973,-0.2896,-0.18808,0.93849,108.83
    19042 
    19043 > view matrix models
    19044 > #14,0.87811,0.33794,0.33869,-111.99,-0.38086,0.92218,0.067292,52.904,-0.2896,-0.18808,0.93849,108.64
    19045 
    19046 > view matrix models
    19047 > #14,0.87811,0.33794,0.33869,-111.91,-0.38086,0.92218,0.067292,52.879,-0.2896,-0.18808,0.93849,108.47
    19048 
    19049 > view matrix models
    19050 > #14,0.87811,0.33794,0.33869,-111.95,-0.38086,0.92218,0.067292,52.913,-0.2896,-0.18808,0.93849,108.57
    19051 
    19052 > view matrix models
    19053 > #14,0.87811,0.33794,0.33869,-112.12,-0.38086,0.92218,0.067292,53.012,-0.2896,-0.18808,0.93849,108.52
    19054 
    19055 > view matrix models
    19056 > #14,0.87811,0.33794,0.33869,-112.16,-0.38086,0.92218,0.067292,52.96,-0.2896,-0.18808,0.93849,108.54
    19057 
    19058 > select subtract #14
    19059 
    19060 Nothing selected 
    19061 
    19062 > select add #15
    19063 
    19064 209 atoms, 208 bonds, 15 residues, 1 model selected 
    19065 
    19066 > select subtract #15
    19067 
    19068 Nothing selected 
    19069 
    19070 > select add #16
    19071 
    19072 241 atoms, 240 bonds, 15 residues, 1 model selected 
    19073 
    19074 > ui mousemode right "rotate selected models"
    19075 
    19076 > view matrix models
    19077 > #16,0.9253,-0.11479,-0.36144,111.9,0.074412,0.98952,-0.12376,37.094,0.37185,0.087617,0.92415,-74.465
    19078 
    19079 > undo
    19080 
    19081 > view matrix models
    19082 > #16,0.92414,-0.10409,-0.36761,111,0.070346,0.99208,-0.10406,33.483,0.37553,0.070308,0.92414,-71.399
    19083 
    19084 > undo
    19085 
    19086 > view matrix models
    19087 > #16,0.82095,0.26002,-0.50836,78.694,0.56601,-0.48795,0.66448,112.42,-0.075278,-0.83324,-0.54776,494.42
    19088 
    19089 > undo
    19090 
    19091 > view matrix models
    19092 > #16,0.92524,-0.097734,-0.36658,109.22,0.049623,0.98912,-0.13846,44.681,0.37613,0.10992,0.92003,-79.303
    19093 
    19094 > undo
    19095 
    19096 > view matrix models
    19097 > #16,0.92578,-0.10266,-0.36385,109.65,0.051395,0.98766,-0.14791,46.495,0.37455,0.11823,0.91964,-80.734
    19098 
    19099 > view sel
    19100 
    19101 > ui mousemode right "translate selected models"
    19102 
    19103 > view matrix models
    19104 > #16,0.92578,-0.10266,-0.36385,109.69,0.051395,0.98766,-0.14791,46.285,0.37455,0.11823,0.91964,-80.673
    19105 
    19106 > view matrix models
    19107 > #16,0.92578,-0.10266,-0.36385,109.67,0.051395,0.98766,-0.14791,46.271,0.37455,0.11823,0.91964,-80.713
    19108 
    19109 > view matrix models
    19110 > #16,0.92578,-0.10266,-0.36385,109.21,0.051395,0.98766,-0.14791,46.827,0.37455,0.11823,0.91964,-80.209
    19111 
    19112 > view matrix models
    19113 > #16,0.92578,-0.10266,-0.36385,109.14,0.051395,0.98766,-0.14791,46.795,0.37455,0.11823,0.91964,-80.257
    19114 
    19115 > view matrix models
    19116 > #16,0.92578,-0.10266,-0.36385,109.11,0.051395,0.98766,-0.14791,46.976,0.37455,0.11823,0.91964,-80.33
    19117 
    19118 > view matrix models
    19119 > #16,0.92578,-0.10266,-0.36385,109.1,0.051395,0.98766,-0.14791,47.018,0.37455,0.11823,0.91964,-80.306
    19120 
    19121 > view matrix models
    19122 > #16,0.92578,-0.10266,-0.36385,109.05,0.051395,0.98766,-0.14791,46.982,0.37455,0.11823,0.91964,-80.361
    19123 
    19124 > view matrix models
    19125 > #16,0.92578,-0.10266,-0.36385,109.02,0.051395,0.98766,-0.14791,47.083,0.37455,0.11823,0.91964,-80.38
    19126 
    19127 > close #87-90
    19128 
    19129 > combine #13-18,57
    19130 
    19131 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19132 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19133 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19134 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19135 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19136 to 'q' 
    19137 
    19138 > combine #13-18,57
    19139 
    19140 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19141 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19142 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19143 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19144 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19145 to 'q' 
    19146 
    19147 > combine #13-18,57
    19148 
    19149 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19150 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19151 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19152 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19153 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19154 to 'q' 
    19155 
    19156 > combine #13-18,57
    19157 
    19158 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19159 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19160 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19161 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19162 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19163 to 'q' 
    19164 
    19165 > mmaker #87/9 to #83/9 pairing ss
    19166 
    19167 Parameters 
    19168 --- 
    19169 Chain pairing | ss 
    19170 Alignment algorithm | Needleman-Wunsch 
    19171 Similarity matrix | BLOSUM-62 
    19172 SS fraction | 0.3 
    19173 Gap open (HH/SS/other) | 18/18/6 
    19174 Gap extend | 1 
    19175 SS matrix |  |  | H | S | O 
    19176 ---|---|---|--- 
    19177 H | 6 | -9 | -6 
    19178 S |  | 6 | -6 
    19179 O |  |  | 4 
    19180 Iteration cutoff | 2 
    19181  
    19182 Matchmaker combination, chain 9 (#83) with combination, chain 9 (#87),
    19183 sequence alignment score = 674.3 
    19184 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19185 0.000) 
    19186  
    19187 
    19188 > mmaker #88/9 to #84/9 pairing ss
    19189 
    19190 Parameters 
    19191 --- 
    19192 Chain pairing | ss 
    19193 Alignment algorithm | Needleman-Wunsch 
    19194 Similarity matrix | BLOSUM-62 
    19195 SS fraction | 0.3 
    19196 Gap open (HH/SS/other) | 18/18/6 
    19197 Gap extend | 1 
    19198 SS matrix |  |  | H | S | O 
    19199 ---|---|---|--- 
    19200 H | 6 | -9 | -6 
    19201 S |  | 6 | -6 
    19202 O |  |  | 4 
    19203 Iteration cutoff | 2 
    19204  
    19205 Matchmaker combination, chain 9 (#84) with combination, chain 9 (#88),
    19206 sequence alignment score = 674.3 
    19207 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19208 0.000) 
    19209  
    19210 
    19211 > mmaker #89/9 to #85/9 pairing ss
    19212 
    19213 Parameters 
    19214 --- 
    19215 Chain pairing | ss 
    19216 Alignment algorithm | Needleman-Wunsch 
    19217 Similarity matrix | BLOSUM-62 
    19218 SS fraction | 0.3 
    19219 Gap open (HH/SS/other) | 18/18/6 
    19220 Gap extend | 1 
    19221 SS matrix |  |  | H | S | O 
    19222 ---|---|---|--- 
    19223 H | 6 | -9 | -6 
    19224 S |  | 6 | -6 
    19225 O |  |  | 4 
    19226 Iteration cutoff | 2 
    19227  
    19228 Matchmaker combination, chain 9 (#85) with combination, chain 9 (#89),
    19229 sequence alignment score = 674.3 
    19230 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19231 0.000) 
    19232  
    19233 
    19234 > mmaker #90/9 to #86/9 pairing ss
    19235 
    19236 Parameters 
    19237 --- 
    19238 Chain pairing | ss 
    19239 Alignment algorithm | Needleman-Wunsch 
    19240 Similarity matrix | BLOSUM-62 
    19241 SS fraction | 0.3 
    19242 Gap open (HH/SS/other) | 18/18/6 
    19243 Gap extend | 1 
    19244 SS matrix |  |  | H | S | O 
    19245 ---|---|---|--- 
    19246 H | 6 | -9 | -6 
    19247 S |  | 6 | -6 
    19248 O |  |  | 4 
    19249 Iteration cutoff | 2 
    19250  
    19251 Matchmaker combination, chain 9 (#86) with combination, chain 9 (#90),
    19252 sequence alignment score = 674.3 
    19253 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19254 0.000) 
    19255  
    19256 
    19257 > view matrix models
    19258 > #16,0.92578,-0.10266,-0.36385,108.81,0.051395,0.98766,-0.14791,47.014,0.37455,0.11823,0.91964,-80.343
    19259 
    19260 > undo
    19261 
    19262 > view matrix models
    19263 > #16,0.92578,-0.10266,-0.36385,109.14,0.051395,0.98766,-0.14791,47.088,0.37455,0.11823,0.91964,-80.475
    19264 
    19265 > view matrix models
    19266 > #16,0.92578,-0.10266,-0.36385,109.11,0.051395,0.98766,-0.14791,47.166,0.37455,0.11823,0.91964,-80.492
    19267 
    19268 > view matrix models
    19269 > #16,0.92578,-0.10266,-0.36385,109.1,0.051395,0.98766,-0.14791,47.358,0.37455,0.11823,0.91964,-80.52
    19270 
    19271 > view matrix models
    19272 > #16,0.92578,-0.10266,-0.36385,108.88,0.051395,0.98766,-0.14791,47.291,0.37455,0.11823,0.91964,-80.791
    19273 
    19274 > view matrix models
    19275 > #16,0.92578,-0.10266,-0.36385,108.88,0.051395,0.98766,-0.14791,47.22,0.37455,0.11823,0.91964,-80.767
    19276 
    19277 > view matrix models
    19278 > #16,0.92578,-0.10266,-0.36385,108.89,0.051395,0.98766,-0.14791,47.167,0.37455,0.11823,0.91964,-80.746
    19279 
    19280 > select add #17
    19281 
    19282 498 atoms, 499 bonds, 30 residues, 2 models selected 
    19283 
    19284 > select subtract #16
    19285 
    19286 257 atoms, 259 bonds, 15 residues, 1 model selected 
    19287 
    19288 > select add #18
    19289 
    19290 1587 atoms, 1588 bonds, 1 pseudobond, 99 residues, 3 models selected 
    19291 
    19292 > select subtract #17
    19293 
    19294 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    19295 
    19296 > select subtract #18
    19297 
    19298 Nothing selected 
    19299 
    19300 > select add #13
    19301 
    19302 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    19303 
    19304 > select subtract #13
    19305 
    19306 Nothing selected 
    19307 
    19308 > select add #14
    19309 
    19310 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    19311 
    19312 > ui mousemode right "rotate selected models"
    19313 
    19314 > view matrix models
    19315 > #14,0.82945,0.39739,0.39256,-125.24,-0.48324,0.86298,0.14744,69.85,-0.28018,-0.31199,0.90783,138.17
    19316 
    19317 > view matrix models
    19318 > #14,0.83517,0.16493,0.52468,-103.34,-0.34678,0.89837,0.2696,12.88,-0.42689,-0.40711,0.80748,205.34
    19319 
    19320 > view matrix models
    19321 > #14,0.83187,0.18904,0.52179,-107.14,-0.35821,0.90102,0.24466,19.283,-0.42389,-0.39043,0.81724,199.46
    19322 
    19323 > ui mousemode right "translate selected models"
    19324 
    19325 > view matrix models
    19326 > #14,0.83187,0.18904,0.52179,-105.98,-0.35821,0.90102,0.24466,19.067,-0.42389,-0.39043,0.81724,200.42
    19327 
    19328 > view matrix models
    19329 > #14,0.83187,0.18904,0.52179,-106.1,-0.35821,0.90102,0.24466,19.478,-0.42389,-0.39043,0.81724,200.79
    19330 
    19331 > view matrix models
    19332 > #14,0.83187,0.18904,0.52179,-106.25,-0.35821,0.90102,0.24466,19.413,-0.42389,-0.39043,0.81724,200.89
    19333 
    19334 > view matrix models
    19335 > #14,0.83187,0.18904,0.52179,-105.83,-0.35821,0.90102,0.24466,19.391,-0.42389,-0.39043,0.81724,200.79
    19336 
    19337 > view matrix models
    19338 > #14,0.83187,0.18904,0.52179,-105.83,-0.35821,0.90102,0.24466,19.38,-0.42389,-0.39043,0.81724,200.79
    19339 
    19340 > view matrix models
    19341 > #14,0.83187,0.18904,0.52179,-106.05,-0.35821,0.90102,0.24466,19.182,-0.42389,-0.39043,0.81724,200.86
    19342 
    19343 > ui mousemode right "rotate selected models"
    19344 
    19345 > view matrix models
    19346 > #14,0.84585,0.21179,0.48957,-107.35,-0.35344,0.90994,0.21699,21.66,-0.39953,-0.35658,0.84453,183.96
    19347 
    19348 > ui mousemode right "translate selected models"
    19349 
    19350 > view matrix models
    19351 > #14,0.84585,0.21179,0.48957,-107.24,-0.35344,0.90994,0.21699,21.758,-0.39953,-0.35658,0.84453,183.85
    19352 
    19353 > view matrix models
    19354 > #14,0.84585,0.21179,0.48957,-107.42,-0.35344,0.90994,0.21699,21.671,-0.39953,-0.35658,0.84453,184.15
    19355 
    19356 > view matrix models
    19357 > #14,0.84585,0.21179,0.48957,-107.61,-0.35344,0.90994,0.21699,21.459,-0.39953,-0.35658,0.84453,184.2
    19358 
    19359 > view matrix models
    19360 > #14,0.84585,0.21179,0.48957,-107.65,-0.35344,0.90994,0.21699,21.454,-0.39953,-0.35658,0.84453,184.53
    19361 
    19362 > view matrix models
    19363 > #14,0.84585,0.21179,0.48957,-107.44,-0.35344,0.90994,0.21699,21.697,-0.39953,-0.35658,0.84453,184.42
    19364 
    19365 > view matrix models
    19366 > #14,0.84585,0.21179,0.48957,-107.31,-0.35344,0.90994,0.21699,21.709,-0.39953,-0.35658,0.84453,184.81
    19367 
    19368 > select clear
    19369 
    19370 > close #87-90
    19371 
    19372 > combine #13-18,57
    19373 
    19374 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19375 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19376 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19377 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19378 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19379 to 'q' 
    19380 
    19381 > combine #13-18,57
    19382 
    19383 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19384 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19385 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19386 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19387 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19388 to 'q' 
    19389 
    19390 > combine #13-18,57
    19391 
    19392 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19393 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19394 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19395 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19396 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19397 to 'q' 
    19398 
    19399 > combine #13-18,57
    19400 
    19401 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19402 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19403 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19404 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19405 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19406 to 'q' 
    19407 
    19408 > mmaker #87/9 to #83/9 pairing ss
    19409 
    19410 Parameters 
    19411 --- 
    19412 Chain pairing | ss 
    19413 Alignment algorithm | Needleman-Wunsch 
    19414 Similarity matrix | BLOSUM-62 
    19415 SS fraction | 0.3 
    19416 Gap open (HH/SS/other) | 18/18/6 
    19417 Gap extend | 1 
    19418 SS matrix |  |  | H | S | O 
    19419 ---|---|---|--- 
    19420 H | 6 | -9 | -6 
    19421 S |  | 6 | -6 
    19422 O |  |  | 4 
    19423 Iteration cutoff | 2 
    19424  
    19425 Matchmaker combination, chain 9 (#83) with combination, chain 9 (#87),
    19426 sequence alignment score = 674.3 
    19427 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19428 0.000) 
    19429  
    19430 
    19431 > mmaker #88/9 to #84/9 pairing ss
    19432 
    19433 Parameters 
    19434 --- 
    19435 Chain pairing | ss 
    19436 Alignment algorithm | Needleman-Wunsch 
    19437 Similarity matrix | BLOSUM-62 
    19438 SS fraction | 0.3 
    19439 Gap open (HH/SS/other) | 18/18/6 
    19440 Gap extend | 1 
    19441 SS matrix |  |  | H | S | O 
    19442 ---|---|---|--- 
    19443 H | 6 | -9 | -6 
    19444 S |  | 6 | -6 
    19445 O |  |  | 4 
    19446 Iteration cutoff | 2 
    19447  
    19448 Matchmaker combination, chain 9 (#84) with combination, chain 9 (#88),
    19449 sequence alignment score = 674.3 
    19450 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19451 0.000) 
    19452  
    19453 
    19454 > mmaker #89/9 to #85/9 pairing ss
    19455 
    19456 Parameters 
    19457 --- 
    19458 Chain pairing | ss 
    19459 Alignment algorithm | Needleman-Wunsch 
    19460 Similarity matrix | BLOSUM-62 
    19461 SS fraction | 0.3 
    19462 Gap open (HH/SS/other) | 18/18/6 
    19463 Gap extend | 1 
    19464 SS matrix |  |  | H | S | O 
    19465 ---|---|---|--- 
    19466 H | 6 | -9 | -6 
    19467 S |  | 6 | -6 
    19468 O |  |  | 4 
    19469 Iteration cutoff | 2 
    19470  
    19471 Matchmaker combination, chain 9 (#85) with combination, chain 9 (#89),
    19472 sequence alignment score = 674.3 
    19473 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19474 0.000) 
    19475  
    19476 
    19477 > mmaker #90/9 to #86/9 pairing ss
    19478 
    19479 Parameters 
    19480 --- 
    19481 Chain pairing | ss 
    19482 Alignment algorithm | Needleman-Wunsch 
    19483 Similarity matrix | BLOSUM-62 
    19484 SS fraction | 0.3 
    19485 Gap open (HH/SS/other) | 18/18/6 
    19486 Gap extend | 1 
    19487 SS matrix |  |  | H | S | O 
    19488 ---|---|---|--- 
    19489 H | 6 | -9 | -6 
    19490 S |  | 6 | -6 
    19491 O |  |  | 4 
    19492 Iteration cutoff | 2 
    19493  
    19494 Matchmaker combination, chain 9 (#86) with combination, chain 9 (#90),
    19495 sequence alignment score = 674.3 
    19496 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19497 0.000) 
    19498  
    19499 
    19500 > select add #89
    19501 
    19502 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    19503 
    19504 > select subtract #89
    19505 
    19506 Nothing selected 
    19507 
    19508 > select add #88
    19509 
    19510 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    19511 
    19512 > select subtract #88
    19513 
    19514 Nothing selected 
    19515 
    19516 > select add #87
    19517 
    19518 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    19519 
    19520 > select subtract #87
    19521 
    19522 Nothing selected 
    19523 
    19524 > select add #90
    19525 
    19526 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    19527 
    19528 > select subtract #90
    19529 
    19530 Nothing selected 
    19531 
    19532 > select add #18
    19533 
    19534 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    19535 
    19536 > select subtract #18
    19537 
    19538 Nothing selected 
    19539 
    19540 > select add #17
    19541 
    19542 257 atoms, 259 bonds, 15 residues, 1 model selected 
    19543 
    19544 > select subtract #17
    19545 
    19546 Nothing selected 
    19547 
    19548 > select add #16
    19549 
    19550 241 atoms, 240 bonds, 15 residues, 1 model selected 
    19551 
    19552 > select subtract #16
    19553 
    19554 Nothing selected 
    19555 
    19556 > select add #15
    19557 
    19558 209 atoms, 208 bonds, 15 residues, 1 model selected 
    19559 
    19560 > select subtract #15
    19561 
    19562 Nothing selected 
    19563 
    19564 > select add #15
    19565 
    19566 209 atoms, 208 bonds, 15 residues, 1 model selected 
    19567 
    19568 > select subtract #15
    19569 
    19570 Nothing selected 
    19571 
    19572 > select add #14
    19573 
    19574 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    19575 
    19576 > select add #13
    19577 
    19578 357 atoms, 355 bonds, 2 pseudobonds, 25 residues, 4 models selected 
    19579 
    19580 > select subtract #13
    19581 
    19582 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    19583 
    19584 > select add #15
    19585 
    19586 470 atoms, 468 bonds, 1 pseudobond, 32 residues, 3 models selected 
    19587 
    19588 > select subtract #15
    19589 
    19590 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    19591 
    19592 > select add #16
    19593 
    19594 502 atoms, 500 bonds, 1 pseudobond, 32 residues, 3 models selected 
    19595 
    19596 > select subtract #16
    19597 
    19598 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    19599 
    19600 > select add #17
    19601 
    19602 518 atoms, 519 bonds, 1 pseudobond, 32 residues, 3 models selected 
    19603 
    19604 > select subtract #17
    19605 
    19606 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    19607 
    19608 > select add #18
    19609 
    19610 1591 atoms, 1589 bonds, 2 pseudobonds, 101 residues, 4 models selected 
    19611 
    19612 > select subtract #18
    19613 
    19614 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    19615 
    19616 > select add #57
    19617 
    19618 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    19619 
    19620 > ui mousemode right "rotate selected models"
    19621 
    19622 > view matrix models
    19623 > #14,0.87128,0.181,0.4562,-99.255,-0.29975,0.93226,0.2026,9.2561,-0.38862,-0.31326,0.86651,169.2,#57,0.93478,0.29751,0.19411,-86.678,-0.32082,0.94167,0.10168,29.246,-0.15254,-0.15732,0.9757,67.969
    19624 
    19625 > view matrix models
    19626 > #14,0.90918,-0.011606,0.41625,-57.833,-0.33912,0.55947,0.7563,-10.109,-0.24166,-0.82877,0.50472,320.23,#57,0.97819,0.10241,0.1807,-50.599,-0.20144,0.67977,0.70522,-54.634,-0.050617,-0.72624,0.68558,226.57
    19627 
    19628 > undo
    19629 
    19630 > close #87-90
    19631 
    19632 > combine #13-18,57
    19633 
    19634 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19635 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19636 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19637 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19638 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19639 to 'q' 
    19640 
    19641 > combine #13-18,57
    19642 
    19643 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19644 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19645 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19646 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19647 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19648 to 'q' 
    19649 
    19650 > combine #13-18,57
    19651 
    19652 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19653 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19654 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19655 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19656 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19657 to 'q' 
    19658 
    19659 > combine #13-18,57
    19660 
    19661 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19662 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19663 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19664 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19665 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19666 to 'q' 
    19667 
    19668 > mmaker #87/9 to #83/9 pairing ss
    19669 
    19670 Parameters 
    19671 --- 
    19672 Chain pairing | ss 
    19673 Alignment algorithm | Needleman-Wunsch 
    19674 Similarity matrix | BLOSUM-62 
    19675 SS fraction | 0.3 
    19676 Gap open (HH/SS/other) | 18/18/6 
    19677 Gap extend | 1 
    19678 SS matrix |  |  | H | S | O 
    19679 ---|---|---|--- 
    19680 H | 6 | -9 | -6 
    19681 S |  | 6 | -6 
    19682 O |  |  | 4 
    19683 Iteration cutoff | 2 
    19684  
    19685 Matchmaker combination, chain 9 (#83) with combination, chain 9 (#87),
    19686 sequence alignment score = 674.3 
    19687 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19688 0.000) 
    19689  
    19690 
    19691 > mmaker #88/9 to #84/9 pairing ss
    19692 
    19693 Parameters 
    19694 --- 
    19695 Chain pairing | ss 
    19696 Alignment algorithm | Needleman-Wunsch 
    19697 Similarity matrix | BLOSUM-62 
    19698 SS fraction | 0.3 
    19699 Gap open (HH/SS/other) | 18/18/6 
    19700 Gap extend | 1 
    19701 SS matrix |  |  | H | S | O 
    19702 ---|---|---|--- 
    19703 H | 6 | -9 | -6 
    19704 S |  | 6 | -6 
    19705 O |  |  | 4 
    19706 Iteration cutoff | 2 
    19707  
    19708 Matchmaker combination, chain 9 (#84) with combination, chain 9 (#88),
    19709 sequence alignment score = 674.3 
    19710 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19711 0.000) 
    19712  
    19713 
    19714 > mmaker #89/9 to #85/9 pairing ss
    19715 
    19716 Parameters 
    19717 --- 
    19718 Chain pairing | ss 
    19719 Alignment algorithm | Needleman-Wunsch 
    19720 Similarity matrix | BLOSUM-62 
    19721 SS fraction | 0.3 
    19722 Gap open (HH/SS/other) | 18/18/6 
    19723 Gap extend | 1 
    19724 SS matrix |  |  | H | S | O 
    19725 ---|---|---|--- 
    19726 H | 6 | -9 | -6 
    19727 S |  | 6 | -6 
    19728 O |  |  | 4 
    19729 Iteration cutoff | 2 
    19730  
    19731 Matchmaker combination, chain 9 (#85) with combination, chain 9 (#89),
    19732 sequence alignment score = 674.3 
    19733 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19734 0.000) 
    19735  
    19736 
    19737 > mmaker #90/9 to #86/9 pairing ss
    19738 
    19739 Parameters 
    19740 --- 
    19741 Chain pairing | ss 
    19742 Alignment algorithm | Needleman-Wunsch 
    19743 Similarity matrix | BLOSUM-62 
    19744 SS fraction | 0.3 
    19745 Gap open (HH/SS/other) | 18/18/6 
    19746 Gap extend | 1 
    19747 SS matrix |  |  | H | S | O 
    19748 ---|---|---|--- 
    19749 H | 6 | -9 | -6 
    19750 S |  | 6 | -6 
    19751 O |  |  | 4 
    19752 Iteration cutoff | 2 
    19753  
    19754 Matchmaker combination, chain 9 (#86) with combination, chain 9 (#90),
    19755 sequence alignment score = 674.3 
    19756 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19757 0.000) 
    19758  
    19759 
    19760 > ui mousemode right "translate selected models"
    19761 
    19762 > view matrix models
    19763 > #14,0.87128,0.181,0.4562,-98.853,-0.29975,0.93226,0.2026,9.3011,-0.38862,-0.31326,0.86651,168.07,#57,0.93478,0.29751,0.19411,-86.276,-0.32082,0.94167,0.10168,29.291,-0.15254,-0.15732,0.9757,66.832
    19764 
    19765 > select subtract #57
    19766 
    19767 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    19768 
    19769 > view matrix models
    19770 > #14,0.87128,0.181,0.4562,-98.52,-0.29975,0.93226,0.2026,9.08,-0.38862,-0.31326,0.86651,167.59
    19771 
    19772 > show #!9 models
    19773 
    19774 > hide #!9 models
    19775 
    19776 > select add #57
    19777 
    19778 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    19779 
    19780 > view matrix models
    19781 > #14,0.87128,0.181,0.4562,-97.721,-0.29975,0.93226,0.2026,8.5745,-0.38862,-0.31326,0.86651,167.22,#57,0.93478,0.29751,0.19411,-85.478,-0.32082,0.94167,0.10168,28.786,-0.15254,-0.15732,0.9757,66.464
    19782 
    19783 > view matrix models
    19784 > #14,0.87128,0.181,0.4562,-97.232,-0.29975,0.93226,0.2026,8.4033,-0.38862,-0.31326,0.86651,167.24,#57,0.93478,0.29751,0.19411,-84.988,-0.32082,0.94167,0.10168,28.615,-0.15254,-0.15732,0.9757,66.482
    19785 
    19786 > ui mousemode right "rotate selected models"
    19787 
    19788 > view matrix models
    19789 > #14,0.86401,0.20928,0.45791,-102.19,-0.32479,0.92664,0.18933,17.037,-0.3847,-0.31231,0.8686,165.87,#57,0.9258,0.32531,0.19252,-88.908,-0.34769,0.93268,0.096021,36.887,-0.14833,-0.15583,0.97658,65.171
    19790 
    19791 > view matrix models
    19792 > #14,0.84659,0.2241,0.48278,-106.75,-0.3629,0.90655,0.21558,23.69,-0.38935,-0.3577,0.8488,180.29,#57,0.91339,0.3439,0.21785,-95.383,-0.37698,0.91651,0.13377,38.777,-0.15365,-0.20431,0.96677,78.531
    19793 
    19794 > ui mousemode right "translate selected models"
    19795 
    19796 > view matrix models
    19797 > #14,0.84659,0.2241,0.48278,-107.03,-0.3629,0.90655,0.21558,23.599,-0.38935,-0.3577,0.8488,180.61,#57,0.91339,0.3439,0.21785,-95.662,-0.37698,0.91651,0.13377,38.686,-0.15365,-0.20431,0.96677,78.857
    19798 
    19799 > view matrix models
    19800 > #14,0.84659,0.2241,0.48278,-107.32,-0.3629,0.90655,0.21558,23.377,-0.38935,-0.3577,0.8488,180.89,#57,0.91339,0.3439,0.21785,-95.955,-0.37698,0.91651,0.13377,38.464,-0.15365,-0.20431,0.96677,79.132
    19801 
    19802 > view matrix models
    19803 > #14,0.84659,0.2241,0.48278,-107.32,-0.3629,0.90655,0.21558,23.392,-0.38935,-0.3577,0.8488,180.89,#57,0.91339,0.3439,0.21785,-95.95,-0.37698,0.91651,0.13377,38.479,-0.15365,-0.20431,0.96677,79.132
    19804 
    19805 > ui mousemode right "rotate selected models"
    19806 
    19807 > view matrix models
    19808 > #14,0.8421,0.26168,0.47159,-112.31,-0.39165,0.89785,0.20116,33.625,-0.37078,-0.3541,0.85857,174.62,#57,0.90338,0.37847,0.20164,-98.288,-0.40746,0.90414,0.12846,48.115,-0.13369,-0.19821,0.971,73.105
    19809 
    19810 > view matrix models
    19811 > #14,0.85007,0.24951,0.46382,-109.76,-0.37346,0.90653,0.19679,29.072,-0.37137,-0.3405,0.8638,170.82,#57,0.91033,0.36536,0.19444,-95.434,-0.39153,0.91252,0.11838,45.155,-0.13418,-0.1839,0.97374,69.593
    19812 
    19813 > ui mousemode right "translate selected models"
    19814 
    19815 > view matrix models
    19816 > #14,0.85007,0.24951,0.46382,-109.9,-0.37346,0.90653,0.19679,29.596,-0.37137,-0.3405,0.8638,170.6,#57,0.91033,0.36536,0.19444,-95.57,-0.39153,0.91252,0.11838,45.679,-0.13418,-0.1839,0.97374,69.372
    19817 
    19818 > view matrix models
    19819 > #14,0.85007,0.24951,0.46382,-110.12,-0.37346,0.90653,0.19679,29.468,-0.37137,-0.3405,0.8638,170.84,#57,0.91033,0.36536,0.19444,-95.786,-0.39153,0.91252,0.11838,45.551,-0.13418,-0.1839,0.97374,69.615
    19820 
    19821 > select clear
    19822 
    19823 > close #87-90
    19824 
    19825 > combine #13-18,57
    19826 
    19827 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19828 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19829 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19830 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19831 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19832 to 'q' 
    19833 
    19834 > combine #13-18,57
    19835 
    19836 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19837 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19838 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19839 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19840 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19841 to 'q' 
    19842 
    19843 > combine #13-18,57
    19844 
    19845 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19846 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19847 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19848 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19849 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19850 to 'q' 
    19851 
    19852 > combine #13-18,57
    19853 
    19854 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    19855 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    19856 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    19857 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    19858 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    19859 to 'q' 
    19860 
    19861 > mmaker #87/9 to #83/9 pairing ss
    19862 
    19863 Parameters 
    19864 --- 
    19865 Chain pairing | ss 
    19866 Alignment algorithm | Needleman-Wunsch 
    19867 Similarity matrix | BLOSUM-62 
    19868 SS fraction | 0.3 
    19869 Gap open (HH/SS/other) | 18/18/6 
    19870 Gap extend | 1 
    19871 SS matrix |  |  | H | S | O 
    19872 ---|---|---|--- 
    19873 H | 6 | -9 | -6 
    19874 S |  | 6 | -6 
    19875 O |  |  | 4 
    19876 Iteration cutoff | 2 
    19877  
    19878 Matchmaker combination, chain 9 (#83) with combination, chain 9 (#87),
    19879 sequence alignment score = 674.3 
    19880 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19881 0.000) 
    19882  
    19883 
    19884 > mmaker #88/9 to #84/9 pairing ss
    19885 
    19886 Parameters 
    19887 --- 
    19888 Chain pairing | ss 
    19889 Alignment algorithm | Needleman-Wunsch 
    19890 Similarity matrix | BLOSUM-62 
    19891 SS fraction | 0.3 
    19892 Gap open (HH/SS/other) | 18/18/6 
    19893 Gap extend | 1 
    19894 SS matrix |  |  | H | S | O 
    19895 ---|---|---|--- 
    19896 H | 6 | -9 | -6 
    19897 S |  | 6 | -6 
    19898 O |  |  | 4 
    19899 Iteration cutoff | 2 
    19900  
    19901 Matchmaker combination, chain 9 (#84) with combination, chain 9 (#88),
    19902 sequence alignment score = 674.3 
    19903 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19904 0.000) 
    19905  
    19906 
    19907 > mmaker #89/9 to #85/9 pairing ss
    19908 
    19909 Parameters 
    19910 --- 
    19911 Chain pairing | ss 
    19912 Alignment algorithm | Needleman-Wunsch 
    19913 Similarity matrix | BLOSUM-62 
    19914 SS fraction | 0.3 
    19915 Gap open (HH/SS/other) | 18/18/6 
    19916 Gap extend | 1 
    19917 SS matrix |  |  | H | S | O 
    19918 ---|---|---|--- 
    19919 H | 6 | -9 | -6 
    19920 S |  | 6 | -6 
    19921 O |  |  | 4 
    19922 Iteration cutoff | 2 
    19923  
    19924 Matchmaker combination, chain 9 (#85) with combination, chain 9 (#89),
    19925 sequence alignment score = 674.3 
    19926 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19927 0.000) 
    19928  
    19929 
    19930 > mmaker #90/9 to #86/9 pairing ss
    19931 
    19932 Parameters 
    19933 --- 
    19934 Chain pairing | ss 
    19935 Alignment algorithm | Needleman-Wunsch 
    19936 Similarity matrix | BLOSUM-62 
    19937 SS fraction | 0.3 
    19938 Gap open (HH/SS/other) | 18/18/6 
    19939 Gap extend | 1 
    19940 SS matrix |  |  | H | S | O 
    19941 ---|---|---|--- 
    19942 H | 6 | -9 | -6 
    19943 S |  | 6 | -6 
    19944 O |  |  | 4 
    19945 Iteration cutoff | 2 
    19946  
    19947 Matchmaker combination, chain 9 (#86) with combination, chain 9 (#90),
    19948 sequence alignment score = 674.3 
    19949 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    19950 0.000) 
    19951  
    19952 
    19953 > select add #33
    19954 
    19955 2584 atoms, 2582 bonds, 3 pseudobonds, 166 residues, 2 models selected 
    19956 
    19957 > select subtract #33
    19958 
    19959 Nothing selected 
    19960 
    19961 > select add #16
    19962 
    19963 241 atoms, 240 bonds, 15 residues, 1 model selected 
    19964 
    19965 > ui mousemode right "rotate selected models"
    19966 
    19967 > view matrix models
    19968 > #16,0.92288,-0.13427,-0.36093,115.72,0.048239,0.97017,-0.23756,68.932,0.38207,0.20183,0.90183,-96.829
    19969 
    19970 > ui mousemode right "translate selected models"
    19971 
    19972 > view matrix models
    19973 > #16,0.92288,-0.13427,-0.36093,115.3,0.048239,0.97017,-0.23756,69.121,0.38207,0.20183,0.90183,-95.672
    19974 
    19975 > view matrix models
    19976 > #16,0.92288,-0.13427,-0.36093,115.82,0.048239,0.97017,-0.23756,68.78,0.38207,0.20183,0.90183,-95.87
    19977 
    19978 > view matrix models
    19979 > #16,0.92288,-0.13427,-0.36093,115.64,0.048239,0.97017,-0.23756,69.018,0.38207,0.20183,0.90183,-95.446
    19980 
    19981 > select add #15
    19982 
    19983 450 atoms, 448 bonds, 30 residues, 2 models selected 
    19984 
    19985 > ui mousemode right "rotate selected models"
    19986 
    19987 > view matrix models
    19988 > #15,0.94204,-0.095512,-0.32162,95.547,0.060553,0.99128,-0.11702,38.909,0.33,0.090761,0.93961,-70.394,#16,0.92259,-0.14354,-0.35808,117.05,0.048451,0.96396,-0.26158,74.998,0.38272,0.22399,0.8963,-99.079
    19989 
    19990 > ui mousemode right "translate selected models"
    19991 
    19992 > view matrix models
    19993 > #15,0.94204,-0.095512,-0.32162,95.462,0.060553,0.99128,-0.11702,38.988,0.33,0.090761,0.93961,-70.169,#16,0.92259,-0.14354,-0.35808,116.97,0.048451,0.96396,-0.26158,75.077,0.38272,0.22399,0.8963,-98.854
    19994 
    19995 > view matrix models
    19996 > #15,0.94204,-0.095512,-0.32162,95.409,0.060553,0.99128,-0.11702,39.214,0.33,0.090761,0.93961,-70.237,#16,0.92259,-0.14354,-0.35808,116.91,0.048451,0.96396,-0.26158,75.303,0.38272,0.22399,0.8963,-98.922
    19997 
    19998 > view matrix models
    19999 > #15,0.94204,-0.095512,-0.32162,95.549,0.060553,0.99128,-0.11702,39.245,0.33,0.090761,0.93961,-70.207,#16,0.92259,-0.14354,-0.35808,117.05,0.048451,0.96396,-0.26158,75.334,0.38272,0.22399,0.8963,-98.892
    20000 
    20001 > view matrix models
    20002 > #15,0.94204,-0.095512,-0.32162,95.426,0.060553,0.99128,-0.11702,39.204,0.33,0.090761,0.93961,-70.173,#16,0.92259,-0.14354,-0.35808,116.93,0.048451,0.96396,-0.26158,75.293,0.38272,0.22399,0.8963,-98.858
    20003 
    20004 > view matrix models
    20005 > #15,0.94204,-0.095512,-0.32162,95.405,0.060553,0.99128,-0.11702,39.246,0.33,0.090761,0.93961,-70.195,#16,0.92259,-0.14354,-0.35808,116.91,0.048451,0.96396,-0.26158,75.335,0.38272,0.22399,0.8963,-98.88
    20006 
    20007 > select subtract #16
    20008 
    20009 209 atoms, 208 bonds, 15 residues, 1 model selected 
    20010 
    20011 > select subtract #15
    20012 
    20013 Nothing selected 
    20014 
    20015 > close #87-90
    20016 
    20017 > combine #13-18,57
    20018 
    20019 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20020 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20021 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20022 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20023 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20024 to 'q' 
    20025 
    20026 > combine #13-18,57
    20027 
    20028 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20029 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20030 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20031 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20032 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20033 to 'q' 
    20034 
    20035 > combine #13-18,57
    20036 
    20037 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20038 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20039 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20040 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20041 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20042 to 'q' 
    20043 
    20044 > combine #13-18,57
    20045 
    20046 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20047 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20048 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20049 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20050 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20051 to 'q' 
    20052 
    20053 > mmaker #87/9 to #83/9 pairing ss
    20054 
    20055 Parameters 
    20056 --- 
    20057 Chain pairing | ss 
    20058 Alignment algorithm | Needleman-Wunsch 
    20059 Similarity matrix | BLOSUM-62 
    20060 SS fraction | 0.3 
    20061 Gap open (HH/SS/other) | 18/18/6 
    20062 Gap extend | 1 
    20063 SS matrix |  |  | H | S | O 
    20064 ---|---|---|--- 
    20065 H | 6 | -9 | -6 
    20066 S |  | 6 | -6 
    20067 O |  |  | 4 
    20068 Iteration cutoff | 2 
    20069  
    20070 Matchmaker combination, chain 9 (#83) with combination, chain 9 (#87),
    20071 sequence alignment score = 674.3 
    20072 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    20073 0.000) 
    20074  
    20075 
    20076 > mmaker #88/9 to #84/9 pairing ss
    20077 
    20078 Parameters 
    20079 --- 
    20080 Chain pairing | ss 
    20081 Alignment algorithm | Needleman-Wunsch 
    20082 Similarity matrix | BLOSUM-62 
    20083 SS fraction | 0.3 
    20084 Gap open (HH/SS/other) | 18/18/6 
    20085 Gap extend | 1 
    20086 SS matrix |  |  | H | S | O 
    20087 ---|---|---|--- 
    20088 H | 6 | -9 | -6 
    20089 S |  | 6 | -6 
    20090 O |  |  | 4 
    20091 Iteration cutoff | 2 
    20092  
    20093 Matchmaker combination, chain 9 (#84) with combination, chain 9 (#88),
    20094 sequence alignment score = 674.3 
    20095 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    20096 0.000) 
    20097  
    20098 
    20099 > mmaker #89/9 to #85/9 pairing ss
    20100 
    20101 Parameters 
    20102 --- 
    20103 Chain pairing | ss 
    20104 Alignment algorithm | Needleman-Wunsch 
    20105 Similarity matrix | BLOSUM-62 
    20106 SS fraction | 0.3 
    20107 Gap open (HH/SS/other) | 18/18/6 
    20108 Gap extend | 1 
    20109 SS matrix |  |  | H | S | O 
    20110 ---|---|---|--- 
    20111 H | 6 | -9 | -6 
    20112 S |  | 6 | -6 
    20113 O |  |  | 4 
    20114 Iteration cutoff | 2 
    20115  
    20116 Matchmaker combination, chain 9 (#85) with combination, chain 9 (#89),
    20117 sequence alignment score = 674.3 
    20118 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    20119 0.000) 
    20120  
    20121 
    20122 > mmaker #90/9 to #86/9 pairing ss
    20123 
    20124 Parameters 
    20125 --- 
    20126 Chain pairing | ss 
    20127 Alignment algorithm | Needleman-Wunsch 
    20128 Similarity matrix | BLOSUM-62 
    20129 SS fraction | 0.3 
    20130 Gap open (HH/SS/other) | 18/18/6 
    20131 Gap extend | 1 
    20132 SS matrix |  |  | H | S | O 
    20133 ---|---|---|--- 
    20134 H | 6 | -9 | -6 
    20135 S |  | 6 | -6 
    20136 O |  |  | 4 
    20137 Iteration cutoff | 2 
    20138  
    20139 Matchmaker combination, chain 9 (#86) with combination, chain 9 (#90),
    20140 sequence alignment score = 674.3 
    20141 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    20142 0.000) 
    20143  
    20144 
    20145 > select add #87
    20146 
    20147 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20148 
    20149 > color #87 #fffc79ff
    20150 
    20151 > color #88 #76d6ffff
    20152 
    20153 > color #89 #ff8ad8ff
    20154 
    20155 > color #90 #d4fb79ff
    20156 
    20157 > color #90 #73fa79ff
    20158 
    20159 > color #90 #531b93ff
    20160 
    20161 > select clear
    20162 
    20163 > select add #87
    20164 
    20165 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20166 
    20167 > ui mousemode right "rotate selected models"
    20168 
    20169 > view matrix models
    20170 > #87,0.92576,0.37803,-0.0072894,-65.192,-0.37722,0.92212,-0.086067,54.356,-0.025815,0.082428,0.99626,-12.32
    20171 
    20172 > show #!9 models
    20173 
    20174 > hide #!9 models
    20175 
    20176 > select add #57
    20177 
    20178 2788 atoms, 2781 bonds, 5 pseudobonds, 180 residues, 4 models selected 
    20179 
    20180 > select add #15
    20181 
    20182 2997 atoms, 2989 bonds, 5 pseudobonds, 195 residues, 5 models selected 
    20183 
    20184 > select subtract #15
    20185 
    20186 2788 atoms, 2781 bonds, 5 pseudobonds, 180 residues, 4 models selected 
    20187 
    20188 > select add #14
    20189 
    20190 3049 atoms, 3041 bonds, 6 pseudobonds, 197 residues, 6 models selected 
    20191 
    20192 > view matrix models
    20193 > #14,0.84928,0.28755,0.44276,-113.38,-0.37287,0.92042,0.11744,42.929,-0.37376,-0.26484,0.88891,150.65,#57,0.90161,0.39865,0.16785,-95.448,-0.41029,0.91108,0.040056,65.927,-0.13696,-0.10498,0.985,51.352,#87,0.91413,0.40338,-0.04065,-62.086,-0.4045,0.90065,-0.15876,79.721,-0.027429,0.16157,0.98648,-28.796
    20194 
    20195 > undo
    20196 
    20197 > select subtract #87
    20198 
    20199 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    20200 
    20201 > view matrix models
    20202 > #14,0.84805,0.25851,0.46258,-111.4,-0.37838,0.90655,0.18708,32.295,-0.37099,-0.33368,0.86662,168.77,#57,0.90735,0.37388,0.19216,-96.594,-0.39853,0.9105,0.11029,48.917,-0.13373,-0.17666,0.97515,67.7
    20203 
    20204 > view matrix models
    20205 > #14,0.86415,0.37462,0.336,-115.03,-0.4251,0.90076,0.089018,61.505,-0.26931,-0.21976,0.93765,110.96,#57,0.88441,0.46432,0.047055,-83.577,-0.46585,0.88439,0.02894,83.389,-0.028177,-0.047515,0.99847,14.823
    20206 
    20207 > view matrix models
    20208 > #14,0.85544,0.39162,0.33892,-117.52,-0.44147,0.89354,0.081804,67.622,-0.2708,-0.2196,0.93725,111.3,#57,0.87523,0.48122,0.048953,-85.781,-0.48279,0.87531,0.027258,88.971,-0.029732,-0.047491,0.99843,15.129
    20209 
    20210 > ui mousemode right "translate selected models"
    20211 
    20212 [Repeated 1 time(s)]
    20213 
    20214 > view matrix models
    20215 > #14,0.85544,0.39162,0.33892,-119.84,-0.44147,0.89354,0.081804,68.815,-0.2708,-0.2196,0.93725,110.52,#57,0.87523,0.48122,0.048953,-88.098,-0.48279,0.87531,0.027258,90.164,-0.029732,-0.047491,0.99843,14.351
    20216 
    20217 > view matrix models
    20218 > #14,0.85544,0.39162,0.33892,-120.19,-0.44147,0.89354,0.081804,68.103,-0.2708,-0.2196,0.93725,110.9,#57,0.87523,0.48122,0.048953,-88.449,-0.48279,0.87531,0.027258,89.451,-0.029732,-0.047491,0.99843,14.732
    20219 
    20220 > select subtract #57
    20221 
    20222 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    20223 
    20224 > select subtract #14
    20225 
    20226 Nothing selected 
    20227 
    20228 > select add #13
    20229 
    20230 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    20231 
    20232 > ui mousemode right "rotate selected models"
    20233 
    20234 > view matrix models
    20235 > #13,0.97468,0.22279,0.019089,-42.342,-0.22009,0.97094,-0.094031,37.846,-0.039484,0.087449,0.99539,-11.887
    20236 
    20237 > view matrix models
    20238 > #13,0.97535,0.16934,-0.14146,1.6225,-0.16444,0.98533,0.04577,-3.9376,0.14714,-0.02138,0.98888,-21.726
    20239 
    20240 > view matrix models
    20241 > #13,0.97672,0.16272,-0.13982,2.6253,-0.16376,0.98649,0.0041316,3.7416,0.1386,0.018861,0.99017,-29.968
    20242 
    20243 > select clear
    20244 
    20245 > select add #14
    20246 
    20247 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    20248 
    20249 > select subtract #14
    20250 
    20251 Nothing selected 
    20252 
    20253 > select add #16
    20254 
    20255 241 atoms, 240 bonds, 15 residues, 1 model selected 
    20256 
    20257 > select subtract #16
    20258 
    20259 Nothing selected 
    20260 
    20261 > select add #17
    20262 
    20263 257 atoms, 259 bonds, 15 residues, 1 model selected 
    20264 
    20265 > select subtract #17
    20266 
    20267 Nothing selected 
    20268 
    20269 > select add #18
    20270 
    20271 1330 atoms, 1329 bonds, 1 pseudobond, 84 residues, 2 models selected 
    20272 
    20273 > select subtract #18
    20274 
    20275 Nothing selected 
    20276 
    20277 > select add #13
    20278 
    20279 96 atoms, 95 bonds, 1 pseudobond, 8 residues, 2 models selected 
    20280 
    20281 > view matrix models
    20282 > #13,0.94349,0.30778,-0.12289,-28.985,-0.31161,0.95012,-0.012794,45.38,0.11282,0.050366,0.99234,-32.827
    20283 
    20284 > ui mousemode right "translate selected models"
    20285 
    20286 > view matrix models
    20287 > #13,0.94349,0.30778,-0.12289,-28.087,-0.31161,0.95012,-0.012794,44.861,0.11282,0.050366,0.99234,-32.667
    20288 
    20289 > ui mousemode right "rotate selected models"
    20290 
    20291 > view matrix models
    20292 > #13,0.93901,0.30442,-0.15995,-19.178,-0.28039,0.94706,0.15639,6.46,0.19909,-0.102,0.97466,-9.758
    20293 
    20294 > select clear
    20295 
    20296 > hide #!87 models
    20297 
    20298 > hide #!88 models
    20299 
    20300 > hide #!89 models
    20301 
    20302 > hide #!90 models
    20303 
    20304 > combine #13-18,57
    20305 
    20306 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20307 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20308 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20309 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20310 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20311 to 'q' 
    20312 
    20313 > combine #13-18,57
    20314 
    20315 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20316 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20317 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20318 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20319 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20320 to 'q' 
    20321 
    20322 > combine #13-18,57
    20323 
    20324 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20325 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20326 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20327 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20328 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20329 to 'q' 
    20330 
    20331 > combine #13-18,57
    20332 
    20333 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20334 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20335 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20336 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20337 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20338 to 'q' 
    20339 
    20340 > mmaker #91/9 to #87/9 pairing ss
    20341 
    20342 Parameters 
    20343 --- 
    20344 Chain pairing | ss 
    20345 Alignment algorithm | Needleman-Wunsch 
    20346 Similarity matrix | BLOSUM-62 
    20347 SS fraction | 0.3 
    20348 Gap open (HH/SS/other) | 18/18/6 
    20349 Gap extend | 1 
    20350 SS matrix |  |  | H | S | O 
    20351 ---|---|---|--- 
    20352 H | 6 | -9 | -6 
    20353 S |  | 6 | -6 
    20354 O |  |  | 4 
    20355 Iteration cutoff | 2 
    20356  
    20357 Matchmaker combination, chain 9 (#87) with combination, chain 9 (#91),
    20358 sequence alignment score = 674.3 
    20359 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    20360 0.000) 
    20361  
    20362 
    20363 > mmaker #92/9 to #88/9 pairing ss
    20364 
    20365 Parameters 
    20366 --- 
    20367 Chain pairing | ss 
    20368 Alignment algorithm | Needleman-Wunsch 
    20369 Similarity matrix | BLOSUM-62 
    20370 SS fraction | 0.3 
    20371 Gap open (HH/SS/other) | 18/18/6 
    20372 Gap extend | 1 
    20373 SS matrix |  |  | H | S | O 
    20374 ---|---|---|--- 
    20375 H | 6 | -9 | -6 
    20376 S |  | 6 | -6 
    20377 O |  |  | 4 
    20378 Iteration cutoff | 2 
    20379  
    20380 Matchmaker combination, chain 9 (#88) with combination, chain 9 (#92),
    20381 sequence alignment score = 674.3 
    20382 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    20383 0.000) 
    20384  
    20385 
    20386 > mmaker #93/9 to #89/9 pairing ss
    20387 
    20388 Parameters 
    20389 --- 
    20390 Chain pairing | ss 
    20391 Alignment algorithm | Needleman-Wunsch 
    20392 Similarity matrix | BLOSUM-62 
    20393 SS fraction | 0.3 
    20394 Gap open (HH/SS/other) | 18/18/6 
    20395 Gap extend | 1 
    20396 SS matrix |  |  | H | S | O 
    20397 ---|---|---|--- 
    20398 H | 6 | -9 | -6 
    20399 S |  | 6 | -6 
    20400 O |  |  | 4 
    20401 Iteration cutoff | 2 
    20402  
    20403 Matchmaker combination, chain 9 (#89) with combination, chain 9 (#93),
    20404 sequence alignment score = 674.3 
    20405 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    20406 0.000) 
    20407  
    20408 
    20409 > mmaker #94/9 to #90/9 pairing ss
    20410 
    20411 Parameters 
    20412 --- 
    20413 Chain pairing | ss 
    20414 Alignment algorithm | Needleman-Wunsch 
    20415 Similarity matrix | BLOSUM-62 
    20416 SS fraction | 0.3 
    20417 Gap open (HH/SS/other) | 18/18/6 
    20418 Gap extend | 1 
    20419 SS matrix |  |  | H | S | O 
    20420 ---|---|---|--- 
    20421 H | 6 | -9 | -6 
    20422 S |  | 6 | -6 
    20423 O |  |  | 4 
    20424 Iteration cutoff | 2 
    20425  
    20426 Matchmaker combination, chain 9 (#90) with combination, chain 9 (#94),
    20427 sequence alignment score = 674.3 
    20428 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    20429 0.000) 
    20430  
    20431 
    20432 > color #91 #fffc79ff
    20433 
    20434 > color #92 #7a81ffff
    20435 
    20436 > color #93 #73fdffff
    20437 
    20438 > color #94 #011993ff
    20439 
    20440 > select add #91
    20441 
    20442 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20443 
    20444 > view matrix models
    20445 > #91,0.93402,0.29446,-0.20222,-8.0654,-0.25784,0.94755,0.18887,-29.565,0.24723,-0.12426,0.96096,-10.065
    20446 
    20447 > select add #93
    20448 
    20449 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20450 
    20451 > select subtract #91
    20452 
    20453 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20454 
    20455 > view matrix models
    20456 > #93,0.94425,0.2767,-0.17843,-11.989,-0.258,0.95852,0.12112,-44.893,0.20454,-0.068336,0.97647,-17.278
    20457 
    20458 > select add #91
    20459 
    20460 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20461 
    20462 > select subtract #93
    20463 
    20464 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20465 
    20466 > view matrix models
    20467 > #91,0.95014,0.24836,-0.18854,-3.0685,-0.2138,0.95903,0.18591,-40.508,0.22698,-0.13633,0.96431,-3.8181
    20468 
    20469 > undo
    20470 
    20471 > ui mousemode right "translate selected models"
    20472 
    20473 > view matrix models
    20474 > #91,0.93402,0.29446,-0.20222,-7.5434,-0.25784,0.94755,0.18887,-28.876,0.24723,-0.12426,0.96096,-10.494
    20475 
    20476 > view matrix models
    20477 > #91,0.93402,0.29446,-0.20222,-7.7595,-0.25784,0.94755,0.18887,-29.602,0.24723,-0.12426,0.96096,-10.746
    20478 
    20479 > view matrix models
    20480 > #91,0.93402,0.29446,-0.20222,-8.8758,-0.25784,0.94755,0.18887,-29.546,0.24723,-0.12426,0.96096,-10.903
    20481 
    20482 > view matrix models
    20483 > #91,0.93402,0.29446,-0.20222,-8.5998,-0.25784,0.94755,0.18887,-28.973,0.24723,-0.12426,0.96096,-10.908
    20484 
    20485 > ui mousemode right "rotate selected models"
    20486 
    20487 > view matrix models
    20488 > #91,0.94909,0.23455,-0.21026,4.2539,-0.19767,0.96318,0.18222,-43.39,0.24526,-0.13138,0.96051,-8.7327
    20489 
    20490 > select add #93
    20491 
    20492 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20493 
    20494 > select subtract #91
    20495 
    20496 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20497 
    20498 > view matrix models
    20499 > #93,0.95174,0.24128,-0.18966,-2.8066,-0.21456,0.96498,0.15091,-61.092,0.21943,-0.10293,0.97018,-10.763
    20500 
    20501 > view matrix models
    20502 > #93,0.96296,0.18609,-0.19515,9.1817,-0.15233,0.97258,0.17575,-80.329,0.22251,-0.13952,0.9649,-1.6145
    20503 
    20504 > view matrix models
    20505 > #93,0.95991,0.2034,-0.19289,5.2202,-0.17191,0.97068,0.16803,-74.412,0.22141,-0.12814,0.96673,-4.4687
    20506 
    20507 > select add #92
    20508 
    20509 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20510 
    20511 > select subtract #93
    20512 
    20513 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20514 
    20515 > view matrix models
    20516 > #92,0.91923,0.33547,-0.2061,-12.937,-0.31031,0.93948,0.14518,40.554,0.24233,-0.069497,0.9677,-24.539
    20517 
    20518 > select add #94
    20519 
    20520 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20521 
    20522 > select subtract #92
    20523 
    20524 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20525 
    20526 > view matrix models
    20527 > #94,0.90305,0.37943,-0.20132,-19.381,-0.35538,0.92326,0.14594,77.768,0.24124,-0.060248,0.96859,-26.83
    20528 
    20529 > view matrix models
    20530 > #94,0.87227,0.46549,-0.14986,-44.029,-0.44474,0.88255,0.1527,103.96,0.20334,-0.066553,0.97684,-19.407
    20531 
    20532 > undo
    20533 
    20534 > select add #92
    20535 
    20536 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20537 
    20538 > select subtract #94
    20539 
    20540 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20541 
    20542 > view matrix models
    20543 > #92,0.91701,0.34441,-0.2012,-15.6,-0.31495,0.93473,0.16457,38.721,0.24475,-0.087541,0.96563,-20.314
    20544 
    20545 > undo
    20546 
    20547 > view matrix models
    20548 > #92,0.91847,0.33478,-0.21056,-11.725,-0.308,0.93946,0.15019,39.094,0.24809,-0.073087,0.96598,-24.491
    20549 
    20550 > select add #94
    20551 
    20552 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20553 
    20554 > select subtract #92
    20555 
    20556 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20557 
    20558 > view matrix models
    20559 > #94,0.89877,0.38012,-0.21846,-15.248,-0.35538,0.92345,0.14472,77.967,0.25675,-0.052435,0.96505,-31.08
    20560 
    20561 > view matrix models
    20562 > #94,0.91354,0.33805,-0.22623,-6.6327,-0.31104,0.93895,0.14703,64.95,0.26212,-0.063949,0.96291,-28.985
    20563 
    20564 > view matrix models
    20565 > #94,0.92943,0.32935,-0.16639,-19.751,-0.31093,0.94185,0.12745,68.168,0.19869,-0.066721,0.97779,-18.628
    20566 
    20567 > view matrix models
    20568 > #94,0.92699,0.3218,-0.19271,-12.186,-0.30179,0.94497,0.12629,65.831,0.22274,-0.058909,0.9731,-24.353
    20569 
    20570 > select add #93
    20571 
    20572 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20573 
    20574 > select subtract #94
    20575 
    20576 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20577 
    20578 > view matrix models
    20579 > #93,0.95173,0.24625,-0.1832,-5.2853,-0.21639,0.96166,0.16846,-63.459,0.21766,-0.12069,0.96853,-5.8543
    20580 
    20581 > view matrix models
    20582 > #93,0.94137,0.27361,-0.19736,-6.8804,-0.24665,0.95731,0.15071,-52.813,0.23017,-0.0932,0.96868,-14.924
    20583 
    20584 > view matrix models
    20585 > #93,0.95232,0.24886,-0.17651,-7.365,-0.22546,0.96379,0.14238,-56.917,0.20555,-0.095791,0.97395,-10.441
    20586 
    20587 > select add #91
    20588 
    20589 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20590 
    20591 > select subtract #93
    20592 
    20593 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20594 
    20595 > view matrix models
    20596 > #91,0.94128,0.26743,-0.20612,-2.8357,-0.23012,0.95484,0.18796,-36.067,0.24707,-0.12949,0.96031,-9.5035
    20597 
    20598 > ui mousemode right "translate selected models"
    20599 
    20600 > view matrix models
    20601 > #91,0.94128,0.26743,-0.20612,-3.8227,-0.23012,0.95484,0.18796,-37.172,0.24707,-0.12949,0.96031,-9.4586
    20602 
    20603 > view matrix models
    20604 > #91,0.94128,0.26743,-0.20612,-3.2183,-0.23012,0.95484,0.18796,-36.485,0.24707,-0.12949,0.96031,-9.9114
    20605 
    20606 > select add #94
    20607 
    20608 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20609 
    20610 > select subtract #91
    20611 
    20612 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20613 
    20614 > view matrix models
    20615 > #94,0.92699,0.3218,-0.19271,-12.118,-0.30179,0.94497,0.12629,66.542,0.22274,-0.058909,0.9731,-24.384
    20616 
    20617 > view matrix models
    20618 > #94,0.92699,0.3218,-0.19271,-12.581,-0.30179,0.94497,0.12629,66.212,0.22274,-0.058909,0.9731,-22.601
    20619 
    20620 > ui mousemode right "rotate selected models"
    20621 
    20622 > view matrix models
    20623 > #94,0.91755,0.33597,-0.21265,-10.061,-0.31223,0.93996,0.1378,67.183,0.24618,-0.060039,0.96736,-25.869
    20624 
    20625 > undo
    20626 
    20627 > ui mousemode right "translate selected models"
    20628 
    20629 > view matrix models
    20630 > #94,0.92699,0.3218,-0.19271,-11.851,-0.30179,0.94497,0.12629,66.321,0.22274,-0.058909,0.9731,-24.95
    20631 
    20632 > ui mousemode right "rotate selected models"
    20633 
    20634 > view matrix models
    20635 > #94,0.92238,0.31704,-0.22069,-4.1806,-0.29883,0.94766,0.11242,67.873,0.24478,-0.037746,0.96884,-33.538
    20636 
    20637 > ui mousemode right "translate selected models"
    20638 
    20639 > view matrix models
    20640 > #94,0.92238,0.31704,-0.22069,-4.599,-0.29883,0.94766,0.11242,67.759,0.24478,-0.037746,0.96884,-32.113
    20641 
    20642 > select add #91
    20643 
    20644 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20645 
    20646 > select subtract #94
    20647 
    20648 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20649 
    20650 > view matrix models
    20651 > #91,0.94128,0.26743,-0.20612,-3.0211,-0.23012,0.95484,0.18796,-36.351,0.24707,-0.12949,0.96031,-9.5153
    20652 
    20653 > undo
    20654 
    20655 > ui mousemode right "rotate selected models"
    20656 
    20657 > view matrix models
    20658 > #91,0.94097,0.27134,-0.20234,-4.8476,-0.23887,0.95588,0.17096,-31.571,0.2398,-0.11254,0.96428,-13.286
    20659 
    20660 > select add #94
    20661 
    20662 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20663 
    20664 > select clear
    20665 
    20666 > select add #94
    20667 
    20668 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20669 
    20670 > view matrix models
    20671 > #94,0.93529,0.27337,-0.22472,4.0154,-0.25644,0.96117,0.10196,58.169,0.24386,-0.037734,0.96908,-31.978
    20672 
    20673 > undo
    20674 
    20675 > ui mousemode right "translate selected models"
    20676 
    20677 > view matrix models
    20678 > #94,0.92238,0.31704,-0.22069,-5.3357,-0.29883,0.94766,0.11242,68.29,0.24478,-0.037746,0.96884,-32.119
    20679 
    20680 > select add #91
    20681 
    20682 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20683 
    20684 > select subtract #94
    20685 
    20686 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20687 
    20688 > view matrix models
    20689 > #91,0.94097,0.27134,-0.20234,-4.9627,-0.23887,0.95588,0.17096,-31.585,0.2398,-0.11254,0.96428,-12.991
    20690 
    20691 > undo
    20692 
    20693 > ui mousemode right "rotate selected models"
    20694 
    20695 > view matrix models
    20696 > #91,0.94232,0.26581,-0.20341,-3.5865,-0.23697,0.959,0.15544,-29.579,0.23639,-0.098267,0.96668,-16.481
    20697 
    20698 > select clear
    20699 
    20700 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    20701 > MRCLaboratoryofMolecularBiology/Documents/Carter
    20702 > Lab/Diorge/Membranes/Fit14-20.cxs"
    20703 
    20704 > select add #91
    20705 
    20706 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20707 
    20708 > view matrix models
    20709 > #91,0.94407,0.25831,-0.20497,-1.8383,-0.2346,0.96295,0.13302,-26.493,0.23174,-0.077497,0.96969,-21.096
    20710 
    20711 > ui mousemode right "translate selected models"
    20712 
    20713 > view matrix models
    20714 > #91,0.94407,0.25831,-0.20497,-2.1126,-0.2346,0.96295,0.13302,-26.404,0.23174,-0.077497,0.96969,-20.34
    20715 
    20716 > view matrix models
    20717 > #91,0.94407,0.25831,-0.20497,-1.5449,-0.2346,0.96295,0.13302,-26.516,0.23174,-0.077497,0.96969,-20.193
    20718 
    20719 > view matrix models
    20720 > #91,0.94407,0.25831,-0.20497,-1.5476,-0.2346,0.96295,0.13302,-26.631,0.23174,-0.077497,0.96969,-20.182
    20721 
    20722 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    20723 > MRCLaboratoryofMolecularBiology/Documents/Carter
    20724 > Lab/Diorge/Membranes/Fit14-20.cxs"
    20725 
    20726 > select add #94
    20727 
    20728 5182 atoms, 5172 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    20729 
    20730 > select subtract #91
    20731 
    20732 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20733 
    20734 > ui mousemode right "rotate selected models"
    20735 
    20736 > view matrix models
    20737 > #94,0.91922,0.32661,-0.21992,-7.1349,-0.30857,0.94448,0.1129,70.898,0.24458,-0.035921,0.96896,-32.537
    20738 
    20739 > hide #!8 models
    20740 
    20741 > select clear
    20742 
    20743 > ui windowfill toggle
    20744 
    20745 > ui mousemode right "translate selected models"
    20746 
    20747 > ui windowfill toggle
    20748 
    20749 > select add #94
    20750 
    20751 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20752 
    20753 > ui windowfill toggle
    20754 
    20755 > view matrix models
    20756 > #94,0.91922,0.32661,-0.21992,-6.8999,-0.30857,0.94448,0.1129,70.724,0.24458,-0.035921,0.96896,-32.45
    20757 
    20758 > view matrix models
    20759 > #94,0.91922,0.32661,-0.21992,-6.9092,-0.30857,0.94448,0.1129,71.134,0.24458,-0.035921,0.96896,-32.47
    20760 
    20761 > ui windowfill toggle
    20762 
    20763 > show #!8 models
    20764 
    20765 > select add #13
    20766 
    20767 2687 atoms, 2681 bonds, 5 pseudobonds, 175 residues, 4 models selected 
    20768 
    20769 > select subtract #13
    20770 
    20771 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    20772 
    20773 > select add #14
    20774 
    20775 2852 atoms, 2846 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    20776 
    20777 > select add #15
    20778 
    20779 3061 atoms, 3054 bonds, 5 pseudobonds, 199 residues, 5 models selected 
    20780 
    20781 > select subtract #15
    20782 
    20783 2852 atoms, 2846 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    20784 
    20785 > select add #15
    20786 
    20787 3061 atoms, 3054 bonds, 5 pseudobonds, 199 residues, 5 models selected 
    20788 
    20789 > select subtract #15
    20790 
    20791 2852 atoms, 2846 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    20792 
    20793 > select add #16
    20794 
    20795 3093 atoms, 3086 bonds, 5 pseudobonds, 199 residues, 5 models selected 
    20796 
    20797 > select subtract #16
    20798 
    20799 2852 atoms, 2846 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    20800 
    20801 > select add #17
    20802 
    20803 3109 atoms, 3105 bonds, 5 pseudobonds, 199 residues, 5 models selected 
    20804 
    20805 > select subtract #17
    20806 
    20807 2852 atoms, 2846 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    20808 
    20809 > select add #18
    20810 
    20811 4182 atoms, 4175 bonds, 6 pseudobonds, 268 residues, 6 models selected 
    20812 
    20813 > select subtract #18
    20814 
    20815 2852 atoms, 2846 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    20816 
    20817 > select add #57
    20818 
    20819 3049 atoms, 3041 bonds, 6 pseudobonds, 197 residues, 6 models selected 
    20820 
    20821 > select subtract #94
    20822 
    20823 458 atoms, 455 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    20824 
    20825 > ui mousemode right "rotate selected models"
    20826 
    20827 > view matrix models
    20828 > #14,0.82373,0.41545,0.38584,-128.1,-0.48613,0.86773,0.10352,78.158,-0.2918,-0.27284,0.91674,130.3,#57,0.85328,0.51232,0.097177,-100.14,-0.51901,0.85243,0.063266,94.508,-0.050425,-0.10442,0.99325,32.006
    20829 
    20830 > ui mousemode right "rotate selected models"
    20831 
    20832 > view matrix models
    20833 > #14,0.81467,0.43167,0.38728,-130.07,-0.50234,0.85895,0.099316,84.004,-0.28978,-0.27545,0.9166,130.49,#57,0.84349,0.52815,0.097882,-101.76,-0.53497,0.84239,0.064697,99.508,-0.048285,-0.10694,0.99309,32.16
    20834 
    20835 > ui mousemode right "translate selected models"
    20836 
    20837 > view matrix models
    20838 > #14,0.81467,0.43167,0.38728,-130.46,-0.50234,0.85895,0.099316,84.016,-0.28978,-0.27545,0.9166,130.71,#57,0.84349,0.52815,0.097882,-102.16,-0.53497,0.84239,0.064697,99.52,-0.048285,-0.10694,0.99309,32.381
    20839 
    20840 > ui mousemode right "rotate selected models"
    20841 
    20842 > view matrix models
    20843 > #14,0.84042,0.47172,0.2668,-120.89,-0.52454,0.83178,0.18166,78.327,-0.13622,-0.29262,0.94648,98.698,#57,0.83755,0.54551,-0.030359,-79.998,-0.53539,0.83055,0.15341,85.038,0.1089,-0.11224,0.9877,3.8629
    20844 
    20845 > view matrix models
    20846 > #14,0.82137,0.43392,0.37022,-129.01,-0.48192,0.87513,0.04349,87.326,-0.30512,-0.21414,0.92793,118.44,#57,0.8459,0.52738,0.079592,-98.967,-0.5293,0.84843,0.0036487,108.91,-0.065604,-0.045214,0.99682,21.778
    20847 
    20848 > undo
    20849 
    20850 [Repeated 3 time(s)]
    20851 
    20852 > redo
    20853 
    20854 > select #8
    20855 
    20856 4 models selected 
    20857 
    20858 > select clear
    20859 
    20860 > select add #57
    20861 
    20862 197 atoms, 195 bonds, 1 pseudobond, 13 residues, 2 models selected 
    20863 
    20864 > select subtract #57
    20865 
    20866 Nothing selected 
    20867 
    20868 > select add #17
    20869 
    20870 257 atoms, 259 bonds, 15 residues, 1 model selected 
    20871 
    20872 > select subtract #17
    20873 
    20874 Nothing selected 
    20875 
    20876 > select add #16
    20877 
    20878 241 atoms, 240 bonds, 15 residues, 1 model selected 
    20879 
    20880 > select subtract #16
    20881 
    20882 Nothing selected 
    20883 
    20884 > select add #15
    20885 
    20886 209 atoms, 208 bonds, 15 residues, 1 model selected 
    20887 
    20888 > select subtract #15
    20889 
    20890 Nothing selected 
    20891 
    20892 > select add #14
    20893 
    20894 261 atoms, 260 bonds, 1 pseudobond, 17 residues, 2 models selected 
    20895 
    20896 > ui mousemode right "translate selected models"
    20897 
    20898 > view matrix models
    20899 > #14,0.81467,0.43167,0.38728,-130.04,-0.50234,0.85895,0.099316,84.282,-0.28978,-0.27545,0.9166,130.41
    20900 
    20901 > view matrix models
    20902 > #14,0.81467,0.43167,0.38728,-130.1,-0.50234,0.85895,0.099316,84.075,-0.28978,-0.27545,0.9166,130.32
    20903 
    20904 > select clear
    20905 
    20906 > combine #13-18,57
    20907 
    20908 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20909 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20910 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20911 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20912 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20913 to 'q' 
    20914 
    20915 > combine #13-18,57
    20916 
    20917 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20918 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20919 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20920 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20921 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20922 to 'q' 
    20923 
    20924 > combine #13-18,57
    20925 
    20926 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20927 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20928 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20929 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20930 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20931 to 'q' 
    20932 
    20933 > combine #13-18,57
    20934 
    20935 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    20936 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    20937 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    20938 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    20939 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    20940 to 'q' 
    20941 
    20942 > mmaker #95/9 to #91/9 pairing ss
    20943 
    20944 Parameters 
    20945 --- 
    20946 Chain pairing | ss 
    20947 Alignment algorithm | Needleman-Wunsch 
    20948 Similarity matrix | BLOSUM-62 
    20949 SS fraction | 0.3 
    20950 Gap open (HH/SS/other) | 18/18/6 
    20951 Gap extend | 1 
    20952 SS matrix |  |  | H | S | O 
    20953 ---|---|---|--- 
    20954 H | 6 | -9 | -6 
    20955 S |  | 6 | -6 
    20956 O |  |  | 4 
    20957 Iteration cutoff | 2 
    20958  
    20959 Matchmaker combination, chain 9 (#91) with combination, chain 9 (#95),
    20960 sequence alignment score = 674.3 
    20961 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    20962 0.000) 
    20963  
    20964 
    20965 > mmaker #96/9 to #92/9 pairing ss
    20966 
    20967 Parameters 
    20968 --- 
    20969 Chain pairing | ss 
    20970 Alignment algorithm | Needleman-Wunsch 
    20971 Similarity matrix | BLOSUM-62 
    20972 SS fraction | 0.3 
    20973 Gap open (HH/SS/other) | 18/18/6 
    20974 Gap extend | 1 
    20975 SS matrix |  |  | H | S | O 
    20976 ---|---|---|--- 
    20977 H | 6 | -9 | -6 
    20978 S |  | 6 | -6 
    20979 O |  |  | 4 
    20980 Iteration cutoff | 2 
    20981  
    20982 Matchmaker combination, chain 9 (#92) with combination, chain 9 (#96),
    20983 sequence alignment score = 674.3 
    20984 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    20985 0.000) 
    20986  
    20987 
    20988 > mmaker #97/9 to #93/9 pairing ss
    20989 
    20990 Parameters 
    20991 --- 
    20992 Chain pairing | ss 
    20993 Alignment algorithm | Needleman-Wunsch 
    20994 Similarity matrix | BLOSUM-62 
    20995 SS fraction | 0.3 
    20996 Gap open (HH/SS/other) | 18/18/6 
    20997 Gap extend | 1 
    20998 SS matrix |  |  | H | S | O 
    20999 ---|---|---|--- 
    21000 H | 6 | -9 | -6 
    21001 S |  | 6 | -6 
    21002 O |  |  | 4 
    21003 Iteration cutoff | 2 
    21004  
    21005 Matchmaker combination, chain 9 (#93) with combination, chain 9 (#97),
    21006 sequence alignment score = 674.3 
    21007 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    21008 0.000) 
    21009  
    21010 
    21011 > mmaker #98/9 to #94/9 pairing ss
    21012 
    21013 Parameters 
    21014 --- 
    21015 Chain pairing | ss 
    21016 Alignment algorithm | Needleman-Wunsch 
    21017 Similarity matrix | BLOSUM-62 
    21018 SS fraction | 0.3 
    21019 Gap open (HH/SS/other) | 18/18/6 
    21020 Gap extend | 1 
    21021 SS matrix |  |  | H | S | O 
    21022 ---|---|---|--- 
    21023 H | 6 | -9 | -6 
    21024 S |  | 6 | -6 
    21025 O |  |  | 4 
    21026 Iteration cutoff | 2 
    21027  
    21028 Matchmaker combination, chain 9 (#94) with combination, chain 9 (#98),
    21029 sequence alignment score = 674.3 
    21030 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    21031 0.000) 
    21032  
    21033 
    21034 > hide #!90-94 target m
    21035 
    21036 > color #95 #fffc79ff
    21037 
    21038 > color #96 #73fdffff
    21039 
    21040 > color #97 #ff85ffff
    21041 
    21042 > color #98 #941751ff
    21043 
    21044 > color #98 #531b93ff
    21045 
    21046 > select clear
    21047 
    21048 > select add #98
    21049 
    21050 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21051 
    21052 > ui mousemode right "rotate selected models"
    21053 
    21054 > view matrix models
    21055 > #98,0.91348,0.32667,-0.24256,-1.2377,-0.30738,0.94465,0.11466,70.501,0.26659,-0.030183,0.96334,-37.108
    21056 
    21057 > select clear
    21058 
    21059 > select add #95
    21060 
    21061 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21062 
    21063 > ui mousemode right "translate selected models"
    21064 
    21065 [Repeated 1 time(s)]
    21066 
    21067 > view matrix models
    21068 > #95,0.94407,0.25831,-0.20497,-1.3927,-0.2346,0.96295,0.13302,-26.642,0.23174,-0.077497,0.96969,-20.165
    21069 
    21070 Drag select of 8 postprocess_masked330_onepf.mrc , 43 residues 
    21071 
    21072 > select clear
    21073 
    21074 > select add #95
    21075 
    21076 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21077 
    21078 > view matrix models
    21079 > #95,0.94407,0.25831,-0.20497,-1.2069,-0.2346,0.96295,0.13302,-26.654,0.23174,-0.077497,0.96969,-20.145
    21080 
    21081 > select clear
    21082 
    21083 [Repeated 1 time(s)]
    21084 
    21085 > select add #95
    21086 
    21087 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21088 
    21089 > view matrix models
    21090 > #95,0.94407,0.25831,-0.20497,-1.0561,-0.2346,0.96295,0.13302,-26.728,0.23174,-0.077497,0.96969,-20.13
    21091 
    21092 Drag select of 8 postprocess_masked330_onepf.mrc , 12 residues 
    21093 
    21094 > select clear
    21095 
    21096 > select add #98
    21097 
    21098 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21099 
    21100 > view matrix models
    21101 > #98,0.91348,0.32667,-0.24256,-0.961,-0.30738,0.94465,0.11466,70.45,0.26659,-0.030183,0.96334,-37.079
    21102 
    21103 > view matrix models
    21104 > #98,0.91348,0.32667,-0.24256,-0.57952,-0.30738,0.94465,0.11466,70.44,0.26659,-0.030183,0.96334,-36.919
    21105 
    21106 > undo
    21107 
    21108 > ui mousemode right "rotate selected models"
    21109 
    21110 > view matrix models
    21111 > #98,0.91743,0.32652,-0.22738,-4.7594,-0.30788,0.94455,0.11417,70.673,0.25205,-0.034742,0.96709,-33.839
    21112 
    21113 > ui mousemode right "translate selected models"
    21114 
    21115 > view matrix models
    21116 > #98,0.91743,0.32652,-0.22738,-4.9377,-0.30788,0.94455,0.11417,70.674,0.25205,-0.034742,0.96709,-34.096
    21117 
    21118 > select clear
    21119 
    21120 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    21121 > MRCLaboratoryofMolecularBiology/Documents/Carter
    21122 > Lab/Diorge/Membranes/Fit14-20.cxs"
    21123 
    21124 > select add #95
    21125 
    21126 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21127 
    21128 > ui mousemode right "rotate selected models"
    21129 
    21130 > view matrix models
    21131 > #95,0.9546,0.25747,-0.1498,-14.029,-0.23884,0.9621,0.13161,-25.393,0.17801,-0.089857,0.97992,-8.4947
    21132 
    21133 > ui mousemode right "translate selected models"
    21134 
    21135 > view matrix models
    21136 > #95,0.9546,0.25747,-0.1498,-14.364,-0.23884,0.9621,0.13161,-25.373,0.17801,-0.089857,0.97992,-8.3977
    21137 
    21138 > select clear
    21139 
    21140 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    21141 > MRCLaboratoryofMolecularBiology/Documents/Carter
    21142 > Lab/Diorge/Membranes/Fit14-20.cxs"
    21143 
    21144 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    21145 > MRCLaboratoryofMolecularBiology/Documents/Carter
    21146 > Lab/Diorge/Membranes/Fit14-20-1.pdb" #97 format pdb
    21147 
    21148 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    21149 > MRCLaboratoryofMolecularBiology/Documents/Carter
    21150 > Lab/Diorge/Membranes/Fit14-20-2.pdb" #95 format pdb
    21151 
    21152 > combine #13-18,57
    21153 
    21154 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    21155 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    21156 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    21157 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    21158 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    21159 to 'q' 
    21160 
    21161 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    21162 > MRCLaboratoryofMolecularBiology/Documents/Carter
    21163 > Lab/Diorge/Membranes/Fit14-20-3.pdb" #99 format pdb
    21164 
    21165 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    21166 > MRCLaboratoryofMolecularBiology/Documents/Carter
    21167 > Lab/Diorge/Membranes/Fit14-20-4.pdb" #96 format pdb
    21168 
    21169 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    21170 > MRCLaboratoryofMolecularBiology/Documents/Carter
    21171 > Lab/Diorge/Membranes/Fit14-20-5.pdb" #98 format pdb
    21172 
    21173 > hide #!8-99 target m
    21174 
    21175 > show #!9 models
    21176 
    21177 > ui tool show "Show Sequence Viewer"
    21178 
    21179 > sequence chain #9/r
    21180 
    21181 Alignment identifier is 9/r 
    21182 Drag select of 1 residues 
    21183 
    21184 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    21185 > MRCLaboratoryofMolecularBiology/Documents/Carter
    21186 > Lab/Diorge/Membranes/Fit14-20-stitched-refined-rechained-ss.pdb"
    21187 
    21188 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    21189 MRCLaboratoryofMolecularBiology/Documents/Carter
    21190 Lab/Diorge/Membranes/Fit14-20-stitched-refined-rechained-ss.pdb 
    21191 --- 
    21192 warning | PDB SEQRES record for chain b is incomplete. Ignoring input sequence
    21193 records as basis for sequence. 
    21194  
    21195 Chain information for Fit14-20-stitched-refined-rechained-ss.pdb #100 
    21196 --- 
    21197 Chain | Description 
    21198 A | No description available 
    21199 B C N | No description available 
    21200 G | No description available 
    21201 O W Y | No description available 
    21202 b | No description available 
    21203  
    21204 
    21205 > hide sel atoms
    21206 
    21207 > hide sel cartoons
    21208 
    21209 > hide sel atoms
    21210 
    21211 > select clear
    21212 
    21213 > hide #!9,100 atoms
    21214 
    21215 > show #!9,100 cartoons
    21216 
    21217 > ui mousemode right zoom
    21218 
    21219 > hide #!9 models
    21220 
    21221 > show #!8 models
    21222 
    21223 > select add #100
    21224 
    21225 12796 atoms, 12821 bonds, 5 pseudobonds, 820 residues, 2 models selected 
    21226 
    21227 > color sel bychain
    21228 
    21229 > show #!7 models
    21230 
    21231 > hide #!8 models
    21232 
    21233 > color zone #7 near sel distance 2.43
    21234 
    21235 > color zone #7 near sel distance 7.73
    21236 
    21237 [Repeated 1 time(s)]
    21238 
    21239 > color zone #7 near sel distance 7.59
    21240 
    21241 > color zone #7 near sel distance 1.99
    21242 
    21243 > show #!8 models
    21244 
    21245 > hide #!7 models
    21246 
    21247 > show #!99 models
    21248 
    21249 > show #!98 models
    21250 
    21251 > show #!97 models
    21252 
    21253 > show #!96 models
    21254 
    21255 > show #!95 models
    21256 
    21257 > hide #!95-100 target m
    21258 
    21259 > show #!100 models
    21260 
    21261 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    21262 > MRCLaboratoryofMolecularBiology/Documents/Carter
    21263 > Lab/Diorge/Membranes/Fit14-20.cxs"
    21264 
    21265 ——— End of log from Wed Jan 10 14:43:33 2024 ———
    21266 
    21267 opened ChimeraX session 
    21268 
    21269 > hide #!100 models
    21270 
    21271 > select add #57
    21272 
    21273 12993 atoms, 13016 bonds, 6 pseudobonds, 833 residues, 4 models selected 
    21274 
    21275 > show #!57 models
    21276 
    21277 > select subtract #57
    21278 
    21279 12796 atoms, 12821 bonds, 5 pseudobonds, 820 residues, 2 models selected 
    21280 
    21281 > show #!13-18 target m
    21282 
    21283 > select add #15
    21284 
    21285 13005 atoms, 13029 bonds, 5 pseudobonds, 835 residues, 3 models selected 
    21286 
    21287 > select add #16
    21288 
    21289 13246 atoms, 13269 bonds, 5 pseudobonds, 850 residues, 4 models selected 
    21290 
    21291 > ui mousemode right "rotate selected models"
    21292 
    21293 > view matrix models
    21294 > #15,0.9284,-0.065012,-0.36585,100.42,0.074433,0.99716,0.01169,9.9801,0.36405,-0.038085,0.9306,-48.231,#16,0.90629,-0.11968,-0.40537,124.38,0.06964,0.98825,-0.13607,41.529,0.41689,0.095085,0.90397,-80.14,#100,0.99846,0.034584,-0.043285,0.7636,-0.028882,0.9916,0.12605,-17.333,0.047281,-0.12461,0.99108,21.718
    21295 
    21296 > view matrix models
    21297 > #15,0.93408,-0.078145,-0.34841,98.61,0.068219,0.99684,-0.040687,21.576,0.35048,0.014237,0.93646,-57.639,#16,0.91302,-0.13018,-0.38658,121.57,0.060441,0.98042,-0.18741,55.03,0.4034,0.14774,0.90302,-88.319,#100,0.99946,0.019868,-0.026215,0.63687,-0.017859,0.99704,0.074756,-10.602,0.027623,-0.074247,0.99686,12.614
    21298 
    21299 > ui mousemode right "translate selected models"
    21300 
    21301 > view matrix models
    21302 > #15,0.93408,-0.078145,-0.34841,98.914,0.068219,0.99684,-0.040687,21.572,0.35048,0.014237,0.93646,-58.833,#16,0.91302,-0.13018,-0.38658,121.87,0.060441,0.98042,-0.18741,55.026,0.4034,0.14774,0.90302,-89.514,#100,0.99946,0.019868,-0.026215,0.9406,-0.017859,0.99704,0.074756,-10.606,0.027623,-0.074247,0.99686,11.42
    21303 
    21304 > ui mousemode right "rotate selected models"
    21305 
    21306 > view matrix models
    21307 > #15,0.92461,-0.034563,-0.37933,97.794,0.042229,0.99904,0.011903,15.704,0.37856,-0.027025,0.92518,-53.42,#16,0.90157,-0.091473,-0.42285,123.17,0.037491,0.99023,-0.13428,46.886,0.431,0.10521,0.8962,-84.591,#100,0.99633,0.066116,-0.054441,-3.6766,-0.059468,0.99149,0.11579,-9.4057,0.061634,-0.11213,0.99178,14.718
    21308 
    21309 > ui mousemode right "translate selected models"
    21310 
    21311 > view matrix models
    21312 > #15,0.92461,-0.034563,-0.37933,98.13,0.042229,0.99904,0.011903,15.47,0.37856,-0.027025,0.92518,-54.759,#16,0.90157,-0.091473,-0.42285,123.5,0.037491,0.99023,-0.13428,46.652,0.431,0.10521,0.8962,-85.93,#100,0.99633,0.066116,-0.054441,-3.3409,-0.059468,0.99149,0.11579,-9.64,0.061634,-0.11213,0.99178,13.38
    21313 
    21314 > view matrix models
    21315 > #15,0.92461,-0.034563,-0.37933,99.153,0.042229,0.99904,0.011903,14.928,0.37856,-0.027025,0.92518,-54.181,#16,0.90157,-0.091473,-0.42285,124.52,0.037491,0.99023,-0.13428,46.109,0.431,0.10521,0.8962,-85.352,#100,0.99633,0.066116,-0.054441,-2.3178,-0.059468,0.99149,0.11579,-10.182,0.061634,-0.11213,0.99178,13.957
    21316 
    21317 > view matrix models
    21318 > #15,0.92461,-0.034563,-0.37933,99.101,0.042229,0.99904,0.011903,14.676,0.37856,-0.027025,0.92518,-54.124,#16,0.90157,-0.091473,-0.42285,124.47,0.037491,0.99023,-0.13428,45.858,0.431,0.10521,0.8962,-85.294,#100,0.99633,0.066116,-0.054441,-2.3697,-0.059468,0.99149,0.11579,-10.434,0.061634,-0.11213,0.99178,14.015
    21319 
    21320 > select subtract #15
    21321 
    21322 13037 atoms, 13061 bonds, 5 pseudobonds, 835 residues, 3 models selected 
    21323 
    21324 > ui mousemode right "rotate selected models"
    21325 
    21326 > view matrix models
    21327 > #16,0.90102,-0.068914,-0.42827,120.73,0.020249,0.99291,-0.11717,45.196,0.4333,0.096901,0.89602,-83.891,#100,0.99452,0.089253,-0.054453,-7.641,-0.081884,0.98876,0.12513,-7.346,0.065009,-0.11998,0.99065,15.503
    21328 
    21329 > ui mousemode right "translate selected models"
    21330 
    21331 > view matrix models
    21332 > #16,0.90102,-0.068914,-0.42827,121.61,0.020249,0.99291,-0.11717,44.838,0.4333,0.096901,0.89602,-84.158,#100,0.99452,0.089253,-0.054453,-6.7627,-0.081884,0.98876,0.12513,-7.7045,0.065009,-0.11998,0.99065,15.236
    21333 
    21334 > ui mousemode right "rotate selected models"
    21335 
    21336 > view matrix models
    21337 > #16,0.9009,-0.066965,-0.42884,121.32,0.026887,0.99474,-0.098848,39.643,0.4332,0.077521,0.89796,-80.312,#100,0.99433,0.091275,-0.054577,-7.1933,-0.082584,0.98605,0.1445,-10.698,0.067005,-0.13917,0.988,20.033
    21338 
    21339 > ui mousemode right "translate selected models"
    21340 
    21341 > view matrix models
    21342 > #16,0.9009,-0.066965,-0.42884,121,0.026887,0.99474,-0.098848,40.13,0.4332,0.077521,0.89796,-79.945,#100,0.99433,0.091275,-0.054577,-7.5149,-0.082584,0.98605,0.1445,-10.211,0.067005,-0.13917,0.988,20.4
    21343 
    21344 > view matrix models
    21345 > #16,0.9009,-0.066965,-0.42884,120.99,0.026887,0.99474,-0.098848,40.112,0.4332,0.077521,0.89796,-79.991,#100,0.99433,0.091275,-0.054577,-7.5305,-0.082584,0.98605,0.1445,-10.229,0.067005,-0.13917,0.988,20.354
    21346 
    21347 > select subtract #16
    21348 
    21349 12796 atoms, 12821 bonds, 5 pseudobonds, 820 residues, 2 models selected 
    21350 
    21351 > select add #14
    21352 
    21353 13057 atoms, 13081 bonds, 6 pseudobonds, 837 residues, 4 models selected 
    21354 
    21355 > ui mousemode right "rotate selected models"
    21356 
    21357 > view matrix models
    21358 > #14,0.75211,0.47096,0.461,-140.09,-0.4796,0.87091,-0.10726,116.4,-0.45201,-0.14043,0.88089,140.63,#100,0.98794,0.15184,0.030179,-33.26,-0.15014,0.98728,-0.052397,39.146,-0.037752,0.047234,0.99817,4.1434
    21359 
    21360 > ui mousemode right "translate selected models"
    21361 
    21362 > view matrix models
    21363 > #14,0.75211,0.47096,0.461,-140.32,-0.4796,0.87091,-0.10726,115.9,-0.45201,-0.14043,0.88089,139.89,#100,0.98794,0.15184,0.030179,-33.488,-0.15014,0.98728,-0.052397,38.643,-0.037752,0.047234,0.99817,3.4021
    21364 
    21365 > ui mousemode right "rotate selected models"
    21366 
    21367 > view matrix models
    21368 > #14,0.72945,0.45856,0.50757,-142.2,-0.43269,0.88403,-0.17683,117.29,-0.52979,-0.090634,0.84327,151.82,#100,0.98528,0.14926,0.083302,-42.37,-0.13713,0.98116,-0.1361,52.825,-0.10205,0.12267,0.98719,3.8651
    21369 
    21370 > ui mousemode right "translate selected models"
    21371 
    21372 > view matrix models
    21373 > #14,0.72945,0.45856,0.50757,-142.42,-0.43269,0.88403,-0.17683,118.26,-0.52979,-0.090634,0.84327,151.76,#100,0.98528,0.14926,0.083302,-42.592,-0.13713,0.98116,-0.1361,53.795,-0.10205,0.12267,0.98719,3.8113
    21374 
    21375 > view matrix models
    21376 > #14,0.72945,0.45856,0.50757,-142.64,-0.43269,0.88403,-0.17683,118.06,-0.52979,-0.090634,0.84327,151.79,#100,0.98528,0.14926,0.083302,-42.815,-0.13713,0.98116,-0.1361,53.594,-0.10205,0.12267,0.98719,3.8386
    21377 
    21378 > view matrix models
    21379 > #14,0.72945,0.45856,0.50757,-142.72,-0.43269,0.88403,-0.17683,117.36,-0.52979,-0.090634,0.84327,151.45,#100,0.98528,0.14926,0.083302,-42.891,-0.13713,0.98116,-0.1361,52.9,-0.10205,0.12267,0.98719,3.4994
    21380 
    21381 > view matrix models
    21382 > #14,0.72945,0.45856,0.50757,-142.76,-0.43269,0.88403,-0.17683,117.4,-0.52979,-0.090634,0.84327,151.62,#100,0.98528,0.14926,0.083302,-42.937,-0.13713,0.98116,-0.1361,52.937,-0.10205,0.12267,0.98719,3.6721
    21383 
    21384 > ui mousemode right "translate selected models"
    21385 
    21386 > ui mousemode right "rotate selected models"
    21387 
    21388 > view matrix models
    21389 > #14,0.70213,0.46739,0.53719,-144.91,-0.41747,0.88136,-0.22118,123.42,-0.57683,-0.068963,0.81395,161.83,#100,0.97853,0.168,0.11943,-51.817,-0.14482,0.97264,-0.18165,64.458,-0.14668,0.16045,0.97608,7.3395
    21390 
    21391 > view matrix models
    21392 > #14,0.69015,0.51625,0.50713,-146.99,-0.45472,0.85452,-0.25106,141.87,-0.56296,-0.057337,0.8245,154.73,#100,0.97199,0.21757,0.088858,-54.05,-0.19803,0.96183,-0.18887,78.047,-0.12656,0.16598,0.97797,2.0908
    21393 
    21394 > ui mousemode right "translate selected models"
    21395 
    21396 > view matrix models
    21397 > #14,0.69015,0.51625,0.50713,-147.42,-0.45472,0.85452,-0.25106,142.26,-0.56296,-0.057337,0.8245,154.46,#100,0.97199,0.21757,0.088858,-54.476,-0.19803,0.96183,-0.18887,78.444,-0.12656,0.16598,0.97797,1.8146
    21398 
    21399 > view matrix models
    21400 > #14,0.69015,0.51625,0.50713,-147.29,-0.45472,0.85452,-0.25106,142.89,-0.56296,-0.057337,0.8245,154.38,#100,0.97199,0.21757,0.088858,-54.349,-0.19803,0.96183,-0.18887,79.074,-0.12656,0.16598,0.97797,1.7366
    21401 
    21402 > view matrix models
    21403 > #14,0.69015,0.51625,0.50713,-147.47,-0.45472,0.85452,-0.25106,142.74,-0.56296,-0.057337,0.8245,154.36,#100,0.97199,0.21757,0.088858,-54.521,-0.19803,0.96183,-0.18887,78.92,-0.12656,0.16598,0.97797,1.7169
    21404 
    21405 > view matrix models
    21406 > #14,0.69015,0.51625,0.50713,-147.37,-0.45472,0.85452,-0.25106,142.58,-0.56296,-0.057337,0.8245,154.75,#100,0.97199,0.21757,0.088858,-54.429,-0.19803,0.96183,-0.18887,78.758,-0.12656,0.16598,0.97797,2.1073
    21407 
    21408 > select add #15
    21409 
    21410 13266 atoms, 13289 bonds, 6 pseudobonds, 852 residues, 5 models selected 
    21411 
    21412 > select add #13
    21413 
    21414 13362 atoms, 13384 bonds, 7 pseudobonds, 860 residues, 7 models selected 
    21415 
    21416 > select subtract #15
    21417 
    21418 13153 atoms, 13176 bonds, 7 pseudobonds, 845 residues, 6 models selected 
    21419 
    21420 > select subtract #13
    21421 
    21422 13057 atoms, 13081 bonds, 6 pseudobonds, 837 residues, 4 models selected 
    21423 
    21424 > select add #57
    21425 
    21426 13254 atoms, 13276 bonds, 7 pseudobonds, 850 residues, 6 models selected 
    21427 
    21428 > ui mousemode right "rotate selected models"
    21429 
    21430 > view matrix models
    21431 > #14,0.7342,0.4816,0.47855,-143.11,-0.40092,0.87638,-0.26687,130.43,-0.54792,0.0040788,0.83652,136.4,#57,0.86678,0.4963,0.048887,-90.077,-0.49778,0.86697,0.024257,94.747,-0.030345,-0.04536,0.99851,14.428,#100,0.98435,0.1686,0.051349,-40.562,-0.15276,0.96148,-0.22854,77.286,-0.087902,0.21712,0.97218,-14.166
    21432 
    21433 > view matrix models
    21434 > #14,0.80659,0.31562,0.4998,-125.8,-0.24884,0.94825,-0.19723,72.154,-0.53619,0.034709,0.84339,126.26,#57,0.94273,0.33289,0.021177,-64.472,-0.33311,0.94286,0.0078994,49.609,-0.017338,-0.014501,0.99974,5.0448,#100,0.99749,-0.012312,0.069734,-11.989,0.028729,0.97044,-0.23961,42.039,-0.064723,0.24101,0.96836,-22.568
    21435 
    21436 > ui mousemode right "translate selected models"
    21437 
    21438 > view matrix models
    21439 > #14,0.80659,0.31562,0.4998,-123.68,-0.24884,0.94825,-0.19723,69.369,-0.53619,0.034709,0.84339,125.61,#57,0.94273,0.33289,0.021177,-62.345,-0.33311,0.94286,0.0078994,46.824,-0.017338,-0.014501,0.99974,4.3974,#100,0.99749,-0.012312,0.069734,-9.8632,0.028729,0.97044,-0.23961,39.254,-0.064723,0.24101,0.96836,-23.216
    21440 
    21441 > select subtract #57
    21442 
    21443 13057 atoms, 13081 bonds, 6 pseudobonds, 837 residues, 4 models selected 
    21444 
    21445 > view matrix models
    21446 > #14,0.80659,0.31562,0.4998,-123.46,-0.24884,0.94825,-0.19723,69.164,-0.53619,0.034709,0.84339,124.97,#100,0.99749,-0.012312,0.069734,-9.647,0.028729,0.97044,-0.23961,39.049,-0.064723,0.24101,0.96836,-23.855
    21447 
    21448 > ui mousemode right "rotate selected models"
    21449 
    21450 > view matrix models
    21451 > #14,0.82485,0.29672,0.48123,-119.57,-0.21788,0.95229,-0.21372,65.452,-0.52168,0.071436,0.85014,113.28,#100,0.99812,-0.03685,0.048918,-1.3598,0.048643,0.9623,-0.26761,41.926,-0.037212,0.26949,0.96228,-33.293
    21452 
    21453 > ui mousemode right "translate selected models"
    21454 
    21455 > view matrix models
    21456 > #14,0.82485,0.29672,0.48123,-119.39,-0.21788,0.95229,-0.21372,65.324,-0.52168,0.071436,0.85014,112.81,#100,0.99812,-0.03685,0.048918,-1.182,0.048643,0.9623,-0.26761,41.797,-0.037212,0.26949,0.96228,-33.768
    21457 
    21458 > view matrix models
    21459 > #14,0.82485,0.29672,0.48123,-119.37,-0.21788,0.95229,-0.21372,65.485,-0.52168,0.071436,0.85014,112.84,#100,0.99812,-0.03685,0.048918,-1.1641,0.048643,0.9623,-0.26761,41.958,-0.037212,0.26949,0.96228,-33.732
    21460 
    21461 > combine #13-18,57
    21462 
    21463 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    21464 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    21465 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    21466 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    21467 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    21468 to 'q' 
    21469 
    21470 > mmaker #101/9 to #95/9 pairing ss
    21471 
    21472 Parameters 
    21473 --- 
    21474 Chain pairing | ss 
    21475 Alignment algorithm | Needleman-Wunsch 
    21476 Similarity matrix | BLOSUM-62 
    21477 SS fraction | 0.3 
    21478 Gap open (HH/SS/other) | 18/18/6 
    21479 Gap extend | 1 
    21480 SS matrix |  |  | H | S | O 
    21481 ---|---|---|--- 
    21482 H | 6 | -9 | -6 
    21483 S |  | 6 | -6 
    21484 O |  |  | 4 
    21485 Iteration cutoff | 2 
    21486  
    21487 Matchmaker combination, chain 9 (#95) with combination, chain 9 (#101),
    21488 sequence alignment score = 674.3 
    21489 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    21490 0.000) 
    21491  
    21492 
    21493 > combine #13-18,57
    21494 
    21495 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    21496 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    21497 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    21498 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    21499 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    21500 to 'q' 
    21501 
    21502 > mmaker #102/9 to #96/9 pairing ss
    21503 
    21504 Parameters 
    21505 --- 
    21506 Chain pairing | ss 
    21507 Alignment algorithm | Needleman-Wunsch 
    21508 Similarity matrix | BLOSUM-62 
    21509 SS fraction | 0.3 
    21510 Gap open (HH/SS/other) | 18/18/6 
    21511 Gap extend | 1 
    21512 SS matrix |  |  | H | S | O 
    21513 ---|---|---|--- 
    21514 H | 6 | -9 | -6 
    21515 S |  | 6 | -6 
    21516 O |  |  | 4 
    21517 Iteration cutoff | 2 
    21518  
    21519 Matchmaker combination, chain 9 (#96) with combination, chain 9 (#102),
    21520 sequence alignment score = 674.3 
    21521 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    21522 0.000) 
    21523  
    21524 
    21525 > combine #13-18,57
    21526 
    21527 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    21528 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    21529 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    21530 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    21531 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    21532 to 'q' 
    21533 
    21534 > mmaker #103/9 to #97/9 pairing ss
    21535 
    21536 Parameters 
    21537 --- 
    21538 Chain pairing | ss 
    21539 Alignment algorithm | Needleman-Wunsch 
    21540 Similarity matrix | BLOSUM-62 
    21541 SS fraction | 0.3 
    21542 Gap open (HH/SS/other) | 18/18/6 
    21543 Gap extend | 1 
    21544 SS matrix |  |  | H | S | O 
    21545 ---|---|---|--- 
    21546 H | 6 | -9 | -6 
    21547 S |  | 6 | -6 
    21548 O |  |  | 4 
    21549 Iteration cutoff | 2 
    21550  
    21551 Matchmaker combination, chain 9 (#97) with combination, chain 9 (#103),
    21552 sequence alignment score = 674.3 
    21553 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    21554 0.000) 
    21555  
    21556 
    21557 > combine #13-18,57
    21558 
    21559 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    21560 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    21561 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    21562 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    21563 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    21564 to 'q' 
    21565 
    21566 > mmaker #104/9 to #98/9 pairing ss
    21567 
    21568 Parameters 
    21569 --- 
    21570 Chain pairing | ss 
    21571 Alignment algorithm | Needleman-Wunsch 
    21572 Similarity matrix | BLOSUM-62 
    21573 SS fraction | 0.3 
    21574 Gap open (HH/SS/other) | 18/18/6 
    21575 Gap extend | 1 
    21576 SS matrix |  |  | H | S | O 
    21577 ---|---|---|--- 
    21578 H | 6 | -9 | -6 
    21579 S |  | 6 | -6 
    21580 O |  |  | 4 
    21581 Iteration cutoff | 2 
    21582  
    21583 Matchmaker combination, chain 9 (#98) with combination, chain 9 (#104),
    21584 sequence alignment score = 674.3 
    21585 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    21586 0.000) 
    21587  
    21588 
    21589 > select clear
    21590 
    21591 > volume #8 level 0.008765
    21592 
    21593 > volume #8 level 0.009517
    21594 
    21595 > select add #102
    21596 
    21597 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21598 
    21599 > select subtract #102
    21600 
    21601 Nothing selected 
    21602 
    21603 > select add #103
    21604 
    21605 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21606 
    21607 > select subtract #103
    21608 
    21609 Nothing selected 
    21610 
    21611 > select add #104
    21612 
    21613 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21614 
    21615 > select subtract #104
    21616 
    21617 Nothing selected 
    21618 
    21619 > select add #101
    21620 
    21621 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21622 
    21623 > ui mousemode right "rotate selected models"
    21624 
    21625 > view matrix models
    21626 > #101,0.94457,0.29471,-0.14465,-22.201,-0.27902,0.95284,0.11933,-12.712,0.173,-0.072358,0.98226,-12.007
    21627 
    21628 > ui mousemode right "translate selected models"
    21629 
    21630 > view matrix models
    21631 > #101,0.94457,0.29471,-0.14465,-21.661,-0.27902,0.95284,0.11933,-12.547,0.173,-0.072358,0.98226,-11.751
    21632 
    21633 Drag select of 19 residues 
    21634 Drag select of 60 residues, 1 pseudobonds 
    21635 
    21636 > fitmap sel inMap #8
    21637 
    21638 Fit molecule combination (#101) to map postprocess_masked330_onepf.mrc (#8)
    21639 using 953 atoms 
    21640 average map value = 0.01539, steps = 92 
    21641 shifted from previous position = 3.2 
    21642 rotated from previous position = 18 degrees 
    21643 atoms outside contour = 378, contour level = 0.0095166 
    21644  
    21645 Position of combination (#101) relative to postprocess_masked330_onepf.mrc
    21646 (#8) coordinates: 
    21647 Matrix rotation and translation 
    21648 0.90544793 0.24036188 -0.34984313 39.58122198 
    21649 -0.29493223 0.94901331 -0.11130461 41.36310621 
    21650 0.30525240 0.20396054 0.93017260 -92.88922098 
    21651 Axis 0.34920086 -0.72561119 -0.59291413 
    21652 Axis point 231.46865987 -0.00000000 11.76868988 
    21653 Rotation angle (degrees) 26.83415065 
    21654 Shift along axis 38.88359560 
    21655  
    21656 
    21657 > select add #101
    21658 
    21659 2591 atoms, 2586 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21660 
    21661 > undo
    21662 
    21663 [Repeated 2 time(s)]
    21664 
    21665 > mmaker #101/9 to #95/9 pairing ss
    21666 
    21667 Parameters 
    21668 --- 
    21669 Chain pairing | ss 
    21670 Alignment algorithm | Needleman-Wunsch 
    21671 Similarity matrix | BLOSUM-62 
    21672 SS fraction | 0.3 
    21673 Gap open (HH/SS/other) | 18/18/6 
    21674 Gap extend | 1 
    21675 SS matrix |  |  | H | S | O 
    21676 ---|---|---|--- 
    21677 H | 6 | -9 | -6 
    21678 S |  | 6 | -6 
    21679 O |  |  | 4 
    21680 Iteration cutoff | 2 
    21681  
    21682 Matchmaker combination, chain 9 (#95) with combination, chain 9 (#101),
    21683 sequence alignment score = 674.3 
    21684 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    21685 0.000) 
    21686  
    21687 
    21688 > select clear
    21689 
    21690 > combine #9
    21691 
    21692 > select add #105
    21693 
    21694 15238 atoms, 15247 bonds, 7 pseudobonds, 978 residues, 2 models selected 
    21695 
    21696 > show sel atoms
    21697 
    21698 > select clear
    21699 
    21700 > select H
    21701 
    21702 145528 atoms, 18567 residues, 98 models selected 
    21703 
    21704 > delete atoms (#!13-18,57,101-105 & sel)
    21705 
    21706 > delete bonds (#!13-18,57,101-105 & sel)
    21707 
    21708 > select clear
    21709 
    21710 > hide #!105 models
    21711 
    21712 > show #!105 models
    21713 
    21714 > hide #!105 models
    21715 
    21716 > mmaker #105/f to #18/6
    21717 
    21718 Parameters 
    21719 --- 
    21720 Chain pairing | bb 
    21721 Alignment algorithm | Needleman-Wunsch 
    21722 Similarity matrix | BLOSUM-62 
    21723 SS fraction | 0.3 
    21724 Gap open (HH/SS/other) | 18/18/6 
    21725 Gap extend | 1 
    21726 SS matrix |  |  | H | S | O 
    21727 ---|---|---|--- 
    21728 H | 6 | -9 | -6 
    21729 S |  | 6 | -6 
    21730 O |  |  | 4 
    21731 Iteration cutoff | 2 
    21732  
    21733 Matchmaker copy of copy of copy of pointy-1pf.pdb, chain 6 (#18) with copy of
    21734 pointy-1pf.pdb, chain f (#105), sequence alignment score = 607.5 
    21735 RMSD between 66 pruned atom pairs is 0.001 angstroms; (across all 66 pairs:
    21736 0.001) 
    21737  
    21738 
    21739 > show #!105 models
    21740 
    21741 > select clear
    21742 
    21743 > hide #!13-18,57,101-105 atoms
    21744 
    21745 > hide #!105 models
    21746 
    21747 > volume #8 level 0.01008
    21748 
    21749 > show #!105 models
    21750 
    21751 > hide #!105 models
    21752 
    21753 > select add #103
    21754 
    21755 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21756 
    21757 > select add #102
    21758 
    21759 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    21760 
    21761 > select subtract #102
    21762 
    21763 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21764 
    21765 > select subtract #103
    21766 
    21767 Nothing selected 
    21768 
    21769 > select add #101
    21770 
    21771 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21772 
    21773 > select subtract #101
    21774 
    21775 Nothing selected 
    21776 
    21777 > select add #104
    21778 
    21779 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21780 
    21781 > ui mousemode right "translate selected models"
    21782 
    21783 > view matrix models
    21784 > #104,0.91743,0.32652,-0.22738,-3.0444,-0.30788,0.94455,0.11417,68.995,0.25205,-0.034742,0.96709,-33.797
    21785 
    21786 > view matrix models
    21787 > #104,0.91743,0.32652,-0.22738,-3.1125,-0.30788,0.94455,0.11417,68.697,0.25205,-0.034742,0.96709,-33.854
    21788 
    21789 > view matrix models
    21790 > #104,0.91743,0.32652,-0.22738,-3.2763,-0.30788,0.94455,0.11417,68.648,0.25205,-0.034742,0.96709,-33.596
    21791 
    21792 > select add #103
    21793 
    21794 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    21795 
    21796 > select subtract #103
    21797 
    21798 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21799 
    21800 > select add #102
    21801 
    21802 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    21803 
    21804 > select subtract #104
    21805 
    21806 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21807 
    21808 > select add #101
    21809 
    21810 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    21811 
    21812 > select subtract #102
    21813 
    21814 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    21815 
    21816 > ui mousemode right "rotate selected models"
    21817 
    21818 > view matrix models
    21819 > #101,0.95019,0.27401,-0.14852,-17.653,-0.2526,0.95618,0.14804,-24.48,0.18257,-0.10316,0.97777,-5.7327
    21820 
    21821 > ui mousemode right "translate selected models"
    21822 
    21823 [Repeated 1 time(s)]
    21824 
    21825 > view matrix models
    21826 > #101,0.95019,0.27401,-0.14852,-17.213,-0.2526,0.95618,0.14804,-26.38,0.18257,-0.10316,0.97777,-5.972
    21827 
    21828 > view matrix models
    21829 > #101,0.95019,0.27401,-0.14852,-17.386,-0.2526,0.95618,0.14804,-26.918,0.18257,-0.10316,0.97777,-5.9945
    21830 
    21831 > view matrix models
    21832 > #101,0.95019,0.27401,-0.14852,-17.831,-0.2526,0.95618,0.14804,-26.606,0.18257,-0.10316,0.97777,-5.8438
    21833 
    21834 > view matrix models
    21835 > #101,0.95019,0.27401,-0.14852,-17.837,-0.2526,0.95618,0.14804,-26.662,0.18257,-0.10316,0.97777,-5.8431
    21836 
    21837 > view matrix models
    21838 > #101,0.95019,0.27401,-0.14852,-17.702,-0.2526,0.95618,0.14804,-26.726,0.18257,-0.10316,0.97777,-6.13
    21839 
    21840 > hide #!101-105 target m
    21841 
    21842 > volume #8 level 0.01534
    21843 
    21844 > volume #8 level 0.004252
    21845 
    21846 > volume #8 level 0.01534
    21847 
    21848 > show #!101 models
    21849 
    21850 > select subtract #101
    21851 
    21852 Nothing selected 
    21853 
    21854 > hide #!101 models
    21855 
    21856 > show #!102 models
    21857 
    21858 > show #!103 models
    21859 
    21860 > hide #!103 models
    21861 
    21862 > show #!104 models
    21863 
    21864 > hide #!104 models
    21865 
    21866 > show #!105 models
    21867 
    21868 > hide #!105 models
    21869 
    21870 > show #!103 models
    21871 
    21872 > show #!104 models
    21873 
    21874 > show #!101 models
    21875 
    21876 > close #101-104
    21877 
    21878 > combine #13-18,57
    21879 
    21880 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    21881 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    21882 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    21883 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    21884 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    21885 to 'q' 
    21886 
    21887 > mmaker #101/9 to #95/9 pairing ss
    21888 
    21889 Parameters 
    21890 --- 
    21891 Chain pairing | ss 
    21892 Alignment algorithm | Needleman-Wunsch 
    21893 Similarity matrix | BLOSUM-62 
    21894 SS fraction | 0.3 
    21895 Gap open (HH/SS/other) | 18/18/6 
    21896 Gap extend | 1 
    21897 SS matrix |  |  | H | S | O 
    21898 ---|---|---|--- 
    21899 H | 6 | -9 | -6 
    21900 S |  | 6 | -6 
    21901 O |  |  | 4 
    21902 Iteration cutoff | 2 
    21903  
    21904 Matchmaker combination, chain 9 (#95) with combination, chain 9 (#101),
    21905 sequence alignment score = 674.3 
    21906 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    21907 0.000) 
    21908  
    21909 
    21910 > combine #13-18,57
    21911 
    21912 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    21913 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    21914 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    21915 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    21916 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    21917 to 'q' 
    21918 
    21919 > mmaker #102/9 to #96/9 pairing ss
    21920 
    21921 Parameters 
    21922 --- 
    21923 Chain pairing | ss 
    21924 Alignment algorithm | Needleman-Wunsch 
    21925 Similarity matrix | BLOSUM-62 
    21926 SS fraction | 0.3 
    21927 Gap open (HH/SS/other) | 18/18/6 
    21928 Gap extend | 1 
    21929 SS matrix |  |  | H | S | O 
    21930 ---|---|---|--- 
    21931 H | 6 | -9 | -6 
    21932 S |  | 6 | -6 
    21933 O |  |  | 4 
    21934 Iteration cutoff | 2 
    21935  
    21936 Matchmaker combination, chain 9 (#96) with combination, chain 9 (#102),
    21937 sequence alignment score = 674.3 
    21938 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    21939 0.000) 
    21940  
    21941 
    21942 > combine #13-18,57
    21943 
    21944 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    21945 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    21946 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    21947 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    21948 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    21949 to 'q' 
    21950 
    21951 > mmaker #103/9 to #97/9 pairing ss
    21952 
    21953 Parameters 
    21954 --- 
    21955 Chain pairing | ss 
    21956 Alignment algorithm | Needleman-Wunsch 
    21957 Similarity matrix | BLOSUM-62 
    21958 SS fraction | 0.3 
    21959 Gap open (HH/SS/other) | 18/18/6 
    21960 Gap extend | 1 
    21961 SS matrix |  |  | H | S | O 
    21962 ---|---|---|--- 
    21963 H | 6 | -9 | -6 
    21964 S |  | 6 | -6 
    21965 O |  |  | 4 
    21966 Iteration cutoff | 2 
    21967  
    21968 Matchmaker combination, chain 9 (#97) with combination, chain 9 (#103),
    21969 sequence alignment score = 674.3 
    21970 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    21971 0.000) 
    21972  
    21973 
    21974 > combine #13-18,57
    21975 
    21976 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    21977 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    21978 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    21979 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    21980 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    21981 to 'q' 
    21982 
    21983 > mmaker #104/9 to #98/9 pairing ss
    21984 
    21985 Parameters 
    21986 --- 
    21987 Chain pairing | ss 
    21988 Alignment algorithm | Needleman-Wunsch 
    21989 Similarity matrix | BLOSUM-62 
    21990 SS fraction | 0.3 
    21991 Gap open (HH/SS/other) | 18/18/6 
    21992 Gap extend | 1 
    21993 SS matrix |  |  | H | S | O 
    21994 ---|---|---|--- 
    21995 H | 6 | -9 | -6 
    21996 S |  | 6 | -6 
    21997 O |  |  | 4 
    21998 Iteration cutoff | 2 
    21999  
    22000 Matchmaker combination, chain 9 (#98) with combination, chain 9 (#104),
    22001 sequence alignment score = 674.3 
    22002 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22003 0.000) 
    22004  
    22005 
    22006 > volume #8 level 0.00538
    22007 
    22008 > volume #8 level 0.0144
    22009 
    22010 > volume #8 level 0.009517
    22011 
    22012 > volume #8 level 0.01328
    22013 
    22014 > select add #101
    22015 
    22016 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    22017 
    22018 > select add #102
    22019 
    22020 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    22021 
    22022 > select subtract #102
    22023 
    22024 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    22025 
    22026 > select subtract #101
    22027 
    22028 Nothing selected 
    22029 
    22030 > select add #57
    22031 
    22032 100 atoms, 98 bonds, 1 pseudobond, 13 residues, 2 models selected 
    22033 
    22034 > select add #14
    22035 
    22036 233 atoms, 230 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    22037 
    22038 > ui mousemode right "rotate selected models"
    22039 
    22040 > view matrix models
    22041 > #14,0.7464,0.37875,0.5472,-134.19,-0.32723,0.92486,-0.19379,88.874,-0.57949,-0.034411,0.81426,153.59,#57,0.90581,0.405,0.12448,-90.327,-0.41584,0.90609,0.077974,57.464,-0.081211,-0.12239,0.98915,42.01
    22042 
    22043 > ui mousemode right "translate selected models"
    22044 
    22045 > view matrix models
    22046 > #14,0.7464,0.37875,0.5472,-135.2,-0.32723,0.92486,-0.19379,88.926,-0.57949,-0.034411,0.81426,155.41,#57,0.90581,0.405,0.12448,-91.336,-0.41584,0.90609,0.077974,57.516,-0.081211,-0.12239,0.98915,43.83
    22047 
    22048 > view matrix models
    22049 > #14,0.7464,0.37875,0.5472,-135.25,-0.32723,0.92486,-0.19379,89.441,-0.57949,-0.034411,0.81426,155.37,#57,0.90581,0.405,0.12448,-91.38,-0.41584,0.90609,0.077974,58.031,-0.081211,-0.12239,0.98915,43.794
    22050 
    22051 > close #101-104
    22052 
    22053 > combine #13-18,57
    22054 
    22055 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22056 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22057 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22058 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22059 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22060 to 'q' 
    22061 
    22062 > mmaker #101/9 to #95/9 pairing ss
    22063 
    22064 Parameters 
    22065 --- 
    22066 Chain pairing | ss 
    22067 Alignment algorithm | Needleman-Wunsch 
    22068 Similarity matrix | BLOSUM-62 
    22069 SS fraction | 0.3 
    22070 Gap open (HH/SS/other) | 18/18/6 
    22071 Gap extend | 1 
    22072 SS matrix |  |  | H | S | O 
    22073 ---|---|---|--- 
    22074 H | 6 | -9 | -6 
    22075 S |  | 6 | -6 
    22076 O |  |  | 4 
    22077 Iteration cutoff | 2 
    22078  
    22079 Matchmaker combination, chain 9 (#95) with combination, chain 9 (#101),
    22080 sequence alignment score = 674.3 
    22081 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22082 0.000) 
    22083  
    22084 
    22085 > combine #13-18,57
    22086 
    22087 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22088 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22089 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22090 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22091 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22092 to 'q' 
    22093 
    22094 > mmaker #102/9 to #96/9 pairing ss
    22095 
    22096 Parameters 
    22097 --- 
    22098 Chain pairing | ss 
    22099 Alignment algorithm | Needleman-Wunsch 
    22100 Similarity matrix | BLOSUM-62 
    22101 SS fraction | 0.3 
    22102 Gap open (HH/SS/other) | 18/18/6 
    22103 Gap extend | 1 
    22104 SS matrix |  |  | H | S | O 
    22105 ---|---|---|--- 
    22106 H | 6 | -9 | -6 
    22107 S |  | 6 | -6 
    22108 O |  |  | 4 
    22109 Iteration cutoff | 2 
    22110  
    22111 Matchmaker combination, chain 9 (#96) with combination, chain 9 (#102),
    22112 sequence alignment score = 674.3 
    22113 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22114 0.000) 
    22115  
    22116 
    22117 > combine #13-18,57
    22118 
    22119 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22120 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22121 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22122 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22123 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22124 to 'q' 
    22125 
    22126 > mmaker #103/9 to #97/9 pairing ss
    22127 
    22128 Parameters 
    22129 --- 
    22130 Chain pairing | ss 
    22131 Alignment algorithm | Needleman-Wunsch 
    22132 Similarity matrix | BLOSUM-62 
    22133 SS fraction | 0.3 
    22134 Gap open (HH/SS/other) | 18/18/6 
    22135 Gap extend | 1 
    22136 SS matrix |  |  | H | S | O 
    22137 ---|---|---|--- 
    22138 H | 6 | -9 | -6 
    22139 S |  | 6 | -6 
    22140 O |  |  | 4 
    22141 Iteration cutoff | 2 
    22142  
    22143 Matchmaker combination, chain 9 (#97) with combination, chain 9 (#103),
    22144 sequence alignment score = 674.3 
    22145 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22146 0.000) 
    22147  
    22148 
    22149 > combine #13-18,57
    22150 
    22151 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22152 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22153 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22154 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22155 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22156 to 'q' 
    22157 
    22158 > mmaker #104/9 to #98/9 pairing ss
    22159 
    22160 Parameters 
    22161 --- 
    22162 Chain pairing | ss 
    22163 Alignment algorithm | Needleman-Wunsch 
    22164 Similarity matrix | BLOSUM-62 
    22165 SS fraction | 0.3 
    22166 Gap open (HH/SS/other) | 18/18/6 
    22167 Gap extend | 1 
    22168 SS matrix |  |  | H | S | O 
    22169 ---|---|---|--- 
    22170 H | 6 | -9 | -6 
    22171 S |  | 6 | -6 
    22172 O |  |  | 4 
    22173 Iteration cutoff | 2 
    22174  
    22175 Matchmaker combination, chain 9 (#98) with combination, chain 9 (#104),
    22176 sequence alignment score = 674.3 
    22177 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22178 0.000) 
    22179  
    22180 
    22181 > ui mousemode right "rotate selected models"
    22182 
    22183 > view matrix models
    22184 > #14,0.61216,0.38966,0.68806,-138.28,-0.2302,0.92028,-0.31637,94.884,-0.75648,0.035278,0.65306,205.73,#57,0.86189,0.39801,0.31422,-117.52,-0.39482,0.91555,-0.076714,81.409,-0.31822,-0.057942,0.94624,84.291
    22185 
    22186 > undo
    22187 
    22188 > view matrix models
    22189 > #14,0.78772,0.34302,0.51169,-128.89,-0.25867,0.93803,-0.23062,80.277,-0.55909,0.049301,0.82764,130.94,#57,0.92458,0.3745,0.070051,-78.11,-0.37623,0.92644,0.012813,58.373,-0.060099,-0.038202,0.99746,20.021
    22190 
    22191 > ui mousemode right "translate selected models"
    22192 
    22193 > view matrix models
    22194 > #14,0.78772,0.34302,0.51169,-128.95,-0.25867,0.93803,-0.23062,80.429,-0.55909,0.049301,0.82764,131.64,#57,0.92458,0.3745,0.070051,-78.169,-0.37623,0.92644,0.012813,58.526,-0.060099,-0.038202,0.99746,20.726
    22195 
    22196 > ui mousemode right "rotate selected models"
    22197 
    22198 > view matrix models
    22199 > #14,0.79835,0.34989,0.49012,-128.39,-0.27132,0.93559,-0.22595,82.531,-0.53761,0.047407,0.84186,125.15,#57,0.92244,0.38331,0.046746,-75.21,-0.38462,0.92279,0.023007,59.003,-0.034318,-0.039202,0.99864,15.702
    22200 
    22201 > view matrix models
    22202 > #14,0.78198,0.3762,0.49697,-132.12,-0.29984,0.92604,-0.22921,90.754,-0.54645,0.030228,0.83695,131.48,#57,0.91085,0.40788,0.063149,-81.354,-0.41042,0.91127,0.033817,64.435,-0.043752,-0.05672,0.99743,21.528
    22203 
    22204 > close #101-104
    22205 
    22206 > combine #13-18,57
    22207 
    22208 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22209 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22210 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22211 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22212 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22213 to 'q' 
    22214 
    22215 > mmaker #101/9 to #95/9 pairing ss
    22216 
    22217 Parameters 
    22218 --- 
    22219 Chain pairing | ss 
    22220 Alignment algorithm | Needleman-Wunsch 
    22221 Similarity matrix | BLOSUM-62 
    22222 SS fraction | 0.3 
    22223 Gap open (HH/SS/other) | 18/18/6 
    22224 Gap extend | 1 
    22225 SS matrix |  |  | H | S | O 
    22226 ---|---|---|--- 
    22227 H | 6 | -9 | -6 
    22228 S |  | 6 | -6 
    22229 O |  |  | 4 
    22230 Iteration cutoff | 2 
    22231  
    22232 Matchmaker combination, chain 9 (#95) with combination, chain 9 (#101),
    22233 sequence alignment score = 674.3 
    22234 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22235 0.000) 
    22236  
    22237 
    22238 > combine #13-18,57
    22239 
    22240 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22241 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22242 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22243 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22244 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22245 to 'q' 
    22246 
    22247 > mmaker #102/9 to #96/9 pairing ss
    22248 
    22249 Parameters 
    22250 --- 
    22251 Chain pairing | ss 
    22252 Alignment algorithm | Needleman-Wunsch 
    22253 Similarity matrix | BLOSUM-62 
    22254 SS fraction | 0.3 
    22255 Gap open (HH/SS/other) | 18/18/6 
    22256 Gap extend | 1 
    22257 SS matrix |  |  | H | S | O 
    22258 ---|---|---|--- 
    22259 H | 6 | -9 | -6 
    22260 S |  | 6 | -6 
    22261 O |  |  | 4 
    22262 Iteration cutoff | 2 
    22263  
    22264 Matchmaker combination, chain 9 (#96) with combination, chain 9 (#102),
    22265 sequence alignment score = 674.3 
    22266 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22267 0.000) 
    22268  
    22269 
    22270 > combine #13-18,57
    22271 
    22272 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22273 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22274 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22275 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22276 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22277 to 'q' 
    22278 
    22279 > mmaker #103/9 to #97/9 pairing ss
    22280 
    22281 Parameters 
    22282 --- 
    22283 Chain pairing | ss 
    22284 Alignment algorithm | Needleman-Wunsch 
    22285 Similarity matrix | BLOSUM-62 
    22286 SS fraction | 0.3 
    22287 Gap open (HH/SS/other) | 18/18/6 
    22288 Gap extend | 1 
    22289 SS matrix |  |  | H | S | O 
    22290 ---|---|---|--- 
    22291 H | 6 | -9 | -6 
    22292 S |  | 6 | -6 
    22293 O |  |  | 4 
    22294 Iteration cutoff | 2 
    22295  
    22296 Matchmaker combination, chain 9 (#97) with combination, chain 9 (#103),
    22297 sequence alignment score = 674.3 
    22298 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22299 0.000) 
    22300  
    22301 
    22302 > combine #13-18,57
    22303 
    22304 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22305 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22306 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22307 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22308 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22309 to 'q' 
    22310 
    22311 > mmaker #104/9 to #98/9 pairing ss
    22312 
    22313 Parameters 
    22314 --- 
    22315 Chain pairing | ss 
    22316 Alignment algorithm | Needleman-Wunsch 
    22317 Similarity matrix | BLOSUM-62 
    22318 SS fraction | 0.3 
    22319 Gap open (HH/SS/other) | 18/18/6 
    22320 Gap extend | 1 
    22321 SS matrix |  |  | H | S | O 
    22322 ---|---|---|--- 
    22323 H | 6 | -9 | -6 
    22324 S |  | 6 | -6 
    22325 O |  |  | 4 
    22326 Iteration cutoff | 2 
    22327  
    22328 Matchmaker combination, chain 9 (#98) with combination, chain 9 (#104),
    22329 sequence alignment score = 674.3 
    22330 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22331 0.000) 
    22332  
    22333 
    22334 > select add #13
    22335 
    22336 285 atoms, 281 bonds, 3 pseudobonds, 38 residues, 6 models selected 
    22337 
    22338 > select subtract #14
    22339 
    22340 152 atoms, 149 bonds, 2 pseudobonds, 21 residues, 4 models selected 
    22341 
    22342 > select subtract #57
    22343 
    22344 52 atoms, 51 bonds, 1 pseudobond, 8 residues, 2 models selected 
    22345 
    22346 > view matrix models
    22347 > #13,0.80327,0.58597,-0.10675,-70.231,-0.55691,0.80246,0.21423,85.392,0.2112,-0.11264,0.97093,-8.8942
    22348 
    22349 > ui mousemode right "translate selected models"
    22350 
    22351 > view matrix models
    22352 > #13,0.80327,0.58597,-0.10675,-70.77,-0.55691,0.80246,0.21423,84.895,0.2112,-0.11264,0.97093,-8.8583
    22353 
    22354 > view matrix models
    22355 > #13,0.80327,0.58597,-0.10675,-70.756,-0.55691,0.80246,0.21423,84.872,0.2112,-0.11264,0.97093,-8.4649
    22356 
    22357 > view matrix models
    22358 > #13,0.80327,0.58597,-0.10675,-70.81,-0.55691,0.80246,0.21423,84.906,0.2112,-0.11264,0.97093,-8.0302
    22359 
    22360 > view matrix models
    22361 > #13,0.80327,0.58597,-0.10675,-70.998,-0.55691,0.80246,0.21423,84.902,0.2112,-0.11264,0.97093,-7.6138
    22362 
    22363 > select add #57
    22364 
    22365 152 atoms, 149 bonds, 2 pseudobonds, 21 residues, 4 models selected 
    22366 
    22367 > select subtract #13
    22368 
    22369 100 atoms, 98 bonds, 1 pseudobond, 13 residues, 2 models selected 
    22370 
    22371 > select add #14
    22372 
    22373 233 atoms, 230 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    22374 
    22375 > ui mousemode right "rotate selected models"
    22376 
    22377 > ui mousemode right "translate selected models"
    22378 
    22379 > view matrix models
    22380 > #14,0.78198,0.3762,0.49697,-131.93,-0.29984,0.92604,-0.22921,90.7,-0.54645,0.030228,0.83695,131.27,#57,0.91085,0.40788,0.063149,-81.163,-0.41042,0.91127,0.033817,64.382,-0.043752,-0.05672,0.99743,21.32
    22381 
    22382 > view matrix models
    22383 > #14,0.78198,0.3762,0.49697,-132.33,-0.29984,0.92604,-0.22921,90.882,-0.54645,0.030228,0.83695,131.16,#57,0.91085,0.40788,0.063149,-81.558,-0.41042,0.91127,0.033817,64.564,-0.043752,-0.05672,0.99743,21.206
    22384 
    22385 > view matrix models
    22386 > #14,0.78198,0.3762,0.49697,-132.44,-0.29984,0.92604,-0.22921,90.554,-0.54645,0.030228,0.83695,131.15,#57,0.91085,0.40788,0.063149,-81.666,-0.41042,0.91127,0.033817,64.236,-0.043752,-0.05672,0.99743,21.197
    22387 
    22388 > close #101-104
    22389 
    22390 > combine #13-18,57
    22391 
    22392 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22393 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22394 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22395 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22396 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22397 to 'q' 
    22398 
    22399 > mmaker #101/9 to #95/9 pairing ss
    22400 
    22401 Parameters 
    22402 --- 
    22403 Chain pairing | ss 
    22404 Alignment algorithm | Needleman-Wunsch 
    22405 Similarity matrix | BLOSUM-62 
    22406 SS fraction | 0.3 
    22407 Gap open (HH/SS/other) | 18/18/6 
    22408 Gap extend | 1 
    22409 SS matrix |  |  | H | S | O 
    22410 ---|---|---|--- 
    22411 H | 6 | -9 | -6 
    22412 S |  | 6 | -6 
    22413 O |  |  | 4 
    22414 Iteration cutoff | 2 
    22415  
    22416 Matchmaker combination, chain 9 (#95) with combination, chain 9 (#101),
    22417 sequence alignment score = 674.3 
    22418 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22419 0.000) 
    22420  
    22421 
    22422 > combine #13-18,57
    22423 
    22424 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22425 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22426 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22427 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22428 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22429 to 'q' 
    22430 
    22431 > mmaker #102/9 to #96/9 pairing ss
    22432 
    22433 Parameters 
    22434 --- 
    22435 Chain pairing | ss 
    22436 Alignment algorithm | Needleman-Wunsch 
    22437 Similarity matrix | BLOSUM-62 
    22438 SS fraction | 0.3 
    22439 Gap open (HH/SS/other) | 18/18/6 
    22440 Gap extend | 1 
    22441 SS matrix |  |  | H | S | O 
    22442 ---|---|---|--- 
    22443 H | 6 | -9 | -6 
    22444 S |  | 6 | -6 
    22445 O |  |  | 4 
    22446 Iteration cutoff | 2 
    22447  
    22448 Matchmaker combination, chain 9 (#96) with combination, chain 9 (#102),
    22449 sequence alignment score = 674.3 
    22450 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22451 0.000) 
    22452  
    22453 
    22454 > combine #13-18,57
    22455 
    22456 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22457 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22458 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22459 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22460 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22461 to 'q' 
    22462 
    22463 > mmaker #103/9 to #97/9 pairing ss
    22464 
    22465 Parameters 
    22466 --- 
    22467 Chain pairing | ss 
    22468 Alignment algorithm | Needleman-Wunsch 
    22469 Similarity matrix | BLOSUM-62 
    22470 SS fraction | 0.3 
    22471 Gap open (HH/SS/other) | 18/18/6 
    22472 Gap extend | 1 
    22473 SS matrix |  |  | H | S | O 
    22474 ---|---|---|--- 
    22475 H | 6 | -9 | -6 
    22476 S |  | 6 | -6 
    22477 O |  |  | 4 
    22478 Iteration cutoff | 2 
    22479  
    22480 Matchmaker combination, chain 9 (#97) with combination, chain 9 (#103),
    22481 sequence alignment score = 674.3 
    22482 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22483 0.000) 
    22484  
    22485 
    22486 > combine #13-18,57
    22487 
    22488 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22489 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22490 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22491 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22492 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22493 to 'q' 
    22494 
    22495 > mmaker #104/9 to #98/9 pairing ss
    22496 
    22497 Parameters 
    22498 --- 
    22499 Chain pairing | ss 
    22500 Alignment algorithm | Needleman-Wunsch 
    22501 Similarity matrix | BLOSUM-62 
    22502 SS fraction | 0.3 
    22503 Gap open (HH/SS/other) | 18/18/6 
    22504 Gap extend | 1 
    22505 SS matrix |  |  | H | S | O 
    22506 ---|---|---|--- 
    22507 H | 6 | -9 | -6 
    22508 S |  | 6 | -6 
    22509 O |  |  | 4 
    22510 Iteration cutoff | 2 
    22511  
    22512 Matchmaker combination, chain 9 (#98) with combination, chain 9 (#104),
    22513 sequence alignment score = 674.3 
    22514 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22515 0.000) 
    22516  
    22517 
    22518 > view matrix models
    22519 > #14,0.78198,0.3762,0.49697,-131.41,-0.29984,0.92604,-0.22921,89.83,-0.54645,0.030228,0.83695,131.14,#57,0.91085,0.40788,0.063149,-80.64,-0.41042,0.91127,0.033817,63.512,-0.043752,-0.05672,0.99743,21.181
    22520 
    22521 > view matrix models
    22522 > #14,0.78198,0.3762,0.49697,-131.22,-0.29984,0.92604,-0.22921,90.031,-0.54645,0.030228,0.83695,130.89,#57,0.91085,0.40788,0.063149,-80.451,-0.41042,0.91127,0.033817,63.713,-0.043752,-0.05672,0.99743,20.939
    22523 
    22524 > view matrix models
    22525 > #14,0.78198,0.3762,0.49697,-131.83,-0.29984,0.92604,-0.22921,90.173,-0.54645,0.030228,0.83695,131.39,#57,0.91085,0.40788,0.063149,-81.064,-0.41042,0.91127,0.033817,63.855,-0.043752,-0.05672,0.99743,21.439
    22526 
    22527 > close #101-104
    22528 
    22529 > combine #13-18,57
    22530 
    22531 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22532 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22533 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22534 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22535 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22536 to 'q' 
    22537 
    22538 > mmaker #101/9 to #95/9 pairing ss
    22539 
    22540 Parameters 
    22541 --- 
    22542 Chain pairing | ss 
    22543 Alignment algorithm | Needleman-Wunsch 
    22544 Similarity matrix | BLOSUM-62 
    22545 SS fraction | 0.3 
    22546 Gap open (HH/SS/other) | 18/18/6 
    22547 Gap extend | 1 
    22548 SS matrix |  |  | H | S | O 
    22549 ---|---|---|--- 
    22550 H | 6 | -9 | -6 
    22551 S |  | 6 | -6 
    22552 O |  |  | 4 
    22553 Iteration cutoff | 2 
    22554  
    22555 Matchmaker combination, chain 9 (#95) with combination, chain 9 (#101),
    22556 sequence alignment score = 674.3 
    22557 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22558 0.000) 
    22559  
    22560 
    22561 > combine #13-18,57
    22562 
    22563 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22564 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22565 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22566 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22567 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22568 to 'q' 
    22569 
    22570 > mmaker #102/9 to #96/9 pairing ss
    22571 
    22572 Parameters 
    22573 --- 
    22574 Chain pairing | ss 
    22575 Alignment algorithm | Needleman-Wunsch 
    22576 Similarity matrix | BLOSUM-62 
    22577 SS fraction | 0.3 
    22578 Gap open (HH/SS/other) | 18/18/6 
    22579 Gap extend | 1 
    22580 SS matrix |  |  | H | S | O 
    22581 ---|---|---|--- 
    22582 H | 6 | -9 | -6 
    22583 S |  | 6 | -6 
    22584 O |  |  | 4 
    22585 Iteration cutoff | 2 
    22586  
    22587 Matchmaker combination, chain 9 (#96) with combination, chain 9 (#102),
    22588 sequence alignment score = 674.3 
    22589 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22590 0.000) 
    22591  
    22592 
    22593 > combine #13-18,57
    22594 
    22595 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22596 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22597 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22598 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22599 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22600 to 'q' 
    22601 
    22602 > mmaker #103/9 to #97/9 pairing ss
    22603 
    22604 Parameters 
    22605 --- 
    22606 Chain pairing | ss 
    22607 Alignment algorithm | Needleman-Wunsch 
    22608 Similarity matrix | BLOSUM-62 
    22609 SS fraction | 0.3 
    22610 Gap open (HH/SS/other) | 18/18/6 
    22611 Gap extend | 1 
    22612 SS matrix |  |  | H | S | O 
    22613 ---|---|---|--- 
    22614 H | 6 | -9 | -6 
    22615 S |  | 6 | -6 
    22616 O |  |  | 4 
    22617 Iteration cutoff | 2 
    22618  
    22619 Matchmaker combination, chain 9 (#97) with combination, chain 9 (#103),
    22620 sequence alignment score = 674.3 
    22621 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22622 0.000) 
    22623  
    22624 
    22625 > combine #13-18,57
    22626 
    22627 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22628 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22629 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22630 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22631 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22632 to 'q' 
    22633 
    22634 > mmaker #104/9 to #98/9 pairing ss
    22635 
    22636 Parameters 
    22637 --- 
    22638 Chain pairing | ss 
    22639 Alignment algorithm | Needleman-Wunsch 
    22640 Similarity matrix | BLOSUM-62 
    22641 SS fraction | 0.3 
    22642 Gap open (HH/SS/other) | 18/18/6 
    22643 Gap extend | 1 
    22644 SS matrix |  |  | H | S | O 
    22645 ---|---|---|--- 
    22646 H | 6 | -9 | -6 
    22647 S |  | 6 | -6 
    22648 O |  |  | 4 
    22649 Iteration cutoff | 2 
    22650  
    22651 Matchmaker combination, chain 9 (#98) with combination, chain 9 (#104),
    22652 sequence alignment score = 674.3 
    22653 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22654 0.000) 
    22655  
    22656 
    22657 > select subtract #14
    22658 
    22659 100 atoms, 98 bonds, 1 pseudobond, 13 residues, 2 models selected 
    22660 
    22661 > select subtract #57
    22662 
    22663 Nothing selected 
    22664 
    22665 > select add #15
    22666 
    22667 105 atoms, 104 bonds, 15 residues, 1 model selected 
    22668 
    22669 > select subtract #15
    22670 
    22671 Nothing selected 
    22672 
    22673 > select add #14
    22674 
    22675 133 atoms, 132 bonds, 1 pseudobond, 17 residues, 2 models selected 
    22676 
    22677 > view matrix models
    22678 > #14,0.78198,0.3762,0.49697,-131.84,-0.29984,0.92604,-0.22921,90.531,-0.54645,0.030228,0.83695,131.4
    22679 
    22680 > view matrix models
    22681 > #14,0.78198,0.3762,0.49697,-131.95,-0.29984,0.92604,-0.22921,90.45,-0.54645,0.030228,0.83695,131.42
    22682 
    22683 > select subtract #14
    22684 
    22685 Nothing selected 
    22686 
    22687 > select add #16
    22688 
    22689 112 atoms, 111 bonds, 15 residues, 1 model selected 
    22690 
    22691 > select subtract #16
    22692 
    22693 Nothing selected 
    22694 
    22695 > select add #17
    22696 
    22697 127 atoms, 129 bonds, 15 residues, 1 model selected 
    22698 
    22699 > select subtract #17
    22700 
    22701 Nothing selected 
    22702 
    22703 > select add #18
    22704 
    22705 658 atoms, 657 bonds, 1 pseudobond, 84 residues, 2 models selected 
    22706 
    22707 > select subtract #18
    22708 
    22709 Nothing selected 
    22710 
    22711 > select add #13
    22712 
    22713 52 atoms, 51 bonds, 1 pseudobond, 8 residues, 2 models selected 
    22714 
    22715 > select subtract #13
    22716 
    22717 Nothing selected 
    22718 
    22719 > select add #13
    22720 
    22721 52 atoms, 51 bonds, 1 pseudobond, 8 residues, 2 models selected 
    22722 
    22723 > select subtract #13
    22724 
    22725 Nothing selected 
    22726 
    22727 > select add #14
    22728 
    22729 133 atoms, 132 bonds, 1 pseudobond, 17 residues, 2 models selected 
    22730 
    22731 > select subtract #14
    22732 
    22733 Nothing selected 
    22734 
    22735 > select add #15
    22736 
    22737 105 atoms, 104 bonds, 15 residues, 1 model selected 
    22738 
    22739 > select subtract #15
    22740 
    22741 Nothing selected 
    22742 
    22743 > select add #15
    22744 
    22745 105 atoms, 104 bonds, 15 residues, 1 model selected 
    22746 
    22747 > select add #17
    22748 
    22749 232 atoms, 233 bonds, 30 residues, 2 models selected 
    22750 
    22751 > select subtract #17
    22752 
    22753 105 atoms, 104 bonds, 15 residues, 1 model selected 
    22754 
    22755 > select subtract #15
    22756 
    22757 Nothing selected 
    22758 
    22759 > select add #15
    22760 
    22761 105 atoms, 104 bonds, 15 residues, 1 model selected 
    22762 
    22763 > select subtract #15
    22764 
    22765 Nothing selected 
    22766 
    22767 > select add #16
    22768 
    22769 112 atoms, 111 bonds, 15 residues, 1 model selected 
    22770 
    22771 > ui mousemode right "rotate selected models"
    22772 
    22773 > view matrix models
    22774 > #16,0.89852,-0.12472,-0.42084,132.4,0.042685,0.97907,-0.19902,59.968,0.43685,0.16086,0.88503,-96.24
    22775 
    22776 > ui mousemode right "translate selected models"
    22777 
    22778 > view matrix models
    22779 > #16,0.89852,-0.12472,-0.42084,131.74,0.042685,0.97907,-0.19902,60.111,0.43685,0.16086,0.88503,-95.209
    22780 
    22781 > ui mousemode right "rotate selected models"
    22782 
    22783 > view matrix models
    22784 > #16,0.89882,-0.14394,-0.41402,134.52,0.078653,0.98218,-0.17071,47.2,0.43121,0.12087,0.89412,-87.241
    22785 
    22786 > ui mousemode right "translate selected models"
    22787 
    22788 > view matrix models
    22789 > #16,0.89882,-0.14394,-0.41402,134.02,0.078653,0.98218,-0.17071,47.053,0.43121,0.12087,0.89412,-87.54
    22790 
    22791 > view matrix models
    22792 > #16,0.89882,-0.14394,-0.41402,134.16,0.078653,0.98218,-0.17071,46.883,0.43121,0.12087,0.89412,-87.64
    22793 
    22794 > view matrix models
    22795 > #16,0.89882,-0.14394,-0.41402,134.19,0.078653,0.98218,-0.17071,46.271,0.43121,0.12087,0.89412,-87.53
    22796 
    22797 > view matrix models
    22798 > #16,0.89882,-0.14394,-0.41402,134.23,0.078653,0.98218,-0.17071,46.565,0.43121,0.12087,0.89412,-87.617
    22799 
    22800 > select add #15
    22801 
    22802 217 atoms, 215 bonds, 30 residues, 2 models selected 
    22803 
    22804 > view matrix models
    22805 > #15,0.92461,-0.034563,-0.37933,99.117,0.042229,0.99904,0.011903,14.362,0.37856,-0.027025,0.92518,-54.058,#16,0.89882,-0.14394,-0.41402,134.25,0.078653,0.98218,-0.17071,46.252,0.43121,0.12087,0.89412,-87.552
    22806 
    22807 > view matrix models
    22808 > #15,0.92461,-0.034563,-0.37933,99.228,0.042229,0.99904,0.011903,14.312,0.37856,-0.027025,0.92518,-54.126,#16,0.89882,-0.14394,-0.41402,134.36,0.078653,0.98218,-0.17071,46.201,0.43121,0.12087,0.89412,-87.62
    22809 
    22810 > select add #14
    22811 
    22812 350 atoms, 347 bonds, 1 pseudobond, 47 residues, 4 models selected 
    22813 
    22814 > select subtract #14
    22815 
    22816 217 atoms, 215 bonds, 30 residues, 2 models selected 
    22817 
    22818 > select add #13
    22819 
    22820 269 atoms, 266 bonds, 1 pseudobond, 38 residues, 4 models selected 
    22821 
    22822 > select subtract #13
    22823 
    22824 217 atoms, 215 bonds, 30 residues, 2 models selected 
    22825 
    22826 > select add #17
    22827 
    22828 344 atoms, 344 bonds, 45 residues, 3 models selected 
    22829 
    22830 > select subtract #17
    22831 
    22832 217 atoms, 215 bonds, 30 residues, 2 models selected 
    22833 
    22834 > select add #18
    22835 
    22836 875 atoms, 872 bonds, 1 pseudobond, 114 residues, 4 models selected 
    22837 
    22838 > select subtract #15
    22839 
    22840 770 atoms, 768 bonds, 1 pseudobond, 99 residues, 3 models selected 
    22841 
    22842 > select subtract #16
    22843 
    22844 658 atoms, 657 bonds, 1 pseudobond, 84 residues, 2 models selected 
    22845 
    22846 > view matrix models
    22847 > #18,0.98014,-0.19508,-0.035582,47.805,0.19499,0.98079,-0.0058233,-8.6239,0.036034,-0.0012307,0.99935,-6.1662
    22848 
    22849 > ui tool show "Fit in Map"
    22850 
    22851 > fitmap #18 inMap #8
    22852 
    22853 Fit molecule copy of copy of copy of pointy-1pf.pdb (#18) to map
    22854 postprocess_masked330_onepf.mrc (#8) using 658 atoms 
    22855 average map value = 0.01805, steps = 48 
    22856 shifted from previous position = 1.95 
    22857 rotated from previous position = 0.98 degrees 
    22858 atoms outside contour = 279, contour level = 0.013277 
    22859  
    22860 Position of copy of copy of copy of pointy-1pf.pdb (#18) relative to
    22861 postprocess_masked330_onepf.mrc (#8) coordinates: 
    22862 Matrix rotation and translation 
    22863 0.97997231 -0.19614523 -0.03437031 46.27061492 
    22864 0.19662453 0.98041562 0.01113618 -11.38765170 
    22865 0.03151288 -0.01767119 0.99934712 -2.80786472 
    22866 Axis -0.07214511 -0.16499775 0.98365178 
    22867 Axis point 83.94589668 225.77573013 0.00000000 
    22868 Rotation angle (degrees) 11.51642155 
    22869 Shift along axis -4.22122289 
    22870  
    22871 
    22872 > view matrix models
    22873 > #18,0.97999,-0.19619,-0.03353,46.62,0.19666,0.98041,0.01107,-12.018,0.030701,-0.017443,0.99938,-2.5408
    22874 
    22875 > view matrix models
    22876 > #18,0.97999,-0.19619,-0.03353,46.499,0.19666,0.98041,0.01107,-11.939,0.030701,-0.017443,0.99938,-2.1649
    22877 
    22878 > view matrix models
    22879 > #18,0.97999,-0.19619,-0.03353,46.521,0.19666,0.98041,0.01107,-11.926,0.030701,-0.017443,0.99938,-2.1525
    22880 
    22881 > close #101-104
    22882 
    22883 > combine #13-18,57
    22884 
    22885 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22886 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22887 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22888 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22889 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22890 to 'q' 
    22891 
    22892 > mmaker #101/9 to #95/9 pairing ss
    22893 
    22894 Parameters 
    22895 --- 
    22896 Chain pairing | ss 
    22897 Alignment algorithm | Needleman-Wunsch 
    22898 Similarity matrix | BLOSUM-62 
    22899 SS fraction | 0.3 
    22900 Gap open (HH/SS/other) | 18/18/6 
    22901 Gap extend | 1 
    22902 SS matrix |  |  | H | S | O 
    22903 ---|---|---|--- 
    22904 H | 6 | -9 | -6 
    22905 S |  | 6 | -6 
    22906 O |  |  | 4 
    22907 Iteration cutoff | 2 
    22908  
    22909 Matchmaker combination, chain 9 (#95) with combination, chain 9 (#101),
    22910 sequence alignment score = 674.3 
    22911 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22912 0.000) 
    22913  
    22914 
    22915 > combine #13-18,57
    22916 
    22917 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22918 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22919 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22920 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22921 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22922 to 'q' 
    22923 
    22924 > mmaker #102/9 to #96/9 pairing ss
    22925 
    22926 Parameters 
    22927 --- 
    22928 Chain pairing | ss 
    22929 Alignment algorithm | Needleman-Wunsch 
    22930 Similarity matrix | BLOSUM-62 
    22931 SS fraction | 0.3 
    22932 Gap open (HH/SS/other) | 18/18/6 
    22933 Gap extend | 1 
    22934 SS matrix |  |  | H | S | O 
    22935 ---|---|---|--- 
    22936 H | 6 | -9 | -6 
    22937 S |  | 6 | -6 
    22938 O |  |  | 4 
    22939 Iteration cutoff | 2 
    22940  
    22941 Matchmaker combination, chain 9 (#96) with combination, chain 9 (#102),
    22942 sequence alignment score = 674.3 
    22943 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22944 0.000) 
    22945  
    22946 
    22947 > combine #13-18,57
    22948 
    22949 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22950 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22951 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22952 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22953 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22954 to 'q' 
    22955 
    22956 > mmaker #103/9 to #97/9 pairing ss
    22957 
    22958 Parameters 
    22959 --- 
    22960 Chain pairing | ss 
    22961 Alignment algorithm | Needleman-Wunsch 
    22962 Similarity matrix | BLOSUM-62 
    22963 SS fraction | 0.3 
    22964 Gap open (HH/SS/other) | 18/18/6 
    22965 Gap extend | 1 
    22966 SS matrix |  |  | H | S | O 
    22967 ---|---|---|--- 
    22968 H | 6 | -9 | -6 
    22969 S |  | 6 | -6 
    22970 O |  |  | 4 
    22971 Iteration cutoff | 2 
    22972  
    22973 Matchmaker combination, chain 9 (#97) with combination, chain 9 (#103),
    22974 sequence alignment score = 674.3 
    22975 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    22976 0.000) 
    22977  
    22978 
    22979 > combine #13-18,57
    22980 
    22981 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    22982 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    22983 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    22984 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    22985 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    22986 to 'q' 
    22987 
    22988 > mmaker #104/9 to #98/9 pairing ss
    22989 
    22990 Parameters 
    22991 --- 
    22992 Chain pairing | ss 
    22993 Alignment algorithm | Needleman-Wunsch 
    22994 Similarity matrix | BLOSUM-62 
    22995 SS fraction | 0.3 
    22996 Gap open (HH/SS/other) | 18/18/6 
    22997 Gap extend | 1 
    22998 SS matrix |  |  | H | S | O 
    22999 ---|---|---|--- 
    23000 H | 6 | -9 | -6 
    23001 S |  | 6 | -6 
    23002 O |  |  | 4 
    23003 Iteration cutoff | 2 
    23004  
    23005 Matchmaker combination, chain 9 (#98) with combination, chain 9 (#104),
    23006 sequence alignment score = 674.3 
    23007 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    23008 0.000) 
    23009  
    23010 
    23011 > select add #101
    23012 
    23013 1945 atoms, 1939 bonds, 5 pseudobonds, 251 residues, 4 models selected 
    23014 
    23015 > select subtract #101
    23016 
    23017 658 atoms, 657 bonds, 1 pseudobond, 84 residues, 2 models selected 
    23018 
    23019 > select add #102
    23020 
    23021 1945 atoms, 1939 bonds, 5 pseudobonds, 251 residues, 4 models selected 
    23022 
    23023 > select subtract #102
    23024 
    23025 658 atoms, 657 bonds, 1 pseudobond, 84 residues, 2 models selected 
    23026 
    23027 > select add #103
    23028 
    23029 1945 atoms, 1939 bonds, 5 pseudobonds, 251 residues, 4 models selected 
    23030 
    23031 > select subtract #103
    23032 
    23033 658 atoms, 657 bonds, 1 pseudobond, 84 residues, 2 models selected 
    23034 
    23035 > select add #104
    23036 
    23037 1945 atoms, 1939 bonds, 5 pseudobonds, 251 residues, 4 models selected 
    23038 
    23039 > select subtract #104
    23040 
    23041 658 atoms, 657 bonds, 1 pseudobond, 84 residues, 2 models selected 
    23042 
    23043 > select add #101
    23044 
    23045 1945 atoms, 1939 bonds, 5 pseudobonds, 251 residues, 4 models selected 
    23046 
    23047 > select subtract #18
    23048 
    23049 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23050 
    23051 > ui mousemode right "rotate selected models"
    23052 
    23053 > view matrix models
    23054 > #101,0.80844,0.58116,-0.093133,-73.736,-0.5623,0.80937,0.16952,68.201,0.1739,-0.084674,0.98112,-7.758
    23055 
    23056 > ui mousemode right "translate selected models"
    23057 
    23058 > view matrix models
    23059 > #101,0.80844,0.58116,-0.093133,-75.56,-0.5623,0.80937,0.16952,68.667,0.1739,-0.084674,0.98112,-8.4534
    23060 
    23061 > ui mousemode right "rotate selected models"
    23062 
    23063 > view matrix models
    23064 > #101,0.79497,0.59565,-0.11499,-71.917,-0.57272,0.7994,0.1815,70.678,0.20003,-0.078427,0.97665,-14.213
    23065 
    23066 > ui mousemode right "translate selected models"
    23067 
    23068 > view matrix models
    23069 > #101,0.79497,0.59565,-0.11499,-70.386,-0.57272,0.7994,0.1815,69.574,0.20003,-0.078427,0.97665,-13.835
    23070 
    23071 > view matrix models
    23072 > #101,0.79497,0.59565,-0.11499,-70.49,-0.57272,0.7994,0.1815,69.585,0.20003,-0.078427,0.97665,-13.864
    23073 
    23074 > view matrix models
    23075 > #101,0.79497,0.59565,-0.11499,-70.484,-0.57272,0.7994,0.1815,68.86,0.20003,-0.078427,0.97665,-13.603
    23076 
    23077 > view matrix models
    23078 > #101,0.79497,0.59565,-0.11499,-70.267,-0.57272,0.7994,0.1815,68.875,0.20003,-0.078427,0.97665,-13.561
    23079 
    23080 > select add #102
    23081 
    23082 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23083 
    23084 > select subtract #102
    23085 
    23086 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23087 
    23088 > select subtract #101
    23089 
    23090 Nothing selected 
    23091 
    23092 > select add #104
    23093 
    23094 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23095 
    23096 > select subtract #104
    23097 
    23098 Nothing selected 
    23099 
    23100 > select add #103
    23101 
    23102 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23103 
    23104 > ui mousemode right "rotate selected models"
    23105 
    23106 [Repeated 1 time(s)]
    23107 
    23108 > view matrix models
    23109 > #103,0.80142,0.5867,-0.11626,-69.811,-0.56577,0.80668,0.1708,42.871,0.19399,-0.071111,0.97842,-13.55
    23110 
    23111 > view matrix models
    23112 > #103,0.80485,0.58199,-0.11619,-69.422,-0.56098,0.80996,0.17107,41.111,0.19367,-0.072505,0.97838,-13.157
    23113 
    23114 > select subtract #103
    23115 
    23116 Nothing selected 
    23117 
    23118 > select add #104
    23119 
    23120 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23121 
    23122 > view matrix models
    23123 > #104,0.79542,0.60048,-0.082085,-75.1,-0.58658,0.79682,0.14493,155.74,0.15244,-0.067132,0.98603,-9.473
    23124 
    23125 > ui mousemode right "translate selected models"
    23126 
    23127 > view matrix models
    23128 > #104,0.79542,0.60048,-0.082085,-75.392,-0.58658,0.79682,0.14493,155.75,0.15244,-0.067132,0.98603,-8.5363
    23129 
    23130 > view matrix models
    23131 > #104,0.79542,0.60048,-0.082085,-75.809,-0.58658,0.79682,0.14493,153.8,0.15244,-0.067132,0.98603,-9.0262
    23132 
    23133 > view matrix models
    23134 > #104,0.79542,0.60048,-0.082085,-75.842,-0.58658,0.79682,0.14493,153.72,0.15244,-0.067132,0.98603,-9.0371
    23135 
    23136 > ui mousemode right "rotate selected models"
    23137 
    23138 > view matrix models
    23139 > #104,0.81215,0.53815,-0.22539,-36.574,-0.56853,0.81675,-0.098491,193.48,0.13108,0.20813,0.96928,-64.964
    23140 
    23141 > view matrix models
    23142 > #104,0.85378,0.47465,-0.21393,-32.469,-0.5024,0.8589,-0.099396,170.79,0.13656,0.19234,0.97178,-62.906
    23143 
    23144 > view matrix models
    23145 > #104,0.86407,0.45592,-0.21334,-30.313,-0.48316,0.8701,-0.097431,163.99,0.14121,0.18727,0.97211,-62.724
    23146 
    23147 > view matrix models
    23148 > #104,0.86035,0.46967,-0.19802,-35.761,-0.49448,0.86333,-0.10072,168.45,0.12365,0.18457,0.97501,-59.182
    23149 
    23150 > view matrix models
    23151 > #104,0.86504,0.4957,-0.077352,-66.463,-0.50145,0.85911,-0.10236,171.13,0.015716,0.12733,0.99174,-27.805
    23152 
    23153 > undo
    23154 
    23155 > view matrix models
    23156 > #104,0.88191,0.46827,0.054442,-89.452,-0.46279,0.88196,-0.089236,155.59,-0.089803,0.053502,0.99452,9.6628
    23157 
    23158 > undo
    23159 
    23160 > view matrix models
    23161 > #104,0.8061,0.55854,-0.19552,-45.954,-0.53392,0.82894,0.16671,131.55,0.25519,-0.029987,0.96643,-34.183
    23162 
    23163 > view matrix models
    23164 > #104,0.81849,0.55488,-0.14892,-56.754,-0.533,0.83014,0.16366,131.69,0.21444,-0.054575,0.97521,-22.136
    23165 
    23166 > select subtract #104
    23167 
    23168 Nothing selected 
    23169 
    23170 > select add #103
    23171 
    23172 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23173 
    23174 > select subtract #103
    23175 
    23176 Nothing selected 
    23177 
    23178 > select add #103
    23179 
    23180 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23181 
    23182 > select subtract #103
    23183 
    23184 Nothing selected 
    23185 
    23186 > select add #102
    23187 
    23188 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23189 
    23190 > select subtract #102
    23191 
    23192 Nothing selected 
    23193 
    23194 > select add #101
    23195 
    23196 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23197 
    23198 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    23199 > MRCLaboratoryofMolecularBiology/Documents/Carter
    23200 > Lab/Diorge/Membranes/Fit14-21.cxs"
    23201 
    23202 > view matrix models
    23203 > #101,0.82753,0.5487,-0.11888,-65.15,-0.52246,0.83014,0.19471,49.186,0.20552,-0.099021,0.97363,-9.3102
    23204 
    23205 > view matrix models
    23206 > #101,0.82892,0.51235,-0.22447,-36.248,-0.51277,0.85635,0.061053,67.538,0.22351,0.064493,0.97257,-50.384
    23207 
    23208 > ui mousemode right "translate selected models"
    23209 
    23210 > view matrix models
    23211 > #101,0.82892,0.51235,-0.22447,-34.741,-0.51277,0.85635,0.061053,69.194,0.22351,0.064493,0.97257,-52.202
    23212 
    23213 > select add #102
    23214 
    23215 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23216 
    23217 > select subtract #102
    23218 
    23219 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23220 
    23221 > select subtract #101
    23222 
    23223 Nothing selected 
    23224 
    23225 > select add #104
    23226 
    23227 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23228 
    23229 > select subtract #104
    23230 
    23231 Nothing selected 
    23232 
    23233 > select add #101
    23234 
    23235 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23236 
    23237 > select subtract #101
    23238 
    23239 Nothing selected 
    23240 
    23241 > select add #102
    23242 
    23243 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23244 
    23245 > select subtract #102
    23246 
    23247 Nothing selected 
    23248 
    23249 > select add #103
    23250 
    23251 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23252 
    23253 > select subtract #103
    23254 
    23255 Nothing selected 
    23256 
    23257 > select add #103
    23258 
    23259 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23260 
    23261 > view matrix models
    23262 > #103,0.80485,0.58199,-0.11619,-69.266,-0.56098,0.80996,0.17107,41.204,0.19367,-0.072505,0.97838,-13.061
    23263 
    23264 > ui mousemode right "rotate selected models"
    23265 
    23266 > view matrix models
    23267 > #103,0.79746,0.55295,-0.24146,-36.424,-0.54507,0.83183,0.10472,46.063,0.25876,0.048101,0.96474,-51.135
    23268 
    23269 > view matrix models
    23270 > #103,0.77845,0.58087,-0.23792,-39.779,-0.57706,0.8114,0.092932,59.461,0.24703,0.064952,0.96683,-53.098
    23271 
    23272 > view matrix models
    23273 > #103,0.77817,0.53177,-0.33418,-9.4397,-0.56103,0.82773,0.01073,68.697,0.28232,0.17914,0.94245,-81.646
    23274 
    23275 > view matrix models
    23276 > #103,0.80026,0.54725,-0.24516,-34.938,-0.56483,0.82521,-0.0016921,72.482,0.20138,0.13983,0.96948,-61.805
    23277 
    23278 > view matrix models
    23279 > #103,0.78771,0.56444,-0.24681,-36.082,-0.58336,0.8122,-0.0043457,79.688,0.19801,0.1474,0.96905,-62.796
    23280 
    23281 > ui mousemode right "translate selected models"
    23282 
    23283 > view matrix models
    23284 > #103,0.78771,0.56444,-0.24681,-35.349,-0.58336,0.8122,-0.0043457,82.149,0.19801,0.1474,0.96905,-62.705
    23285 
    23286 > ui mousemode right "rotate selected models"
    23287 
    23288 > view matrix models
    23289 > #103,0.75593,0.42676,-0.49642,51.886,-0.57546,0.79471,-0.1931,121.79,0.3121,0.43164,0.84633,-126.78
    23290 
    23291 > ui mousemode right "translate selected models"
    23292 
    23293 > view matrix models
    23294 > #103,0.75593,0.42676,-0.49642,51.325,-0.57546,0.79471,-0.1931,122.87,0.3121,0.43164,0.84633,-126.99
    23295 
    23296 > ui mousemode right "rotate selected models"
    23297 
    23298 > view matrix models
    23299 > #103,0.77624,0.39335,-0.49267,54.252,-0.49604,0.86339,-0.092218,71.363,0.38909,0.31597,0.86532,-119.37
    23300 
    23301 > ui mousemode right "translate selected models"
    23302 
    23303 > view matrix models
    23304 > #103,0.77624,0.39335,-0.49267,54.558,-0.49604,0.86339,-0.092218,71.241,0.38909,0.31597,0.86532,-120.35
    23305 
    23306 > ui mousemode right "rotate selected models"
    23307 
    23308 > view matrix models
    23309 > #103,0.75473,0.42642,-0.49854,52.365,-0.50483,0.86282,-0.026256,60.131,0.41895,0.27149,0.86647,-116.26
    23310 
    23311 > view matrix models
    23312 > #103,0.68409,0.70255,-0.19607,-56.83,-0.70631,0.70515,0.062354,119.11,0.18207,0.095831,0.97861,-50.717
    23313 
    23314 > view matrix models
    23315 > #103,0.85274,0.47253,-0.22259,-32.116,-0.44083,0.87965,0.17859,3.1698,0.28019,-0.054163,0.95841,-31.672
    23316 
    23317 > view matrix models
    23318 > #103,0.83762,0.50374,-0.21128,-38.533,-0.47496,0.86267,0.17381,14.815,0.26982,-0.04524,0.96185,-32.342
    23319 
    23320 > view matrix models
    23321 > #103,0.78528,0.59281,-0.17867,-55.081,-0.57203,0.80507,0.15699,50.723,0.2369,-0.021076,0.9713,-33.229
    23322 
    23323 > ui mousemode right "translate selected models"
    23324 
    23325 > view matrix models
    23326 > #103,0.78528,0.59281,-0.17867,-56.004,-0.57203,0.80507,0.15699,50.275,0.2369,-0.021076,0.9713,-33.629
    23327 
    23328 > view matrix models
    23329 > #103,0.78528,0.59281,-0.17867,-56.029,-0.57203,0.80507,0.15699,50.305,0.2369,-0.021076,0.9713,-33.634
    23330 
    23331 > view matrix models
    23332 > #103,0.78528,0.59281,-0.17867,-56.182,-0.57203,0.80507,0.15699,49.56,0.2369,-0.021076,0.9713,-33.796
    23333 
    23334 > select add #102
    23335 
    23336 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23337 
    23338 > select subtract #102
    23339 
    23340 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23341 
    23342 > select subtract #103
    23343 
    23344 Nothing selected 
    23345 
    23346 > select add #101
    23347 
    23348 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23349 
    23350 > view matrix models
    23351 > #101,0.82892,0.51235,-0.22447,-35.419,-0.51277,0.85635,0.061053,69.473,0.22351,0.064493,0.97257,-51.104
    23352 
    23353 > undo
    23354 
    23355 > ui mousemode right "rotate selected models"
    23356 
    23357 > view matrix models
    23358 > #101,0.80555,0.58597,-0.08788,-73.973,-0.55741,0.79973,0.223,59.236,0.20095,-0.13065,0.97085,-2.3782
    23359 
    23360 > view matrix models
    23361 > #101,0.81593,0.5756,-0.054161,-80.288,-0.55641,0.80725,0.19685,62.451,0.15703,-0.13048,0.97894,4.728
    23362 
    23363 > view matrix models
    23364 > #101,0.81601,0.57363,-0.071314,-76.469,-0.55588,0.81256,0.17536,65.354,0.15854,-0.10346,0.98192,-2.3917
    23365 
    23366 > ui mousemode right "translate selected models"
    23367 
    23368 > view matrix models
    23369 > #101,0.81601,0.57363,-0.071314,-78.282,-0.55588,0.81256,0.17536,65.248,0.15854,-0.10346,0.98192,-2.5244
    23370 
    23371 > select add #102
    23372 
    23373 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23374 
    23375 > select subtract #102
    23376 
    23377 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23378 
    23379 > select subtract #101
    23380 
    23381 Nothing selected 
    23382 
    23383 > select add #103
    23384 
    23385 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23386 
    23387 > view matrix models
    23388 > #103,0.78528,0.59281,-0.17867,-58.069,-0.57203,0.80507,0.15699,50.754,0.2369,-0.021076,0.9713,-34.61
    23389 
    23390 > view matrix models
    23391 > #103,0.78528,0.59281,-0.17867,-58.777,-0.57203,0.80507,0.15699,50.86,0.2369,-0.021076,0.9713,-34.839
    23392 
    23393 > undo
    23394 
    23395 > ui mousemode right "rotate selected models"
    23396 
    23397 > view matrix models
    23398 > #103,0.8007,0.56861,-0.18855,-53.614,-0.5458,0.82218,0.16166,40.67,0.24694,-0.026532,0.96867,-34.83
    23399 
    23400 > ui mousemode right "translate selected models"
    23401 
    23402 > view matrix models
    23403 > #103,0.8007,0.56861,-0.18855,-53.862,-0.5458,0.82218,0.16166,39.287,0.24694,-0.026532,0.96867,-35.161
    23404 
    23405 > select clear
    23406 
    23407 > select add #103
    23408 
    23409 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23410 
    23411 > select subtract #103
    23412 
    23413 Nothing selected 
    23414 
    23415 > select add #104
    23416 
    23417 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23418 
    23419 > ui mousemode right "rotate selected models"
    23420 
    23421 > view matrix models
    23422 > #104,0.82649,0.55039,-0.11825,-63.351,-0.53164,0.83219,0.15756,132.15,0.18512,-0.067354,0.9804,-14.38
    23423 
    23424 > ui mousemode right "translate selected models"
    23425 
    23426 > view matrix models
    23427 > #104,0.82649,0.55039,-0.11825,-63.609,-0.53164,0.83219,0.15756,132.13,0.18512,-0.067354,0.9804,-13.607
    23428 
    23429 > view matrix models
    23430 > #104,0.82649,0.55039,-0.11825,-70.353,-0.53164,0.83219,0.15756,133.53,0.18512,-0.067354,0.9804,-16.061
    23431 
    23432 > view matrix models
    23433 > #104,0.82649,0.55039,-0.11825,-69.66,-0.53164,0.83219,0.15756,133.51,0.18512,-0.067354,0.9804,-15.803
    23434 
    23435 > select add #102
    23436 
    23437 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23438 
    23439 > select add #101
    23440 
    23441 3861 atoms, 3846 bonds, 12 pseudobonds, 501 residues, 6 models selected 
    23442 
    23443 > select subtract #102
    23444 
    23445 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23446 
    23447 > select subtract #104
    23448 
    23449 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23450 
    23451 > view matrix models
    23452 > #101,0.81601,0.57363,-0.071314,-75.165,-0.55588,0.81256,0.17536,64.36,0.15854,-0.10346,0.98192,-1.4467
    23453 
    23454 > select add #104
    23455 
    23456 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23457 
    23458 > select subtract #104
    23459 
    23460 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23461 
    23462 > select subtract #101
    23463 
    23464 Nothing selected 
    23465 
    23466 > select add #102
    23467 
    23468 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23469 
    23470 > select subtract #102
    23471 
    23472 Nothing selected 
    23473 
    23474 > select add #103
    23475 
    23476 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23477 
    23478 > view matrix models
    23479 > #103,0.8007,0.56861,-0.18855,-50.005,-0.5458,0.82218,0.16166,38.358,0.24694,-0.026532,0.96867,-33.81
    23480 
    23481 > select add #104
    23482 
    23483 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23484 
    23485 > select subtract #103
    23486 
    23487 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23488 
    23489 > view matrix models
    23490 > #104,0.82649,0.55039,-0.11825,-67.368,-0.53164,0.83219,0.15756,131.5,0.18512,-0.067354,0.9804,-15.39
    23491 
    23492 > view matrix models
    23493 > #104,0.82649,0.55039,-0.11825,-67.613,-0.53164,0.83219,0.15756,131.66,0.18512,-0.067354,0.9804,-15.438
    23494 
    23495 > select add #102
    23496 
    23497 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23498 
    23499 > select subtract #104
    23500 
    23501 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23502 
    23503 > view matrix models
    23504 > #102,0.77423,0.61284,-0.15811,-58.606,-0.58513,0.7883,0.19026,123.39,0.24124,-0.054788,0.96892,-26.589
    23505 
    23506 > view matrix models
    23507 > #102,0.77423,0.61284,-0.15811,-62.145,-0.58513,0.7883,0.19026,123.95,0.24124,-0.054788,0.96892,-27.657
    23508 
    23509 > view matrix models
    23510 > #102,0.77423,0.61284,-0.15811,-61.507,-0.58513,0.7883,0.19026,122.03,0.24124,-0.054788,0.96892,-27.564
    23511 
    23512 > ui mousemode right "rotate selected models"
    23513 
    23514 > view matrix models
    23515 > #102,0.77364,0.61364,-0.15786,-61.624,-0.586,0.7877,0.19011,122.37,0.24101,-0.054573,0.96899,-27.582
    23516 
    23517 > select add #104
    23518 
    23519 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23520 
    23521 > select subtract #102
    23522 
    23523 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23524 
    23525 > view matrix models
    23526 > #104,0.80201,0.58676,-0.11177,-72.406,-0.57023,0.80783,0.14914,146.61,0.1778,-0.055881,0.98248,-17.035
    23527 
    23528 > ui mousemode right "translate selected models"
    23529 
    23530 > ui mousemode right "move picked models"
    23531 
    23532 > ui mousemode right "rotate selected models"
    23533 
    23534 > view matrix models
    23535 > #104,0.8447,0.52077,-0.12365,-63.339,-0.50018,0.85025,0.164,119.97,0.19055,-0.076684,0.97868,-14.026
    23536 
    23537 > select clear
    23538 
    23539 [Repeated 1 time(s)]
    23540 
    23541 > select add #102
    23542 
    23543 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23544 
    23545 > select subtract #102
    23546 
    23547 Nothing selected 
    23548 
    23549 > select add #101
    23550 
    23551 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23552 
    23553 > ui mousemode right "translate selected models"
    23554 
    23555 > view matrix models
    23556 > #101,0.81601,0.57363,-0.071314,-76.031,-0.55588,0.81256,0.17536,63.79,0.15854,-0.10346,0.98192,-1.7113
    23557 
    23558 > ui mousemode right "rotate selected models"
    23559 
    23560 > view matrix models
    23561 > #101,0.81197,0.54629,-0.20559,-42.476,-0.55764,0.83007,0.0032751,93.997,0.17245,0.11199,0.97863,-53.512
    23562 
    23563 > ui mousemode right "translate selected models"
    23564 
    23565 > view matrix models
    23566 > #101,0.81197,0.54629,-0.20559,-41.209,-0.55764,0.83007,0.0032751,94.665,0.17245,0.11199,0.97863,-52.846
    23567 
    23568 > ui mousemode right "rotate selected models"
    23569 
    23570 > view matrix models
    23571 > #101,0.7973,0.56778,-0.20482,-43.397,-0.563,0.82189,0.086746,81.179,0.21759,0.046152,0.97495,-45.919
    23572 
    23573 > volume #8 level 0.01539
    23574 
    23575 > ui mousemode right "translate selected models"
    23576 
    23577 > view matrix models
    23578 > #101,0.7973,0.56778,-0.20482,-48.697,-0.563,0.82189,0.086746,83.928,0.21759,0.046152,0.97495,-46.936
    23579 
    23580 > ui mousemode right "rotate selected models"
    23581 
    23582 > view matrix models
    23583 > #101,0.8349,0.53536,-0.12776,-63.881,-0.49655,0.83278,0.24477,37.07,0.23744,-0.14092,0.96113,-5.0242
    23584 
    23585 > view matrix models
    23586 > #101,0.83852,0.52715,-0.13785,-60.72,-0.49607,0.84323,0.20709,41.988,0.22541,-0.10527,0.96856,-12.316
    23587 
    23588 > select add #104
    23589 
    23590 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23591 
    23592 > select subtract #104
    23593 
    23594 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23595 
    23596 > select subtract #101
    23597 
    23598 Nothing selected 
    23599 
    23600 > select add #102
    23601 
    23602 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23603 
    23604 > select subtract #102
    23605 
    23606 Nothing selected 
    23607 
    23608 > select add #103
    23609 
    23610 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23611 
    23612 > ui mousemode right "rotate selected models"
    23613 
    23614 > view matrix models
    23615 > #103,0.78762,0.58824,-0.18337,-52.949,-0.53828,0.80172,0.25979,22.252,0.29983,-0.10592,0.9481,-21.973
    23616 
    23617 > ui mousemode right "translate selected models"
    23618 
    23619 > view matrix models
    23620 > #103,0.78762,0.58824,-0.18337,-53.487,-0.53828,0.80172,0.25979,20.675,0.29983,-0.10592,0.9481,-22.346
    23621 
    23622 > ui mousemode right "translate selected models"
    23623 
    23624 > ui mousemode right "rotate selected models"
    23625 
    23626 > view matrix models
    23627 > #103,0.82867,0.5357,-0.16229,-53.689,-0.48754,0.83321,0.26091,3.1004,0.27499,-0.13709,0.95162,-10.912
    23628 
    23629 > select add #102
    23630 
    23631 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23632 
    23633 > select add #101
    23634 
    23635 3861 atoms, 3846 bonds, 12 pseudobonds, 501 residues, 6 models selected 
    23636 
    23637 > select subtract #102
    23638 
    23639 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23640 
    23641 > select subtract #103
    23642 
    23643 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23644 
    23645 > view matrix models
    23646 > #101,0.77783,0.61967,-0.10481,-76.49,-0.6006,0.78204,0.16642,84.903,0.1851,-0.066499,0.98047,-15.581
    23647 
    23648 > ui mousemode right "translate selected models"
    23649 
    23650 > view matrix models
    23651 > #101,0.77783,0.61967,-0.10481,-75.915,-0.6006,0.78204,0.16642,85.502,0.1851,-0.066499,0.98047,-15.325
    23652 
    23653 > view matrix models
    23654 > #101,0.77783,0.61967,-0.10481,-76.724,-0.6006,0.78204,0.16642,84.754,0.1851,-0.066499,0.98047,-15.386
    23655 
    23656 > view matrix models
    23657 > #101,0.77783,0.61967,-0.10481,-75.969,-0.6006,0.78204,0.16642,85.285,0.1851,-0.066499,0.98047,-15.391
    23658 
    23659 > select add #103
    23660 
    23661 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23662 
    23663 > select subtract #103
    23664 
    23665 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23666 
    23667 > select add #102
    23668 
    23669 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23670 
    23671 > select subtract #101
    23672 
    23673 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23674 
    23675 > select add #101
    23676 
    23677 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23678 
    23679 > select subtract #102
    23680 
    23681 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23682 
    23683 > select subtract #101
    23684 
    23685 Nothing selected 
    23686 
    23687 > select add #104
    23688 
    23689 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23690 
    23691 > select subtract #104
    23692 
    23693 Nothing selected 
    23694 
    23695 > select add #101
    23696 
    23697 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23698 
    23699 > select subtract #101
    23700 
    23701 Nothing selected 
    23702 
    23703 > select add #102
    23704 
    23705 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23706 
    23707 > select subtract #102
    23708 
    23709 Nothing selected 
    23710 
    23711 > select add #103
    23712 
    23713 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23714 
    23715 > ui mousemode right "rotate selected models"
    23716 
    23717 > view matrix models
    23718 > #103,0.83718,0.51405,-0.18678,-45.566,-0.48869,0.85641,0.1666,16.554,0.2456,-0.048197,0.96817,-28.822
    23719 
    23720 > view matrix models
    23721 > #103,0.84016,0.5063,-0.19441,-42.868,-0.48845,0.86217,0.13445,21.512,0.23569,-0.017996,0.97166,-34.502
    23722 
    23723 > view matrix models
    23724 > #103,0.86722,0.44855,-0.21616,-30.651,-0.42587,0.89313,0.14474,-0.10397,0.25799,-0.033461,0.96557,-34.172
    23725 
    23726 > view matrix models
    23727 > #103,0.86877,0.44307,-0.22118,-28.707,-0.42585,0.8964,0.123,3.4198,0.25277,-0.012665,0.96744,-38.298
    23728 
    23729 > view matrix models
    23730 > #103,0.82323,0.52778,-0.20917,-41.546,-0.50896,0.84934,0.13995,27.465,0.25152,-0.0087531,0.96781,-39.024
    23731 
    23732 > view matrix models
    23733 > #103,0.81944,0.5348,-0.20619,-42.998,-0.50902,0.84437,0.16711,23.274,0.26347,-0.03198,0.96414,-35.322
    23734 
    23735 > ui mousemode right "translate selected models"
    23736 
    23737 > view matrix models
    23738 > #103,0.81944,0.5348,-0.20619,-43.388,-0.50902,0.84437,0.16711,23.441,0.26347,-0.03198,0.96414,-34.055
    23739 
    23740 > select clear
    23741 
    23742 > select add #104
    23743 
    23744 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23745 
    23746 > select subtract #104
    23747 
    23748 Nothing selected 
    23749 
    23750 > select add #103
    23751 
    23752 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23753 
    23754 > ui mousemode right "translate selected models"
    23755 
    23756 > view matrix models
    23757 > #103,0.81944,0.5348,-0.20619,-47.481,-0.50902,0.84437,0.16711,25.285,0.26347,-0.03198,0.96414,-36.162
    23758 
    23759 > ui mousemode right "rotate selected models"
    23760 
    23761 > view matrix models
    23762 > #103,0.8074,0.55342,-0.20451,-49.713,-0.51479,0.83015,0.21409,20.457,0.28826,-0.067578,0.95517,-31.117
    23763 
    23764 > view matrix models
    23765 > #103,0.81001,0.5482,-0.20823,-48.294,-0.51539,0.8349,0.19316,23.606,0.27974,-0.049138,0.95882,-34.394
    23766 
    23767 > select clear
    23768 
    23769 > combine #13-18,57
    23770 
    23771 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    23772 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    23773 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    23774 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    23775 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    23776 to 'q' 
    23777 
    23778 > mmaker #106/9 to #101/9 pairing ss
    23779 
    23780 Parameters 
    23781 --- 
    23782 Chain pairing | ss 
    23783 Alignment algorithm | Needleman-Wunsch 
    23784 Similarity matrix | BLOSUM-62 
    23785 SS fraction | 0.3 
    23786 Gap open (HH/SS/other) | 18/18/6 
    23787 Gap extend | 1 
    23788 SS matrix |  |  | H | S | O 
    23789 ---|---|---|--- 
    23790 H | 6 | -9 | -6 
    23791 S |  | 6 | -6 
    23792 O |  |  | 4 
    23793 Iteration cutoff | 2 
    23794  
    23795 Matchmaker combination, chain 9 (#101) with combination, chain 9 (#106),
    23796 sequence alignment score = 674.3 
    23797 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    23798 0.000) 
    23799  
    23800 
    23801 > combine #13-18,57
    23802 
    23803 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    23804 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    23805 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    23806 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    23807 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    23808 to 'q' 
    23809 
    23810 > mmaker #107/9 to #102/9 pairing ss
    23811 
    23812 Parameters 
    23813 --- 
    23814 Chain pairing | ss 
    23815 Alignment algorithm | Needleman-Wunsch 
    23816 Similarity matrix | BLOSUM-62 
    23817 SS fraction | 0.3 
    23818 Gap open (HH/SS/other) | 18/18/6 
    23819 Gap extend | 1 
    23820 SS matrix |  |  | H | S | O 
    23821 ---|---|---|--- 
    23822 H | 6 | -9 | -6 
    23823 S |  | 6 | -6 
    23824 O |  |  | 4 
    23825 Iteration cutoff | 2 
    23826  
    23827 Matchmaker combination, chain 9 (#102) with combination, chain 9 (#107),
    23828 sequence alignment score = 674.3 
    23829 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    23830 0.000) 
    23831  
    23832 
    23833 > combine #13-18,57
    23834 
    23835 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    23836 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    23837 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    23838 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    23839 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    23840 to 'q' 
    23841 
    23842 > mmaker #108/9 to #103/9 pairing ss
    23843 
    23844 Parameters 
    23845 --- 
    23846 Chain pairing | ss 
    23847 Alignment algorithm | Needleman-Wunsch 
    23848 Similarity matrix | BLOSUM-62 
    23849 SS fraction | 0.3 
    23850 Gap open (HH/SS/other) | 18/18/6 
    23851 Gap extend | 1 
    23852 SS matrix |  |  | H | S | O 
    23853 ---|---|---|--- 
    23854 H | 6 | -9 | -6 
    23855 S |  | 6 | -6 
    23856 O |  |  | 4 
    23857 Iteration cutoff | 2 
    23858  
    23859 Matchmaker combination, chain 9 (#103) with combination, chain 9 (#108),
    23860 sequence alignment score = 674.3 
    23861 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    23862 0.000) 
    23863  
    23864 
    23865 > combine #13-18,57
    23866 
    23867 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    23868 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    23869 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    23870 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    23871 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    23872 to 'q' 
    23873 
    23874 > mmaker #109/9 to #104/9 pairing ss
    23875 
    23876 Parameters 
    23877 --- 
    23878 Chain pairing | ss 
    23879 Alignment algorithm | Needleman-Wunsch 
    23880 Similarity matrix | BLOSUM-62 
    23881 SS fraction | 0.3 
    23882 Gap open (HH/SS/other) | 18/18/6 
    23883 Gap extend | 1 
    23884 SS matrix |  |  | H | S | O 
    23885 ---|---|---|--- 
    23886 H | 6 | -9 | -6 
    23887 S |  | 6 | -6 
    23888 O |  |  | 4 
    23889 Iteration cutoff | 2 
    23890  
    23891 Matchmaker combination, chain 9 (#104) with combination, chain 9 (#109),
    23892 sequence alignment score = 674.3 
    23893 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    23894 0.000) 
    23895  
    23896 
    23897 > hide #!104 models
    23898 
    23899 > hide #!103 models
    23900 
    23901 > hide #!102 models
    23902 
    23903 > hide #!101 models
    23904 
    23905 > close #106-109
    23906 
    23907 > show #!101 models
    23908 
    23909 > show #!102 models
    23910 
    23911 > show #!103 models
    23912 
    23913 > show #!104 models
    23914 
    23915 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    23916 > MRCLaboratoryofMolecularBiology/Documents/Carter
    23917 > Lab/Diorge/Membranes/Fit14-21.cxs"
    23918 
    23919 > select add #102
    23920 
    23921 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23922 
    23923 > select subtract #102
    23924 
    23925 Nothing selected 
    23926 
    23927 > select add #103
    23928 
    23929 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23930 
    23931 > select subtract #103
    23932 
    23933 Nothing selected 
    23934 
    23935 > select add #101
    23936 
    23937 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23938 
    23939 > view matrix models
    23940 > #101,0.77992,0.58322,-0.2271,-43.894,-0.59868,0.80099,0.00099949,113.12,0.18248,0.13518,0.97387,-60.078
    23941 
    23942 > ui mousemode right "translate selected models"
    23943 
    23944 [Repeated 1 time(s)]
    23945 
    23946 > view matrix models
    23947 > #101,0.77992,0.58322,-0.2271,-43.682,-0.59868,0.80099,0.00099949,113.25,0.18248,0.13518,0.97387,-60.527
    23948 
    23949 > view matrix models
    23950 > #101,0.77992,0.58322,-0.2271,-43.489,-0.59868,0.80099,0.00099949,113.22,0.18248,0.13518,0.97387,-60.868
    23951 
    23952 > view matrix models
    23953 > #101,0.77992,0.58322,-0.2271,-42.774,-0.59868,0.80099,0.00099949,113.2,0.18248,0.13518,0.97387,-60.504
    23954 
    23955 > view matrix models
    23956 > #101,0.77992,0.58322,-0.2271,-44.399,-0.59868,0.80099,0.00099949,112.47,0.18248,0.13518,0.97387,-61.084
    23957 
    23958 > view matrix models
    23959 > #101,0.77992,0.58322,-0.2271,-44.834,-0.59868,0.80099,0.00099949,112.47,0.18248,0.13518,0.97387,-61.233
    23960 
    23961 > view matrix models
    23962 > #101,0.77992,0.58322,-0.2271,-44.42,-0.59868,0.80099,0.00099949,112.34,0.18248,0.13518,0.97387,-61.885
    23963 
    23964 > view matrix models
    23965 > #101,0.77992,0.58322,-0.2271,-42.856,-0.59868,0.80099,0.00099949,113.73,0.18248,0.13518,0.97387,-61.964
    23966 
    23967 > ui mousemode right "rotate selected models"
    23968 
    23969 > view matrix models
    23970 > #101,0.76896,0.60685,-0.2011,-51.242,-0.57829,0.79437,0.18587,74.786,0.27254,-0.026628,0.96177,-40.185
    23971 
    23972 > ui mousemode right "translate selected models"
    23973 
    23974 > view matrix models
    23975 > #101,0.76896,0.60685,-0.2011,-52.054,-0.57829,0.79437,0.18587,74.635,0.27254,-0.026628,0.96177,-38.497
    23976 
    23977 > view matrix models
    23978 > #101,0.76896,0.60685,-0.2011,-52.008,-0.57829,0.79437,0.18587,75.196,0.27254,-0.026628,0.96177,-38.657
    23979 
    23980 > view matrix models
    23981 > #101,0.76896,0.60685,-0.2011,-52.079,-0.57829,0.79437,0.18587,74.808,0.27254,-0.026628,0.96177,-38.412
    23982 
    23983 > view matrix models
    23984 > #101,0.76896,0.60685,-0.2011,-51.861,-0.57829,0.79437,0.18587,74.441,0.27254,-0.026628,0.96177,-38.605
    23985 
    23986 > view matrix models
    23987 > #101,0.76896,0.60685,-0.2011,-51.589,-0.57829,0.79437,0.18587,74.228,0.27254,-0.026628,0.96177,-38.492
    23988 
    23989 > view matrix models
    23990 > #101,0.76896,0.60685,-0.2011,-50.82,-0.57829,0.79437,0.18587,73.138,0.27254,-0.026628,0.96177,-38.075
    23991 
    23992 > select add #102
    23993 
    23994 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    23995 
    23996 > select subtract #102
    23997 
    23998 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    23999 
    24000 > select subtract #101
    24001 
    24002 Nothing selected 
    24003 
    24004 > select add #101
    24005 
    24006 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24007 
    24008 > ui mousemode right "rotate selected models"
    24009 
    24010 > view matrix models
    24011 > #101,0.78459,0.59703,-0.16722,-58.342,-0.55232,0.79557,0.24901,55.256,0.2817,-0.10301,0.95396,-20.743
    24012 
    24013 > view matrix models
    24014 > #101,0.79813,0.58715,-0.13508,-65.085,-0.55179,0.80238,0.22743,57.833,0.24192,-0.10698,0.96438,-13.968
    24015 
    24016 > view matrix models
    24017 > #101,0.79889,0.58571,-0.13682,-64.561,-0.55825,0.80671,0.19382,64.739,0.2239,-0.078459,0.97145,-18.352
    24018 
    24019 > view matrix models
    24020 > #101,0.79781,0.58955,-0.1262,-67.326,-0.55986,0.80211,0.2078,63.367,0.22373,-0.095134,0.97,-14.187
    24021 
    24022 > view matrix models
    24023 > #101,0.80108,0.58505,-0.12645,-66.888,-0.56025,0.80725,0.18565,66.622,0.21069,-0.077875,0.97445,-16.449
    24024 
    24025 > select add #104
    24026 
    24027 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24028 
    24029 > select subtract #104
    24030 
    24031 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24032 
    24033 > select add #103
    24034 
    24035 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24036 
    24037 > select subtract #103
    24038 
    24039 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24040 
    24041 > select subtract #101
    24042 
    24043 Nothing selected 
    24044 
    24045 > select add #102
    24046 
    24047 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24048 
    24049 > view matrix models
    24050 > #102,0.77459,0.62084,-0.12067,-70.8,-0.58687,0.77668,0.22882,117.46,0.23578,-0.10643,0.96596,-13.988
    24051 
    24052 > select add #101
    24053 
    24054 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24055 
    24056 > select subtract #102
    24057 
    24058 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24059 
    24060 > select subtract #101
    24061 
    24062 Nothing selected 
    24063 
    24064 > select add #104
    24065 
    24066 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24067 
    24068 > view matrix models
    24069 > #104,0.80941,0.57708,-0.10881,-72.228,-0.55745,0.8133,0.16669,139.35,0.18469,-0.074262,0.97999,-13.677
    24070 
    24071 > ui mousemode right "translate selected models"
    24072 
    24073 > view matrix models
    24074 > #104,0.80941,0.57708,-0.10881,-66.555,-0.55745,0.8133,0.16669,140.32,0.18469,-0.074262,0.97999,-13.179
    24075 
    24076 > view matrix models
    24077 > #104,0.80941,0.57708,-0.10881,-66.852,-0.55745,0.8133,0.16669,140.21,0.18469,-0.074262,0.97999,-12.368
    24078 
    24079 > view matrix models
    24080 > #104,0.80941,0.57708,-0.10881,-66.898,-0.55745,0.8133,0.16669,140.81,0.18469,-0.074262,0.97999,-12.362
    24081 
    24082 > view matrix models
    24083 > #104,0.80941,0.57708,-0.10881,-69.351,-0.55745,0.8133,0.16669,138.87,0.18469,-0.074262,0.97999,-13.03
    24084 
    24085 > ui mousemode right "rotate selected models"
    24086 
    24087 > view matrix models
    24088 > #104,0.82752,0.54892,-0.11792,-64.665,-0.5271,0.8319,0.17351,127.2,0.19334,-0.081424,0.97775,-12.659
    24089 
    24090 > ui mousemode right "translate selected models"
    24091 
    24092 > view matrix models
    24093 > #104,0.82752,0.54892,-0.11792,-63.542,-0.5271,0.8319,0.17351,127.84,0.19334,-0.081424,0.97775,-13.406
    24094 
    24095 > view matrix models
    24096 > #104,0.82752,0.54892,-0.11792,-63.636,-0.5271,0.8319,0.17351,127.53,0.19334,-0.081424,0.97775,-13.491
    24097 
    24098 > view matrix models
    24099 > #104,0.82752,0.54892,-0.11792,-64.014,-0.5271,0.8319,0.17351,127.63,0.19334,-0.081424,0.97775,-12.257
    24100 
    24101 > select add #103
    24102 
    24103 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24104 
    24105 > select subtract #103
    24106 
    24107 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24108 
    24109 > select add #102
    24110 
    24111 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24112 
    24113 > select subtract #102
    24114 
    24115 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24116 
    24117 > select add #101
    24118 
    24119 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24120 
    24121 > select clear
    24122 
    24123 > select add #104
    24124 
    24125 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24126 
    24127 > select subtract #104
    24128 
    24129 Nothing selected 
    24130 
    24131 > select add #103
    24132 
    24133 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24134 
    24135 > select subtract #103
    24136 
    24137 Nothing selected 
    24138 
    24139 > select add #102
    24140 
    24141 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24142 
    24143 > select subtract #102
    24144 
    24145 Nothing selected 
    24146 
    24147 > select add #101
    24148 
    24149 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24150 
    24151 > view matrix models
    24152 > #101,0.80108,0.58505,-0.12645,-68.963,-0.56025,0.80725,0.18565,66.79,0.21069,-0.077875,0.97445,-16.693
    24153 
    24154 > ui mousemode right "rotate selected models"
    24155 
    24156 > view matrix models
    24157 > #101,0.79641,0.58105,-0.16767,-58.992,-0.55253,0.81182,0.18884,63.574,0.24584,-0.05775,0.96759,-26.976
    24158 
    24159 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    24160 > MRCLaboratoryofMolecularBiology/Documents/Carter
    24161 > Lab/Diorge/Membranes/Fit14-21.cxs"
    24162 
    24163 > select add #102
    24164 
    24165 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24166 
    24167 > select subtract #102
    24168 
    24169 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24170 
    24171 > select subtract #101
    24172 
    24173 Nothing selected 
    24174 
    24175 > select add #15
    24176 
    24177 105 atoms, 104 bonds, 15 residues, 1 model selected 
    24178 
    24179 > select subtract #15
    24180 
    24181 Nothing selected 
    24182 
    24183 > select add #14
    24184 
    24185 133 atoms, 132 bonds, 1 pseudobond, 17 residues, 2 models selected 
    24186 
    24187 > select add #13
    24188 
    24189 185 atoms, 183 bonds, 2 pseudobonds, 25 residues, 4 models selected 
    24190 
    24191 > select subtract #13
    24192 
    24193 133 atoms, 132 bonds, 1 pseudobond, 17 residues, 2 models selected 
    24194 
    24195 > select add #16
    24196 
    24197 245 atoms, 243 bonds, 1 pseudobond, 32 residues, 3 models selected 
    24198 
    24199 > select subtract #16
    24200 
    24201 133 atoms, 132 bonds, 1 pseudobond, 17 residues, 2 models selected 
    24202 
    24203 > select add #17
    24204 
    24205 260 atoms, 261 bonds, 1 pseudobond, 32 residues, 3 models selected 
    24206 
    24207 > select subtract #17
    24208 
    24209 133 atoms, 132 bonds, 1 pseudobond, 17 residues, 2 models selected 
    24210 
    24211 > select add #57
    24212 
    24213 233 atoms, 230 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    24214 
    24215 > view matrix models
    24216 > #14,0.79956,0.30896,0.51503,-124.43,-0.25338,0.95101,-0.17715,66.136,-0.54453,0.011146,0.83867,134.79,#57,0.93776,0.34132,0.064026,-72.158,-0.3449,0.9369,0.057137,41.174,-0.040484,-0.075664,0.99631,25.088
    24217 
    24218 > show #!9 models
    24219 
    24220 > hide #!9 models
    24221 
    24222 > show #!9 models
    24223 
    24224 > hide #!9 models
    24225 
    24226 > ui mousemode right "translate selected models"
    24227 
    24228 > view matrix models
    24229 > #14,0.79956,0.30896,0.51503,-124.25,-0.25338,0.95101,-0.17715,67.101,-0.54453,0.011146,0.83867,134.9,#57,0.93776,0.34132,0.064026,-71.98,-0.3449,0.9369,0.057137,42.139,-0.040484,-0.075664,0.99631,25.194
    24230 
    24231 > combine #13-18,57
    24232 
    24233 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24234 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24235 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24236 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24237 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24238 to 'q' 
    24239 
    24240 > mmaker #106/9 to #101/9 pairing ss
    24241 
    24242 Parameters 
    24243 --- 
    24244 Chain pairing | ss 
    24245 Alignment algorithm | Needleman-Wunsch 
    24246 Similarity matrix | BLOSUM-62 
    24247 SS fraction | 0.3 
    24248 Gap open (HH/SS/other) | 18/18/6 
    24249 Gap extend | 1 
    24250 SS matrix |  |  | H | S | O 
    24251 ---|---|---|--- 
    24252 H | 6 | -9 | -6 
    24253 S |  | 6 | -6 
    24254 O |  |  | 4 
    24255 Iteration cutoff | 2 
    24256  
    24257 Matchmaker combination, chain 9 (#101) with combination, chain 9 (#106),
    24258 sequence alignment score = 674.3 
    24259 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24260 0.000) 
    24261  
    24262 
    24263 > combine #13-18,57
    24264 
    24265 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24266 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24267 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24268 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24269 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24270 to 'q' 
    24271 
    24272 > mmaker #107/9 to #102/9 pairing ss
    24273 
    24274 Parameters 
    24275 --- 
    24276 Chain pairing | ss 
    24277 Alignment algorithm | Needleman-Wunsch 
    24278 Similarity matrix | BLOSUM-62 
    24279 SS fraction | 0.3 
    24280 Gap open (HH/SS/other) | 18/18/6 
    24281 Gap extend | 1 
    24282 SS matrix |  |  | H | S | O 
    24283 ---|---|---|--- 
    24284 H | 6 | -9 | -6 
    24285 S |  | 6 | -6 
    24286 O |  |  | 4 
    24287 Iteration cutoff | 2 
    24288  
    24289 Matchmaker combination, chain 9 (#102) with combination, chain 9 (#107),
    24290 sequence alignment score = 674.3 
    24291 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24292 0.000) 
    24293  
    24294 
    24295 > combine #13-18,57
    24296 
    24297 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24298 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24299 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24300 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24301 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24302 to 'q' 
    24303 
    24304 > mmaker #108/9 to #103/9 pairing ss
    24305 
    24306 Parameters 
    24307 --- 
    24308 Chain pairing | ss 
    24309 Alignment algorithm | Needleman-Wunsch 
    24310 Similarity matrix | BLOSUM-62 
    24311 SS fraction | 0.3 
    24312 Gap open (HH/SS/other) | 18/18/6 
    24313 Gap extend | 1 
    24314 SS matrix |  |  | H | S | O 
    24315 ---|---|---|--- 
    24316 H | 6 | -9 | -6 
    24317 S |  | 6 | -6 
    24318 O |  |  | 4 
    24319 Iteration cutoff | 2 
    24320  
    24321 Matchmaker combination, chain 9 (#103) with combination, chain 9 (#108),
    24322 sequence alignment score = 674.3 
    24323 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24324 0.000) 
    24325  
    24326 
    24327 > combine #13-18,57
    24328 
    24329 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24330 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24331 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24332 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24333 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24334 to 'q' 
    24335 
    24336 > mmaker #109/9 to #104/9 pairing ss
    24337 
    24338 Parameters 
    24339 --- 
    24340 Chain pairing | ss 
    24341 Alignment algorithm | Needleman-Wunsch 
    24342 Similarity matrix | BLOSUM-62 
    24343 SS fraction | 0.3 
    24344 Gap open (HH/SS/other) | 18/18/6 
    24345 Gap extend | 1 
    24346 SS matrix |  |  | H | S | O 
    24347 ---|---|---|--- 
    24348 H | 6 | -9 | -6 
    24349 S |  | 6 | -6 
    24350 O |  |  | 4 
    24351 Iteration cutoff | 2 
    24352  
    24353 Matchmaker combination, chain 9 (#104) with combination, chain 9 (#109),
    24354 sequence alignment score = 674.3 
    24355 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24356 0.000) 
    24357  
    24358 
    24359 > hide #!101 models
    24360 
    24361 > hide #!102 models
    24362 
    24363 > hide #!103 models
    24364 
    24365 > hide #!104 models
    24366 
    24367 > show #!105 models
    24368 
    24369 > hide #!105 models
    24370 
    24371 > select add #13
    24372 
    24373 285 atoms, 281 bonds, 3 pseudobonds, 38 residues, 6 models selected 
    24374 
    24375 > select subtract #14
    24376 
    24377 152 atoms, 149 bonds, 2 pseudobonds, 21 residues, 4 models selected 
    24378 
    24379 > ui mousemode right "rotate selected models"
    24380 
    24381 > view matrix models
    24382 > #13,0.84215,0.52663,-0.11598,-63.175,-0.49455,0.84001,0.22318,61.935,0.21496,-0.13059,0.96785,-3.5877,#57,0.9597,0.27324,0.065706,-60.912,-0.27798,0.95733,0.079099,19.795,-0.041289,-0.094176,0.9947,29.955
    24383 
    24384 > undo
    24385 
    24386 > select subtract #57
    24387 
    24388 52 atoms, 51 bonds, 1 pseudobond, 8 residues, 2 models selected 
    24389 
    24390 > view matrix models
    24391 > #13,0.8667,0.48347,-0.12282,-55.855,-0.44926,0.86355,0.22901,45.766,0.21678,-0.1433,0.96564,-0.31062
    24392 
    24393 > ui mousemode right "translate selected models"
    24394 
    24395 > view matrix models
    24396 > #13,0.8667,0.48347,-0.12282,-56.695,-0.44926,0.86355,0.22901,45.912,0.21678,-0.1433,0.96564,-0.52942
    24397 
    24398 > view matrix models
    24399 > #13,0.8667,0.48347,-0.12282,-57.062,-0.44926,0.86355,0.22901,45.54,0.21678,-0.1433,0.96564,-0.58476
    24400 
    24401 > select add #14
    24402 
    24403 185 atoms, 183 bonds, 2 pseudobonds, 25 residues, 4 models selected 
    24404 
    24405 > select subtract #13
    24406 
    24407 133 atoms, 132 bonds, 1 pseudobond, 17 residues, 2 models selected 
    24408 
    24409 > select add #57
    24410 
    24411 233 atoms, 230 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    24412 
    24413 > ui mousemode right "rotate selected models"
    24414 
    24415 > view matrix models
    24416 > #14,0.80721,0.27703,0.52122,-120.09,-0.23052,0.96085,-0.1537,56.073,-0.54339,0.0039159,0.83947,136.07,#57,0.94873,0.30979,0.062749,-67.086,-0.31368,0.94719,0.066546,32.067,-0.038821,-0.082818,0.99581,26.505
    24417 
    24418 > close #106-109
    24419 
    24420 > combine #13-18,57
    24421 
    24422 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24423 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24424 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24425 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24426 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24427 to 'q' 
    24428 
    24429 > mmaker #106/9 to #101/9 pairing ss
    24430 
    24431 Parameters 
    24432 --- 
    24433 Chain pairing | ss 
    24434 Alignment algorithm | Needleman-Wunsch 
    24435 Similarity matrix | BLOSUM-62 
    24436 SS fraction | 0.3 
    24437 Gap open (HH/SS/other) | 18/18/6 
    24438 Gap extend | 1 
    24439 SS matrix |  |  | H | S | O 
    24440 ---|---|---|--- 
    24441 H | 6 | -9 | -6 
    24442 S |  | 6 | -6 
    24443 O |  |  | 4 
    24444 Iteration cutoff | 2 
    24445  
    24446 Matchmaker combination, chain 9 (#101) with combination, chain 9 (#106),
    24447 sequence alignment score = 674.3 
    24448 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24449 0.000) 
    24450  
    24451 
    24452 > combine #13-18,57
    24453 
    24454 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24455 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24456 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24457 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24458 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24459 to 'q' 
    24460 
    24461 > mmaker #107/9 to #102/9 pairing ss
    24462 
    24463 Parameters 
    24464 --- 
    24465 Chain pairing | ss 
    24466 Alignment algorithm | Needleman-Wunsch 
    24467 Similarity matrix | BLOSUM-62 
    24468 SS fraction | 0.3 
    24469 Gap open (HH/SS/other) | 18/18/6 
    24470 Gap extend | 1 
    24471 SS matrix |  |  | H | S | O 
    24472 ---|---|---|--- 
    24473 H | 6 | -9 | -6 
    24474 S |  | 6 | -6 
    24475 O |  |  | 4 
    24476 Iteration cutoff | 2 
    24477  
    24478 Matchmaker combination, chain 9 (#102) with combination, chain 9 (#107),
    24479 sequence alignment score = 674.3 
    24480 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24481 0.000) 
    24482  
    24483 
    24484 > combine #13-18,57
    24485 
    24486 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24487 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24488 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24489 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24490 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24491 to 'q' 
    24492 
    24493 > mmaker #108/9 to #103/9 pairing ss
    24494 
    24495 Parameters 
    24496 --- 
    24497 Chain pairing | ss 
    24498 Alignment algorithm | Needleman-Wunsch 
    24499 Similarity matrix | BLOSUM-62 
    24500 SS fraction | 0.3 
    24501 Gap open (HH/SS/other) | 18/18/6 
    24502 Gap extend | 1 
    24503 SS matrix |  |  | H | S | O 
    24504 ---|---|---|--- 
    24505 H | 6 | -9 | -6 
    24506 S |  | 6 | -6 
    24507 O |  |  | 4 
    24508 Iteration cutoff | 2 
    24509  
    24510 Matchmaker combination, chain 9 (#103) with combination, chain 9 (#108),
    24511 sequence alignment score = 674.3 
    24512 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24513 0.000) 
    24514  
    24515 
    24516 > combine #13-18,57
    24517 
    24518 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24519 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24520 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24521 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24522 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24523 to 'q' 
    24524 
    24525 > mmaker #109/9 to #104/9 pairing ss
    24526 
    24527 Parameters 
    24528 --- 
    24529 Chain pairing | ss 
    24530 Alignment algorithm | Needleman-Wunsch 
    24531 Similarity matrix | BLOSUM-62 
    24532 SS fraction | 0.3 
    24533 Gap open (HH/SS/other) | 18/18/6 
    24534 Gap extend | 1 
    24535 SS matrix |  |  | H | S | O 
    24536 ---|---|---|--- 
    24537 H | 6 | -9 | -6 
    24538 S |  | 6 | -6 
    24539 O |  |  | 4 
    24540 Iteration cutoff | 2 
    24541  
    24542 Matchmaker combination, chain 9 (#104) with combination, chain 9 (#109),
    24543 sequence alignment score = 674.3 
    24544 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24545 0.000) 
    24546  
    24547 
    24548 > select add #109
    24549 
    24550 1520 atoms, 1512 bonds, 6 pseudobonds, 197 residues, 6 models selected 
    24551 
    24552 > ui mousemode right "translate selected models"
    24553 
    24554 > view matrix models
    24555 > #14,0.80721,0.27703,0.52122,-117.88,-0.23052,0.96085,-0.1537,54.871,-0.54339,0.0039159,0.83947,136.83,#57,0.94873,0.30979,0.062749,-64.874,-0.31368,0.94719,0.066546,30.865,-0.038821,-0.082818,0.99581,27.264,#109,0.88596,0.44378,-0.13464,-46.096,-0.41694,0.88934,0.18772,87.508,0.20305,-0.11017,0.97295,-5.8636
    24556 
    24557 > view matrix models
    24558 > #14,0.80721,0.27703,0.52122,-117.97,-0.23052,0.96085,-0.1537,54.686,-0.54339,0.0039159,0.83947,136.8,#57,0.94873,0.30979,0.062749,-64.966,-0.31368,0.94719,0.066546,30.68,-0.038821,-0.082818,0.99581,27.236,#109,0.88596,0.44378,-0.13464,-46.188,-0.41694,0.88934,0.18772,87.323,0.20305,-0.11017,0.97295,-5.8919
    24559 
    24560 > select add #108
    24561 
    24562 2807 atoms, 2794 bonds, 10 pseudobonds, 364 residues, 8 models selected 
    24563 
    24564 > select subtract #108
    24565 
    24566 1520 atoms, 1512 bonds, 6 pseudobonds, 197 residues, 6 models selected 
    24567 
    24568 > select subtract #109
    24569 
    24570 233 atoms, 230 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    24571 
    24572 > select add #107
    24573 
    24574 1520 atoms, 1512 bonds, 6 pseudobonds, 197 residues, 6 models selected 
    24575 
    24576 > view matrix models
    24577 > #14,0.80721,0.27703,0.52122,-116.3,-0.23052,0.96085,-0.1537,54.215,-0.54339,0.0039159,0.83947,137.37,#57,0.94873,0.30979,0.062749,-63.296,-0.31368,0.94719,0.066546,30.209,-0.038821,-0.082818,0.99581,27.803,#107,0.84224,0.52167,-0.13599,-56.988,-0.48183,0.84156,0.24417,77.166,0.24182,-0.14013,0.96015,-5.6765
    24578 
    24579 > show #!105 models
    24580 
    24581 > hide #!105 models
    24582 
    24583 > undo
    24584 
    24585 [Repeated 3 time(s)]
    24586 
    24587 > redo
    24588 
    24589 > select subtract #57
    24590 
    24591 1420 atoms, 1414 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    24592 
    24593 > view matrix models
    24594 > #14,0.80721,0.27703,0.52122,-115.75,-0.23052,0.96085,-0.1537,53.735,-0.54339,0.0039159,0.83947,137.86,#107,0.84224,0.52167,-0.13599,-56.434,-0.48183,0.84156,0.24417,76.685,0.24182,-0.14013,0.96015,-5.1843
    24595 
    24596 > undo
    24597 
    24598 > select subtract #14
    24599 
    24600 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24601 
    24602 > view matrix models
    24603 > #107,0.84224,0.52167,-0.13599,-56.82,-0.48183,0.84156,0.24417,76.526,0.24182,-0.14013,0.96015,-5.3076
    24604 
    24605 > select add #13
    24606 
    24607 1339 atoms, 1333 bonds, 5 pseudobonds, 175 residues, 4 models selected 
    24608 
    24609 > select subtract #13
    24610 
    24611 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24612 
    24613 > select add #14
    24614 
    24615 1420 atoms, 1414 bonds, 5 pseudobonds, 184 residues, 4 models selected 
    24616 
    24617 > select subtract #14
    24618 
    24619 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24620 
    24621 > select subtract #107
    24622 
    24623 Nothing selected 
    24624 
    24625 > select add #106
    24626 
    24627 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24628 
    24629 > select subtract #106
    24630 
    24631 Nothing selected 
    24632 
    24633 > select add #109
    24634 
    24635 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24636 
    24637 > select subtract #109
    24638 
    24639 Nothing selected 
    24640 
    24641 > select add #108
    24642 
    24643 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24644 
    24645 > view matrix models
    24646 > #108,0.86654,0.44574,-0.22454,-31.099,-0.40453,0.89076,0.20711,-15.072,0.29233,-0.088636,0.9522,-25.775
    24647 
    24648 > view matrix models
    24649 > #108,0.86654,0.44574,-0.22454,-31.081,-0.40453,0.89076,0.20711,-14.859,0.29233,-0.088636,0.9522,-25.913
    24650 
    24651 > ui mousemode right "rotate selected models"
    24652 
    24653 > view matrix models
    24654 > #108,0.81688,0.54587,-0.18638,-52.082,-0.51282,0.83522,0.19858,21.591,0.26407,-0.066639,0.9622,-27.358
    24655 
    24656 > ui mousemode right "translate selected models"
    24657 
    24658 > view matrix models
    24659 > #108,0.81688,0.54587,-0.18638,-52.798,-0.51282,0.83522,0.19858,21.707,0.26407,-0.066639,0.9622,-27.551
    24660 
    24661 > view matrix models
    24662 > #108,0.81688,0.54587,-0.18638,-53.096,-0.51282,0.83522,0.19858,21.463,0.26407,-0.066639,0.9622,-27.041
    24663 
    24664 > undo
    24665 
    24666 > ui mousemode right "rotate selected models"
    24667 
    24668 > view matrix models
    24669 > #108,0.83075,0.52087,-0.19634,-47.764,-0.50211,0.85346,0.13959,26.895,0.24028,-0.017378,0.97055,-35.96
    24670 
    24671 > view matrix models
    24672 > #108,0.83111,0.52307,-0.18884,-49.828,-0.49655,0.85089,0.17151,20.096,0.2504,-0.048776,0.96691,-29.919
    24673 
    24674 > select add #107
    24675 
    24676 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24677 
    24678 > select subtract #108
    24679 
    24680 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24681 
    24682 > view matrix models
    24683 > #107,0.83915,0.51056,-0.18748,-43.459,-0.47619,0.85622,0.20032,80.592,0.2628,-0.07882,0.96163,-24.18
    24684 
    24685 > ui mousemode right "translate selected models"
    24686 
    24687 > view matrix models
    24688 > #107,0.83915,0.51056,-0.18748,-42.361,-0.47619,0.85622,0.20032,81.311,0.2628,-0.07882,0.96163,-23.888
    24689 
    24690 > view matrix models
    24691 > #107,0.83915,0.51056,-0.18748,-42.181,-0.47619,0.85622,0.20032,81.287,0.2628,-0.07882,0.96163,-24.181
    24692 
    24693 > view matrix models
    24694 > #107,0.83915,0.51056,-0.18748,-42.003,-0.47619,0.85622,0.20032,81.132,0.2628,-0.07882,0.96163,-24.067
    24695 
    24696 > view matrix models
    24697 > #107,0.83915,0.51056,-0.18748,-41.794,-0.47619,0.85622,0.20032,80.41,0.2628,-0.07882,0.96163,-23.95
    24698 
    24699 > ui mousemode right "rotate selected models"
    24700 
    24701 > view matrix models
    24702 > #107,0.84904,0.49331,-0.18917,-39.404,-0.45871,0.86593,0.19937,74.808,0.26216,-0.082498,0.96149,-22.933
    24703 
    24704 > select add #106
    24705 
    24706 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24707 
    24708 > select subtract #107
    24709 
    24710 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24711 
    24712 > ui mousemode right "translate selected models"
    24713 
    24714 > view matrix models
    24715 > #106,0.85797,0.47978,-0.18359,-43.52,-0.44431,0.87244,0.20355,23.434,0.25783,-0.093069,0.9617,-19.928
    24716 
    24717 > view matrix models
    24718 > #106,0.85797,0.47978,-0.18359,-43.756,-0.44431,0.87244,0.20355,22.893,0.25783,-0.093069,0.9617,-19.922
    24719 
    24720 > select add #108
    24721 
    24722 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24723 
    24724 > select subtract #106
    24725 
    24726 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24727 
    24728 > view matrix models
    24729 > #108,0.83111,0.52307,-0.18884,-47.548,-0.49655,0.85089,0.17151,20.143,0.2504,-0.048776,0.96691,-29.109
    24730 
    24731 > ui mousemode right "rotate selected models"
    24732 
    24733 > view matrix models
    24734 > #108,0.84903,0.49125,-0.19447,-42.585,-0.46299,0.8691,0.17408,8.6294,0.25453,-0.057757,0.96534,-27.524
    24735 
    24736 > view matrix models
    24737 > #108,0.85909,0.47203,-0.19786,-39.434,-0.44273,0.87932,0.17549,1.8852,0.25682,-0.063166,0.96439,-26.53
    24738 
    24739 > ui mousemode right "translate selected models"
    24740 
    24741 [Repeated 1 time(s)]
    24742 
    24743 > view matrix models
    24744 > #108,0.85909,0.47203,-0.19786,-39.65,-0.44273,0.87932,0.17549,1.6982,0.25682,-0.063166,0.96439,-26.584
    24745 
    24746 > ui mousemode right "rotate selected models"
    24747 
    24748 > view matrix models
    24749 > #108,0.86341,0.46324,-0.19983,-38.068,-0.43318,0.88375,0.17702,-1.5601,0.2586,-0.066277,0.96371,-26.079
    24750 
    24751 > view matrix models
    24752 > #108,0.86593,0.46167,-0.19243,-39.664,-0.43298,0.88452,0.17366,-1.118,0.25038,-0.067062,0.96582,-24.66
    24753 
    24754 > view matrix models
    24755 > #108,0.87084,0.45775,-0.17919,-42.339,-0.42133,0.88282,0.20763,-9.7492,0.25323,-0.10532,0.96165,-15.448
    24756 
    24757 > select add #107
    24758 
    24759 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24760 
    24761 > select subtract #107
    24762 
    24763 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24764 
    24765 > select subtract #108
    24766 
    24767 Nothing selected 
    24768 
    24769 > select add #106
    24770 
    24771 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24772 
    24773 > view matrix models
    24774 > #106,0.86292,0.47595,-0.16983,-46.562,-0.43254,0.86942,0.23877,14.302,0.2613,-0.13258,0.95611,-10.259
    24775 
    24776 > select subtract #106
    24777 
    24778 Nothing selected 
    24779 
    24780 > select add #109
    24781 
    24782 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24783 
    24784 > select subtract #109
    24785 
    24786 Nothing selected 
    24787 
    24788 > select add #108
    24789 
    24790 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24791 
    24792 > select subtract #108
    24793 
    24794 Nothing selected 
    24795 
    24796 > select add #106
    24797 
    24798 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24799 
    24800 > select subtract #106
    24801 
    24802 Nothing selected 
    24803 
    24804 > select add #108
    24805 
    24806 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24807 
    24808 > select subtract #108
    24809 
    24810 Nothing selected 
    24811 
    24812 > select add #109
    24813 
    24814 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24815 
    24816 > view matrix models
    24817 > #109,0.88526,0.44041,-0.14948,-42.336,-0.41796,0.89432,0.15969,91.875,0.20402,-0.078892,0.97578,-13.975
    24818 
    24819 > select add #107
    24820 
    24821 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    24822 
    24823 > select subtract #109
    24824 
    24825 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    24826 
    24827 > view matrix models
    24828 > #107,0.84919,0.49977,-0.17063,-44.597,-0.45837,0.85799,0.23184,70.208,0.26226,-0.11866,0.95767,-13.727
    24829 
    24830 > view matrix models
    24831 > #107,0.86055,0.49066,-0.13678,-51.41,-0.45796,0.86284,0.21397,72.507,0.22301,-0.1215,0.96722,-7.0555
    24832 
    24833 > select subtract #107
    24834 
    24835 Nothing selected 
    24836 
    24837 > select add #15
    24838 
    24839 105 atoms, 104 bonds, 15 residues, 1 model selected 
    24840 
    24841 > select subtract #15
    24842 
    24843 Nothing selected 
    24844 
    24845 > select add #14
    24846 
    24847 133 atoms, 132 bonds, 1 pseudobond, 17 residues, 2 models selected 
    24848 
    24849 > select add #57
    24850 
    24851 233 atoms, 230 bonds, 2 pseudobonds, 30 residues, 4 models selected 
    24852 
    24853 > ui mousemode right "translate selected models"
    24854 
    24855 > view matrix models
    24856 > #14,0.80721,0.27703,0.52122,-119.56,-0.23052,0.96085,-0.1537,55.899,-0.54339,0.0039159,0.83947,136.56,#57,0.94873,0.30979,0.062749,-66.554,-0.31368,0.94719,0.066546,31.893,-0.038821,-0.082818,0.99581,26.99
    24857 
    24858 > view matrix models
    24859 > #14,0.80721,0.27703,0.52122,-119.59,-0.23052,0.96085,-0.1537,55.493,-0.54339,0.0039159,0.83947,136.55,#57,0.94873,0.30979,0.062749,-66.588,-0.31368,0.94719,0.066546,31.487,-0.038821,-0.082818,0.99581,26.982
    24860 
    24861 > combine #13-18,57
    24862 
    24863 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24864 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24865 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24866 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24867 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24868 to 'q' 
    24869 
    24870 > mmaker #110/9 to #106/9 pairing ss
    24871 
    24872 Parameters 
    24873 --- 
    24874 Chain pairing | ss 
    24875 Alignment algorithm | Needleman-Wunsch 
    24876 Similarity matrix | BLOSUM-62 
    24877 SS fraction | 0.3 
    24878 Gap open (HH/SS/other) | 18/18/6 
    24879 Gap extend | 1 
    24880 SS matrix |  |  | H | S | O 
    24881 ---|---|---|--- 
    24882 H | 6 | -9 | -6 
    24883 S |  | 6 | -6 
    24884 O |  |  | 4 
    24885 Iteration cutoff | 2 
    24886  
    24887 Matchmaker combination, chain 9 (#106) with combination, chain 9 (#110),
    24888 sequence alignment score = 674.3 
    24889 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24890 0.000) 
    24891  
    24892 
    24893 > combine #13-18,57
    24894 
    24895 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24896 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24897 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24898 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24899 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24900 to 'q' 
    24901 
    24902 > mmaker #111/9 to #107/9 pairing ss
    24903 
    24904 Parameters 
    24905 --- 
    24906 Chain pairing | ss 
    24907 Alignment algorithm | Needleman-Wunsch 
    24908 Similarity matrix | BLOSUM-62 
    24909 SS fraction | 0.3 
    24910 Gap open (HH/SS/other) | 18/18/6 
    24911 Gap extend | 1 
    24912 SS matrix |  |  | H | S | O 
    24913 ---|---|---|--- 
    24914 H | 6 | -9 | -6 
    24915 S |  | 6 | -6 
    24916 O |  |  | 4 
    24917 Iteration cutoff | 2 
    24918  
    24919 Matchmaker combination, chain 9 (#107) with combination, chain 9 (#111),
    24920 sequence alignment score = 674.3 
    24921 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24922 0.000) 
    24923  
    24924 
    24925 > combine #13-18,57
    24926 
    24927 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24928 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24929 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24930 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24931 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24932 to 'q' 
    24933 
    24934 > mmaker #112/9 to #108/9 pairing ss
    24935 
    24936 Parameters 
    24937 --- 
    24938 Chain pairing | ss 
    24939 Alignment algorithm | Needleman-Wunsch 
    24940 Similarity matrix | BLOSUM-62 
    24941 SS fraction | 0.3 
    24942 Gap open (HH/SS/other) | 18/18/6 
    24943 Gap extend | 1 
    24944 SS matrix |  |  | H | S | O 
    24945 ---|---|---|--- 
    24946 H | 6 | -9 | -6 
    24947 S |  | 6 | -6 
    24948 O |  |  | 4 
    24949 Iteration cutoff | 2 
    24950  
    24951 Matchmaker combination, chain 9 (#108) with combination, chain 9 (#112),
    24952 sequence alignment score = 674.3 
    24953 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24954 0.000) 
    24955  
    24956 
    24957 > combine #13-18,57
    24958 
    24959 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    24960 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    24961 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    24962 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    24963 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    24964 to 'q' 
    24965 
    24966 > mmaker #113/9 to #109/9 pairing ss
    24967 
    24968 Parameters 
    24969 --- 
    24970 Chain pairing | ss 
    24971 Alignment algorithm | Needleman-Wunsch 
    24972 Similarity matrix | BLOSUM-62 
    24973 SS fraction | 0.3 
    24974 Gap open (HH/SS/other) | 18/18/6 
    24975 Gap extend | 1 
    24976 SS matrix |  |  | H | S | O 
    24977 ---|---|---|--- 
    24978 H | 6 | -9 | -6 
    24979 S |  | 6 | -6 
    24980 O |  |  | 4 
    24981 Iteration cutoff | 2 
    24982  
    24983 Matchmaker combination, chain 9 (#109) with combination, chain 9 (#113),
    24984 sequence alignment score = 674.3 
    24985 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    24986 0.000) 
    24987  
    24988 
    24989 > hide #!106 models
    24990 
    24991 > hide #!107 models
    24992 
    24993 > hide #!108 models
    24994 
    24995 > hide #!109 models
    24996 
    24997 > select clear
    24998 
    24999 > show #!108 models
    25000 
    25001 > hide #!108 models
    25002 
    25003 > show #!107 models
    25004 
    25005 > hide #!107 models
    25006 
    25007 > select add #111
    25008 
    25009 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25010 
    25011 > view matrix models
    25012 > #111,0.86055,0.49066,-0.13678,-52.405,-0.45796,0.86284,0.21397,73.915,0.22301,-0.1215,0.96722,-7.4318
    25013 
    25014 > select subtract #111
    25015 
    25016 Nothing selected 
    25017 
    25018 > select add #110
    25019 
    25020 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25021 
    25022 > select subtract #110
    25023 
    25024 Nothing selected 
    25025 
    25026 > select add #113
    25027 
    25028 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25029 
    25030 > select subtract #113
    25031 
    25032 Nothing selected 
    25033 
    25034 > select add #112
    25035 
    25036 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25037 
    25038 > ui mousemode right "rotate selected models"
    25039 
    25040 > view matrix models
    25041 > #112,0.86652,0.46563,-0.17979,-43.199,-0.42128,0.87545,0.23687,-13.792,0.26769,-0.12951,0.95476,-11.329
    25042 
    25043 > select subtract #112
    25044 
    25045 Nothing selected 
    25046 
    25047 > select add #110
    25048 
    25049 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25050 
    25051 > select subtract #110
    25052 
    25053 Nothing selected 
    25054 
    25055 > select add #112
    25056 
    25057 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25058 
    25059 > ui mousemode right "translate selected models"
    25060 
    25061 > view matrix models
    25062 > #112,0.86652,0.46563,-0.17979,-43.088,-0.42128,0.87545,0.23687,-13.613,0.26769,-0.12951,0.95476,-12.051
    25063 
    25064 > view matrix models
    25065 > #112,0.86652,0.46563,-0.17979,-43.183,-0.42128,0.87545,0.23687,-14.006,0.26769,-0.12951,0.95476,-12.018
    25066 
    25067 > view matrix models
    25068 > #112,0.86652,0.46563,-0.17979,-43.566,-0.42128,0.87545,0.23687,-14.075,0.26769,-0.12951,0.95476,-12.117
    25069 
    25070 > select subtract #112
    25071 
    25072 Nothing selected 
    25073 
    25074 > select add #111
    25075 
    25076 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25077 
    25078 > select subtract #111
    25079 
    25080 Nothing selected 
    25081 
    25082 > select add #110
    25083 
    25084 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25085 
    25086 > select subtract #110
    25087 
    25088 Nothing selected 
    25089 
    25090 > select add #113
    25091 
    25092 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25093 
    25094 > select add #112
    25095 
    25096 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    25097 
    25098 > select subtract #113
    25099 
    25100 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25101 
    25102 > view matrix models
    25103 > #112,0.86652,0.46563,-0.17979,-44.078,-0.42128,0.87545,0.23687,-13.984,0.26769,-0.12951,0.95476,-11.465
    25104 
    25105 > undo
    25106 
    25107 > view matrix models
    25108 > #112,0.86652,0.46563,-0.17979,-44.205,-0.42128,0.87545,0.23687,-13.991,0.26769,-0.12951,0.95476,-10.8
    25109 
    25110 > ui mousemode right "rotate selected models"
    25111 
    25112 > view matrix models
    25113 > #112,0.846,0.50392,-0.17419,-50.151,-0.46303,0.85636,0.22858,0.49811,0.26436,-0.11272,0.95781,-14.663
    25114 
    25115 > select subtract #112
    25116 
    25117 Nothing selected 
    25118 
    25119 > select add #113
    25120 
    25121 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25122 
    25123 > select subtract #113
    25124 
    25125 Nothing selected 
    25126 
    25127 > select add #111
    25128 
    25129 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25130 
    25131 > select subtract #111
    25132 
    25133 Nothing selected 
    25134 
    25135 > select add #110
    25136 
    25137 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25138 
    25139 > view matrix models
    25140 > #110,0.82976,0.53596,-0.15571,-56.736,-0.49626,0.83616,0.23357,35.916,0.25538,-0.11653,0.95979,-13.554
    25141 
    25142 > ui mousemode right "translate selected models"
    25143 
    25144 > view matrix models
    25145 > #110,0.82976,0.53596,-0.15571,-55.748,-0.49626,0.83616,0.23357,36.143,0.25538,-0.11653,0.95979,-13.501
    25146 
    25147 > select add #111
    25148 
    25149 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    25150 
    25151 > select subtract #111
    25152 
    25153 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25154 
    25155 > select subtract #110
    25156 
    25157 Nothing selected 
    25158 
    25159 > select add #113
    25160 
    25161 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25162 
    25163 > ui mousemode right "rotate selected models"
    25164 
    25165 > view matrix models
    25166 > #113,0.89541,0.41859,-0.15173,-38.821,-0.3942,0.90374,0.16694,83.471,0.207,-0.089664,0.97422,-11.745
    25167 
    25168 > select add #112
    25169 
    25170 2574 atoms, 2564 bonds, 8 pseudobonds, 334 residues, 4 models selected 
    25171 
    25172 > select subtract #112
    25173 
    25174 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25175 
    25176 > select subtract #113
    25177 
    25178 Nothing selected 
    25179 
    25180 > select add #111
    25181 
    25182 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25183 
    25184 > select subtract #111
    25185 
    25186 Nothing selected 
    25187 
    25188 > select add #110
    25189 
    25190 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25191 
    25192 > ui mousemode right "rotate selected models"
    25193 
    25194 > view matrix models
    25195 > #110,0.83713,0.52182,-0.16404,-52.277,-0.49079,0.84896,0.19595,39.459,0.24151,-0.083527,0.9668,-19.825
    25196 
    25197 > select clear
    25198 
    25199 > select add #112
    25200 
    25201 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25202 
    25203 > select subtract #112
    25204 
    25205 Nothing selected 
    25206 
    25207 > select add #111
    25208 
    25209 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25210 
    25211 > select subtract #111
    25212 
    25213 Nothing selected 
    25214 
    25215 > select add #110
    25216 
    25217 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25218 
    25219 > ui mousemode right "rotate selected models"
    25220 
    25221 > view matrix models
    25222 > #110,0.84334,0.51056,-0.16762,-50.183,-0.47891,0.85558,0.19654,35.403,0.24376,-0.085479,0.96606,-19.674
    25223 
    25224 > ui mousemode right "translate selected models"
    25225 
    25226 > view matrix models
    25227 > #110,0.84334,0.51056,-0.16762,-50.432,-0.47891,0.85558,0.19654,35.796,0.24376,-0.085479,0.96606,-18.865
    25228 
    25229 > view matrix models
    25230 > #110,0.84334,0.51056,-0.16762,-50.362,-0.47891,0.85558,0.19654,35.792,0.24376,-0.085479,0.96606,-19.092
    25231 
    25232 > select clear
    25233 
    25234 > volume #8 level 0.01003
    25235 
    25236 > select add #111
    25237 
    25238 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25239 
    25240 > select subtract #111
    25241 
    25242 Nothing selected 
    25243 
    25244 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    25245 > MRCLaboratoryofMolecularBiology/Documents/Carter
    25246 > Lab/Diorge/Membranes/Fit14-21.cxs"
    25247 
    25248 > select add #111
    25249 
    25250 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25251 
    25252 > select subtract #111
    25253 
    25254 Nothing selected 
    25255 
    25256 > select add #112
    25257 
    25258 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25259 
    25260 > select subtract #112
    25261 
    25262 Nothing selected 
    25263 
    25264 > select add #113
    25265 
    25266 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25267 
    25268 > select subtract #113
    25269 
    25270 Nothing selected 
    25271 
    25272 > select add #110
    25273 
    25274 1287 atoms, 1282 bonds, 4 pseudobonds, 167 residues, 2 models selected 
    25275 
    25276 > ui mousemode right zoom
    25277 
    25278 > ui mousemode right "translate selected models"
    25279 
    25280 > view matrix models
    25281 > #110,0.84334,0.51056,-0.16762,-48.547,-0.47891,0.85558,0.19654,34.871,0.24376,-0.085479,0.96606,-18.51
    25282 
    25283 > ui mousemode right "rotate selected models"
    25284 
    25285 > view matrix models
    25286 > #110,0.87331,0.455,-0.17408,-40.284,-0.42052,0.88447,0.20216,15.269,0.24595,-0.10335,0.96376,-14.312
    25287 
    25288 > ui mousemode right "translate selected models"
    25289 
    25290 > view matrix models
    25291 > #110,0.87331,0.455,-0.17408,-38.873,-0.42052,0.88447,0.20216,13.62,0.24595,-0.10335,0.96376,-13.766
    25292 
    25293 > ui mousemode right "rotate selected models"
    25294 
    25295 > ui mousemode right "translate selected models"
    25296 
    25297 > view matrix models
    25298 > #110,0.87331,0.455,-0.17408,-38.593,-0.42052,0.88447,0.20216,13.07,0.24595,-0.10335,0.96376,-13.761
    25299 
    25300 > ui mousemode right "rotate selected models"
    25301 
    25302 > view matrix models
    25303 > #110,0.89092,0.43763,-0.12144,-48.43,-0.41835,0.89486,0.15562,19.371,0.17678,-0.087843,0.98032,-6.7596
    25304 
    25305 > undo
    25306 
    25307 > view matrix models
    25308 > #110,0.87782,0.45041,-0.16298,-40.61,-0.42043,0.88755,0.1884,15.043,0.22951,-0.096856,0.96847,-12.909
    25309 
    25310 > undo
    25311 
    25312 > view matrix models
    25313 > #110,0.88264,0.43388,-0.18082,-34.192,-0.39841,0.89468,0.20204,6.2617,0.24944,-0.10629,0.96254,-13.533
    25314 
    25315 > ui mousemode right "translate selected models"
    25316 
    25317 > view matrix models
    25318 > #110,0.88264,0.43388,-0.18082,-32.193,-0.39841,0.89468,0.20204,6.9244,0.24944,-0.10629,0.96254,-13.369
    25319 
    25320 > view matrix models
    25321 > #110,0.88264,0.43388,-0.18082,-32.072,-0.39841,0.89468,0.20204,7.59,0.24944,-0.10629,0.96254,-13.138
    25322 
    25323 > view matrix models
    25324 > #110,0.88264,0.43388,-0.18082,-32.187,-0.39841,0.89468,0.20204,6.9856,0.24944,-0.10629,0.96254,-13.349
    25325 
    25326 > view matrix models
    25327 > #110,0.88264,0.43388,-0.18082,-33.11,-0.39841,0.89468,0.20204,5.9684,0.24944,-0.10629,0.96254,-13.479
    25328 
    25329 > view matrix models
    25330 > #110,0.88264,0.43388,-0.18082,-33.569,-0.39841,0.89468,0.20204,5.885,0.24944,-0.10629,0.96254,-13.153
    25331 
    25332 > view matrix models
    25333 > #110,0.88264,0.43388,-0.18082,-33.911,-0.39841,0.89468,0.20204,5.9067,0.24944,-0.10629,0.96254,-12.912
    25334 
    25335 > view matrix models
    25336 > #110,0.88264,0.43388,-0.18082,-33.807,-0.39841,0.89468,0.20204,5.8651,0.24944,-0.10629,0.96254,-13.196
    25337 
    25338 > undo
    25339 
    25340 [Repeated 9 time(s)]
    25341 
    25342 > select clear
    25343 
    25344 > combine #13-18,57
    25345 
    25346 Remapping chain ID 'o' in copy of copy of copy of pointy-1pf.pdb #14 to 'p' 
    25347 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    25348 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    25349 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    25350 Remapping chain ID 'o' in copy of copy of copy of copy of pointy-1pf.pdb #57
    25351 to 'q' 
    25352 
    25353 > hide #!1-109 target m
    25354 
    25355 > select #111/p:116
    25356 
    25357 7 atoms, 6 bonds, 1 residue, 1 model selected 
    25358 
    25359 > select add #114/p:116
    25360 
    25361 14 atoms, 12 bonds, 2 residues, 2 models selected 
    25362 
    25363 > select add #110/p:116
    25364 
    25365 21 atoms, 18 bonds, 3 residues, 3 models selected 
    25366 
    25367 > select add #112/p:116
    25368 
    25369 28 atoms, 24 bonds, 4 residues, 4 models selected 
    25370 
    25371 > select add #113/p:116
    25372 
    25373 35 atoms, 30 bonds, 5 residues, 5 models selected 
    25374 
    25375 > delete atoms sel
    25376 
    25377 > delete bonds sel
    25378 
    25379 > hide #!113 models
    25380 
    25381 > show #!113 models
    25382 
    25383 > show #!8 models
    25384 
    25385 > hide #!8 models
    25386 
    25387 > show #!8 models
    25388 
    25389 > show #!9 models
    25390 
    25391 > select add #9
    25392 
    25393 15238 atoms, 15247 bonds, 7 pseudobonds, 978 residues, 2 models selected 
    25394 
    25395 > hide #!8 models
    25396 
    25397 > show #!105 models
    25398 
    25399 > hide #!9 models
    25400 
    25401 > hide #!108-114 target m
    25402 
    25403 > select #105/a/b
    25404 
    25405 Nothing selected 
    25406 
    25407 > select #105/a/b/c/d/e/f/g/h/i/j/k
    25408 
    25409 2144 atoms, 2153 bonds, 2 pseudobonds, 274 residues, 2 models selected 
    25410 
    25411 > select clear
    25412 
    25413 > combine #105/6
    25414 
    25415 > hide #!105 models
    25416 
    25417 > show #!105 models
    25418 
    25419 > hide #!105 models
    25420 
    25421 > close #115
    25422 
    25423 > select #105
    25424 
    25425 7579 atoms, 7588 bonds, 7 pseudobonds, 978 residues, 2 models selected 
    25426 
    25427 > show #!105 models
    25428 
    25429 > select subtract #105/6
    25430 
    25431 6311 atoms, 6315 bonds, 6 pseudobonds, 815 residues, 2 models selected 
    25432 
    25433 > delete atoms (#!105 & sel)
    25434 
    25435 > delete bonds (#!105 & sel)
    25436 
    25437 > combine #105
    25438 
    25439 > hide #!105 models
    25440 
    25441 > show #!114 models
    25442 
    25443 > select add #115
    25444 
    25445 1268 atoms, 1273 bonds, 1 pseudobond, 163 residues, 2 models selected 
    25446 
    25447 > view matrix models
    25448 > #115,0.97661,-0.18597,-0.10797,27.642,0.18399,0.98253,-0.028113,-38.06,0.11131,0.0075906,0.99376,-33.707
    25449 
    25450 Drag select of 17 residues 
    25451 
    25452 > select subtract #115/6:153
    25453 
    25454 122 atoms, 16 residues, 1 model selected 
    25455 
    25456 > delete atoms sel
    25457 
    25458 > delete bonds sel
    25459 
    25460 Drag select of 91 residues, 1 pseudobonds 
    25461 
    25462 > delete atoms (#!115 & sel)
    25463 
    25464 > delete bonds (#!115 & sel)
    25465 
    25466 Drag select of 19 residues, 1 pseudobonds 
    25467 
    25468 > delete atoms (#!115 & sel)
    25469 
    25470 > delete bonds (#!115 & sel)
    25471 
    25472 > select #115/6:118:1000
    25473 
    25474 7 atoms, 7 bonds, 1 residue, 1 model selected 
    25475 
    25476 > select #115/6:0-116
    25477 
    25478 7 atoms, 6 bonds, 1 residue, 1 model selected 
    25479 
    25480 > delete atoms sel
    25481 
    25482 > delete bonds sel
    25483 
    25484 > select add #115
    25485 
    25486 282 atoms, 283 bonds, 36 residues, 1 model selected 
    25487 
    25488 > view matrix models
    25489 > #115,0.97661,-0.18597,-0.10797,79.219,0.18399,0.98253,-0.028113,-79.195,0.11131,0.0075906,0.99376,-26.364
    25490 
    25491 > ui mousemode right "rotate selected models"
    25492 
    25493 > view matrix models
    25494 > #115,0.94197,0.32294,-0.09163,-46.591,-0.33065,0.93971,-0.087249,43.676,0.057929,0.11248,0.99196,-42.263
    25495 
    25496 > ui mousemode right "translate selected models"
    25497 
    25498 > view matrix models
    25499 > #115,0.94197,0.32294,-0.09163,-44.386,-0.33065,0.93971,-0.087249,35.279,0.057929,0.11248,0.99196,-42.542
    25500 
    25501 > view matrix models
    25502 > #115,0.94197,0.32294,-0.09163,-45.549,-0.33065,0.93971,-0.087249,34.686,0.057929,0.11248,0.99196,-41.025
    25503 
    25504 > ui mousemode right "rotate selected models"
    25505 
    25506 > view matrix models
    25507 > #115,0.92743,0.37397,-0.0039783,-72.363,-0.37375,0.92717,0.025952,24.774,0.013394,-0.022582,0.99966,0.5923
    25508 
    25509 > ui mousemode right "translate selected models"
    25510 
    25511 > view matrix models
    25512 > #115,0.92743,0.37397,-0.0039783,-70.621,-0.37375,0.92717,0.025952,25.528,0.013394,-0.022582,0.99966,5.0242
    25513 
    25514 > ui mousemode right "rotate selected models"
    25515 
    25516 > view matrix models
    25517 > #115,0.93919,0.34328,-0.009152,-64.129,-0.34305,0.9391,0.019931,17.629,0.015436,-0.015579,0.99976,2.8228
    25518 
    25519 > ui mousemode right "translate selected models"
    25520 
    25521 > view matrix models
    25522 > #115,0.93919,0.34328,-0.009152,-65.63,-0.34305,0.9391,0.019931,17.456,0.015436,-0.015579,0.99976,3.0638
    25523 
    25524 > view matrix models
    25525 > #115,0.93919,0.34328,-0.009152,-65.42,-0.34305,0.9391,0.019931,17.489,0.015436,-0.015579,0.99976,2.6834
    25526 
    25527 > ui mousemode right "rotate selected models"
    25528 
    25529 > view matrix models
    25530 > #115,0.93934,0.34294,-0.0055012,-66.058,-0.34295,0.93935,-0.002008,21.581,0.0044789,0.0037728,0.99998,-0.13814
    25531 
    25532 > ui mousemode right "translate selected models"
    25533 
    25534 > view matrix models
    25535 > #115,0.93934,0.34294,-0.0055012,-66.082,-0.34295,0.93935,-0.002008,21.53,0.0044789,0.0037728,0.99998,0.18347
    25536 
    25537 > show #!8 models
    25538 
    25539 > view matrix models
    25540 > #115,0.93934,0.34294,-0.0055012,-65.566,-0.34295,0.93935,-0.002008,21.372,0.0044789,0.0037728,0.99998,0.064749
    25541 
    25542 > ui mousemode right "rotate selected models"
    25543 
    25544 > select add #8
    25545 
    25546 282 atoms, 283 bonds, 36 residues, 5 models selected 
    25547 
    25548 > select subtract #8
    25549 
    25550 282 atoms, 283 bonds, 36 residues, 1 model selected 
    25551 
    25552 > volume #8 level 0.007112
    25553 
    25554 > view matrix models
    25555 > #115,0.91944,0.27473,-0.28134,8.1648,-0.26756,0.96139,0.064378,-11.621,0.28816,0.016083,0.95745,-50.497
    25556 
    25557 > view matrix models
    25558 > #115,0.90016,0.34281,-0.26868,-7.792,-0.33763,0.93891,0.066797,7.3528,0.27517,0.030588,0.96091,-52.303
    25559 
    25560 > view matrix models
    25561 > #115,0.88955,0.41673,-0.1872,-40.023,-0.39509,0.90749,0.14274,12.144,0.22937,-0.05301,0.9719,-24.159
    25562 
    25563 > view matrix models
    25564 > #115,0.90268,0.37921,-0.2034,-29.966,-0.36658,0.92521,0.098015,10.565,0.22535,-0.013913,0.97418,-33.756
    25565 
    25566 > ui mousemode right "rotate selected models"
    25567 
    25568 > ui mousemode right "translate selected models"
    25569 
    25570 > view matrix models
    25571 > #115,0.90268,0.37921,-0.2034,-30.307,-0.36658,0.92521,0.098015,10.519,0.22535,-0.013913,0.97418,-33.395
    25572 
    25573 > ui mousemode right "translate selected models"
    25574 
    25575 > view matrix models
    25576 > #115,0.90268,0.37921,-0.2034,-30.29,-0.36658,0.92521,0.098015,10.446,0.22535,-0.013913,0.97418,-32.968
    25577 
    25578 > show #!113 models
    25579 
    25580 > hide #!113 models
    25581 
    25582 > show #!105 models
    25583 
    25584 > mmaker #105/6 to #115/6
    25585 
    25586 Parameters 
    25587 --- 
    25588 Chain pairing | bb 
    25589 Alignment algorithm | Needleman-Wunsch 
    25590 Similarity matrix | BLOSUM-62 
    25591 SS fraction | 0.3 
    25592 Gap open (HH/SS/other) | 18/18/6 
    25593 Gap extend | 1 
    25594 SS matrix |  |  | H | S | O 
    25595 ---|---|---|--- 
    25596 H | 6 | -9 | -6 
    25597 S |  | 6 | -6 
    25598 O |  |  | 4 
    25599 Iteration cutoff | 2 
    25600  
    25601 Matchmaker copy of copy of pointy-1pf.pdb, chain 6 (#115) with copy of
    25602 pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 619.1 
    25603 RMSD between 36 pruned atom pairs is 0.000 angstroms; (across all 36 pairs:
    25604 0.000) 
    25605  
    25606 
    25607 > show #!113 models
    25608 
    25609 > hide #!113 models
    25610 
    25611 > show #!112 models
    25612 
    25613 > hide #!112 models
    25614 
    25615 > show #!111 models
    25616 
    25617 > hide #!111 models
    25618 
    25619 > show #!109 models
    25620 
    25621 > hide #!109 models
    25622 
    25623 > show #!108 models
    25624 
    25625 > ui mousemode right "rotate selected models"
    25626 
    25627 > view matrix models
    25628 > #115,0.90312,0.42824,0.031223,-87.493,-0.42626,0.90294,-0.054836,56.874,-0.051676,0.036215,0.99801,3.9645
    25629 
    25630 > view matrix models
    25631 > #115,0.90752,0.41214,0.080879,-93.705,-0.40805,0.91081,-0.062662,52.797,-0.099491,0.023865,0.99475,17.084
    25632 
    25633 > view matrix models
    25634 > #115,0.93405,0.35052,0.068502,-80.863,-0.34877,0.9365,-0.036415,29.663,-0.076916,0.010122,0.99699,15.738
    25635 
    25636 > mmaker #105/6 to #115/6
    25637 
    25638 Parameters 
    25639 --- 
    25640 Chain pairing | bb 
    25641 Alignment algorithm | Needleman-Wunsch 
    25642 Similarity matrix | BLOSUM-62 
    25643 SS fraction | 0.3 
    25644 Gap open (HH/SS/other) | 18/18/6 
    25645 Gap extend | 1 
    25646 SS matrix |  |  | H | S | O 
    25647 ---|---|---|--- 
    25648 H | 6 | -9 | -6 
    25649 S |  | 6 | -6 
    25650 O |  |  | 4 
    25651 Iteration cutoff | 2 
    25652  
    25653 Matchmaker copy of copy of pointy-1pf.pdb, chain 6 (#115) with copy of
    25654 pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 619.1 
    25655 RMSD between 36 pruned atom pairs is 0.000 angstroms; (across all 36 pairs:
    25656 0.000) 
    25657  
    25658 
    25659 > view matrix models
    25660 > #115,0.92179,0.37358,0.10364,-91.017,-0.37089,0.92759,-0.044837,37.862,-0.11288,0.0028914,0.9936,25.26
    25661 
    25662 > view matrix models
    25663 > #115,0.943,0.31836,0.096986,-79.851,-0.31231,0.9472,-0.072582,26.686,-0.11497,0.038154,0.99264,16.881
    25664 
    25665 > view matrix models
    25666 > #115,0.88998,0.39069,0.23516,-114.17,-0.37066,0.92018,-0.12601,55.146,-0.26562,0.024984,0.96375,55.212
    25667 
    25668 > view matrix models
    25669 > #115,0.89213,0.37419,0.25313,-113.81,-0.36148,0.92734,-0.096843,45.98,-0.27098,-0.0051043,0.96257,64.141
    25670 
    25671 > ui mousemode right "translate selected models"
    25672 
    25673 > view matrix models
    25674 > #115,0.89213,0.37419,0.25313,-113.55,-0.36148,0.92734,-0.096843,45.965,-0.27098,-0.0051043,0.96257,62.919
    25675 
    25676 > view matrix models
    25677 > #115,0.89213,0.37419,0.25313,-113.51,-0.36148,0.92734,-0.096843,47.055,-0.27098,-0.0051043,0.96257,62.231
    25678 
    25679 > ui mousemode right "rotate selected models"
    25680 
    25681 > view matrix models
    25682 > #115,0.92007,0.31804,0.22875,-100.05,-0.30712,0.94806,-0.082838,28.48,-0.24322,0.0059621,0.96995,52.577
    25683 
    25684 > ui mousemode right "translate selected models"
    25685 
    25686 > view matrix models
    25687 > #115,0.92007,0.31804,0.22875,-100.48,-0.30712,0.94806,-0.082838,28.367,-0.24322,0.0059621,0.96995,52.522
    25688 
    25689 > mmaker #105/6 to #115/6
    25690 
    25691 Parameters 
    25692 --- 
    25693 Chain pairing | bb 
    25694 Alignment algorithm | Needleman-Wunsch 
    25695 Similarity matrix | BLOSUM-62 
    25696 SS fraction | 0.3 
    25697 Gap open (HH/SS/other) | 18/18/6 
    25698 Gap extend | 1 
    25699 SS matrix |  |  | H | S | O 
    25700 ---|---|---|--- 
    25701 H | 6 | -9 | -6 
    25702 S |  | 6 | -6 
    25703 O |  |  | 4 
    25704 Iteration cutoff | 2 
    25705  
    25706 Matchmaker copy of copy of pointy-1pf.pdb, chain 6 (#115) with copy of
    25707 pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 619.1 
    25708 RMSD between 36 pruned atom pairs is 0.000 angstroms; (across all 36 pairs:
    25709 0.000) 
    25710  
    25711 
    25712 > ui mousemode right "rotate selected models"
    25713 
    25714 > view matrix models
    25715 > #115,0.92727,0.31203,0.20691,-96.208,-0.28838,0.9477,-0.13679,35.055,-0.23877,0.067168,0.96875,36.31
    25716 
    25717 > ui mousemode right "translate selected models"
    25718 
    25719 > view matrix models
    25720 > #115,0.92727,0.31203,0.20691,-96.309,-0.28838,0.9477,-0.13679,34.883,-0.23877,0.067168,0.96875,36.64
    25721 
    25722 > mmaker #105/6 to #115/6
    25723 
    25724 Parameters 
    25725 --- 
    25726 Chain pairing | bb 
    25727 Alignment algorithm | Needleman-Wunsch 
    25728 Similarity matrix | BLOSUM-62 
    25729 SS fraction | 0.3 
    25730 Gap open (HH/SS/other) | 18/18/6 
    25731 Gap extend | 1 
    25732 SS matrix |  |  | H | S | O 
    25733 ---|---|---|--- 
    25734 H | 6 | -9 | -6 
    25735 S |  | 6 | -6 
    25736 O |  |  | 4 
    25737 Iteration cutoff | 2 
    25738  
    25739 Matchmaker copy of copy of pointy-1pf.pdb, chain 6 (#115) with copy of
    25740 pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 619.1 
    25741 RMSD between 36 pruned atom pairs is 0.000 angstroms; (across all 36 pairs:
    25742 0.000) 
    25743  
    25744 
    25745 > hide #!115 models
    25746 
    25747 > show #!115 models
    25748 
    25749 > hide #!105 models
    25750 
    25751 > view matrix models
    25752 > #115,0.92727,0.31203,0.20691,-95.861,-0.28838,0.9477,-0.13679,34.798,-0.23877,0.067168,0.96875,36.051
    25753 
    25754 > view matrix models
    25755 > #115,0.92727,0.31203,0.20691,-95.689,-0.28838,0.9477,-0.13679,34.793,-0.23877,0.067168,0.96875,36.086
    25756 
    25757 > view matrix models
    25758 > #115,0.92727,0.31203,0.20691,-95.765,-0.28838,0.9477,-0.13679,34.823,-0.23877,0.067168,0.96875,36.204
    25759 
    25760 > select add #13
    25761 
    25762 334 atoms, 334 bonds, 1 pseudobond, 44 residues, 3 models selected 
    25763 
    25764 > select subtract #13
    25765 
    25766 282 atoms, 283 bonds, 36 residues, 1 model selected 
    25767 
    25768 > select subtract #115
    25769 
    25770 Nothing selected 
    25771 
    25772 > select add #13
    25773 
    25774 52 atoms, 51 bonds, 1 pseudobond, 8 residues, 2 models selected 
    25775 
    25776 > select subtract #13
    25777 
    25778 Nothing selected 
    25779 
    25780 > select add #14
    25781 
    25782 133 atoms, 132 bonds, 1 pseudobond, 17 residues, 2 models selected 
    25783 
    25784 > select subtract #14
    25785 
    25786 Nothing selected 
    25787 
    25788 > select add #15
    25789 
    25790 105 atoms, 104 bonds, 15 residues, 1 model selected 
    25791 
    25792 > select subtract #15
    25793 
    25794 Nothing selected 
    25795 
    25796 > show #!13 models
    25797 
    25798 > select add #13
    25799 
    25800 52 atoms, 51 bonds, 1 pseudobond, 8 residues, 2 models selected 
    25801 
    25802 > select subtract #13
    25803 
    25804 Nothing selected 
    25805 
    25806 > hide #!13 models
    25807 
    25808 > show #!14 models
    25809 
    25810 > select add #14
    25811 
    25812 133 atoms, 132 bonds, 1 pseudobond, 17 residues, 2 models selected 
    25813 
    25814 > select subtract #14
    25815 
    25816 Nothing selected 
    25817 
    25818 > hide #!14 models
    25819 
    25820 > show #!57 models
    25821 
    25822 > select add #57
    25823 
    25824 100 atoms, 98 bonds, 1 pseudobond, 13 residues, 2 models selected 
    25825 
    25826 > select subtract #57
    25827 
    25828 Nothing selected 
    25829 
    25830 > hide #!57 models
    25831 
    25832 > combine #15-18,115
    25833 
    25834 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    25835 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    25836 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    25837 Remapping chain ID '6' in copy of copy of pointy-1pf.pdb #115 to '0' 
    25838 
    25839 > hide #!115 models
    25840 
    25841 > hide #!114 models
    25842 
    25843 > hide #!108 models
    25844 
    25845 > show #!114 models
    25846 
    25847 > hide #!114 models
    25848 
    25849 > show #!113 models
    25850 
    25851 > show #!114 models
    25852 
    25853 > hide #!114 models
    25854 
    25855 > show #!114 models
    25856 
    25857 > hide #!114 models
    25858 
    25859 > show #!112 models
    25860 
    25861 > show #!111 models
    25862 
    25863 > show #!110 models
    25864 
    25865 > combine #15-18,115
    25866 
    25867 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    25868 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    25869 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    25870 Remapping chain ID '6' in copy of copy of pointy-1pf.pdb #115 to '0' 
    25871 
    25872 > mmaker #117/9 to #110/9 pairing ss
    25873 
    25874 Parameters 
    25875 --- 
    25876 Chain pairing | ss 
    25877 Alignment algorithm | Needleman-Wunsch 
    25878 Similarity matrix | BLOSUM-62 
    25879 SS fraction | 0.3 
    25880 Gap open (HH/SS/other) | 18/18/6 
    25881 Gap extend | 1 
    25882 SS matrix |  |  | H | S | O 
    25883 ---|---|---|--- 
    25884 H | 6 | -9 | -6 
    25885 S |  | 6 | -6 
    25886 O |  |  | 4 
    25887 Iteration cutoff | 2 
    25888  
    25889 Matchmaker combination, chain 9 (#110) with combination, chain 9 (#117),
    25890 sequence alignment score = 674.3 
    25891 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    25892 0.000) 
    25893  
    25894 
    25895 > combine #15-18,115
    25896 
    25897 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    25898 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    25899 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    25900 Remapping chain ID '6' in copy of copy of pointy-1pf.pdb #115 to '0' 
    25901 
    25902 > mmaker #118/9 to #111/9 pairing ss
    25903 
    25904 Parameters 
    25905 --- 
    25906 Chain pairing | ss 
    25907 Alignment algorithm | Needleman-Wunsch 
    25908 Similarity matrix | BLOSUM-62 
    25909 SS fraction | 0.3 
    25910 Gap open (HH/SS/other) | 18/18/6 
    25911 Gap extend | 1 
    25912 SS matrix |  |  | H | S | O 
    25913 ---|---|---|--- 
    25914 H | 6 | -9 | -6 
    25915 S |  | 6 | -6 
    25916 O |  |  | 4 
    25917 Iteration cutoff | 2 
    25918  
    25919 Matchmaker combination, chain 9 (#111) with combination, chain 9 (#118),
    25920 sequence alignment score = 674.3 
    25921 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    25922 0.000) 
    25923  
    25924 
    25925 > combine #15-18,115
    25926 
    25927 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    25928 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    25929 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    25930 Remapping chain ID '6' in copy of copy of pointy-1pf.pdb #115 to '0' 
    25931 
    25932 > mmaker #119/9 to #112/9 pairing ss
    25933 
    25934 Parameters 
    25935 --- 
    25936 Chain pairing | ss 
    25937 Alignment algorithm | Needleman-Wunsch 
    25938 Similarity matrix | BLOSUM-62 
    25939 SS fraction | 0.3 
    25940 Gap open (HH/SS/other) | 18/18/6 
    25941 Gap extend | 1 
    25942 SS matrix |  |  | H | S | O 
    25943 ---|---|---|--- 
    25944 H | 6 | -9 | -6 
    25945 S |  | 6 | -6 
    25946 O |  |  | 4 
    25947 Iteration cutoff | 2 
    25948  
    25949 Matchmaker combination, chain 9 (#112) with combination, chain 9 (#119),
    25950 sequence alignment score = 674.3 
    25951 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    25952 0.000) 
    25953  
    25954 
    25955 > combine #15-18,115
    25956 
    25957 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    25958 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    25959 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    25960 Remapping chain ID '6' in copy of copy of pointy-1pf.pdb #115 to '0' 
    25961 
    25962 > mmaker #120/9 to #113/9 pairing ss
    25963 
    25964 Parameters 
    25965 --- 
    25966 Chain pairing | ss 
    25967 Alignment algorithm | Needleman-Wunsch 
    25968 Similarity matrix | BLOSUM-62 
    25969 SS fraction | 0.3 
    25970 Gap open (HH/SS/other) | 18/18/6 
    25971 Gap extend | 1 
    25972 SS matrix |  |  | H | S | O 
    25973 ---|---|---|--- 
    25974 H | 6 | -9 | -6 
    25975 S |  | 6 | -6 
    25976 O |  |  | 4 
    25977 Iteration cutoff | 2 
    25978  
    25979 Matchmaker combination, chain 9 (#113) with combination, chain 9 (#120),
    25980 sequence alignment score = 674.3 
    25981 RMSD between 66 pruned atom pairs is 0.000 angstroms; (across all 66 pairs:
    25982 0.000) 
    25983  
    25984 
    25985 > hide #!113 models
    25986 
    25987 > hide #!112 models
    25988 
    25989 > hide #!110 models
    25990 
    25991 > hide #!111 models
    25992 
    25993 > color #116 #009051ff
    25994 
    25995 > color #117 #d783ffff
    25996 
    25997 > color #118 #ff85ffff
    25998 
    25999 > color #118 #fffc79ff
    26000 
    26001 > color #119 #ff2f92ff
    26002 
    26003 > color #120 #ff7e79ff
    26004 
    26005 > volume #8 level 0.01036
    26006 
    26007 > select #117
    26008 
    26009 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    26010 
    26011 > select subtract 1170
    26012 
    26013 Expected an objects specifier or a keyword 
    26014 
    26015 > select subtract #117/0
    26016 
    26017 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26018 
    26019 > combine #117
    26020 
    26021 > select #117
    26022 
    26023 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    26024 
    26025 > select subtract #117/0
    26026 
    26027 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26028 
    26029 > delete atoms (#!117 & sel)
    26030 
    26031 > delete bonds (#!117 & sel)
    26032 
    26033 > select add #121
    26034 
    26035 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    26036 
    26037 > select subtract #121
    26038 
    26039 Nothing selected 
    26040 
    26041 > hide #!121 models
    26042 
    26043 > select add #117
    26044 
    26045 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26046 
    26047 > view matrix models
    26048 > #117,0.9047,-0.072564,-0.41983,115.59,0.069026,0.99733,-0.023637,-8.3872,0.42043,-0.0075947,0.90729,-62.78
    26049 
    26050 > ui mousemode right "rotate selected models"
    26051 
    26052 > view matrix models
    26053 > #117,0.91525,-0.032929,-0.40155,103.39,0.040202,0.99914,0.0096981,-9.2722,0.40089,-0.025019,0.91579,-57.583
    26054 
    26055 > ui mousemode right "translate selected models"
    26056 
    26057 > view matrix models
    26058 > #117,0.91525,-0.032929,-0.40155,103.29,0.040202,0.99914,0.0096981,-9.3052,0.40089,-0.025019,0.91579,-57.405
    26059 
    26060 > ui mousemode right "rotate selected models"
    26061 
    26062 > view matrix models
    26063 > #117,0.91818,-0.021385,-0.39558,99.643,0.032267,0.99926,0.020875,-9.8589,0.39484,-0.031931,0.9182,-55.499
    26064 
    26065 > view matrix models
    26066 > #117,0.9173,-0.03494,-0.39665,102.31,0.046299,0.99875,0.019096,-12.197,0.39549,-0.035881,0.91777,-54.879
    26067 
    26068 > show #!121 models
    26069 
    26070 > select add #121
    26071 
    26072 1566 atoms, 1567 bonds, 1 pseudobond, 201 residues, 3 models selected 
    26073 
    26074 > select subtract #117
    26075 
    26076 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    26077 
    26078 > select #121
    26079 
    26080 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    26081 
    26082 > select #121/0
    26083 
    26084 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26085 
    26086 > delete atoms sel
    26087 
    26088 > delete bonds sel
    26089 
    26090 > select add #117
    26091 
    26092 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26093 
    26094 > select subtract #117
    26095 
    26096 Nothing selected 
    26097 
    26098 > select add #121
    26099 
    26100 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26101 
    26102 > ui mousemode right "translate selected models"
    26103 
    26104 > view matrix models
    26105 > #121,0.9047,-0.072564,-0.41983,120.63,0.069026,0.99733,-0.023637,-13.058,0.42043,-0.0075947,0.90729,-61.362
    26106 
    26107 > view matrix models
    26108 > #121,0.9047,-0.072564,-0.41983,120.81,0.069026,0.99733,-0.023637,-13.106,0.42043,-0.0075947,0.90729,-61.729
    26109 
    26110 > view matrix models
    26111 > #121,0.9047,-0.072564,-0.41983,122.9,0.069026,0.99733,-0.023637,-12.075,0.42043,-0.0075947,0.90729,-61.957
    26112 
    26113 > view matrix models
    26114 > #121,0.9047,-0.072564,-0.41983,122.86,0.069026,0.99733,-0.023637,-11.05,0.42043,-0.0075947,0.90729,-62.093
    26115 
    26116 > view matrix models
    26117 > #121,0.9047,-0.072564,-0.41983,122.95,0.069026,0.99733,-0.023637,-10.81,0.42043,-0.0075947,0.90729,-62.104
    26118 
    26119 > ui mousemode right "rotate selected models"
    26120 
    26121 [Repeated 1 time(s)]
    26122 
    26123 > view matrix models
    26124 > #121,0.90448,-0.029235,-0.42552,115.89,0.025906,0.99957,-0.01361,-4.418,0.42574,0.0012862,0.90485,-64.39
    26125 
    26126 > view matrix models
    26127 > #121,0.90474,-0.04197,-0.42389,117.93,0.038578,0.99912,-0.016583,-6.3298,0.42422,-0.0013492,0.90556,-63.721
    26128 
    26129 > ui mousemode right "translate selected models"
    26130 
    26131 > view matrix models
    26132 > #121,0.90474,-0.04197,-0.42389,117.47,0.038578,0.99912,-0.016583,-6.2888,0.42422,-0.0013492,0.90556,-63.824
    26133 
    26134 > view matrix models
    26135 > #121,0.90474,-0.04197,-0.42389,117.29,0.038578,0.99912,-0.016583,-7.0555,0.42422,-0.0013492,0.90556,-63.574
    26136 
    26137 > ui mousemode right "rotate selected models"
    26138 
    26139 > view matrix models
    26140 > #121,0.90314,-0.053681,-0.42597,120.27,0.037336,0.99821,-0.046636,-0.52454,0.42772,0.026215,0.90353,-69.135
    26141 
    26142 > ui mousemode right "translate selected models"
    26143 
    26144 > view matrix models
    26145 > #121,0.90314,-0.053681,-0.42597,120.26,0.037336,0.99821,-0.046636,-0.5527,0.42772,0.026215,0.90353,-69.136
    26146 
    26147 > view matrix models
    26148 > #121,0.90314,-0.053681,-0.42597,121.13,0.037336,0.99821,-0.046636,-0.62228,0.42772,0.026215,0.90353,-68.857
    26149 
    26150 > ui mousemode right "rotate selected models"
    26151 
    26152 > view matrix models
    26153 > #121,0.89072,-0.053166,-0.45143,128.75,0.040215,0.99846,-0.038244,-2.9647,0.45277,0.01591,0.89148,-69.591
    26154 
    26155 > ui mousemode right "translate selected models"
    26156 
    26157 > view matrix models
    26158 > #121,0.89072,-0.053166,-0.45143,126.65,0.040215,0.99846,-0.038244,-3.2338,0.45277,0.01591,0.89148,-70.259
    26159 
    26160 > view matrix models
    26161 > #121,0.89072,-0.053166,-0.45143,126.55,0.040215,0.99846,-0.038244,-3.0306,0.45277,0.01591,0.89148,-70.302
    26162 
    26163 > view matrix models
    26164 > #121,0.89072,-0.053166,-0.45143,126.77,0.040215,0.99846,-0.038244,-1.9358,0.45277,0.01591,0.89148,-69.985
    26165 
    26166 > view matrix models
    26167 > #121,0.89072,-0.053166,-0.45143,127.68,0.040215,0.99846,-0.038244,-1.4647,0.45277,0.01591,0.89148,-69.756
    26168 
    26169 > view matrix models
    26170 > #121,0.89072,-0.053166,-0.45143,126.04,0.040215,0.99846,-0.038244,-0.89468,0.45277,0.01591,0.89148,-70.342
    26171 
    26172 > view matrix models
    26173 > #121,0.89072,-0.053166,-0.45143,126.17,0.040215,0.99846,-0.038244,-0.68724,0.45277,0.01591,0.89148,-70.304
    26174 
    26175 > ui mousemode right "rotate selected models"
    26176 
    26177 > view matrix models
    26178 > #121,0.89103,-0.024058,-0.45331,120.94,0.0096872,0.99937,-0.033998,4.5449,0.45385,0.025902,0.8907,-72.27
    26179 
    26180 > view matrix models
    26181 > #121,0.88265,-0.040764,-0.46827,128.88,0.0032221,0.99673,-0.080696,15.86,0.47003,0.069718,0.8799,-81.75
    26182 
    26183 > ui mousemode right "translate selected models"
    26184 
    26185 > view matrix models
    26186 > #121,0.88265,-0.040764,-0.46827,129.15,0.0032221,0.99673,-0.080696,15.984,0.47003,0.069718,0.8799,-81.663
    26187 
    26188 > ui mousemode right "rotate selected models"
    26189 
    26190 > view matrix models
    26191 > #121,0.8834,-0.062895,-0.46438,132.42,0.024592,0.99581,-0.08809,13.273,0.46797,0.066399,0.88125,-80.883
    26192 
    26193 > view matrix models
    26194 > #121,0.88155,-0.063146,-0.46785,133.55,0.058478,0.99799,-0.02451,-7.0135,0.46846,-0.0057526,0.88347,-67.681
    26195 
    26196 > view matrix models
    26197 > #121,0.88172,-0.061461,-0.46774,133.17,0.056642,0.9981,-0.024376,-6.6845,0.46835,-0.0050015,0.88353,-67.815
    26198 
    26199 > view matrix models
    26200 > #121,0.88196,-0.059159,-0.46759,132.66,0.054132,0.99824,-0.024192,-6.2338,0.4682,-0.0039756,0.88361,-67.997
    26201 
    26202 > select subtract #121
    26203 
    26204 Nothing selected 
    26205 
    26206 > combine #119
    26207 
    26208 > select #119/0
    26209 
    26210 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26211 
    26212 > hide #!122 models
    26213 
    26214 > show #!122 models
    26215 
    26216 > delete atoms sel
    26217 
    26218 > delete bonds sel
    26219 
    26220 > hide #!122 models
    26221 
    26222 > ui mousemode right "translate selected models"
    26223 
    26224 > select add #119
    26225 
    26226 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26227 
    26228 > view matrix models
    26229 > #119,0.90206,-0.017777,-0.43125,111.03,0.027125,0.99951,0.015537,-35.264,0.43076,-0.025713,0.9021,-58.407
    26230 
    26231 > view matrix models
    26232 > #119,0.90206,-0.017777,-0.43125,110.69,0.027125,0.99951,0.015537,-36.024,0.43076,-0.025713,0.9021,-58.616
    26233 
    26234 > view matrix models
    26235 > #119,0.90206,-0.017777,-0.43125,112.78,0.027125,0.99951,0.015537,-36.119,0.43076,-0.025713,0.9021,-57.587
    26236 
    26237 > view matrix models
    26238 > #119,0.90206,-0.017777,-0.43125,112.82,0.027125,0.99951,0.015537,-37.052,0.43076,-0.025713,0.9021,-57.569
    26239 
    26240 > view matrix models
    26241 > #119,0.90206,-0.017777,-0.43125,114.33,0.027125,0.99951,0.015537,-36.778,0.43076,-0.025713,0.9021,-56.804
    26242 
    26243 > view matrix models
    26244 > #119,0.90206,-0.017777,-0.43125,114.28,0.027125,0.99951,0.015537,-36.833,0.43076,-0.025713,0.9021,-56.824
    26245 
    26246 > ui mousemode right "rotate selected models"
    26247 
    26248 > view matrix models
    26249 > #119,0.90167,-0.032116,-0.43123,117.09,0.0261,0.99946,-0.019864,-29.423,0.43163,0.0066559,0.90203,-63.158
    26250 
    26251 > ui mousemode right "translate selected models"
    26252 
    26253 > view matrix models
    26254 > #119,0.90167,-0.032116,-0.43123,116.53,0.0261,0.99946,-0.019864,-29.33,0.43163,0.0066559,0.90203,-63.349
    26255 
    26256 > show #!122 models
    26257 
    26258 > hide #!116 models
    26259 
    26260 > select #122
    26261 
    26262 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    26263 
    26264 > select subtract #122/0
    26265 
    26266 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26267 
    26268 > delete atoms (#!122 & sel)
    26269 
    26270 > delete bonds (#!122 & sel)
    26271 
    26272 > select add #122
    26273 
    26274 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26275 
    26276 > ui mousemode right "translate selected models"
    26277 
    26278 > view matrix models
    26279 > #122,0.90206,-0.017777,-0.43125,106.75,0.027125,0.99951,0.015537,-32.572,0.43076,-0.025713,0.9021,-59.859
    26280 
    26281 > show #!116 models
    26282 
    26283 > ui mousemode right "rotate selected models"
    26284 
    26285 > view matrix models
    26286 > #122,0.90223,-0.024717,-0.43054,107.76,0.034642,0.99928,0.015228,-33.953,0.42986,-0.028654,0.90244,-59.248
    26287 
    26288 > view matrix models
    26289 > #122,0.9043,-0.019749,-0.42643,105.74,0.03258,0.99921,0.022815,-34.956,0.42564,-0.034524,0.90423,-57.763
    26290 
    26291 > select clear
    26292 
    26293 [Repeated 1 time(s)]
    26294 
    26295 > hide #!120 models
    26296 
    26297 > show #!120 models
    26298 
    26299 > combine #120
    26300 
    26301 > select #120/0
    26302 
    26303 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26304 
    26305 > delete atoms sel
    26306 
    26307 > delete bonds sel
    26308 
    26309 > select #123
    26310 
    26311 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    26312 
    26313 > select subtract #123/0
    26314 
    26315 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26316 
    26317 > delete atoms (#!123 & sel)
    26318 
    26319 > delete bonds (#!123 & sel)
    26320 
    26321 > select add #123
    26322 
    26323 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26324 
    26325 > ui mousemode right "translate selected models"
    26326 
    26327 > view matrix models
    26328 > #123,0.91402,-0.10959,-0.39059,121.34,0.090831,0.99366,-0.066248,69.445,0.39537,0.025074,0.91818,-63.777
    26329 
    26330 > view matrix models
    26331 > #123,0.91402,-0.10959,-0.39059,121.12,0.090831,0.99366,-0.066248,69.852,0.39537,0.025074,0.91818,-63.789
    26332 
    26333 > view matrix models
    26334 > #123,0.91402,-0.10959,-0.39059,121.06,0.090831,0.99366,-0.066248,69.853,0.39537,0.025074,0.91818,-63.805
    26335 
    26336 > ui mousemode right "rotate selected models"
    26337 
    26338 > view matrix models
    26339 > #123,0.92417,-0.052791,-0.37831,107.16,0.053136,0.99854,-0.0095338,65.813,0.37826,-0.011291,0.92563,-55.689
    26340 
    26341 > view matrix models
    26342 > #123,0.92469,-0.048413,-0.37762,106.19,0.051513,0.99867,-0.0018945,64.679,0.37721,-0.0177,0.92596,-54.46
    26343 
    26344 > ui mousemode right "translate selected models"
    26345 
    26346 > view matrix models
    26347 > #123,0.92469,-0.048413,-0.37762,106.98,0.051513,0.99867,-0.0018945,65.071,0.37721,-0.0177,0.92596,-55.547
    26348 
    26349 > view matrix models
    26350 > #123,0.92469,-0.048413,-0.37762,106.82,0.051513,0.99867,-0.0018945,64.704,0.37721,-0.0177,0.92596,-55.548
    26351 
    26352 > select add #121
    26353 
    26354 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    26355 
    26356 > select subtract #123
    26357 
    26358 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26359 
    26360 > view matrix models
    26361 > #121,0.88196,-0.059159,-0.46759,133.8,0.054132,0.99824,-0.024192,-7.8202,0.4682,-0.0039756,0.88361,-67.864
    26362 
    26363 > view matrix models
    26364 > #121,0.88196,-0.059159,-0.46759,133.4,0.054132,0.99824,-0.024192,-8.182,0.4682,-0.0039756,0.88361,-67.951
    26365 
    26366 > select subtract #121
    26367 
    26368 Nothing selected 
    26369 
    26370 > select add #122
    26371 
    26372 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26373 
    26374 > select subtract #122
    26375 
    26376 Nothing selected 
    26377 
    26378 > select add #119
    26379 
    26380 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26381 
    26382 > view matrix models
    26383 > #119,0.90167,-0.032116,-0.43123,116.48,0.0261,0.99946,-0.019864,-30.084,0.43163,0.0066559,0.90203,-63.277
    26384 
    26385 > view matrix models
    26386 > #119,0.90167,-0.032116,-0.43123,117.23,0.0261,0.99946,-0.019864,-30.38,0.43163,0.0066559,0.90203,-62.998
    26387 
    26388 > select clear
    26389 
    26390 > select add #118
    26391 
    26392 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    26393 
    26394 > combine #118
    26395 
    26396 > select #118/0
    26397 
    26398 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26399 
    26400 > delete atoms sel
    26401 
    26402 > delete bonds sel
    26403 
    26404 > select #118/0
    26405 
    26406 Nothing selected 
    26407 
    26408 > select #124
    26409 
    26410 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    26411 
    26412 > select subtract #124/0
    26413 
    26414 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26415 
    26416 > delete atoms (#!124 & sel)
    26417 
    26418 > delete bonds (#!124 & sel)
    26419 
    26420 > hide #!124 models
    26421 
    26422 > show #!124 models
    26423 
    26424 Drag select of 8 postprocess_masked330_onepf.mrc , 42 residues 
    26425 
    26426 > select clear
    26427 
    26428 [Repeated 1 time(s)]
    26429 
    26430 > select add #116
    26431 
    26432 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    26433 
    26434 > ui mousemode right "translate selected models"
    26435 
    26436 > view matrix models
    26437 > #116,0.92461,-0.034563,-0.37933,99.365,0.042229,0.99904,0.011903,14.271,0.37856,-0.027025,0.92518,-54.438
    26438 
    26439 > select add #121
    26440 
    26441 2286 atoms, 2285 bonds, 2 pseudobonds, 294 residues, 4 models selected 
    26442 
    26443 > ui mousemode right "translate selected models"
    26444 
    26445 > view matrix models
    26446 > #116,0.92461,-0.034563,-0.37933,100.04,0.042229,0.99904,0.011903,13.411,0.37856,-0.027025,0.92518,-54.188,#121,0.88196,-0.059159,-0.46759,134.08,0.054132,0.99824,-0.024192,-9.0412,0.4682,-0.0039756,0.88361,-67.701
    26447 
    26448 > undo
    26449 
    26450 > select subtract #116
    26451 
    26452 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26453 
    26454 > view matrix models
    26455 > #121,0.88196,-0.059159,-0.46759,135,0.054132,0.99824,-0.024192,-9.5991,0.4682,-0.0039756,0.88361,-67.372
    26456 
    26457 > view matrix models
    26458 > #121,0.88196,-0.059159,-0.46759,136.19,0.054132,0.99824,-0.024192,-9.4144,0.4682,-0.0039756,0.88361,-66.863
    26459 
    26460 > ui mousemode right "rotate selected models"
    26461 
    26462 > view matrix models
    26463 > #121,0.88213,-0.053304,-0.46797,135.12,0.04776,0.99858,-0.023712,-8.2674,0.46857,-0.0014331,0.88342,-67.385
    26464 
    26465 > ui mousemode right "rotate selected models"
    26466 
    26467 > view matrix models
    26468 > #121,0.87915,-0.07731,-0.47023,140.76,0.03842,0.99504,-0.091762,8.1454,0.47499,0.062606,0.87776,-79.76
    26469 
    26470 > view matrix models
    26471 > #121,0.87241,-0.075627,-0.48289,144.4,0.037871,0.99545,-0.087481,7.3114,0.48731,0.058032,0.8713,-80.105
    26472 
    26473 > ui mousemode right "translate selected models"
    26474 
    26475 > view matrix models
    26476 > #121,0.87241,-0.075627,-0.48289,143.95,0.037871,0.99545,-0.087481,7.3836,0.48731,0.058032,0.8713,-79.408
    26477 
    26478 > select add #124
    26479 
    26480 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    26481 
    26482 > select subtract #121
    26483 
    26484 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26485 
    26486 > ui mousemode right "rotate selected models"
    26487 
    26488 > view matrix models
    26489 > #124,0.91939,-0.0091586,-0.39325,101.04,0.029906,0.99846,0.046665,34.003,0.39221,-0.054663,0.91825,-51.194
    26490 
    26491 > ui mousemode right "translate selected models"
    26492 
    26493 > view matrix models
    26494 > #124,0.91939,-0.0091586,-0.39325,101.86,0.029906,0.99846,0.046665,34.582,0.39221,-0.054663,0.91825,-50.886
    26495 
    26496 > select add #122
    26497 
    26498 564 atoms, 566 bonds, 72 residues, 2 models selected 
    26499 
    26500 > select subtract #122
    26501 
    26502 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26503 
    26504 > select subtract #124
    26505 
    26506 Nothing selected 
    26507 
    26508 > select add #119
    26509 
    26510 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26511 
    26512 > ui mousemode right "rotate selected models"
    26513 
    26514 > ui mousemode right "translate selected models"
    26515 
    26516 > view matrix models
    26517 > #119,0.90167,-0.032116,-0.43123,118.27,0.0261,0.99946,-0.019864,-31.964,0.43163,0.0066559,0.90203,-62.734
    26518 
    26519 > ui mousemode right "rotate selected models"
    26520 
    26521 > view matrix models
    26522 > #119,0.89821,-0.087235,-0.43082,129.4,0.082583,0.99615,-0.02953,-40.967,0.43173,-0.0090533,0.90196,-59.747
    26523 
    26524 Drag select of 8 postprocess_masked330_onepf.mrc , 218 residues, 3 pseudobonds 
    26525 Drag select of 8 postprocess_masked330_onepf.mrc , 261 residues, 2 pseudobonds 
    26526 Drag select of 8 postprocess_masked330_onepf.mrc , 113 residues, 1 pseudobonds 
    26527 
    26528 > select clear
    26529 
    26530 > select add #120
    26531 
    26532 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26533 
    26534 > select subtract #120
    26535 
    26536 Nothing selected 
    26537 
    26538 > select add #123
    26539 
    26540 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26541 
    26542 > view matrix models
    26543 > #123,0.92836,0.00011939,-0.37168,96.776,0.0036233,0.99995,0.0093714,71.791,0.37166,-0.010047,0.92832,-56.192
    26544 
    26545 > undo
    26546 
    26547 > ui mousemode right "translate selected models"
    26548 
    26549 > view matrix models
    26550 > #123,0.92469,-0.048413,-0.37762,107.91,0.051513,0.99867,-0.0018945,66.239,0.37721,-0.0177,0.92596,-55.183
    26551 
    26552 > view matrix models
    26553 > #123,0.92469,-0.048413,-0.37762,108.07,0.051513,0.99867,-0.0018945,66.764,0.37721,-0.0177,0.92596,-55.366
    26554 
    26555 > ui mousemode right "rotate selected models"
    26556 
    26557 > view matrix models
    26558 > #123,0.92957,-0.044719,-0.36591,104.29,0.051134,0.99866,0.007855,65.013,0.36507,-0.026013,0.93062,-52.447
    26559 
    26560 > select add #124
    26561 
    26562 564 atoms, 566 bonds, 72 residues, 2 models selected 
    26563 
    26564 > select subtract #123
    26565 
    26566 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26567 Drag select of 8 postprocess_masked330_onepf.mrc 
    26568 
    26569 > select add #124
    26570 
    26571 282 atoms, 283 bonds, 36 residues, 3 models selected 
    26572 
    26573 > select clear
    26574 
    26575 > select add #124
    26576 
    26577 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26578 
    26579 > view matrix models
    26580 > #124,0.91548,-0.020115,-0.40185,106.09,0.023953,0.9997,0.0045302,43.437,0.40164,-0.013773,0.91569,-59.173
    26581 
    26582 > undo
    26583 
    26584 > ui mousemode right "translate selected models"
    26585 
    26586 > view matrix models
    26587 > #124,0.91939,-0.0091586,-0.39325,101.75,0.029906,0.99846,0.046665,35.292,0.39221,-0.054663,0.91825,-50.855
    26588 
    26589 > ui mousemode right "rotate selected models"
    26590 
    26591 > view matrix models
    26592 > #124,0.91665,-0.0066601,-0.39963,103.06,0.011752,0.99988,0.010292,45.436,0.39951,-0.014131,0.91662,-58.837
    26593 
    26594 > view matrix models
    26595 > #124,0.91969,0.002297,-0.39264,99.644,0.0081759,0.99965,0.024999,43.422,0.39256,-0.026201,0.91935,-55.942
    26596 
    26597 > view matrix models
    26598 > #124,0.91916,-0.02019,-0.39336,103.68,0.03212,0.9992,0.023769,39.022,0.39256,-0.034482,0.91908,-54.491
    26599 
    26600 > view matrix models
    26601 > #124,0.91666,-0.023597,-0.39896,105.8,0.034339,0.99921,0.019798,39.327,0.39818,-0.031849,0.91675,-55.605
    26602 
    26603 > select clear
    26604 
    26605 > select add #124
    26606 
    26607 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26608 
    26609 > view matrix models
    26610 > #124,0.9157,-0.038788,-0.39998,108.75,0.049541,0.99863,0.016576,37.04,0.39879,-0.034994,0.91637,-55.122
    26611 
    26612 > ui mousemode right "translate selected models"
    26613 
    26614 > view matrix models
    26615 > #124,0.9157,-0.038788,-0.39998,108.45,0.049541,0.99863,0.016576,36.045,0.39879,-0.034994,0.91637,-55.162
    26616 
    26617 > view matrix models
    26618 > #124,0.9157,-0.038788,-0.39998,108.6,0.049541,0.99863,0.016576,36.058,0.39879,-0.034994,0.91637,-55.041
    26619 
    26620 > view matrix models
    26621 > #124,0.9157,-0.038788,-0.39998,108.55,0.049541,0.99863,0.016576,35.878,0.39879,-0.034994,0.91637,-55.039
    26622 
    26623 > view matrix models
    26624 > #124,0.9157,-0.038788,-0.39998,108.87,0.049541,0.99863,0.016576,35.836,0.39879,-0.034994,0.91637,-54.912
    26625 
    26626 > select clear
    26627 
    26628 Drag select of 8 postprocess_masked330_onepf.mrc 
    26629 
    26630 > select clear
    26631 
    26632 > select add #116
    26633 
    26634 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    26635 
    26636 > ui mousemode right "translate selected models"
    26637 
    26638 > view matrix models
    26639 > #116,0.92461,-0.034563,-0.37933,99.954,0.042229,0.99904,0.011903,14.079,0.37856,-0.027025,0.92518,-54.444
    26640 
    26641 > undo
    26642 
    26643 > select clear
    26644 
    26645 > select add #121
    26646 
    26647 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26648 
    26649 > view matrix models
    26650 > #121,0.87241,-0.075627,-0.48289,142.17,0.037871,0.99545,-0.087481,8.3856,0.48731,0.058032,0.8713,-79.861
    26651 
    26652 > select subtract #121
    26653 
    26654 Nothing selected 
    26655 
    26656 > select add #122
    26657 
    26658 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26659 
    26660 > select subtract #122
    26661 
    26662 Nothing selected 
    26663 
    26664 > select add #119
    26665 
    26666 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26667 
    26668 > view matrix models
    26669 > #119,0.89821,-0.087235,-0.43082,127.96,0.082583,0.99615,-0.02953,-39.586,0.43173,-0.0090533,0.90196,-60.122
    26670 
    26671 > ui mousemode right "rotate selected models"
    26672 
    26673 > view matrix models
    26674 > #119,0.89858,-0.066033,-0.43381,124.45,0.062225,0.9978,-0.022989,-37.049,0.43437,-0.0063365,0.90071,-60.929
    26675 
    26676 > select add #118
    26677 
    26678 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    26679 
    26680 > select subtract #119
    26681 
    26682 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26683 
    26684 > select subtract #118
    26685 
    26686 Nothing selected 
    26687 
    26688 > select add #124
    26689 
    26690 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26691 
    26692 > view matrix models
    26693 > #124,0.91665,-0.034923,-0.39816,107.69,0.049372,0.99844,0.026091,34.12,0.39663,-0.043574,0.91695,-53.143
    26694 
    26695 > select subtract #124
    26696 
    26697 Nothing selected 
    26698 
    26699 > select add #121
    26700 
    26701 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26702 
    26703 > select subtract #121
    26704 
    26705 Nothing selected 
    26706 
    26707 > select add #117
    26708 
    26709 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26710 
    26711 > view matrix models
    26712 > #117,0.91988,-0.024219,-0.39145,99.015,0.045676,0.99792,0.045596,-16.899,0.38953,-0.059822,0.91907,-49.903
    26713 
    26714 > view matrix models
    26715 > #117,0.91603,-0.02896,-0.40006,102.19,0.036059,0.9993,0.010226,-8.6155,0.39948,-0.023793,0.91643,-57.457
    26716 
    26717 > select add #123
    26718 
    26719 564 atoms, 566 bonds, 72 residues, 2 models selected 
    26720 
    26721 > select subtract #117
    26722 
    26723 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26724 
    26725 > view matrix models
    26726 > #123,0.9285,-0.026146,-0.37042,102.21,0.047608,0.99767,0.048916,58.181,0.36828,-0.063053,0.92758,-46.245
    26727 
    26728 > view matrix models
    26729 > #123,0.9281,0.00020957,-0.37233,98.188,0.015993,0.99905,0.040427,65.752,0.37198,-0.043475,0.92722,-50.218
    26730 
    26731 > select clear
    26732 
    26733 [Repeated 1 time(s)]
    26734 
    26735 > select add #123
    26736 
    26737 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26738 
    26739 > select subtract #123
    26740 
    26741 Nothing selected 
    26742 
    26743 > select add #120
    26744 
    26745 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26746 
    26747 > view matrix models
    26748 > #120,0.92841,-0.11312,-0.35392,110.3,0.090699,0.99271,-0.079353,69.809,0.36032,0.041571,0.9319,-63.019
    26749 
    26750 > undo
    26751 
    26752 > ui mousemode right "translate selected models"
    26753 
    26754 > view matrix models
    26755 > #120,0.91402,-0.10959,-0.39059,116.52,0.090831,0.99366,-0.066248,67.833,0.39537,0.025074,0.91818,-64.754
    26756 
    26757 > view matrix models
    26758 > #120,0.91402,-0.10959,-0.39059,116.38,0.090831,0.99366,-0.066248,67.839,0.39537,0.025074,0.91818,-64.465
    26759 
    26760 > ui mousemode right "rotate selected models"
    26761 
    26762 > view matrix models
    26763 > #120,0.92635,-0.10878,-0.36061,107.6,0.090384,0.99361,-0.067546,68.203,0.36565,0.029978,0.93027,-61.752
    26764 
    26765 > select add #121
    26766 
    26767 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    26768 
    26769 > select subtract #120
    26770 
    26771 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26772 
    26773 > view matrix models
    26774 > #121,0.87287,-0.10668,-0.47615,146.63,0.079919,0.99389,-0.076168,-2.2496,0.48137,0.028431,0.87606,-73.965
    26775 
    26776 > select add #123
    26777 
    26778 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    26779 
    26780 > select subtract #123
    26781 
    26782 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26783 
    26784 > select subtract #121
    26785 
    26786 Nothing selected 
    26787 
    26788 > select add #120
    26789 
    26790 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26791 
    26792 > select subtract #120
    26793 
    26794 Nothing selected 
    26795 
    26796 > select add #120
    26797 
    26798 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26799 
    26800 > view matrix models
    26801 > #120,0.92387,-0.081627,-0.37391,105.64,0.084114,0.99641,-0.0096927,57.208,0.37336,-0.022496,0.92742,-52.752
    26802 
    26803 > ui mousemode right "translate selected models"
    26804 
    26805 > view matrix models
    26806 > #120,0.92387,-0.081627,-0.37391,105.59,0.084114,0.99641,-0.0096927,56.783,0.37336,-0.022496,0.92742,-54.21
    26807 
    26808 > select add #124
    26809 
    26810 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    26811 
    26812 > select subtract #124
    26813 
    26814 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26815 
    26816 > select add #118
    26817 
    26818 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    26819 
    26820 > select subtract #120
    26821 
    26822 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26823 
    26824 > ui mousemode right "rotate selected models"
    26825 
    26826 > view matrix models
    26827 > #118,0.92351,-0.1047,-0.369,113.05,0.10165,0.99443,-0.027747,34.431,0.36985,-0.011884,0.92902,-55.978
    26828 
    26829 > view matrix models
    26830 > #118,0.92103,-0.10521,-0.37502,114.88,0.10468,0.99427,-0.021841,32.641,0.37516,-0.019141,0.92676,-55.228
    26831 
    26832 > select add #124
    26833 
    26834 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    26835 
    26836 > select subtract #124
    26837 
    26838 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26839 
    26840 > select add #119
    26841 
    26842 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    26843 
    26844 > select subtract #119
    26845 
    26846 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26847 
    26848 > view matrix models
    26849 > #118,0.92032,-0.11143,-0.37495,116.2,0.11102,0.99356,-0.022759,31.66,0.37507,-0.020683,0.92676,-54.916
    26850 
    26851 > undo
    26852 
    26853 > ui mousemode right "translate selected models"
    26854 
    26855 > view matrix models
    26856 > #118,0.92103,-0.10521,-0.37502,113.12,0.10468,0.99427,-0.021841,32.74,0.37516,-0.019141,0.92676,-55.659
    26857 
    26858 > select add #121
    26859 
    26860 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    26861 
    26862 > select subtract #118
    26863 
    26864 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26865 
    26866 > view matrix models
    26867 > #121,0.87287,-0.10668,-0.47615,145.76,0.079919,0.99389,-0.076168,-1.8199,0.48137,0.028431,0.87606,-74.151
    26868 
    26869 > select subtract #121
    26870 
    26871 Nothing selected 
    26872 
    26873 > select add #119
    26874 
    26875 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26876 
    26877 > view matrix models
    26878 > #119,0.89858,-0.066033,-0.43381,123.76,0.062225,0.9978,-0.022989,-36.999,0.43437,-0.0063365,0.90071,-61.107
    26879 
    26880 > view matrix models
    26881 > #119,0.89858,-0.066033,-0.43381,123.83,0.062225,0.9978,-0.022989,-36.378,0.43437,-0.0063365,0.90071,-61.021
    26882 
    26883 > view matrix models
    26884 > #119,0.89858,-0.066033,-0.43381,123.81,0.062225,0.9978,-0.022989,-36.606,0.43437,-0.0063365,0.90071,-60.97
    26885 
    26886 > select clear
    26887 
    26888 > select add #122
    26889 
    26890 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26891 
    26892 > view matrix models
    26893 > #122,0.9043,-0.019749,-0.42643,107.34,0.03258,0.99921,0.022815,-33.206,0.42564,-0.034524,0.90423,-57.227
    26894 
    26895 > select add #121
    26896 
    26897 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    26898 
    26899 > select subtract #121
    26900 
    26901 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26902 
    26903 > select subtract #122
    26904 
    26905 Nothing selected 
    26906 
    26907 > select add #117
    26908 
    26909 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26910 
    26911 > view matrix models
    26912 > #117,0.91603,-0.02896,-0.40006,101.6,0.036059,0.9993,0.010226,-8.4664,0.39948,-0.023793,0.91643,-57.632
    26913 
    26914 > view matrix models
    26915 > #117,0.91603,-0.02896,-0.40006,102.11,0.036059,0.9993,0.010226,-8.4766,0.39948,-0.023793,0.91643,-57.476
    26916 
    26917 > view matrix models
    26918 > #117,0.91603,-0.02896,-0.40006,102.04,0.036059,0.9993,0.010226,-7.6711,0.39948,-0.023793,0.91643,-57.475
    26919 
    26920 > view matrix models
    26921 > #117,0.91603,-0.02896,-0.40006,102.06,0.036059,0.9993,0.010226,-7.6802,0.39948,-0.023793,0.91643,-57.56
    26922 
    26923 > ui mousemode right "rotate selected models"
    26924 
    26925 > view matrix models
    26926 > #117,0.91624,-0.02555,-0.39983,101.4,0.035644,0.99921,0.017831,-9.0077,0.39905,-0.030588,0.91642,-56.324
    26927 
    26928 > select clear
    26929 
    26930 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    26931 > MRCLaboratoryofMolecularBiology/Documents/Carter
    26932 > Lab/Diorge/Membranes/Fit14-22.cxs"
    26933 
    26934 > select add #121
    26935 
    26936 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    26937 
    26938 > view matrix models
    26939 > #121,0.87136,-0.11557,-0.47683,147.9,0.080636,0.99238,-0.093172,1.7738,0.48396,0.042737,0.87404,-77.002
    26940 
    26941 > select add #123
    26942 
    26943 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    26944 
    26945 > select subtract #121
    26946 
    26947 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26948 
    26949 > ui mousemode right "translate selected models"
    26950 
    26951 > view matrix models
    26952 > #123,0.9281,0.00020957,-0.37233,98.137,0.015993,0.99905,0.040427,65.021,0.37198,-0.043475,0.92722,-49.922
    26953 
    26954 > view matrix models
    26955 > #123,0.9281,0.00020957,-0.37233,97.795,0.015993,0.99905,0.040427,64.654,0.37198,-0.043475,0.92722,-50.013
    26956 
    26957 > view matrix models
    26958 > #123,0.9281,0.00020957,-0.37233,97.612,0.015993,0.99905,0.040427,64.482,0.37198,-0.043475,0.92722,-50.06
    26959 
    26960 > view matrix models
    26961 > #123,0.9281,0.00020957,-0.37233,97.556,0.015993,0.99905,0.040427,64.352,0.37198,-0.043475,0.92722,-49.913
    26962 
    26963 > select clear
    26964 
    26965 > select add #123
    26966 
    26967 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26968 
    26969 > view matrix models
    26970 > #123,0.9281,0.00020957,-0.37233,97.356,0.015993,0.99905,0.040427,62.486,0.37198,-0.043475,0.92722,-49.919
    26971 
    26972 > view matrix models
    26973 > #123,0.9281,0.00020957,-0.37233,97.044,0.015993,0.99905,0.040427,62.524,0.37198,-0.043475,0.92722,-49.641
    26974 
    26975 > select add #121
    26976 
    26977 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    26978 
    26979 > select subtract #121
    26980 
    26981 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26982 
    26983 > select subtract #123
    26984 
    26985 Nothing selected 
    26986 
    26987 > select add #117
    26988 
    26989 282 atoms, 283 bonds, 36 residues, 1 model selected 
    26990 
    26991 > view matrix models
    26992 > #117,0.91624,-0.02555,-0.39983,101.02,0.035644,0.99921,0.017831,-10.63,0.39905,-0.030588,0.91642,-56.316
    26993 
    26994 > view matrix models
    26995 > #117,0.91624,-0.02555,-0.39983,101.04,0.035644,0.99921,0.017831,-10.668,0.39905,-0.030588,0.91642,-56.384
    26996 
    26997 > view matrix models
    26998 > #117,0.91624,-0.02555,-0.39983,101.3,0.035644,0.99921,0.017831,-10.686,0.39905,-0.030588,0.91642,-56.33
    26999 
    27000 > view matrix models
    27001 > #117,0.91624,-0.02555,-0.39983,101.36,0.035644,0.99921,0.017831,-10.353,0.39905,-0.030588,0.91642,-56.315
    27002 
    27003 > select add #123
    27004 
    27005 564 atoms, 566 bonds, 72 residues, 2 models selected 
    27006 
    27007 > select subtract #117
    27008 
    27009 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27010 
    27011 > ui mousemode right "rotate selected models"
    27012 
    27013 > view matrix models
    27014 > #123,0.92215,-0.0042673,-0.38682,101.69,0.017046,0.99942,0.02961,64.282,0.38646,-0.033899,0.92168,-53.069
    27015 
    27016 > select subtract #123
    27017 
    27018 Nothing selected 
    27019 
    27020 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    27021 > MRCLaboratoryofMolecularBiology/Documents/Carter
    27022 > Lab/Diorge/Membranes/Fit14-22.cxs"
    27023 
    27024 > select add #123
    27025 
    27026 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27027 
    27028 > ui mousemode right "translate selected models"
    27029 
    27030 > view matrix models
    27031 > #123,0.92215,-0.0042673,-0.38682,101.39,0.017046,0.99942,0.02961,65.539,0.38646,-0.033899,0.92168,-53.098
    27032 
    27033 > ui mousemode right "rotate selected models"
    27034 
    27035 > view matrix models
    27036 > #123,0.91969,-0.050565,-0.38938,110.18,0.064011,0.99771,0.021627,58.089,0.38739,-0.044815,0.92082,-51.275
    27037 
    27038 > view matrix models
    27039 > #123,0.92398,-0.037161,-0.38064,105.43,0.061329,0.99679,0.051556,53.166,0.3775,-0.070981,0.92328,-45.368
    27040 
    27041 > select add #124
    27042 
    27043 564 atoms, 566 bonds, 72 residues, 2 models selected 
    27044 
    27045 > select subtract #123
    27046 
    27047 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27048 
    27049 > view matrix models
    27050 > #124,0.91616,-0.03992,-0.39883,108.75,0.054203,0.99823,0.024593,33.487,0.39714,-0.044149,0.9167,-53.1
    27051 
    27052 > view matrix models
    27053 > #124,0.92234,-0.031977,-0.38506,103.62,0.044769,0.9987,0.024298,35.316,0.38378,-0.03965,0.92257,-52.336
    27054 
    27055 > view matrix models
    27056 > #124,0.92928,-0.018194,-0.36892,96.898,0.029584,0.99924,0.02524,38.033,0.36818,-0.034369,0.92912,-51.389
    27057 
    27058 > select clear
    27059 
    27060 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    27061 > MRCLaboratoryofMolecularBiology/Documents/Carter
    27062 > Lab/Diorge/Membranes/Fit14-22.cxs"
    27063 
    27064 > select add #122
    27065 
    27066 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27067 
    27068 > select subtract #122
    27069 
    27070 Nothing selected 
    27071 
    27072 > select add #119
    27073 
    27074 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27075 
    27076 > ui mousemode right "rotate selected models"
    27077 
    27078 > view matrix models
    27079 > #119,0.89867,-0.021061,-0.43811,116.1,0.0135,0.9997,-0.020366,-27.496,0.43841,0.012388,0.89869,-64.958
    27080 
    27081 > select add #124
    27082 
    27083 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27084 
    27085 > select subtract #119
    27086 
    27087 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27088 
    27089 > view matrix models
    27090 > #124,0.92546,-0.080234,-0.37025,108.39,0.09408,0.99537,0.019459,27.092,0.36698,-0.052841,0.92873,-47.955
    27091 
    27092 > select add #116
    27093 
    27094 1566 atoms, 1567 bonds, 1 pseudobond, 201 residues, 3 models selected 
    27095 
    27096 > select subtract #116
    27097 
    27098 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27099 
    27100 > select subtract #124
    27101 
    27102 Nothing selected 
    27103 
    27104 > select add #123
    27105 
    27106 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27107 
    27108 > view matrix models
    27109 > #123,0.92216,-0.061529,-0.38188,110.14,0.087812,0.99479,0.051767,48.258,0.3767,-0.08127,0.92276,-43.373
    27110 
    27111 > select add #121
    27112 
    27113 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27114 
    27115 > select subtract #123
    27116 
    27117 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27118 
    27119 > view matrix models
    27120 > #121,0.87298,-0.078357,-0.48143,141.41,0.040581,0.99526,-0.088401,8.4814,0.48607,0.057635,0.87202,-79.863
    27121 
    27122 > view matrix models
    27123 > #121,0.87271,-0.087712,-0.48029,143.02,0.050651,0.99469,-0.089619,6.7697,0.4856,0.053884,0.87252,-79.153
    27124 
    27125 > ui mousemode right "translate selected models"
    27126 
    27127 > view matrix models
    27128 > #121,0.87271,-0.087712,-0.48029,143.68,0.050651,0.99469,-0.089619,6.8585,0.4856,0.053884,0.87252,-78.888
    27129 
    27130 > ui mousemode right "rotate selected models"
    27131 
    27132 > view matrix models
    27133 > #121,0.87369,-0.081045,-0.47969,142.09,0.055882,0.99622,-0.066535,0.80429,0.48326,0.031325,0.87491,-74.595
    27134 
    27135 > select add #123
    27136 
    27137 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27138 
    27139 > select subtract #121
    27140 
    27141 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27142 
    27143 > ui mousemode right "translate selected models"
    27144 
    27145 > view matrix models
    27146 > #123,0.92216,-0.061529,-0.38188,110.46,0.087812,0.99479,0.051767,48.637,0.3767,-0.08127,0.92276,-44.16
    27147 
    27148 > view matrix models
    27149 > #123,0.92216,-0.061529,-0.38188,110.45,0.087812,0.99479,0.051767,48.841,0.3767,-0.08127,0.92276,-44.175
    27150 
    27151 > select add #122
    27152 
    27153 564 atoms, 566 bonds, 72 residues, 2 models selected 
    27154 
    27155 > select subtract #123
    27156 
    27157 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27158 
    27159 > select subtract #122
    27160 
    27161 Nothing selected 
    27162 
    27163 > select add #119
    27164 
    27165 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27166 
    27167 > ui mousemode right "rotate selected models"
    27168 
    27169 > ui mousemode right "translate selected models"
    27170 
    27171 > view matrix models
    27172 > #119,0.89867,-0.021061,-0.43811,117.04,0.0135,0.9997,-0.020366,-27.942,0.43841,0.012388,0.89869,-64.365
    27173 
    27174 > select add #122
    27175 
    27176 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27177 
    27178 > select subtract #119
    27179 
    27180 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27181 
    27182 > select add #124
    27183 
    27184 564 atoms, 566 bonds, 72 residues, 2 models selected 
    27185 
    27186 > select subtract #122
    27187 
    27188 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27189 
    27190 > view matrix models
    27191 > #124,0.92546,-0.080234,-0.37025,107.03,0.09408,0.99537,0.019459,26.987,0.36698,-0.052841,0.92873,-48.381
    27192 
    27193 > view matrix models
    27194 > #124,0.92546,-0.080234,-0.37025,107.39,0.09408,0.99537,0.019459,27.064,0.36698,-0.052841,0.92873,-48.269
    27195 
    27196 > show #!115 models
    27197 
    27198 > hide #!115 models
    27199 
    27200 > select add #116
    27201 
    27202 1566 atoms, 1567 bonds, 1 pseudobond, 201 residues, 3 models selected 
    27203 
    27204 > select subtract #116
    27205 
    27206 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27207 
    27208 > select add #115
    27209 
    27210 564 atoms, 566 bonds, 72 residues, 2 models selected 
    27211 
    27212 > show #!115 models
    27213 
    27214 > select subtract #124
    27215 
    27216 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27217 
    27218 > view matrix models
    27219 > #115,0.92727,0.31203,0.20691,-95.353,-0.28838,0.9477,-0.13679,33.838,-0.23877,0.067168,0.96875,36.2
    27220 
    27221 > view matrix models
    27222 > #115,0.92727,0.31203,0.20691,-95.535,-0.28838,0.9477,-0.13679,33.067,-0.23877,0.067168,0.96875,36.01
    27223 
    27224 > view matrix models
    27225 > #115,0.92727,0.31203,0.20691,-95.507,-0.28838,0.9477,-0.13679,33.439,-0.23877,0.067168,0.96875,36.055
    27226 
    27227 > combine #15-18,115
    27228 
    27229 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    27230 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    27231 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    27232 Remapping chain ID '6' in copy of copy of pointy-1pf.pdb #115 to '0' 
    27233 
    27234 > select subtract #115
    27235 
    27236 Nothing selected 
    27237 
    27238 > hide #!115 models
    27239 
    27240 > hide #!116 models
    27241 
    27242 > color #125 #0096ffff
    27243 
    27244 > select add #122
    27245 
    27246 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27247 
    27248 > select add #119
    27249 
    27250 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27251 
    27252 > select subtract #122
    27253 
    27254 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27255 
    27256 > ui mousemode right "rotate selected models"
    27257 
    27258 > view matrix models
    27259 > #119,0.8901,-0.10474,-0.44357,135.86,0.09777,0.99446,-0.038631,-40.538,0.44515,-0.0089816,0.89541,-61.01
    27260 
    27261 > view matrix models
    27262 > #119,0.89191,-0.08955,-0.44326,132.53,0.080737,0.99598,-0.038758,-37.305,0.44495,-0.001219,0.89556,-62.478
    27263 
    27264 > select add #123
    27265 
    27266 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27267 
    27268 > select subtract #119
    27269 
    27270 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27271 
    27272 > view matrix models
    27273 > #123,0.92549,-0.012914,-0.37856,100.96,0.038441,0.99746,0.059952,56.562,0.37682,-0.070037,0.92363,-46.261
    27274 
    27275 > select clear
    27276 
    27277 > select add #124
    27278 
    27279 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27280 
    27281 > view matrix models
    27282 > #124,0.92777,-0.058108,-0.36859,102.88,0.071217,0.99722,0.022047,30.762,0.36629,-0.046705,0.92933,-49.284
    27283 
    27284 > select add #122
    27285 
    27286 564 atoms, 566 bonds, 72 residues, 2 models selected 
    27287 
    27288 > select subtract #124
    27289 
    27290 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27291 
    27292 > select subtract #122
    27293 
    27294 Nothing selected 
    27295 
    27296 > select add #119
    27297 
    27298 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27299 
    27300 > view matrix models
    27301 > #119,0.88903,-0.11848,-0.44225,138.43,0.11014,0.99292,-0.044584,-41.575,0.4444,-0.0090734,0.89578,-60.914
    27302 
    27303 > ui mousemode right "translate selected models"
    27304 
    27305 > view matrix models
    27306 > #119,0.88903,-0.11848,-0.44225,138.96,0.11014,0.99292,-0.044584,-43.532,0.4444,-0.0090734,0.89578,-60.784
    27307 
    27308 > view matrix models
    27309 > #119,0.88903,-0.11848,-0.44225,137.68,0.11014,0.99292,-0.044584,-41.245,0.4444,-0.0090734,0.89578,-61.113
    27310 
    27311 > ui mousemode right "rotate selected models"
    27312 
    27313 > view matrix models
    27314 > #119,0.89196,-0.08897,-0.44328,131.67,0.080148,0.99603,-0.038641,-36.887,0.44496,-0.0010616,0.89555,-62.708
    27315 
    27316 > view matrix models
    27317 > #119,0.89181,-0.090451,-0.44327,131.98,0.081974,0.9959,-0.038294,-37.307,0.44492,-0.0021859,0.89557,-62.489
    27318 
    27319 > select add #124
    27320 
    27321 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27322 
    27323 > select subtract #119
    27324 
    27325 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27326 
    27327 > view matrix models
    27328 > #124,0.92782,-0.051919,-0.36941,101.98,0.071293,0.99669,0.038979,27.663,0.36616,-0.062501,0.92845,-46.424
    27329 
    27330 > select subtract #124
    27331 
    27332 Nothing selected 
    27333 
    27334 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    27335 > MRCLaboratoryofMolecularBiology/Documents/Carter
    27336 > Lab/Diorge/Membranes/Fit14-22.cxs"
    27337 
    27338 Drag select of 8 postprocess_masked330_onepf.mrc , 414 residues, 4 pseudobonds 
    27339 Drag select of 8 postprocess_masked330_onepf.mrc , 214 residues 
    27340 Drag select of 8 postprocess_masked330_onepf.mrc , 337 residues, 2 pseudobonds 
    27341 Drag select of 8 postprocess_masked330_onepf.mrc , 359 residues, 4 pseudobonds 
    27342 Drag select of 8 postprocess_masked330_onepf.mrc , 376 residues, 4 pseudobonds 
    27343 
    27344 > select clear
    27345 
    27346 > select add #123
    27347 
    27348 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27349 
    27350 > ui mousemode right "translate selected models"
    27351 
    27352 > view matrix models
    27353 > #123,0.92549,-0.012914,-0.37856,99.838,0.038441,0.99746,0.059952,55.462,0.37682,-0.070037,0.92363,-46.487
    27354 
    27355 > view matrix models
    27356 > #123,0.92549,-0.012914,-0.37856,99.476,0.038441,0.99746,0.059952,55.326,0.37682,-0.070037,0.92363,-47.44
    27357 
    27358 > select add #121
    27359 
    27360 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27361 
    27362 > select subtract #123
    27363 
    27364 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27365 
    27366 > view matrix models
    27367 > #121,0.87369,-0.081045,-0.47969,142.58,0.055882,0.99622,-0.066535,0.25016,0.48326,0.031325,0.87491,-74.476
    27368 
    27369 > select clear
    27370 
    27371 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    27372 > MRCLaboratoryofMolecularBiology/Documents/Carter
    27373 > Lab/Diorge/Membranes/Fit14-22.cxs"
    27374 
    27375 > select clear
    27376 
    27377 > select add #124
    27378 
    27379 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27380 
    27381 > view matrix models
    27382 > #124,0.92782,-0.051919,-0.36941,102.21,0.071293,0.99669,0.038979,27.588,0.36616,-0.062501,0.92845,-46.929
    27383 
    27384 > select clear
    27385 
    27386 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    27387 > MRCLaboratoryofMolecularBiology/Documents/Carter
    27388 > Lab/Diorge/Membranes/Fit14-22.cxs"
    27389 
    27390 > hide #!8 models
    27391 
    27392 Drag select of 825 residues, 5 pseudobonds 
    27393 
    27394 > ui tool show "Color Zone"
    27395 
    27396 > show #!8 models
    27397 
    27398 > color zone #8 near sel distance 9.04
    27399 
    27400 > select clear
    27401 
    27402 > select #8
    27403 
    27404 2 models selected 
    27405 
    27406 > color #8.1 dark gray
    27407 
    27408 > transparency #8.1 50
    27409 
    27410 > select clear
    27411 
    27412 > select add #123
    27413 
    27414 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27415 
    27416 > select subtract #123
    27417 
    27418 Nothing selected 
    27419 
    27420 > select add #120
    27421 
    27422 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27423 
    27424 > view matrix models
    27425 > #120,0.92387,-0.081627,-0.37391,105.8,0.084114,0.99641,-0.0096927,56.633,0.37336,-0.022496,0.92742,-55.111
    27426 
    27427 > select clear
    27428 
    27429 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    27430 > MRCLaboratoryofMolecularBiology/Documents/Carter
    27431 > Lab/Diorge/Membranes/Fit14-22.cxs"
    27432 
    27433 > select add #121
    27434 
    27435 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27436 
    27437 > ui mousemode right "rotate selected models"
    27438 
    27439 > view matrix models
    27440 > #121,0.87299,-0.10805,-0.47561,147.04,0.083504,0.99387,-0.072516,-3.759,0.48053,0.02359,0.87666,-72.795
    27441 
    27442 > ui mousemode right "translate selected models"
    27443 
    27444 > view matrix models
    27445 > #121,0.87299,-0.10805,-0.47561,147.6,0.083504,0.99387,-0.072516,-4.1159,0.48053,0.02359,0.87666,-72.597
    27446 
    27447 > view matrix models
    27448 > #121,0.87299,-0.10805,-0.47561,146.54,0.083504,0.99387,-0.072516,-4.2049,0.48053,0.02359,0.87666,-72.807
    27449 
    27450 > view matrix models
    27451 > #121,0.87299,-0.10805,-0.47561,146.46,0.083504,0.99387,-0.072516,-4.5364,0.48053,0.02359,0.87666,-72.839
    27452 
    27453 > view matrix models
    27454 > #121,0.87299,-0.10805,-0.47561,146.51,0.083504,0.99387,-0.072516,-4.8739,0.48053,0.02359,0.87666,-72.815
    27455 
    27456 > view matrix models
    27457 > #121,0.87299,-0.10805,-0.47561,146.64,0.083504,0.99387,-0.072516,-4.9295,0.48053,0.02359,0.87666,-72.784
    27458 
    27459 > select clear
    27460 
    27461 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    27462 > MRCLaboratoryofMolecularBiology/Documents/Carter
    27463 > Lab/Diorge/Membranes/Fit14-22.cxs"
    27464 
    27465 > select add #125
    27466 
    27467 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    27468 
    27469 > select subtract #125
    27470 
    27471 Nothing selected 
    27472 
    27473 > select add #125
    27474 
    27475 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    27476 
    27477 > select subtract #125
    27478 
    27479 Nothing selected 
    27480 
    27481 > show #!116 models
    27482 
    27483 > hide #!116 models
    27484 
    27485 > show #!115 models
    27486 
    27487 > select add #115
    27488 
    27489 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27490 
    27491 > view matrix models
    27492 > #115,0.92727,0.31203,0.20691,-95.167,-0.28838,0.9477,-0.13679,34.62,-0.23877,0.067168,0.96875,36.188
    27493 
    27494 > select subtract #115
    27495 
    27496 Nothing selected 
    27497 
    27498 > show #!116 models
    27499 
    27500 > combine #15-18,115
    27501 
    27502 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    27503 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    27504 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    27505 Remapping chain ID '6' in copy of copy of pointy-1pf.pdb #115 to '0' 
    27506 
    27507 > hide #!115 models
    27508 
    27509 > hide #!116 models
    27510 
    27511 > show #!116 models
    27512 
    27513 > hide #!125 models
    27514 
    27515 > show #!125 models
    27516 
    27517 > hide #!116 models
    27518 
    27519 > show #!116 models
    27520 
    27521 > hide #!116 models
    27522 
    27523 > show #!116 models
    27524 
    27525 > hide #!116 models
    27526 
    27527 > hide #!126 models
    27528 
    27529 > show #!126 models
    27530 
    27531 > hide #!125 models
    27532 
    27533 > color #126 #0433ffff
    27534 
    27535 > color #126 #73fdffff
    27536 
    27537 > select add #121
    27538 
    27539 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27540 
    27541 > select add #120
    27542 
    27543 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    27544 
    27545 > select subtract #120
    27546 
    27547 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27548 
    27549 > select add #119
    27550 
    27551 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    27552 
    27553 > view matrix models
    27554 > #119,0.89181,-0.090451,-0.44327,129.1,0.081974,0.9959,-0.038294,-36.844,0.44492,-0.0021859,0.89557,-63.207,#121,0.87299,-0.10805,-0.47561,143.77,0.083504,0.99387,-0.072516,-4.4672,0.48053,0.02359,0.87666,-73.501
    27555 
    27556 > ui mousemode right "rotate selected models"
    27557 
    27558 > view matrix models
    27559 > #119,0.8949,-0.044758,-0.44401,119.32,0.035898,0.99895,-0.028347,-29.958,0.44482,0.0094288,0.89557,-65.55,#121,0.8762,-0.062417,-0.4779,135.44,0.037875,0.99743,-0.060831,1.8313,0.48047,0.0352,0.87631,-75.486
    27560 
    27561 > ui mousemode right "translate selected models"
    27562 
    27563 > view matrix models
    27564 > #119,0.8949,-0.044758,-0.44401,119.68,0.035898,0.99895,-0.028347,-29.609,0.44482,0.0094288,0.89557,-65.453,#121,0.8762,-0.062417,-0.4779,135.8,0.037875,0.99743,-0.060831,2.1796,0.48047,0.0352,0.87631,-75.389
    27565 
    27566 > select subtract #119
    27567 
    27568 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27569 
    27570 > view matrix models
    27571 > #121,0.8762,-0.062417,-0.4779,135.6,0.037875,0.99743,-0.060831,2.2551,0.48047,0.0352,0.87631,-74.477
    27572 
    27573 > view matrix models
    27574 > #121,0.8762,-0.062417,-0.4779,135.73,0.037875,0.99743,-0.060831,2.2735,0.48047,0.0352,0.87631,-74.788
    27575 
    27576 > select add #122
    27577 
    27578 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27579 
    27580 > select subtract #121
    27581 
    27582 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27583 
    27584 > select add #119
    27585 
    27586 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27587 
    27588 > select subtract #122
    27589 
    27590 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27591 
    27592 > view matrix models
    27593 > #119,0.8949,-0.044758,-0.44401,119.71,0.035898,0.99895,-0.028347,-29.488,0.44482,0.0094288,0.89557,-66.481
    27594 
    27595 > volume #8 level 0.007923
    27596 
    27597 > select add #120
    27598 
    27599 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    27600 
    27601 > select subtract #119
    27602 
    27603 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27604 
    27605 > select subtract #120
    27606 
    27607 Nothing selected 
    27608 
    27609 > select add #123
    27610 
    27611 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27612 
    27613 > view matrix models
    27614 > #123,0.92549,-0.012914,-0.37856,100.69,0.038441,0.99746,0.059952,55.009,0.37682,-0.070037,0.92363,-47.169
    27615 
    27616 > show #!115 models
    27617 
    27618 > hide #!115 models
    27619 
    27620 > show #!105 models
    27621 
    27622 > hide #!105 models
    27623 
    27624 > select add #119
    27625 
    27626 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27627 
    27628 > select subtract #123
    27629 
    27630 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27631 
    27632 > select add #121
    27633 
    27634 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    27635 
    27636 > view matrix models
    27637 > #119,0.8949,-0.044758,-0.44401,120.86,0.035898,0.99895,-0.028347,-30.58,0.44482,0.0094288,0.89557,-66.263,#121,0.8762,-0.062417,-0.4779,136.87,0.037875,0.99743,-0.060831,1.1815,0.48047,0.0352,0.87631,-74.57
    27638 
    27639 > view matrix models
    27640 > #119,0.8949,-0.044758,-0.44401,121.36,0.035898,0.99895,-0.028347,-30.596,0.44482,0.0094288,0.89557,-66.061,#121,0.8762,-0.062417,-0.4779,137.38,0.037875,0.99743,-0.060831,1.1648,0.48047,0.0352,0.87631,-74.368
    27641 
    27642 > select add #123
    27643 
    27644 2286 atoms, 2285 bonds, 2 pseudobonds, 294 residues, 5 models selected 
    27645 
    27646 > select subtract #121
    27647 
    27648 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27649 
    27650 > select subtract #119
    27651 
    27652 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27653 
    27654 > ui mousemode right "rotate selected models"
    27655 
    27656 > view matrix models
    27657 > #123,0.92104,-0.059003,-0.38496,110.55,0.084613,0.99516,0.049915,48.201,0.38015,-0.078546,0.92158,-46
    27658 
    27659 > view matrix models
    27660 > #123,0.91194,-0.068577,-0.40455,117.63,0.12514,0.98545,0.11503,29.677,0.39078,-0.15553,0.90725,-32.389
    27661 
    27662 > select add #124
    27663 
    27664 564 atoms, 566 bonds, 72 residues, 2 models selected 
    27665 
    27666 > select subtract #123
    27667 
    27668 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27669 
    27670 > view matrix models
    27671 > #124,0.94022,-0.046567,-0.33738,92.864,0.069863,0.99591,0.057236,24.581,0.33333,-0.077385,0.93963,-40.053
    27672 
    27673 > view matrix models
    27674 > #124,0.87002,-0.039375,-0.49145,134.31,0.099563,0.9903,0.096914,12.257,0.48287,-0.13325,0.8655,-46.116
    27675 
    27676 > view matrix models
    27677 > #124,0.91711,-0.033902,-0.39719,106.47,0.046804,0.99864,0.022833,35.098,0.39587,-0.03953,0.91745,-54.593
    27678 
    27679 > undo
    27680 
    27681 [Repeated 1 time(s)]
    27682 
    27683 > select add #126
    27684 
    27685 1566 atoms, 1567 bonds, 1 pseudobond, 201 residues, 3 models selected 
    27686 
    27687 > select subtract #124
    27688 
    27689 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    27690 
    27691 > view matrix models
    27692 > #126,0.93098,-0.0098259,-0.36495,90.44,0.031282,0.99811,0.052926,8.5109,0.36374,-0.060689,0.92952,-45.694
    27693 
    27694 > undo
    27695 
    27696 > select subtract #126
    27697 
    27698 Nothing selected 
    27699 
    27700 > show #!116 models
    27701 
    27702 > hide #!116 models
    27703 
    27704 > show #!115 models
    27705 
    27706 > select add #115
    27707 
    27708 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27709 
    27710 > view matrix models
    27711 > #115,0.92218,0.33214,0.19815,-97.622,-0.3168,0.94259,-0.10562,35.55,-0.22186,0.034621,0.97446,40.071
    27712 
    27713 > view matrix models
    27714 > #115,0.91431,0.35997,0.18562,-100.78,-0.35204,0.93296,-0.075181,39.108,-0.20024,0.0033923,0.97974,42.781
    27715 
    27716 > view matrix models
    27717 > #115,0.91434,0.35986,0.18572,-100.77,-0.35685,0.93279,-0.050579,35.411,-0.19144,-0.020027,0.9813,46.721
    27718 
    27719 > ui mousemode right "translate selected models"
    27720 
    27721 > view matrix models
    27722 > #115,0.91434,0.35986,0.18572,-100.57,-0.35685,0.93279,-0.050579,35.554,-0.19144,-0.020027,0.9813,46.195
    27723 
    27724 > select add #124
    27725 
    27726 564 atoms, 566 bonds, 72 residues, 2 models selected 
    27727 
    27728 > select subtract #115
    27729 
    27730 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27731 
    27732 > view matrix models
    27733 > #124,0.94022,-0.046567,-0.33738,92.97,0.069863,0.99591,0.057236,25.003,0.33333,-0.077385,0.93963,-40.463
    27734 
    27735 > view matrix models
    27736 > #124,0.94022,-0.046567,-0.33738,92.903,0.069863,0.99591,0.057236,24.874,0.33333,-0.077385,0.93963,-40.235
    27737 
    27738 > ui mousemode right "rotate selected models"
    27739 
    27740 > view matrix models
    27741 > #124,0.94213,-0.041922,-0.33263,90.854,0.070585,0.99472,0.074555,21.69,0.32775,-0.093719,0.94011,-36.464
    27742 
    27743 > view matrix models
    27744 > #124,0.91777,-0.017004,-0.39674,103.44,0.038185,0.99823,0.045549,32.899,0.39527,-0.056953,0.9168,-51.587
    27745 
    27746 > ui mousemode right "translate selected models"
    27747 
    27748 > view matrix models
    27749 > #124,0.91777,-0.017004,-0.39674,102.99,0.038185,0.99823,0.045549,31.723,0.39527,-0.056953,0.9168,-50.83
    27750 
    27751 > view matrix models
    27752 > #124,0.91777,-0.017004,-0.39674,103.51,0.038185,0.99823,0.045549,32.046,0.39527,-0.056953,0.9168,-50.866
    27753 
    27754 > select add #123
    27755 
    27756 564 atoms, 566 bonds, 72 residues, 2 models selected 
    27757 
    27758 > select subtract #124
    27759 
    27760 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27761 
    27762 > ui mousemode right "rotate selected models"
    27763 
    27764 > view matrix models
    27765 > #123,0.91066,-0.075486,-0.4062,119.36,0.12474,0.98752,0.096146,32.943,0.39388,-0.13823,0.90871,-36.197
    27766 
    27767 > combine #15-18,115
    27768 
    27769 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    27770 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    27771 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    27772 Remapping chain ID '6' in copy of copy of pointy-1pf.pdb #115 to '0' 
    27773 
    27774 > hide #!115 models
    27775 
    27776 > hide #!126 models
    27777 
    27778 > close #125-126
    27779 
    27780 > color #127 #00fa92ff
    27781 
    27782 > select add #121
    27783 
    27784 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27785 
    27786 > select subtract #121
    27787 
    27788 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27789 
    27790 > select add #117
    27791 
    27792 564 atoms, 566 bonds, 72 residues, 2 models selected 
    27793 
    27794 > select subtract #123
    27795 
    27796 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27797 
    27798 > view matrix models
    27799 > #117,0.91729,-0.00669,-0.39815,97.653,0.033935,0.99753,0.061422,-17.902,0.39676,-0.069853,0.91526,-49.01
    27800 
    27801 > ui mousemode right "translate selected models"
    27802 
    27803 > view matrix models
    27804 > #117,0.91729,-0.00669,-0.39815,97.472,0.033935,0.99753,0.061422,-18.153,0.39676,-0.069853,0.91526,-48.362
    27805 
    27806 > select subtract #117
    27807 
    27808 Nothing selected 
    27809 
    27810 > select add #122
    27811 
    27812 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27813 
    27814 > ui mousemode right "rotate selected models"
    27815 
    27816 > view matrix models
    27817 > #122,0.90875,0.00045019,-0.41735,101.35,0.032501,0.99689,0.071844,-41.984,0.41608,-0.078853,0.9059,-48.166
    27818 
    27819 > select subtract #122
    27820 
    27821 Nothing selected 
    27822 
    27823 > show #!115 models
    27824 
    27825 > hide #!115 models
    27826 
    27827 > show #!105 models
    27828 
    27829 > hide #!105 models
    27830 
    27831 > select add #121
    27832 
    27833 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27834 
    27835 > view matrix models
    27836 > #121,0.89889,0.012427,-0.438,110.35,0.043345,0.99217,0.11711,-35.095,0.43603,-0.12425,0.89131,-37.897
    27837 
    27838 > view matrix models
    27839 > #121,0.89767,-0.023967,-0.44002,117.95,0.063498,0.99513,0.075335,-31.314,0.43608,-0.095566,0.89482,-44.086
    27840 
    27841 > ui mousemode right "translate selected models"
    27842 
    27843 > view matrix models
    27844 > #121,0.89767,-0.023967,-0.44002,118.67,0.063498,0.99513,0.075335,-30.069,0.43608,-0.095566,0.89482,-46.27
    27845 
    27846 > view matrix models
    27847 > #121,0.89767,-0.023967,-0.44002,119.6,0.063498,0.99513,0.075335,-29.951,0.43608,-0.095566,0.89482,-45.795
    27848 
    27849 > ui mousemode right "rotate selected models"
    27850 
    27851 > view matrix models
    27852 > #121,0.89445,-0.062965,-0.4427,128.24,0.096433,0.9939,0.053474,-32.039,0.43664,-0.090522,0.89507,-46.922
    27853 
    27854 > ui mousemode right "translate selected models"
    27855 
    27856 > view matrix models
    27857 > #121,0.89445,-0.062965,-0.4427,126.63,0.096433,0.9939,0.053474,-32.049,0.43664,-0.090522,0.89507,-47.285
    27858 
    27859 > ui mousemode right "rotate selected models"
    27860 
    27861 > view matrix models
    27862 > #121,0.89614,-0.058446,-0.43991,124.86,0.077744,0.99664,0.02596,-23.144,0.43691,-0.057464,0.89767,-54.17
    27863 
    27864 > view matrix models
    27865 > #121,0.92861,-0.057477,-0.36659,103.11,0.052178,0.99834,-0.024357,-7.9996,0.36738,0.0034897,0.93006,-58.089
    27866 
    27867 > view matrix models
    27868 > #121,0.91814,-0.082705,-0.38752,114.32,-0.01244,0.97148,-0.23681,53.538,0.39605,0.22224,0.89093,-97.726
    27869 
    27870 > view matrix models
    27871 > #121,0.87635,-0.13011,-0.46378,147.43,0.034912,0.97745,-0.20825,36.875,0.48041,0.16631,0.86113,-98.336
    27872 
    27873 > view matrix models
    27874 > #121,0.88329,-0.11319,-0.45495,140.98,0.047816,0.98711,-0.15276,21.116,0.46638,0.11318,0.87732,-88.614
    27875 
    27876 > ui mousemode right "translate selected models"
    27877 
    27878 > view matrix models
    27879 > #121,0.88329,-0.11319,-0.45495,139.97,0.047816,0.98711,-0.15276,20.11,0.46638,0.11318,0.87732,-85.783
    27880 
    27881 > view matrix models
    27882 > #121,0.88329,-0.11319,-0.45495,141.39,0.047816,0.98711,-0.15276,20.917,0.46638,0.11318,0.87732,-86.485
    27883 
    27884 > view matrix models
    27885 > #121,0.88329,-0.11319,-0.45495,140.66,0.047816,0.98711,-0.15276,22.078,0.46638,0.11318,0.87732,-86.54
    27886 
    27887 > ui mousemode right "rotate selected models"
    27888 
    27889 > view matrix models
    27890 > #121,0.88408,-0.089957,-0.45859,136.81,0.027969,0.98972,-0.14022,23.109,0.46649,0.11114,0.87751,-86.216
    27891 
    27892 > ui mousemode right "translate selected models"
    27893 
    27894 > view matrix models
    27895 > #121,0.88408,-0.089957,-0.45859,138.31,0.027969,0.98972,-0.14022,21.715,0.46649,0.11114,0.87751,-86.196
    27896 
    27897 > view matrix models
    27898 > #121,0.88408,-0.089957,-0.45859,138.26,0.027969,0.98972,-0.14022,21.65,0.46649,0.11114,0.87751,-86.141
    27899 
    27900 > ui mousemode right "rotate selected models"
    27901 
    27902 > view matrix models
    27903 > #121,0.88802,-0.048413,-0.45725,129.26,0.021548,0.99773,-0.06379,5.9197,0.4593,0.046794,0.88705,-74.334
    27904 
    27905 > ui mousemode right "translate selected models"
    27906 
    27907 > view matrix models
    27908 > #121,0.88802,-0.048413,-0.45725,128.77,0.021548,0.99773,-0.06379,7.0849,0.4593,0.046794,0.88705,-73.919
    27909 
    27910 > ui mousemode right "rotate selected models"
    27911 
    27912 > view matrix models
    27913 > #121,0.88646,-0.035583,-0.46144,127.5,-0.046374,0.98519,-0.16506,43.99,0.46048,0.16772,0.87168,-94.091
    27914 
    27915 > view matrix models
    27916 > #121,0.86295,-0.056907,-0.50207,144.64,0.029489,0.99762,-0.062389,5.1914,0.50442,0.039033,0.86257,-76.736
    27917 
    27918 > view matrix models
    27919 > #121,0.88854,-0.04248,-0.45683,127.45,-0.012706,0.99304,-0.11706,25.83,0.45862,0.10981,0.88182,-84.731
    27920 
    27921 > view matrix models
    27922 > #121,0.88978,-0.10071,-0.44515,135.92,0.037356,0.98815,-0.1489,22.951,0.45487,0.11586,0.88299,-85.35
    27923 
    27924 > view matrix models
    27925 > #121,0.86878,-0.10464,-0.48401,148.87,0.031943,0.98723,-0.1561,25.699,0.49416,0.12015,0.86103,-89.777
    27926 
    27927 > ui mousemode right "translate selected models"
    27928 
    27929 > view matrix models
    27930 > #121,0.86878,-0.10464,-0.48401,147.98,0.031943,0.98723,-0.1561,25.404,0.49416,0.12015,0.86103,-89.668
    27931 
    27932 > ui mousemode right "rotate selected models"
    27933 
    27934 > view matrix models
    27935 > #121,0.86331,-0.11097,-0.49232,152,0.069643,0.99239,-0.10156,5.6019,0.49984,0.053389,0.86447,-78.808
    27936 
    27937 > view matrix models
    27938 > #121,0.8853,-0.087163,-0.45678,135.73,0.042486,0.99333,-0.1072,12.146,0.46307,0.075502,0.8831,-79.256
    27939 
    27940 > view matrix models
    27941 > #121,0.8833,-0.11119,-0.45543,140.45,0.080096,0.99298,-0.087079,0.4029,0.46192,0.040438,0.886,-72.924
    27942 
    27943 > ui mousemode right "translate selected models"
    27944 
    27945 > view matrix models
    27946 > #121,0.8833,-0.11119,-0.45543,139.69,0.080096,0.99298,-0.087079,-1.3014,0.46192,0.040438,0.886,-74.029
    27947 
    27948 > view matrix models
    27949 > #121,0.8833,-0.11119,-0.45543,139.77,0.080096,0.99298,-0.087079,-1.1626,0.46192,0.040438,0.886,-74.039
    27950 
    27951 > ui mousemode right "move picked models"
    27952 
    27953 > ui mousemode right "rotate selected models"
    27954 
    27955 > view matrix models
    27956 > #121,0.88544,-0.084378,-0.45702,134.54,0.055692,0.99556,-0.075906,1.0876,0.4614,0.041758,0.88621,-74.227
    27957 
    27958 > select add #123
    27959 
    27960 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27961 
    27962 > select subtract #121
    27963 
    27964 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27965 
    27966 > view matrix models
    27967 > #123,0.91361,-0.05461,-0.4029,114.63,0.10421,0.98929,0.10222,35.541,0.393,-0.13538,0.90952,-36.658
    27968 
    27969 > ui mousemode right "translate selected models"
    27970 
    27971 > view matrix models
    27972 > #123,0.91361,-0.05461,-0.4029,114.92,0.10421,0.98929,0.10222,36.709,0.393,-0.13538,0.90952,-36.547
    27973 
    27974 > select add #122
    27975 
    27976 564 atoms, 566 bonds, 72 residues, 2 models selected 
    27977 
    27978 > select subtract #122
    27979 
    27980 282 atoms, 283 bonds, 36 residues, 1 model selected 
    27981 
    27982 > select add #119
    27983 
    27984 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    27985 
    27986 > select subtract #123
    27987 
    27988 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    27989 
    27990 > view matrix models
    27991 > #119,0.8949,-0.044758,-0.44401,122.94,0.035898,0.99895,-0.028347,-30.555,0.44482,0.0094288,0.89557,-66.044
    27992 
    27993 > ui mousemode right "rotate selected models"
    27994 
    27995 > view matrix models
    27996 > #119,0.839,-0.049578,-0.54187,155.21,0.065711,0.99778,0.01045,-44.334,0.54015,-0.044374,0.8404,-64.16
    27997 
    27998 > view matrix models
    27999 > #119,0.83899,-0.11583,-0.53168,165.77,0.071402,0.99207,-0.10345,-21.279,0.53945,0.048834,0.8406,-81.824
    28000 
    28001 > ui mousemode right zoom
    28002 
    28003 > ui mousemode right "translate selected models"
    28004 
    28005 > view matrix models
    28006 > #119,0.83899,-0.11583,-0.53168,166.27,0.071402,0.99207,-0.10345,-20.559,0.53945,0.048834,0.8406,-81.628
    28007 
    28008 > ui mousemode right "rotate selected models"
    28009 
    28010 > view matrix models
    28011 > #119,0.83985,-0.07496,-0.53761,159.51,0.026332,0.99488,-0.09758,-13.033,0.54218,0.067796,0.83753,-85.179
    28012 
    28013 > view matrix models
    28014 > #119,0.83348,-0.127,-0.53775,170.76,0.080703,0.99077,-0.10891,-21.115,0.54662,0.047373,0.83604,-81.896
    28015 
    28016 > ui mousemode right "translate selected models"
    28017 
    28018 > view matrix models
    28019 > #119,0.83348,-0.127,-0.53775,170.4,0.080703,0.99077,-0.10891,-21.351,0.54662,0.047373,0.83604,-82.065
    28020 
    28021 > ui mousemode right "rotate selected models"
    28022 
    28023 > view matrix models
    28024 > #119,0.72918,-0.13718,-0.67043,220.7,0.038124,0.98632,-0.16035,-1.3123,0.68326,0.091361,0.72444,-95.844
    28025 
    28026 > view matrix models
    28027 > #119,0.81287,-0.12714,-0.5684,180.88,0.048912,0.98734,-0.1509,-5.6383,0.58039,0.094864,0.80879,-92.519
    28028 
    28029 > view matrix models
    28030 > #119,0.81375,-0.13377,-0.56562,181.4,0.061593,0.98752,-0.14494,-9.4879,0.57795,0.083109,0.81183,-90.394
    28031 
    28032 > select add #123
    28033 
    28034 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28035 
    28036 > select subtract #123
    28037 
    28038 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28039 
    28040 > select add #120
    28041 
    28042 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    28043 
    28044 > select subtract #119
    28045 
    28046 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28047 
    28048 > view matrix models
    28049 > #120,0.9231,-0.086863,-0.37462,107.1,0.089332,0.99594,-0.010807,55.876,0.37404,-0.02349,0.92711,-55.001
    28050 
    28051 > ui mousemode right "rotate selected models"
    28052 
    28053 > ui mousemode right "translate selected models"
    28054 
    28055 > view matrix models
    28056 > #120,0.9231,-0.086863,-0.37462,108.8,0.089332,0.99594,-0.010807,57.179,0.37404,-0.02349,0.92711,-54.497
    28057 
    28058 > view matrix models
    28059 > #120,0.9231,-0.086863,-0.37462,110.1,0.089332,0.99594,-0.010807,58,0.37404,-0.02349,0.92711,-54.051
    28060 
    28061 > view matrix models
    28062 > #120,0.9231,-0.086863,-0.37462,110.67,0.089332,0.99594,-0.010807,55.951,0.37404,-0.02349,0.92711,-53.945
    28063 
    28064 > select add #121
    28065 
    28066 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    28067 
    28068 > select subtract #120
    28069 
    28070 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28071 
    28072 > view matrix models
    28073 > #121,0.88544,-0.084378,-0.45702,134.87,0.055692,0.99556,-0.075906,2.0157,0.4614,0.041758,0.88621,-74
    28074 
    28075 > select add #122
    28076 
    28077 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28078 
    28079 > select subtract #121
    28080 
    28081 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28082 
    28083 > select subtract #122
    28084 
    28085 Nothing selected 
    28086 
    28087 > select add #119
    28088 
    28089 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28090 
    28091 > ui mousemode right "rotate selected models"
    28092 
    28093 > view matrix models
    28094 > #119,0.81422,-0.14339,-0.56258,182.52,0.06003,0.98462,-0.16407,-4.7294,0.57745,0.099818,0.8103,-93.166
    28095 
    28096 > ui mousemode right "translate selected models"
    28097 
    28098 > view matrix models
    28099 > #119,0.81422,-0.14339,-0.56258,182.4,0.06003,0.98462,-0.16407,-4.7258,0.57745,0.099818,0.8103,-92.79
    28100 
    28101 > select add #118
    28102 
    28103 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    28104 
    28105 > select subtract #118
    28106 
    28107 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28108 
    28109 > select subtract #119
    28110 
    28111 Nothing selected 
    28112 
    28113 > select add #124
    28114 
    28115 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28116 
    28117 > ui mousemode right "rotate selected models"
    28118 
    28119 > view matrix models
    28120 > #124,0.91794,-0.0081059,-0.39665,101.95,0.038646,0.99686,0.069064,27.781,0.39484,-0.078725,0.91537,-46.834
    28121 
    28122 > select add #120
    28123 
    28124 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28125 
    28126 > select add #119
    28127 
    28128 2286 atoms, 2285 bonds, 2 pseudobonds, 294 residues, 5 models selected 
    28129 
    28130 > select subtract #119
    28131 
    28132 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28133 
    28134 > select subtract #120
    28135 
    28136 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28137 
    28138 > select subtract #124
    28139 
    28140 Nothing selected 
    28141 
    28142 > select add #120
    28143 
    28144 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28145 
    28146 > view matrix models
    28147 > #120,0.95689,-0.10419,-0.27113,86.014,0.09717,0.99449,-0.039222,60.389,0.27372,0.011186,0.96174,-46.986
    28148 
    28149 > view matrix models
    28150 > #120,0.94496,-0.079262,-0.31743,93.114,0.073446,0.99684,-0.030267,62.995,0.31882,0.0052875,0.9478,-52.292
    28151 
    28152 > undo
    28153 
    28154 > view matrix models
    28155 > #120,0.92633,-0.065721,-0.37094,105.23,0.061648,0.99784,-0.02284,63.719,0.37164,-0.0017109,0.92838,-57.859
    28156 
    28157 > ui mousemode right "translate selected models"
    28158 
    28159 > view matrix models
    28160 > #120,0.92633,-0.065721,-0.37094,105.62,0.061648,0.99784,-0.02284,64.88,0.37164,-0.0017109,0.92838,-57.769
    28161 
    28162 > view matrix models
    28163 > #120,0.92633,-0.065721,-0.37094,104.55,0.061648,0.99784,-0.02284,63.832,0.37164,-0.0017109,0.92838,-55.601
    28164 
    28165 > volume #8 level 0.01214
    28166 
    28167 > ui mousemode right "rotate selected models"
    28168 
    28169 > view matrix models
    28170 > #120,0.91258,-0.070384,-0.4028,114.73,0.068723,0.99746,-0.018595,61.588,0.40308,-0.010712,0.9151,-57.646
    28171 
    28172 > select add #122
    28173 
    28174 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28175 
    28176 > select subtract #122
    28177 
    28178 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28179 
    28180 > select subtract #120
    28181 
    28182 Nothing selected 
    28183 
    28184 > select add #119
    28185 
    28186 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28187 
    28188 > view matrix models
    28189 > #119,0.81339,-0.13712,-0.56533,181.93,0.053278,0.9853,-0.16232,-3.8245,0.57927,0.10191,0.80874,-93.246
    28190 
    28191 > undo
    28192 
    28193 > ui mousemode right "translate selected models"
    28194 
    28195 > view matrix models
    28196 > #119,0.81422,-0.14339,-0.56258,181.58,0.06003,0.98462,-0.16407,-4.2519,0.57745,0.099818,0.8103,-90.599
    28197 
    28198 > ui mousemode right "rotate selected models"
    28199 
    28200 > view matrix models
    28201 > #119,0.81811,-0.12992,-0.5602,177.74,0.067954,0.98916,-0.13016,-13.632,0.57104,0.068415,0.81807,-84.874
    28202 
    28203 > ui mousemode right "translate selected models"
    28204 
    28205 > view matrix models
    28206 > #119,0.81811,-0.12992,-0.5602,178.05,0.067954,0.98916,-0.13016,-13.354,0.57104,0.068415,0.81807,-85.534
    28207 
    28208 > select add #123
    28209 
    28210 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28211 
    28212 > select add #121
    28213 
    28214 2286 atoms, 2285 bonds, 2 pseudobonds, 294 residues, 5 models selected 
    28215 
    28216 > select subtract #119
    28217 
    28218 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28219 
    28220 > view matrix models
    28221 > #121,0.88544,-0.084378,-0.45702,134.78,0.055692,0.99556,-0.075906,3.6556,0.4614,0.041758,0.88621,-73.791,#123,0.91361,-0.05461,-0.4029,114.83,0.10421,0.98929,0.10222,38.349,0.393,-0.13538,0.90952,-36.338
    28222 
    28223 > ui mousemode right "rotate selected models"
    28224 
    28225 > view matrix models
    28226 > #121,0.88894,-0.049699,-0.45531,126.38,0.023099,0.9977,-0.063803,7.4999,0.45743,0.0462,0.88804,-74.28,#123,0.91846,-0.020977,-0.39496,107.81,0.070906,0.99115,0.11225,42.703,0.3891,-0.1311,0.91182,-36.593
    28227 
    28228 > ui mousemode right "translate selected models"
    28229 
    28230 > view matrix models
    28231 > #121,0.88894,-0.049699,-0.45531,127.25,0.023099,0.9977,-0.063803,7.8354,0.45743,0.0462,0.88804,-74.13,#123,0.91846,-0.020977,-0.39496,108.69,0.070906,0.99115,0.11225,43.039,0.3891,-0.1311,0.91182,-36.443
    28232 
    28233 > view matrix models
    28234 > #121,0.88894,-0.049699,-0.45531,127.87,0.023099,0.9977,-0.063803,8.2995,0.45743,0.0462,0.88804,-74.686,#123,0.91846,-0.020977,-0.39496,109.31,0.070906,0.99115,0.11225,43.503,0.3891,-0.1311,0.91182,-36.999
    28235 
    28236 > select add #120
    28237 
    28238 2286 atoms, 2285 bonds, 2 pseudobonds, 294 residues, 5 models selected 
    28239 
    28240 > select subtract #120
    28241 
    28242 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28243 
    28244 > select subtract #121
    28245 
    28246 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28247 
    28248 > view matrix models
    28249 > #123,0.91846,-0.020977,-0.39496,109.03,0.070906,0.99115,0.11225,42.402,0.3891,-0.1311,0.91182,-37.165
    28250 
    28251 > ui mousemode right "rotate selected models"
    28252 
    28253 > view matrix models
    28254 > #123,0.90591,-0.049207,-0.42061,121.08,0.077971,0.99563,0.051456,51.645,0.41624,-0.079409,0.90578,-50.107
    28255 
    28256 > ui mousemode right "translate selected models"
    28257 
    28258 > view matrix models
    28259 > #123,0.90591,-0.049207,-0.42061,120.65,0.077971,0.99563,0.051456,51.711,0.41624,-0.079409,0.90578,-49.372
    28260 
    28261 > view matrix models
    28262 > #123,0.90591,-0.049207,-0.42061,119.08,0.077971,0.99563,0.051456,52.641,0.41624,-0.079409,0.90578,-49.305
    28263 
    28264 > view matrix models
    28265 > #123,0.90591,-0.049207,-0.42061,119.4,0.077971,0.99563,0.051456,52.368,0.41624,-0.079409,0.90578,-48.565
    28266 
    28267 > ui mousemode right "rotate selected models"
    28268 
    28269 > view matrix models
    28270 > #123,0.90506,-0.05049,-0.42228,120.1,0.065139,0.99767,0.020323,60.378,0.42027,-0.045901,0.90624,-55.108
    28271 
    28272 > select add #121
    28273 
    28274 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28275 
    28276 > select subtract #123
    28277 
    28278 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28279 
    28280 > view matrix models
    28281 > #121,0.88724,-0.045824,-0.45903,128.24,0.03359,0.99883,-0.034786,0.035567,0.46009,0.015444,0.88774,-69.307
    28282 
    28283 > view matrix models
    28284 > #121,0.88716,-0.050461,-0.45869,129.07,0.045602,0.99872,-0.02167,-5.0748,0.4592,-0.001693,0.88833,-65.979
    28285 
    28286 > select add #122
    28287 
    28288 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28289 
    28290 > select subtract #122
    28291 
    28292 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28293 
    28294 > select subtract #121
    28295 
    28296 Nothing selected 
    28297 
    28298 > select add #119
    28299 
    28300 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28301 
    28302 > view matrix models
    28303 > #119,0.86608,-0.1254,-0.48392,151.84,0.070863,0.98905,-0.12947,-14.07,0.49485,0.077839,0.86548,-81.316
    28304 
    28305 > view matrix models
    28306 > #119,0.86723,-0.11817,-0.48369,150.18,0.075002,0.99135,-0.10771,-19.777,0.49223,0.057133,0.86859,-77.461
    28307 
    28308 > ui mousemode right "translate selected models"
    28309 
    28310 > view matrix models
    28311 > #119,0.86723,-0.11817,-0.48369,149.13,0.075002,0.99135,-0.10771,-19.922,0.49223,0.057133,0.86859,-77.878
    28312 
    28313 > ui mousemode right "rotate selected models"
    28314 
    28315 > view matrix models
    28316 > #119,0.86854,-0.094755,-0.48647,144.96,0.079982,0.99549,-0.051102,-33.23,0.48912,0.0054759,0.8722,-68.126
    28317 
    28318 > view matrix models
    28319 > #119,0.87323,-0.095361,-0.47789,142.37,0.079504,0.99541,-0.053355,-32.659,0.48078,0.008597,0.8768,-67.943
    28320 
    28321 > ui mousemode right "translate selected models"
    28322 
    28323 > view matrix models
    28324 > #119,0.87323,-0.095361,-0.47789,142.5,0.079504,0.99541,-0.053355,-32.539,0.48078,0.008597,0.8768,-68.567
    28325 
    28326 > view matrix models
    28327 > #119,0.87323,-0.095361,-0.47789,143.67,0.079504,0.99541,-0.053355,-32.52,0.48078,0.008597,0.8768,-68.117
    28328 
    28329 > select add #124
    28330 
    28331 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28332 
    28333 > select subtract #119
    28334 
    28335 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28336 
    28337 > view matrix models
    28338 > #124,0.91794,-0.0081059,-0.39665,102.07,0.038646,0.99686,0.069064,28.808,0.39484,-0.078725,0.91537,-46.941
    28339 
    28340 > view matrix models
    28341 > #124,0.91794,-0.0081059,-0.39665,102,0.038646,0.99686,0.069064,28.784,0.39484,-0.078725,0.91537,-46.569
    28342 
    28343 > select clear
    28344 
    28345 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    28346 > MRCLaboratoryofMolecularBiology/Documents/Carter
    28347 > Lab/Diorge/Membranes/Fit14-23.cxs"
    28348 
    28349 > select add #122
    28350 
    28351 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28352 
    28353 > select add #119
    28354 
    28355 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28356 
    28357 > select subtract #122
    28358 
    28359 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28360 
    28361 > view matrix models
    28362 > #119,0.87323,-0.095361,-0.47789,143.88,0.079504,0.99541,-0.053355,-34.936,0.48078,0.008597,0.8768,-68.11
    28363 
    28364 > view matrix models
    28365 > #119,0.87323,-0.095361,-0.47789,144.85,0.079504,0.99541,-0.053355,-34.987,0.48078,0.008597,0.8768,-67.669
    28366 
    28367 > ui mousemode right "rotate selected models"
    28368 
    28369 > view matrix models
    28370 > #119,0.87223,-0.064318,-0.48484,140.55,0.045551,0.99769,-0.050404,-29.049,0.48697,0.021879,0.87315,-70.729
    28371 
    28372 > select add #118
    28373 
    28374 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    28375 
    28376 > select subtract #119
    28377 
    28378 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28379 
    28380 > select add #124
    28381 
    28382 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28383 
    28384 > select subtract #118
    28385 
    28386 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28387 
    28388 > ui mousemode right "translate selected models"
    28389 
    28390 > view matrix models
    28391 > #124,0.91794,-0.0081059,-0.39665,102.19,0.038646,0.99686,0.069064,27.9,0.39484,-0.078725,0.91537,-46.52
    28392 
    28393 > select add #122
    28394 
    28395 564 atoms, 566 bonds, 72 residues, 2 models selected 
    28396 
    28397 > select add #123
    28398 
    28399 846 atoms, 849 bonds, 108 residues, 3 models selected 
    28400 
    28401 > select subtract #122
    28402 
    28403 564 atoms, 566 bonds, 72 residues, 2 models selected 
    28404 
    28405 > select subtract #123
    28406 
    28407 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28408 
    28409 > select subtract #124
    28410 
    28411 Nothing selected 
    28412 
    28413 > select add #119
    28414 
    28415 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28416 
    28417 > ui mousemode right "rotate selected models"
    28418 
    28419 > view matrix models
    28420 > #119,0.86832,-0.11278,-0.48302,150.22,0.089611,0.99345,-0.070861,-33.134,0.48785,0.018246,0.87274,-70.135
    28421 
    28422 > ui mousemode right "translate selected models"
    28423 
    28424 > view matrix models
    28425 > #119,0.86832,-0.11278,-0.48302,150.55,0.089611,0.99345,-0.070861,-31.671,0.48785,0.018246,0.87274,-69.991
    28426 
    28427 > ui mousemode right "rotate selected models"
    28428 
    28429 > view matrix models
    28430 > #119,0.87151,-0.069317,-0.48545,142.1,0.043422,0.99698,-0.064404,-24.169,0.48845,0.03505,0.87189,-73.145
    28431 
    28432 > ui mousemode right "translate selected models"
    28433 
    28434 > view matrix models
    28435 > #119,0.87151,-0.069317,-0.48545,141.82,0.043422,0.99698,-0.064404,-23.927,0.48845,0.03505,0.87189,-73.248
    28436 
    28437 > ui mousemode right "rotate selected models"
    28438 
    28439 > view matrix models
    28440 > #119,0.8695,-0.10739,-0.48212,148.82,0.087776,0.99414,-0.063135,-32.751,0.48607,0.012577,0.87383,-68.87
    28441 
    28442 > ui mousemode right "translate selected models"
    28443 
    28444 [Repeated 1 time(s)]
    28445 
    28446 > view matrix models
    28447 > #119,0.8695,-0.10739,-0.48212,147.46,0.087776,0.99414,-0.063135,-34.321,0.48607,0.012577,0.87383,-69.632
    28448 
    28449 > select clear
    28450 
    28451 > select add #120
    28452 
    28453 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28454 
    28455 > ui mousemode right "translate selected models"
    28456 
    28457 > view matrix models
    28458 > #120,0.91258,-0.070384,-0.4028,114.1,0.068723,0.99746,-0.018595,61.64,0.40308,-0.010712,0.9151,-58.767
    28459 
    28460 > view matrix models
    28461 > #120,0.91258,-0.070384,-0.4028,114.76,0.068723,0.99746,-0.018595,62.129,0.40308,-0.010712,0.9151,-58.577
    28462 
    28463 > select clear
    28464 
    28465 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    28466 > MRCLaboratoryofMolecularBiology/Documents/Carter
    28467 > Lab/Diorge/Membranes/Fit14-24.cxs"
    28468 
    28469 > ui windowfill toggle
    28470 
    28471 [Repeated 1 time(s)]
    28472 
    28473 > select add #123
    28474 
    28475 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28476 
    28477 > ui mousemode right "rotate selected models"
    28478 
    28479 > view matrix models
    28480 > #123,0.90704,-0.024556,-0.42033,114.96,0.063743,0.9948,0.079436,50.063,0.4162,-0.098845,0.90389,-44.915
    28481 
    28482 > ui windowfill toggle
    28483 
    28484 > view matrix models
    28485 > #123,0.90272,-0.020471,-0.42975,116.88,0.063028,0.99438,0.085027,49.226,0.42559,-0.10384,0.89894,-44.991
    28486 
    28487 > ui mousemode right zoom
    28488 
    28489 > ui windowfill toggle
    28490 
    28491 > select add #122
    28492 
    28493 564 atoms, 566 bonds, 72 residues, 2 models selected 
    28494 
    28495 > select subtract #122
    28496 
    28497 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28498 
    28499 > select subtract #123
    28500 
    28501 Nothing selected 
    28502 
    28503 > select add #119
    28504 
    28505 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28506 
    28507 > ui mousemode right "translate selected models"
    28508 
    28509 > view matrix models
    28510 > #119,0.8695,-0.10739,-0.48212,148.78,0.087776,0.99414,-0.063135,-35.809,0.48607,0.012577,0.87383,-68.79
    28511 
    28512 > ui mousemode right "rotate selected models"
    28513 
    28514 > view matrix models
    28515 > #119,0.86998,-0.07559,-0.48727,143.66,0.051918,0.99673,-0.061928,-29.185,0.49035,0.028578,0.87105,-72.156
    28516 
    28517 > ui mousemode right "translate selected models"
    28518 
    28519 > view matrix models
    28520 > #119,0.86998,-0.07559,-0.48727,143.01,0.051918,0.99673,-0.061928,-28.473,0.49035,0.028578,0.87105,-72.57
    28521 
    28522 > ui mousemode right "rotate selected models"
    28523 
    28524 > view matrix models
    28525 > #119,0.86857,-0.028892,-0.49473,135.91,-0.00084377,0.99821,-0.059776,-18.358,0.49557,0.052337,0.86699,-77.344
    28526 
    28527 > ui mousemode right "translate selected models"
    28528 
    28529 > view matrix models
    28530 > #119,0.86857,-0.028892,-0.49473,136.31,-0.00084377,0.99821,-0.059776,-17.501,0.49557,0.052337,0.86699,-77.241
    28531 
    28532 > select add #121
    28533 
    28534 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    28535 
    28536 > select subtract #119
    28537 
    28538 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28539 
    28540 > view matrix models
    28541 > #121,0.88716,-0.050461,-0.45869,130.45,0.045602,0.99872,-0.02167,-8.2246,0.4592,-0.001693,0.88833,-65.591
    28542 
    28543 > view matrix models
    28544 > #121,0.88716,-0.050461,-0.45869,131.66,0.045602,0.99872,-0.02167,-8.194,0.4592,-0.001693,0.88833,-65.078
    28545 
    28546 > select add #124
    28547 
    28548 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28549 
    28550 > select subtract #121
    28551 
    28552 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28553 
    28554 > view matrix models
    28555 > #124,0.91794,-0.0081059,-0.39665,103.02,0.038646,0.99686,0.069064,30.586,0.39484,-0.078725,0.91537,-46.181
    28556 
    28557 > view matrix models
    28558 > #124,0.91794,-0.0081059,-0.39665,102.88,0.038646,0.99686,0.069064,30.209,0.39484,-0.078725,0.91537,-46.187
    28559 
    28560 > ui mousemode right "rotate selected models"
    28561 
    28562 > view matrix models
    28563 > #124,0.91337,-0.063878,-0.40209,114.22,0.098036,0.99306,0.06493,19.951,0.39515,-0.098725,0.91329,-42.478
    28564 
    28565 > select add #123
    28566 
    28567 564 atoms, 566 bonds, 72 residues, 2 models selected 
    28568 
    28569 > select subtract #124
    28570 
    28571 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28572 
    28573 > view matrix models
    28574 > #123,0.89919,-0.081655,-0.42988,127.94,0.12442,0.98959,0.072282,40.355,0.4195,-0.11848,0.89999,-41.516
    28575 
    28576 > select add #122
    28577 
    28578 564 atoms, 566 bonds, 72 residues, 2 models selected 
    28579 
    28580 > select subtract #122
    28581 
    28582 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28583 
    28584 > select subtract #123
    28585 
    28586 Nothing selected 
    28587 
    28588 > select add #119
    28589 
    28590 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28591 
    28592 > ui mousemode right "translate selected models"
    28593 
    28594 > view matrix models
    28595 > #119,0.86857,-0.028892,-0.49473,137.03,-0.00084377,0.99821,-0.059776,-16.436,0.49557,0.052337,0.86699,-77.068
    28596 
    28597 > ui mousemode right "rotate selected models"
    28598 
    28599 > view matrix models
    28600 > #119,0.87368,-0.029223,-0.48563,134.2,-0.0093225,0.99701,-0.076767,-11.014,0.48642,0.071596,0.87079,-79.632
    28601 
    28602 > ui mousemode right "translate selected models"
    28603 
    28604 > view matrix models
    28605 > #119,0.87368,-0.029223,-0.48563,134.17,-0.0093225,0.99701,-0.076767,-10.925,0.48642,0.071596,0.87079,-80.089
    28606 
    28607 > select add #121
    28608 
    28609 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    28610 
    28611 > select subtract #119
    28612 
    28613 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28614 
    28615 > view matrix models
    28616 > #121,0.88716,-0.050461,-0.45869,131.86,0.045602,0.99872,-0.02167,-8.4136,0.4592,-0.001693,0.88833,-65.797
    28617 
    28618 > select add #118
    28619 
    28620 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    28621 
    28622 > select add #124
    28623 
    28624 2286 atoms, 2285 bonds, 2 pseudobonds, 294 residues, 5 models selected 
    28625 
    28626 > select subtract #121
    28627 
    28628 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28629 
    28630 > select subtract #118
    28631 
    28632 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28633 
    28634 > ui mousemode right "rotate selected models"
    28635 
    28636 > view matrix models
    28637 > #124,0.91456,-0.055919,-0.40056,112.36,0.1003,0.99082,0.090688,15.06,0.39181,-0.12312,0.91177,-37.412
    28638 
    28639 > ui mousemode right "translate selected models"
    28640 
    28641 [Repeated 1 time(s)]
    28642 
    28643 > view matrix models
    28644 > #124,0.91456,-0.055919,-0.40056,112.44,0.1003,0.99082,0.090688,15.05,0.39181,-0.12312,0.91177,-37.662
    28645 
    28646 > select add #121
    28647 
    28648 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28649 
    28650 > select subtract #124
    28651 
    28652 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28653 
    28654 > ui mousemode right "rotate selected models"
    28655 
    28656 > view matrix models
    28657 > #121,0.88557,-0.063237,-0.46018,134.93,0.043485,0.99763,-0.053408,-1.3233,0.46247,0.027286,0.88622,-71.562
    28658 
    28659 > select add #119
    28660 
    28661 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    28662 
    28663 > select subtract #121
    28664 
    28665 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28666 
    28667 > select subtract #119
    28668 
    28669 Nothing selected 
    28670 
    28671 > select add #124
    28672 
    28673 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28674 
    28675 > ui mousemode right "translate selected models"
    28676 
    28677 > view matrix models
    28678 > #124,0.91456,-0.055919,-0.40056,112.69,0.1003,0.99082,0.090688,14.925,0.39181,-0.12312,0.91177,-37.649
    28679 
    28680 > select add #123
    28681 
    28682 564 atoms, 566 bonds, 72 residues, 2 models selected 
    28683 
    28684 > hide #!127 models
    28685 
    28686 > show #!127 models
    28687 
    28688 > hide #!127 models
    28689 
    28690 > show #!116 models
    28691 
    28692 > hide #!116 models
    28693 
    28694 > show #!115 models
    28695 
    28696 > view matrix models
    28697 > #123,0.89919,-0.081655,-0.42988,127.53,0.12442,0.98959,0.072282,39.773,0.4195,-0.11848,0.89999,-40.411,#124,0.91456,-0.055919,-0.40056,112.28,0.1003,0.99082,0.090688,14.344,0.39181,-0.12312,0.91177,-36.544
    28698 
    28699 > undo
    28700 
    28701 > select add #115
    28702 
    28703 846 atoms, 849 bonds, 108 residues, 3 models selected 
    28704 
    28705 > view matrix models
    28706 > #115,0.91434,0.35986,0.18572,-100.94,-0.35685,0.93279,-0.050579,35.266,-0.19144,-0.020027,0.9813,47.453,#123,0.89919,-0.081655,-0.42988,127.58,0.12442,0.98959,0.072282,40.067,0.4195,-0.11848,0.89999,-40.258,#124,0.91456,-0.055919,-0.40056,112.33,0.1003,0.99082,0.090688,14.637,0.39181,-0.12312,0.91177,-36.391
    28707 
    28708 > ui mousemode right "rotate selected models"
    28709 
    28710 > view matrix models
    28711 > #115,0.92,0.34657,0.18301,-97.808,-0.3391,0.93801,-0.071712,34.437,-0.19652,0.0039179,0.98049,41.917,#123,0.89585,-0.095361,-0.43399,130.92,0.12696,0.99092,0.044338,44.604,0.42582,-0.09482,0.89982,-44.777,#124,0.91167,-0.069629,-0.40498,116.02,0.10374,0.99262,0.062867,18.875,0.39761,-0.099326,0.91216,-41.585
    28712 
    28713 > ui mousemode right "translate selected models"
    28714 
    28715 > view matrix models
    28716 > #115,0.92,0.34657,0.18301,-97.698,-0.3391,0.93801,-0.071712,34.423,-0.19652,0.0039179,0.98049,41.727,#123,0.89585,-0.095361,-0.43399,131.03,0.12696,0.99092,0.044338,44.59,0.42582,-0.09482,0.89982,-44.967,#124,0.91167,-0.069629,-0.40498,116.13,0.10374,0.99262,0.062867,18.861,0.39761,-0.099326,0.91216,-41.775
    28717 
    28718 > view matrix models
    28719 > #115,0.92,0.34657,0.18301,-97.7,-0.3391,0.93801,-0.071712,34.42,-0.19652,0.0039179,0.98049,41.771,#123,0.89585,-0.095361,-0.43399,131.03,0.12696,0.99092,0.044338,44.587,0.42582,-0.09482,0.89982,-44.923,#124,0.91167,-0.069629,-0.40498,116.13,0.10374,0.99262,0.062867,18.857,0.39761,-0.099326,0.91216,-41.731
    28720 
    28721 > select subtract #123
    28722 
    28723 564 atoms, 566 bonds, 72 residues, 2 models selected 
    28724 
    28725 > select subtract #124
    28726 
    28727 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28728 
    28729 > select subtract #115
    28730 
    28731 Nothing selected 
    28732 
    28733 > show #!127 models
    28734 
    28735 > close #127
    28736 
    28737 > combine #15-18,115
    28738 
    28739 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #16 to '7' 
    28740 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #17 to '8' 
    28741 Remapping chain ID '6' in copy of copy of copy of pointy-1pf.pdb #18 to '9' 
    28742 Remapping chain ID '6' in copy of copy of pointy-1pf.pdb #115 to '0' 
    28743 
    28744 > color #125 #73fa79ff
    28745 
    28746 > hide #!115 models
    28747 
    28748 > select add #119
    28749 
    28750 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28751 
    28752 > ui mousemode right "rotate selected models"
    28753 
    28754 > view matrix models
    28755 > #119,0.87394,-0.082442,-0.47899,142.92,0.04481,0.99498,-0.089494,-19.07,0.48396,0.056749,0.87325,-77.254
    28756 
    28757 > ui mousemode right "translate selected models"
    28758 
    28759 > view matrix models
    28760 > #119,0.87394,-0.082442,-0.47899,140.98,0.04481,0.99498,-0.089494,-19.676,0.48396,0.056749,0.87325,-77.769
    28761 
    28762 > view matrix models
    28763 > #119,0.87394,-0.082442,-0.47899,141.28,0.04481,0.99498,-0.089494,-19.414,0.48396,0.056749,0.87325,-77.682
    28764 
    28765 > ui mousemode right "rotate selected models"
    28766 
    28767 > view matrix models
    28768 > #119,0.87353,-0.076161,-0.48077,140.53,0.037723,0.99531,-0.08913,-18.095,0.48531,0.059721,0.8723,-78.333
    28769 
    28770 > select add #121
    28771 
    28772 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    28773 
    28774 > select subtract #119
    28775 
    28776 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28777 
    28778 > view matrix models
    28779 > #121,0.88486,-0.069724,-0.4606,136.39,0.043371,0.99677,-0.067567,1.7385,0.46383,0.039811,0.88503,-73.988
    28780 
    28781 > view matrix models
    28782 > #121,0.89439,-0.073387,-0.44122,131.2,0.047746,0.99648,-0.068955,1.1781,0.44473,0.040606,0.89474,-72.191
    28783 
    28784 > view matrix models
    28785 > #121,0.89436,-0.081313,-0.43989,132.45,0.048548,0.99518,-0.085251,4.571,0.4447,0.054889,0.894,-74.756
    28786 
    28787 > select add #124
    28788 
    28789 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28790 
    28791 > select subtract #121
    28792 
    28793 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28794 
    28795 > ui mousemode right "translate selected models"
    28796 
    28797 > view matrix models
    28798 > #124,0.91167,-0.069629,-0.40498,116.4,0.10374,0.99262,0.062867,18.95,0.39761,-0.099326,0.91216,-42.243
    28799 
    28800 > view matrix models
    28801 > #124,0.91167,-0.069629,-0.40498,116.55,0.10374,0.99262,0.062867,18.493,0.39761,-0.099326,0.91216,-42.477
    28802 
    28803 > select add #123
    28804 
    28805 564 atoms, 566 bonds, 72 residues, 2 models selected 
    28806 
    28807 > select subtract #124
    28808 
    28809 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28810 
    28811 > view matrix models
    28812 > #123,0.89585,-0.095361,-0.43399,131.29,0.12696,0.99092,0.044338,44.47,0.42582,-0.09482,0.89982,-45.523
    28813 
    28814 > ui mousemode right zoom
    28815 
    28816 > select clear
    28817 
    28818 > select add #121
    28819 
    28820 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28821 
    28822 > select add #119
    28823 
    28824 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    28825 
    28826 > select add #124
    28827 
    28828 2286 atoms, 2285 bonds, 2 pseudobonds, 294 residues, 5 models selected 
    28829 
    28830 > select add #123
    28831 
    28832 2568 atoms, 2568 bonds, 2 pseudobonds, 330 residues, 6 models selected 
    28833 
    28834 > ui mousemode right "translate selected models"
    28835 
    28836 > view matrix models
    28837 > #119,0.87353,-0.076161,-0.48077,140.56,0.037723,0.99531,-0.08913,-17.065,0.48531,0.059721,0.8723,-78.282,#121,0.89436,-0.081313,-0.43989,132.48,0.048548,0.99518,-0.085251,5.6013,0.4447,0.054889,0.894,-74.705,#123,0.89585,-0.095361,-0.43399,131.32,0.12696,0.99092,0.044338,45.5,0.42582,-0.09482,0.89982,-45.473,#124,0.91167,-0.069629,-0.40498,116.59,0.10374,0.99262,0.062867,19.523,0.39761,-0.099326,0.91216,-42.426
    28838 
    28839 > select subtract #123
    28840 
    28841 2286 atoms, 2285 bonds, 2 pseudobonds, 294 residues, 5 models selected 
    28842 
    28843 > select subtract #121
    28844 
    28845 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28846 
    28847 > select subtract #119
    28848 
    28849 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28850 
    28851 > ui mousemode right zoom
    28852 
    28853 > ui windowfill toggle
    28854 
    28855 [Repeated 1 time(s)]
    28856 
    28857 > select add #118
    28858 
    28859 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    28860 
    28861 > select subtract #118
    28862 
    28863 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28864 
    28865 > ui mousemode right "rotate selected models"
    28866 
    28867 > view matrix models
    28868 > #124,0.91679,-0.047597,-0.39653,110.27,0.096487,0.98986,0.10426,13.659,0.38755,-0.13385,0.91208,-34.596
    28869 
    28870 > view matrix models
    28871 > #124,0.91555,-0.050721,-0.39899,111.5,0.098372,0.99013,0.099864,14.068,0.38998,-0.13068,0.9115,-35.502
    28872 
    28873 > view matrix models
    28874 > #124,0.91599,-0.049101,-0.39818,110.99,0.09877,0.98953,0.10519,13.091,0.38885,-0.13568,0.91125,-34.387
    28875 
    28876 > view matrix models
    28877 > #124,0.91719,-0.040329,-0.39641,108.94,0.090661,0.98989,0.10906,13.9,0.38801,-0.13597,0.91157,-34.233
    28878 
    28879 > view matrix models
    28880 > #124,0.91625,-0.047214,-0.39781,110.55,0.097027,0.98962,0.10603,13.263,0.38867,-0.13574,0.91132,-34.354
    28881 
    28882 > ui mousemode right zoom
    28883 
    28884 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    28885 > MRCLaboratoryofMolecularBiology/Documents/Carter
    28886 > Lab/Diorge/Membranes/Fit14-25.cxs"
    28887 
    28888 [Repeated 1 time(s)]
    28889 
    28890 > select subtract #124
    28891 
    28892 Nothing selected 
    28893 
    28894 > select add #122
    28895 
    28896 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28897 
    28898 > select subtract #122
    28899 
    28900 Nothing selected 
    28901 
    28902 > select add #119
    28903 
    28904 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28905 
    28906 > ui mousemode right "translate selected models"
    28907 
    28908 > view matrix models
    28909 > #119,0.87353,-0.076161,-0.48077,140.63,0.037723,0.99531,-0.08913,-18.977,0.48531,0.059721,0.8723,-77.971
    28910 
    28911 > view matrix models
    28912 > #119,0.87353,-0.076161,-0.48077,141.07,0.037723,0.99531,-0.08913,-18.529,0.48531,0.059721,0.8723,-77.814
    28913 
    28914 > ui mousemode right zoom
    28915 
    28916 > select add #118
    28917 
    28918 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    28919 
    28920 > select subtract #119
    28921 
    28922 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28923 
    28924 > select subtract #118
    28925 
    28926 Nothing selected 
    28927 
    28928 > select add #124
    28929 
    28930 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28931 
    28932 > ui mousemode right "translate selected models"
    28933 
    28934 > view matrix models
    28935 > #124,0.91625,-0.047214,-0.39781,110.67,0.097027,0.98962,0.10603,13.25,0.38867,-0.13574,0.91132,-34.679
    28936 
    28937 > ui mousemode right "rotate selected models"
    28938 
    28939 > view matrix models
    28940 > #124,0.9194,-0.037918,-0.3915,107.3,0.097742,0.98615,0.13403,8.4502,0.38099,-0.16149,0.91037,-28.638
    28941 
    28942 > ui mousemode right zoom
    28943 
    28944 > select subtract #124
    28945 
    28946 Nothing selected 
    28947 
    28948 > select add #118
    28949 
    28950 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28951 
    28952 > ui mousemode right "translate selected models"
    28953 
    28954 > view matrix models
    28955 > #118,0.92103,-0.10521,-0.37502,111.48,0.10468,0.99427,-0.021841,32.821,0.37516,-0.019141,0.92676,-55.871
    28956 
    28957 > view matrix models
    28958 > #118,0.92103,-0.10521,-0.37502,111.18,0.10468,0.99427,-0.021841,32.858,0.37516,-0.019141,0.92676,-56.015
    28959 
    28960 > view matrix models
    28961 > #118,0.92103,-0.10521,-0.37502,110.7,0.10468,0.99427,-0.021841,32.877,0.37516,-0.019141,0.92676,-56.412
    28962 
    28963 > select subtract #118
    28964 
    28965 Nothing selected 
    28966 
    28967 > select add #123
    28968 
    28969 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28970 
    28971 > select subtract #123
    28972 
    28973 Nothing selected 
    28974 
    28975 > select add #123
    28976 
    28977 282 atoms, 283 bonds, 36 residues, 1 model selected 
    28978 
    28979 > select subtract #123
    28980 
    28981 Nothing selected 
    28982 
    28983 > select add #120
    28984 
    28985 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    28986 
    28987 > view matrix models
    28988 > #120,0.91258,-0.070384,-0.4028,112.91,0.068723,0.99746,-0.018595,62.294,0.40308,-0.010712,0.9151,-59.243
    28989 
    28990 > view matrix models
    28991 > #120,0.91258,-0.070384,-0.4028,112.9,0.068723,0.99746,-0.018595,62.263,0.40308,-0.010712,0.9151,-59.247
    28992 
    28993 > view matrix models
    28994 > #120,0.91258,-0.070384,-0.4028,112.9,0.068723,0.99746,-0.018595,62.138,0.40308,-0.010712,0.9151,-59.259
    28995 
    28996 > view matrix models
    28997 > #120,0.91258,-0.070384,-0.4028,112.91,0.068723,0.99746,-0.018595,62.353,0.40308,-0.010712,0.9151,-59.238
    28998 
    28999 > ui mousemode right "rotate selected models"
    29000 
    29001 > view matrix models
    29002 > #120,0.90062,-0.14785,-0.40869,131.32,0.14354,0.98878,-0.041387,53.273,0.41022,-0.02139,0.91173,-57.985
    29003 
    29004 > ui mousemode right "translate selected models"
    29005 
    29006 > view matrix models
    29007 > #120,0.90062,-0.14785,-0.40869,129.53,0.14354,0.98878,-0.041387,53.563,0.41022,-0.02139,0.91173,-58.175
    29008 
    29009 > view matrix models
    29010 > #120,0.90062,-0.14785,-0.40869,129,0.14354,0.98878,-0.041387,53.36,0.41022,-0.02139,0.91173,-58.324
    29011 
    29012 > select add #122
    29013 
    29014 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    29015 
    29016 > select subtract #122
    29017 
    29018 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29019 
    29020 > select subtract #120
    29021 
    29022 Nothing selected 
    29023 
    29024 > select add #119
    29025 
    29026 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29027 
    29028 > ui mousemode right "rotate selected models"
    29029 
    29030 > view matrix models
    29031 > #119,0.87499,-0.043646,-0.48217,134.86,0.002118,0.99626,-0.086338,-11.967,0.48414,0.074523,0.87181,-80.296
    29032 
    29033 > ui mousemode right "translate selected models"
    29034 
    29035 > view matrix models
    29036 > #119,0.87499,-0.043646,-0.48217,135.01,0.002118,0.99626,-0.086338,-11.92,0.48414,0.074523,0.87181,-80.226
    29037 
    29038 > select subtract #119
    29039 
    29040 Nothing selected 
    29041 
    29042 > select add #121
    29043 
    29044 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29045 
    29046 > ui mousemode right zoom
    29047 
    29048 > select subtract #121
    29049 
    29050 Nothing selected 
    29051 
    29052 > select add #119
    29053 
    29054 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29055 
    29056 > select subtract #119
    29057 
    29058 Nothing selected 
    29059 
    29060 > select add #122
    29061 
    29062 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29063 
    29064 > ui mousemode right "rotate selected models"
    29065 
    29066 > view matrix models
    29067 > #122,0.91015,0.045559,-0.41176,92.406,-0.013327,0.99664,0.080813,-34.613,0.41406,-0.068065,0.9077,-49.929
    29068 
    29069 > ui mousemode right "translate selected models"
    29070 
    29071 > view matrix models
    29072 > #122,0.91015,0.045559,-0.41176,90.92,-0.013327,0.99664,0.080813,-35.101,0.41406,-0.068065,0.9077,-50.31
    29073 
    29074 > select add #121
    29075 
    29076 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    29077 
    29078 > select subtract #122
    29079 
    29080 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29081 
    29082 > ui mousemode right "rotate selected models"
    29083 
    29084 > view matrix models
    29085 > #121,0.89332,-0.10288,-0.43749,136.32,0.07393,0.99382,-0.082748,0.1382,0.4433,0.041577,0.89541,-72.167
    29086 
    29087 > select add #118
    29088 
    29089 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    29090 
    29091 > select subtract #118
    29092 
    29093 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29094 
    29095 > select subtract #121
    29096 
    29097 Nothing selected 
    29098 
    29099 > select add #124
    29100 
    29101 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29102 
    29103 > select add #122
    29104 
    29105 564 atoms, 566 bonds, 72 residues, 2 models selected 
    29106 
    29107 > select subtract #122
    29108 
    29109 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29110 
    29111 > select add #120
    29112 
    29113 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    29114 
    29115 > select subtract #120
    29116 
    29117 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29118 
    29119 > select add #119
    29120 
    29121 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    29122 
    29123 > ui mousemode right "translate selected models"
    29124 
    29125 > view matrix models
    29126 > #119,0.87499,-0.043646,-0.48217,136.25,0.002118,0.99626,-0.086338,-12.511,0.48414,0.074523,0.87181,-79.281,#124,0.9194,-0.037918,-0.3915,108.54,0.097742,0.98615,0.13403,7.8594,0.38099,-0.16149,0.91037,-27.693
    29127 
    29128 > view matrix models
    29129 > #119,0.87499,-0.043646,-0.48217,135.94,0.002118,0.99626,-0.086338,-12.082,0.48414,0.074523,0.87181,-79.265,#124,0.9194,-0.037918,-0.3915,108.23,0.097742,0.98615,0.13403,8.2882,0.38099,-0.16149,0.91037,-27.678
    29130 
    29131 > select subtract #119
    29132 
    29133 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29134 
    29135 > ui mousemode right "rotate selected models"
    29136 
    29137 > view matrix models
    29138 > #124,0.92694,0.025484,-0.37435,92.817,0.034002,0.98788,0.15144,17.263,0.37368,-0.15311,0.91484,-28.494
    29139 
    29140 > ui windowfill toggle
    29141 
    29142 [Repeated 1 time(s)]
    29143 
    29144 > select add #119
    29145 
    29146 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    29147 
    29148 > select subtract #124
    29149 
    29150 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29151 
    29152 > ui mousemode right "translate selected models"
    29153 
    29154 > view matrix models
    29155 > #119,0.87499,-0.043646,-0.48217,133.74,0.002118,0.99626,-0.086338,-12.07,0.48414,0.074523,0.87181,-79.521
    29156 
    29157 > view matrix models
    29158 > #119,0.87499,-0.043646,-0.48217,134.08,0.002118,0.99626,-0.086338,-11.169,0.48414,0.074523,0.87181,-79.556
    29159 
    29160 > view matrix models
    29161 > #119,0.87499,-0.043646,-0.48217,134.14,0.002118,0.99626,-0.086338,-11.173,0.48414,0.074523,0.87181,-80.021
    29162 
    29163 > view matrix models
    29164 > #119,0.87499,-0.043646,-0.48217,133.89,0.002118,0.99626,-0.086338,-11.169,0.48414,0.074523,0.87181,-80.105
    29165 
    29166 > select add #123
    29167 
    29168 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    29169 
    29170 > select subtract #119
    29171 
    29172 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29173 
    29174 > ui mousemode right "rotate selected models"
    29175 
    29176 > view matrix models
    29177 > #123,0.9054,-0.069638,-0.41882,122.26,0.12209,0.9875,0.099735,36.658,0.40663,-0.14143,0.90258,-34.336
    29178 
    29179 > ui mousemode right "translate selected models"
    29180 
    29181 > view matrix models
    29182 > #123,0.9054,-0.069638,-0.41882,122.68,0.12209,0.9875,0.099735,36.735,0.40663,-0.14143,0.90258,-35.036
    29183 
    29184 > view matrix models
    29185 > #123,0.9054,-0.069638,-0.41882,122.48,0.12209,0.9875,0.099735,36.516,0.40663,-0.14143,0.90258,-34.718
    29186 
    29187 > ui mousemode right "rotate selected models"
    29188 
    29189 > view matrix models
    29190 > #123,0.90895,-0.059133,-0.41269,118.86,0.12346,0.98367,0.13098,31.038,0.39821,-0.17001,0.9014,-28.011
    29191 
    29192 > ui mousemode right "translate selected models"
    29193 
    29194 > view matrix models
    29195 > #123,0.90895,-0.059133,-0.41269,118.98,0.12346,0.98367,0.13098,31.138,0.39821,-0.17001,0.9014,-28.26
    29196 
    29197 > view matrix models
    29198 > #123,0.90895,-0.059133,-0.41269,119.02,0.12346,0.98367,0.13098,31.246,0.39821,-0.17001,0.9014,-28.33
    29199 
    29200 > select add #122
    29201 
    29202 564 atoms, 566 bonds, 72 residues, 2 models selected 
    29203 
    29204 > select subtract #123
    29205 
    29206 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29207 
    29208 > ui mousemode right "rotate selected models"
    29209 
    29210 > view matrix models
    29211 > #122,0.90882,0.0046606,-0.41717,99.109,0.026487,0.99728,0.068845,-40.793,0.41635,-0.073617,0.90622,-49.544
    29212 
    29213 > ui mousemode right "translate selected models"
    29214 
    29215 > view matrix models
    29216 > #122,0.90882,0.0046606,-0.41717,99.408,0.026487,0.99728,0.068845,-43.208,0.41635,-0.073617,0.90622,-49.653
    29217 
    29218 > ui mousemode right "rotate selected models"
    29219 
    29220 > view matrix models
    29221 > #122,0.90916,0.0084511,-0.41636,98.55,0.026905,0.99651,0.078976,-45.059,0.41558,-0.083004,0.90576,-47.828
    29222 
    29223 > select subtract #122
    29224 
    29225 Nothing selected 
    29226 
    29227 > select add #123
    29228 
    29229 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29230 
    29231 > select add #121
    29232 
    29233 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    29234 
    29235 > ui mousemode right "translate selected models"
    29236 
    29237 > view matrix models
    29238 > #121,0.89332,-0.10288,-0.43749,135.19,0.07393,0.99382,-0.082748,-0.0097375,0.4433,0.041577,0.89541,-72.144,#123,0.90895,-0.059133,-0.41269,117.89,0.12346,0.98367,0.13098,31.098,0.39821,-0.17001,0.9014,-28.307
    29239 
    29240 > view matrix models
    29241 > #121,0.89332,-0.10288,-0.43749,134.68,0.07393,0.99382,-0.082748,0.52871,0.4433,0.041577,0.89541,-72.326,#123,0.90895,-0.059133,-0.41269,117.39,0.12346,0.98367,0.13098,31.637,0.39821,-0.17001,0.9014,-28.49
    29242 
    29243 > select subtract #121
    29244 
    29245 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29246 
    29247 > select add #118
    29248 
    29249 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    29250 
    29251 > select subtract #118
    29252 
    29253 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29254 
    29255 > select add #124
    29256 
    29257 564 atoms, 566 bonds, 72 residues, 2 models selected 
    29258 
    29259 > view matrix models
    29260 > #123,0.90895,-0.059133,-0.41269,117.4,0.12346,0.98367,0.13098,31.662,0.39821,-0.17001,0.9014,-29.07,#124,0.92694,0.025484,-0.37435,92.828,0.034002,0.98788,0.15144,17.288,0.37368,-0.15311,0.91484,-29.075
    29261 
    29262 > view matrix models
    29263 > #123,0.90895,-0.059133,-0.41269,117.47,0.12346,0.98367,0.13098,31.484,0.39821,-0.17001,0.9014,-29.042,#124,0.92694,0.025484,-0.37435,92.895,0.034002,0.98788,0.15144,17.11,0.37368,-0.15311,0.91484,-29.047
    29264 
    29265 > view matrix models
    29266 > #123,0.90895,-0.059133,-0.41269,117.85,0.12346,0.98367,0.13098,31.693,0.39821,-0.17001,0.9014,-28.7,#124,0.92694,0.025484,-0.37435,93.274,0.034002,0.98788,0.15144,17.318,0.37368,-0.15311,0.91484,-28.705
    29267 
    29268 > view matrix models
    29269 > #123,0.90895,-0.059133,-0.41269,117.95,0.12346,0.98367,0.13098,31.566,0.39821,-0.17001,0.9014,-29.05,#124,0.92694,0.025484,-0.37435,93.375,0.034002,0.98788,0.15144,17.192,0.37368,-0.15311,0.91484,-29.054
    29270 
    29271 > select subtract #124
    29272 
    29273 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29274 
    29275 > view matrix models
    29276 > #123,0.90895,-0.059133,-0.41269,118.26,0.12346,0.98367,0.13098,31.48,0.39821,-0.17001,0.9014,-29.625
    29277 
    29278 > select add #121
    29279 
    29280 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    29281 
    29282 > select subtract #121
    29283 
    29284 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29285 
    29286 > select add #117
    29287 
    29288 564 atoms, 566 bonds, 72 residues, 2 models selected 
    29289 
    29290 > select subtract #123
    29291 
    29292 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29293 
    29294 > view matrix models
    29295 > #117,0.91729,-0.00669,-0.39815,97.549,0.033935,0.99753,0.061422,-18.17,0.39676,-0.069853,0.91526,-48.808
    29296 
    29297 > ui mousemode right "rotate selected models"
    29298 
    29299 > view matrix models
    29300 > #117,0.92027,0.0054453,-0.39124,93.617,0.032927,0.99528,0.091303,-23.189,0.38989,-0.096906,0.91575,-42.975
    29301 
    29302 > ui mousemode right "translate selected models"
    29303 
    29304 > select subtract #117
    29305 
    29306 Nothing selected 
    29307 
    29308 > select add #120
    29309 
    29310 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29311 
    29312 > select subtract #120
    29313 
    29314 Nothing selected 
    29315 
    29316 > select add #123
    29317 
    29318 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29319 
    29320 > view matrix models
    29321 > #123,0.90895,-0.059133,-0.41269,117.87,0.12346,0.98367,0.13098,30.755,0.39821,-0.17001,0.9014,-29.591
    29322 
    29323 > view matrix models
    29324 > #123,0.90895,-0.059133,-0.41269,118.33,0.12346,0.98367,0.13098,30.447,0.39821,-0.17001,0.9014,-29.52
    29325 
    29326 > ui mousemode right "rotate selected models"
    29327 
    29328 > view matrix models
    29329 > #123,0.91126,-0.026043,-0.411,111.96,0.092167,0.98558,0.1419,34.231,0.40138,-0.16719,0.90052,-30.456
    29330 
    29331 > ui mousemode right "translate selected models"
    29332 
    29333 > view matrix models
    29334 > #123,0.91126,-0.026043,-0.411,111.96,0.092167,0.98558,0.1419,33.962,0.40138,-0.16719,0.90052,-30.431
    29335 
    29336 > show #!105 models
    29337 
    29338 > hide #!105 models
    29339 
    29340 > show #!9 models
    29341 
    29342 > hide #!9 models
    29343 
    29344 > ui mousemode right "rotate selected models"
    29345 
    29346 > view matrix models
    29347 > #123,0.90813,-0.041458,-0.41663,116.24,0.091779,0.9906,0.10148,40.764,0.40851,-0.13039,0.90339,-38.59
    29348 
    29349 > ui mousemode right "translate selected models"
    29350 
    29351 > view matrix models
    29352 > #123,0.90813,-0.041458,-0.41663,116.5,0.091779,0.9906,0.10148,41.565,0.40851,-0.13039,0.90339,-38.508
    29353 
    29354 > select add #118
    29355 
    29356 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    29357 
    29358 > select subtract #118
    29359 
    29360 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29361 
    29362 > select subtract #123
    29363 
    29364 Nothing selected 
    29365 
    29366 > select add #124
    29367 
    29368 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29369 
    29370 > ui mousemode right "rotate selected models"
    29371 
    29372 > view matrix models
    29373 > #124,0.92266,0.013109,-0.38539,98.375,0.033998,0.99276,0.11516,23.164,0.38411,-0.11936,0.91554,-36.943
    29374 
    29375 > ui mousemode right "translate selected models"
    29376 
    29377 > view matrix models
    29378 > #124,0.92266,0.013109,-0.38539,98.543,0.033998,0.99276,0.11516,23.783,0.38411,-0.11936,0.91554,-36.905
    29379 
    29380 > view matrix models
    29381 > #124,0.92266,0.013109,-0.38539,98.363,0.033998,0.99276,0.11516,23.47,0.38411,-0.11936,0.91554,-36.845
    29382 
    29383 > select subtract #124
    29384 
    29385 Nothing selected 
    29386 
    29387 > select add #122
    29388 
    29389 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29390 
    29391 > select subtract #122
    29392 
    29393 Nothing selected 
    29394 
    29395 > select add #119
    29396 
    29397 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29398 
    29399 > view matrix models
    29400 > #119,0.87499,-0.043646,-0.48217,133.24,0.002118,0.99626,-0.086338,-10.889,0.48414,0.074523,0.87181,-80.333
    29401 
    29402 > view matrix models
    29403 > #119,0.87499,-0.043646,-0.48217,133.14,0.002118,0.99626,-0.086338,-10.342,0.48414,0.074523,0.87181,-80.421
    29404 
    29405 > select add #121
    29406 
    29407 2004 atoms, 2002 bonds, 2 pseudobonds, 258 residues, 4 models selected 
    29408 
    29409 > select subtract #119
    29410 
    29411 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29412 
    29413 > view matrix models
    29414 > #121,0.89332,-0.10288,-0.43749,133.84,0.07393,0.99382,-0.082748,0.666,0.4433,0.041577,0.89541,-72.534
    29415 
    29416 > view matrix models
    29417 > #121,0.89332,-0.10288,-0.43749,133.81,0.07393,0.99382,-0.082748,0.87303,0.4433,0.041577,0.89541,-72.439
    29418 
    29419 > view matrix models
    29420 > #121,0.89332,-0.10288,-0.43749,133.62,0.07393,0.99382,-0.082748,0.88251,0.4433,0.041577,0.89541,-72.484
    29421 
    29422 > view matrix models
    29423 > #121,0.89332,-0.10288,-0.43749,133.34,0.07393,0.99382,-0.082748,0.95939,0.4433,0.041577,0.89541,-72.673
    29424 
    29425 > view matrix models
    29426 > #121,0.89332,-0.10288,-0.43749,133.15,0.07393,0.99382,-0.082748,0.9177,0.4433,0.041577,0.89541,-72.095
    29427 
    29428 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29429 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29430 > Lab/Diorge/Membranes/Fit14-26.cxs"
    29431 
    29432 > select subtract #121
    29433 
    29434 Nothing selected 
    29435 
    29436 > select clear
    29437 
    29438 > select add #121
    29439 
    29440 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29441 
    29442 > select add #122
    29443 
    29444 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 3 models selected 
    29445 
    29446 > select subtract #122
    29447 
    29448 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29449 
    29450 > select subtract #121
    29451 
    29452 Nothing selected 
    29453 
    29454 > select add #119
    29455 
    29456 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29457 
    29458 > view matrix models
    29459 > #119,0.87499,-0.043646,-0.48217,134.13,0.002118,0.99626,-0.086338,-9.943,0.48414,0.074523,0.87181,-79.933
    29460 
    29461 > view matrix models
    29462 > #119,0.87499,-0.043646,-0.48217,134.24,0.002118,0.99626,-0.086338,-9.9587,0.48414,0.074523,0.87181,-79.9
    29463 
    29464 > ui mousemode right "rotate selected models"
    29465 
    29466 > view matrix models
    29467 > #119,0.87406,-0.045335,-0.4837,135.07,0.0058225,0.99654,-0.082881,-11.475,0.48579,0.069626,0.8713,-79.201
    29468 
    29469 > select subtract #119
    29470 
    29471 Nothing selected 
    29472 
    29473 > select add #121
    29474 
    29475 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29476 
    29477 > select subtract #121
    29478 
    29479 Nothing selected 
    29480 
    29481 > select add #117
    29482 
    29483 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29484 
    29485 > select subtract #117
    29486 
    29487 Nothing selected 
    29488 
    29489 > select add #121
    29490 
    29491 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29492 
    29493 > ui mousemode right "translate selected models"
    29494 
    29495 > view matrix models
    29496 > #121,0.89332,-0.10288,-0.43749,132.87,0.07393,0.99382,-0.082748,0.94643,0.4433,0.041577,0.89541,-71.794
    29497 
    29498 > view matrix models
    29499 > #121,0.89332,-0.10288,-0.43749,132.81,0.07393,0.99382,-0.082748,0.72133,0.4433,0.041577,0.89541,-71.721
    29500 
    29501 > view matrix models
    29502 > #121,0.89332,-0.10288,-0.43749,132.84,0.07393,0.99382,-0.082748,0.9532,0.4433,0.041577,0.89541,-71.701
    29503 
    29504 > view matrix models
    29505 > #121,0.89332,-0.10288,-0.43749,132.86,0.07393,0.99382,-0.082748,0.91412,0.4433,0.041577,0.89541,-71.733
    29506 
    29507 > ui mousemode right "rotate selected models"
    29508 
    29509 > view matrix models
    29510 > #121,0.89493,-0.089023,-0.43724,129.84,0.067776,0.99565,-0.063993,-1.9784,0.44104,0.027634,0.89706,-68.947
    29511 
    29512 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29513 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29514 > Lab/Diorge/Membranes/Fit14-26.cxs"
    29515 
    29516 Window position QRect(-565,671 321x152) outside any known screen, using
    29517 primary screen 
    29518 
    29519 > view matrix models
    29520 > #121,0.76265,-0.51489,-0.39149,228.89,0.48516,0.85565,-0.18024,-37.395,0.42778,-0.052474,0.90236,-52.029
    29521 
    29522 > undo
    29523 
    29524 Drag select of 825 residues, 5 pseudobonds 
    29525 
    29526 > color zone #8 near sel distance 9.04
    29527 
    29528 > select clear
    29529 
    29530 > select add #123
    29531 
    29532 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29533 
    29534 > ui mousemode right "rotate selected models"
    29535 
    29536 > view matrix models
    29537 > #123,0.90821,-0.047929,-0.41576,117.41,0.083457,0.99421,0.067694,48.92,0.41011,-0.096179,0.90695,-45.273
    29538 
    29539 > view matrix models
    29540 > #123,0.91066,-0.035014,-0.41167,113.98,0.079071,0.99275,0.090477,45.759,0.40552,-0.11495,0.90683,-41.176
    29541 
    29542 > view matrix models
    29543 > #123,0.90881,-0.041283,-0.41516,116.06,0.072623,0.99555,0.059979,52.268,0.41084,-0.08466,0.90777,-47.517
    29544 
    29545 > ui mousemode right "rotate selected models"
    29546 
    29547 > ui mousemode right "translate selected models"
    29548 
    29549 > view matrix models
    29550 > #123,0.90881,-0.041283,-0.41516,115.84,0.072623,0.99555,0.059979,52.244,0.41084,-0.08466,0.90777,-46.516
    29551 
    29552 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29553 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29554 > Lab/Diorge/Membranes/Fit14-26.cxs"
    29555 
    29556 > select #8
    29557 
    29558 2 models selected 
    29559 
    29560 > transparency #8.1 50
    29561 
    29562 > select #8
    29563 
    29564 2 models selected 
    29565 
    29566 > select clear
    29567 
    29568 > select add #122
    29569 
    29570 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29571 
    29572 > select subtract #122
    29573 
    29574 Nothing selected 
    29575 
    29576 > select add #119
    29577 
    29578 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29579 
    29580 > ui mousemode right "rotate selected models"
    29581 
    29582 > view matrix models
    29583 > #119,0.8742,-0.043893,-0.48358,134.74,0.011478,0.9975,-0.069789,-15.477,0.48543,0.055459,0.87251,-76.674
    29584 
    29585 > view matrix models
    29586 > #119,0.87615,-0.048359,-0.47961,134.38,0.022612,0.99798,-0.05932,-19.982,0.48151,0.041128,0.87547,-73.739
    29587 
    29588 > view matrix models
    29589 > #119,0.87607,-0.017987,-0.48185,129.06,-0.0084903,0.99857,-0.052711,-15.05,0.48211,0.05027,0.87467,-75.44
    29590 
    29591 > ui mousemode right "translate selected models"
    29592 
    29593 > view matrix models
    29594 > #119,0.87607,-0.017987,-0.48185,128.39,-0.0084903,0.99857,-0.052711,-15.517,0.48211,0.05027,0.87467,-75.634
    29595 
    29596 > select clear
    29597 
    29598 > select add #121
    29599 
    29600 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29601 
    29602 > ui mousemode right "rotate selected models"
    29603 
    29604 > view matrix models
    29605 > #121,0.89788,-0.063422,-0.43564,124.03,0.041764,0.99738,-0.059121,2.044,0.43825,0.03489,0.89818,-69.983
    29606 
    29607 > undo
    29608 
    29609 > select clear
    29610 
    29611 > undo
    29612 
    29613 > redo
    29614 
    29615 Drag select of 8 postprocess_masked330_onepf.mrc , 4 residues 
    29616 Drag select of 8 postprocess_masked330_onepf.mrc , 5 residues 
    29617 
    29618 > select clear
    29619 
    29620 > select add #121
    29621 
    29622 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29623 
    29624 > view matrix models
    29625 > #121,0.91926,-0.083226,-0.38476,113.08,0.066245,0.99616,-0.057206,-3.1407,0.38804,0.027099,0.92124,-62.873
    29626 
    29627 > view matrix models
    29628 > #121,0.90389,-0.09145,-0.41787,124.53,0.072858,0.99552,-0.06027,-3.754,0.42151,0.024032,0.9065,-66.168
    29629 
    29630 > view matrix models
    29631 > #121,0.90641,-0.048122,-0.41964,116.11,0.028264,0.99817,-0.053416,3.506,0.42145,0.036556,0.90612,-68.463
    29632 
    29633 > view matrix models
    29634 > #121,0.87156,-0.071379,-0.48506,140.99,0.014552,0.99268,-0.11993,20.878,0.49007,0.097467,0.86622,-86.062
    29635 
    29636 > view matrix models
    29637 > #121,0.86303,-0.0598,-0.5016,143.89,0.010981,0.99495,-0.099722,17.073,0.50504,0.080555,0.85933,-84.513
    29638 
    29639 > view matrix models
    29640 > #121,0.84038,0.083471,-0.53554,128.12,-0.18893,0.97121,-0.1451,71.866,0.50801,0.22311,0.83195,-106.74
    29641 
    29642 > undo
    29643 
    29644 > view matrix models
    29645 > #121,0.80379,-0.14193,-0.57774,187.17,0.042172,0.98228,-0.18263,29.924,0.59342,0.12244,0.79553,-97.688
    29646 
    29647 > view matrix models
    29648 > #121,0.80264,-0.11919,-0.58443,184.43,0.009606,0.98229,-0.18713,37.523,0.59639,0.14459,0.78957,-101.31
    29649 
    29650 > ui mousemode right "translate selected models"
    29651 
    29652 > view matrix models
    29653 > #121,0.80264,-0.11919,-0.58443,185.32,0.009606,0.98229,-0.18713,38.525,0.59639,0.14459,0.78957,-100.58
    29654 
    29655 > view matrix models
    29656 > #121,0.80264,-0.11919,-0.58443,184.88,0.009606,0.98229,-0.18713,37.882,0.59639,0.14459,0.78957,-101.14
    29657 
    29658 > view matrix models
    29659 > #121,0.80264,-0.11919,-0.58443,185.07,0.009606,0.98229,-0.18713,37.806,0.59639,0.14459,0.78957,-101.63
    29660 
    29661 > undo
    29662 
    29663 > ui mousemode right "rotate selected models"
    29664 
    29665 > view matrix models
    29666 > #121,0.80496,-0.10683,-0.58363,181.88,0.016702,0.98735,-0.15769,29.48,0.59309,0.11719,0.79656,-96.664
    29667 
    29668 > view matrix models
    29669 > #121,0.80633,-0.098094,-0.58327,179.86,0.033826,0.99218,-0.1201,17.408,0.59049,0.077114,0.80335,-89.871
    29670 
    29671 > view matrix models
    29672 > #121,0.82782,-0.11825,-0.54839,172.21,-0.012346,0.97345,-0.22855,52.484,0.56086,0.19597,0.80438,-106.65
    29673 
    29674 > view matrix models
    29675 > #121,0.86289,-0.10086,-0.49523,150.89,-0.0022311,0.97912,-0.20329,44.198,0.50539,0.17652,0.84464,-99.73
    29676 
    29677 > view matrix models
    29678 > #121,0.94355,-0.037637,-0.3291,88.538,0.034872,0.99929,-0.014302,-5.6488,0.3294,0.002018,0.94419,-50.544
    29679 
    29680 > view matrix models
    29681 > #121,0.92847,-0.043142,-0.36889,100.76,0.031387,0.99879,-0.03781,-0.063818,0.37008,0.023527,0.9287,-59.852
    29682 
    29683 > view matrix models
    29684 > #121,0.94351,-0.052865,-0.3271,91.042,0.028385,0.99646,-0.07917,9.3978,0.33012,0.065413,0.94167,-62.265
    29685 
    29686 > view matrix models
    29687 > #121,0.92861,-0.055897,-0.36682,102.75,0.026476,0.99605,-0.084757,11.002,0.37011,0.068995,0.92642,-68.062
    29688 
    29689 > view matrix models
    29690 > #121,0.92649,-0.050866,-0.37288,103.45,0.027777,0.99736,-0.067039,6.8859,0.3753,0.051753,0.92546,-65.646
    29691 
    29692 > view matrix models
    29693 > #121,0.92378,-0.049584,-0.37969,105.15,0.034592,0.99833,-0.046211,1.0718,0.38135,0.029555,0.92396,-62.352
    29694 
    29695 > view matrix models
    29696 > #121,0.92354,-0.054778,-0.37958,106.17,0.039817,0.99809,-0.047161,0.23736,0.38144,0.028441,0.92396,-62.158
    29697 
    29698 > undo
    29699 
    29700 > ui mousemode right "translate selected models"
    29701 
    29702 > view matrix models
    29703 > #121,0.92378,-0.049584,-0.37969,105.65,0.034592,0.99833,-0.046211,0.91774,0.38135,0.029555,0.92396,-62.249
    29704 
    29705 > view matrix models
    29706 > #121,0.92378,-0.049584,-0.37969,105.3,0.034592,0.99833,-0.046211,0.32237,0.38135,0.029555,0.92396,-62.342
    29707 
    29708 > select clear
    29709 
    29710 > select add #119
    29711 
    29712 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29713 
    29714 > view matrix models
    29715 > #119,0.87607,-0.017987,-0.48185,129.04,-0.0084903,0.99857,-0.052711,-16.243,0.48211,0.05027,0.87467,-75.532
    29716 
    29717 > ui mousemode right "rotate selected models"
    29718 
    29719 > view matrix models
    29720 > #119,0.87549,-0.029908,-0.4823,131.52,-0.0085159,0.99697,-0.077282,-10.943,0.48315,0.071767,0.87259,-79.422
    29721 
    29722 > ui mousemode right "translate selected models"
    29723 
    29724 > view matrix models
    29725 > #119,0.87549,-0.029908,-0.4823,131.64,-0.0085159,0.99697,-0.077282,-10.624,0.48315,0.071767,0.87259,-79.376
    29726 
    29727 > select add #125
    29728 
    29729 2286 atoms, 2285 bonds, 2 pseudobonds, 294 residues, 4 models selected 
    29730 
    29731 > view matrix models
    29732 > #119,0.87549,-0.029908,-0.4823,131.95,-0.0085159,0.99697,-0.077282,-10.372,0.48315,0.071767,0.87259,-79.306,#125,0.92461,-0.034563,-0.37933,99.539,0.042229,0.99904,0.011903,14.564,0.37856,-0.027025,0.92518,-54.057
    29733 
    29734 > ui mousemode right "rotate selected models"
    29735 
    29736 > view matrix models
    29737 > #119,0.8743,-0.020796,-0.48494,130.73,-0.009271,0.99818,-0.059521,-14.003,0.48529,0.056535,0.87252,-76.416,#125,0.92412,-0.025212,-0.38126,98.499,0.039418,0.99879,0.029496,11.614,0.38005,-0.042287,0.924,-51.625
    29738 
    29739 > undo
    29740 
    29741 [Repeated 2 time(s)]
    29742 
    29743 > redo
    29744 
    29745 > select subtract #119
    29746 
    29747 1284 atoms, 1284 bonds, 1 pseudobond, 165 residues, 2 models selected 
    29748 
    29749 > view matrix models
    29750 > #125,0.92427,-0.027984,-0.38071,98.348,0.040247,0.99889,0.024288,12.275,0.3796,-0.037772,0.92438,-52.18
    29751 
    29752 > ui mousemode right "translate selected models"
    29753 
    29754 > view matrix models
    29755 > #125,0.92427,-0.027984,-0.38071,98.656,0.040247,0.99889,0.024288,12.099,0.3796,-0.037772,0.92438,-51.984
    29756 
    29757 > select add #121
    29758 
    29759 2286 atoms, 2285 bonds, 2 pseudobonds, 294 residues, 4 models selected 
    29760 
    29761 > select subtract #125
    29762 
    29763 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29764 
    29765 > ui mousemode right "rotate selected models"
    29766 
    29767 > view matrix models
    29768 > #121,0.92324,-0.050219,-0.38092,105.78,0.044038,0.99872,-0.024931,-6.0128,0.38169,0.0062428,0.92427,-58.031
    29769 
    29770 > select clear
    29771 
    29772 > select down
    29773 
    29774 Nothing selected 
    29775 
    29776 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29777 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29778 > Lab/Diorge/Membranes/Fit14-27.cxs"
    29779 
    29780 > select add #124
    29781 
    29782 282 atoms, 283 bonds, 36 residues, 1 model selected 
    29783 
    29784 > select subtract #124
    29785 
    29786 Nothing selected 
    29787 
    29788 > select add #118
    29789 
    29790 1002 atoms, 1001 bonds, 1 pseudobond, 129 residues, 2 models selected 
    29791 
    29792 > view matrix models
    29793 > #118,0.92302,-0.085924,-0.37504,106.62,0.09897,0.99497,0.015624,26.307,0.37181,-0.051538,0.92688,-49.571
    29794 
    29795 > select clear
    29796 
    29797 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29798 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29799 > Lab/Diorge/Membranes/Fit14-27.cxs"
    29800 
    29801 ——— End of log from Fri Jan 12 07:27:46 2024 ———
    29802 
    29803 opened ChimeraX session 
    29804 
    29805 > show #!1 models
    29806 
    29807 > hide #!1 models
    29808 
    29809 > show #!4 models
    29810 
    29811 > ui tool show "Color Zone"
    29812 
    29813 > hide #!4 models
    29814 
    29815 > hide #!8 models
    29816 
    29817 > select clear
    29818 
    29819 Drag select of 825 residues, 5 pseudobonds 
    29820 
    29821 > show #!7 models
    29822 
    29823 > hide #!7 models
    29824 
    29825 > show #!4 models
    29826 
    29827 > color zone #4 near sel distance 9.04
    29828 
    29829 > volume splitbyzone #4
    29830 
    29831 Opened post266flipy.mrc 0 as #126.1, grid size 274,274,274, pixel 1.51, shown
    29832 at level 0.0209, step 1, values float32 
    29833 Opened post266flipy.mrc 1 as #126.2, grid size 274,274,274, pixel 1.51, shown
    29834 at level 0.0209, step 1, values float32 
    29835 Opened post266flipy.mrc 2 as #126.3, grid size 274,274,274, pixel 1.51, shown
    29836 at level 0.0209, step 1, values float32 
    29837 Opened post266flipy.mrc 3 as #126.4, grid size 274,274,274, pixel 1.51, shown
    29838 at level 0.0209, step 1, values float32 
    29839 Opened post266flipy.mrc 4 as #126.5, grid size 274,274,274, pixel 1.51, shown
    29840 at level 0.0209, step 1, values float32 
    29841 Opened post266flipy.mrc 5 as #126.6, grid size 274,274,274, pixel 1.51, shown
    29842 at level 0.0209, step 1, values float32 
    29843 
    29844 > hide #!126 models
    29845 
    29846 > hide #!126.1 models
    29847 
    29848 > volume #126.6 level 0.01818
    29849 
    29850 > show #!126 models
    29851 
    29852 > close #126
    29853 
    29854 > color (#!117-125 & sel) orange red
    29855 
    29856 > show #!4 models
    29857 
    29858 > color zone #4 near sel distance 9.04
    29859 
    29860 > color zone #4 near sel distance 8.96
    29861 
    29862 > color zone #4 near sel distance 4.06
    29863 
    29864 > volume splitbyzone #4
    29865 
    29866 Opened post266flipy.mrc 0 as #126.1, grid size 274,274,274, pixel 1.51, shown
    29867 at level 0.0209, step 1, values float32 
    29868 Opened post266flipy.mrc 1 as #126.2, grid size 274,274,274, pixel 1.51, shown
    29869 at level 0.0209, step 1, values float32 
    29870 
    29871 > hide #!126.1 models
    29872 
    29873 > color sel bychain
    29874 
    29875 > hide #!126 models
    29876 
    29877 > show #!9 models
    29878 
    29879 > hide #!9 models
    29880 
    29881 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29882 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29883 > Lab/Diorge/Membranes/Fit14-27-1.pdb" #117 fromat pdb
    29884 
    29885 Expected a keyword 
    29886 
    29887 > select ~sel & ##selected
    29888 
    29889 Nothing selected 
    29890 
    29891 > select ~sel & ##selected
    29892 
    29893 Nothing selected 
    29894 
    29895 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29896 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29897 > Lab/Diorge/Membranes/Fit14-27-1.pdb" #117 format pdb
    29898 
    29899 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29900 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29901 > Lab/Diorge/Membranes/Fit14-27-2.pdb" #118 format pdb
    29902 
    29903 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29904 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29905 > Lab/Diorge/Membranes/Fit14-27-3.pdb" #119 format pdb
    29906 
    29907 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29908 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29909 > Lab/Diorge/Membranes/Fit14-27-4.pdb" #120 format pdb
    29910 
    29911 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29912 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29913 > Lab/Diorge/Membranes/Fit14-27-6.pdb" #121 format pdb
    29914 
    29915 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29916 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29917 > Lab/Diorge/Membranes/Fit14-27-5.pdb" #121 format pdb
    29918 
    29919 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29920 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29921 > Lab/Diorge/Membranes/Fit14-27-5.pdb" #122 format pdb
    29922 
    29923 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29924 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29925 > Lab/Diorge/Membranes/Fit14-27-5.pdb" #121 format pdb
    29926 
    29927 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29928 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29929 > Lab/Diorge/Membranes/Fit14-27-6.pdb" #122 format pdb
    29930 
    29931 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29932 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29933 > Lab/Diorge/Membranes/Fit14-27-7.pdb" #123 format pdb
    29934 
    29935 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29936 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29937 > Lab/Diorge/Membranes/Fit14-27-8.pdb" #124 format pdb
    29938 
    29939 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29940 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29941 > Lab/Diorge/Membranes/Fit14-27-8.pdb" #125 format pdb
    29942 
    29943 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29944 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29945 > Lab/Diorge/Membranes/Fit14-27-8.pdb" #124 format pdb
    29946 
    29947 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    29948 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29949 > Lab/Diorge/Membranes/Fit14-27-9.pdb" #125 format pdb
    29950 
    29951 > show #!8 models
    29952 
    29953 > select add #8
    29954 
    29955 2 models selected 
    29956 
    29957 > color #8.1 light gray
    29958 
    29959 > transparency #8.1 50
    29960 
    29961 > select clear
    29962 
    29963 > select add #8
    29964 
    29965 2 models selected 
    29966 
    29967 > select subtract #8
    29968 
    29969 Nothing selected 
    29970 
    29971 > hide #!8 models
    29972 
    29973 Drag select of 825 residues, 5 pseudobonds 
    29974 
    29975 > show #!8 models
    29976 
    29977 > color zone #8 near sel distance 9.04
    29978 
    29979 > select #8
    29980 
    29981 2 models selected 
    29982 
    29983 > transparency #8.1 50
    29984 
    29985 > select clear
    29986 
    29987 > ui windowfill toggle
    29988 
    29989 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    29990 > MRCLaboratoryofMolecularBiology/Documents/Carter
    29991 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine2.pdb"
    29992 
    29993 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    29994 MRCLaboratoryofMolecularBiology/Documents/Carter
    29995 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine2.pdb 
    29996 --- 
    29997 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    29998 LEU 0 142 1 25 
    29999 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    30000 1 5 
    30001 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    30002 as basis for sequence. 
    30003  
    30004 Chain information for Fit14-27-1-stitchedtemp3-lightrefine2.pdb #127 
    30005 --- 
    30006 Chain | Description 
    30007 9 E M | No description available 
    30008 D | No description available 
    30009 I | No description available 
    30010 N O T | No description available 
    30011 U | No description available 
    30012  
    30013 
    30014 > hide #!117-125,127 atoms
    30015 
    30016 > show #!117-125,127 cartoons
    30017 
    30018 > ui windowfill toggle
    30019 
    30020 > close #127
    30021 
    30022 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    30023 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30024 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine2.pdb"
    30025 
    30026 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    30027 MRCLaboratoryofMolecularBiology/Documents/Carter
    30028 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine2.pdb 
    30029 --- 
    30030 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    30031 LEU 0 142 1 25 
    30032 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    30033 1 5 
    30034 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    30035 as basis for sequence. 
    30036  
    30037 Chain information for Fit14-27-1-stitchedtemp3-lightrefine2.pdb #127 
    30038 --- 
    30039 Chain | Description 
    30040 9 E M | No description available 
    30041 D | No description available 
    30042 I | No description available 
    30043 N O T | No description available 
    30044 U | No description available 
    30045  
    30046 
    30047 > hide #!117-125,127 atoms
    30048 
    30049 > show #!117-125,127 cartoons
    30050 
    30051 > hide #!109-125 target m
    30052 
    30053 Drag select of 4 residues 
    30054 
    30055 > delete atoms sel
    30056 
    30057 > delete bonds sel
    30058 
    30059 > kdssp
    30060 
    30061 Unknown command: kdssp 
    30062 
    30063 > ksdssp #127
    30064 
    30065 Unknown command: ksdssp #127 
    30066 
    30067 > color #!127 bychain
    30068 
    30069 [Repeated 2 time(s)]Drag select of 820 residues 
    30070 
    30071 > color zone #8 near sel distance 9.04
    30072 
    30073 > select #8
    30074 
    30075 2 models selected 
    30076 
    30077 > transparency #8.1 50
    30078 
    30079 > select clear
    30080 
    30081 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    30082 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30083 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine3.pdb"
    30084 
    30085 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    30086 MRCLaboratoryofMolecularBiology/Documents/Carter
    30087 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine3.pdb 
    30088 --- 
    30089 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    30090 LEU 0 142 1 25 
    30091 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    30092 1 5 
    30093 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    30094 as basis for sequence. 
    30095  
    30096 Chain information for Fit14-27-1-stitchedtemp3-lightrefine3.pdb #128 
    30097 --- 
    30098 Chain | Description 
    30099 9 E M | No description available 
    30100 D | No description available 
    30101 I | No description available 
    30102 N O T | No description available 
    30103 U | No description available 
    30104  
    30105 
    30106 > hide #!127 models
    30107 
    30108 > hide #!128 atoms
    30109 
    30110 > show #!128 cartoons
    30111 
    30112 > color #!128 bychain
    30113 
    30114 > close #127-128
    30115 
    30116 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    30117 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30118 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4.pdb"
    30119 
    30120 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    30121 MRCLaboratoryofMolecularBiology/Documents/Carter
    30122 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4.pdb 
    30123 --- 
    30124 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    30125 LEU 0 142 1 25 
    30126 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    30127 1 5 
    30128 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    30129 as basis for sequence. 
    30130  
    30131 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4.pdb #127 
    30132 --- 
    30133 Chain | Description 
    30134 9 E M | No description available 
    30135 D | No description available 
    30136 I | No description available 
    30137 N O T | No description available 
    30138 U | No description available 
    30139  
    30140 
    30141 > hide #!127 atoms
    30142 
    30143 > show #!127 cartoons
    30144 
    30145 > color #!127 bychain
    30146 
    30147 [Repeated 1 time(s)]
    30148 
    30149 > color zone #8 near #127 distance 9.04
    30150 
    30151 > volume splitbyzone #8
    30152 
    30153 Opened postprocess_masked330_onepf.mrc 0 as #128.1, grid size 274,274,274,
    30154 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30155 Opened postprocess_masked330_onepf.mrc 1 as #128.2, grid size 274,274,274,
    30156 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30157 Opened postprocess_masked330_onepf.mrc 2 as #128.3, grid size 274,274,274,
    30158 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30159 Opened postprocess_masked330_onepf.mrc 3 as #128.4, grid size 274,274,274,
    30160 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30161 Opened postprocess_masked330_onepf.mrc 4 as #128.5, grid size 274,274,274,
    30162 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30163 Opened postprocess_masked330_onepf.mrc 5 as #128.6, grid size 274,274,274,
    30164 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30165 Opened postprocess_masked330_onepf.mrc 6 as #128.7, grid size 274,274,274,
    30166 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30167 Opened postprocess_masked330_onepf.mrc 7 as #128.8, grid size 274,274,274,
    30168 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30169 Opened postprocess_masked330_onepf.mrc 8 as #128.9, grid size 274,274,274,
    30170 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30171 Opened postprocess_masked330_onepf.mrc 9 as #128.10, grid size 274,274,274,
    30172 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30173 
    30174 > hide #!128.9 models
    30175 
    30176 > hide #!128.8 models
    30177 
    30178 > hide #!128.7 models
    30179 
    30180 > hide #!128.6 models
    30181 
    30182 > hide #!128.5 models
    30183 
    30184 > hide #!128.4 models
    30185 
    30186 > hide #!128.3 models
    30187 
    30188 > hide #!128 models
    30189 
    30190 > show #!128 models
    30191 
    30192 > hide #!128.1 models
    30193 
    30194 > hide #!128.2 models
    30195 
    30196 > show #!115 models
    30197 
    30198 > hide #!115 models
    30199 
    30200 > show #!105 models
    30201 
    30202 > matchmaker \105/6 to \127/U
    30203 
    30204 Missing or invalid "matchAtoms" argument: invalid atoms specifier 
    30205 
    30206 > matchmaker #105/6 to #127/U
    30207 
    30208 Parameters 
    30209 --- 
    30210 Chain pairing | bb 
    30211 Alignment algorithm | Needleman-Wunsch 
    30212 Similarity matrix | BLOSUM-62 
    30213 SS fraction | 0.3 
    30214 Gap open (HH/SS/other) | 18/18/6 
    30215 Gap extend | 1 
    30216 SS matrix |  |  | H | S | O 
    30217 ---|---|---|--- 
    30218 H | 6 | -9 | -6 
    30219 S |  | 6 | -6 
    30220 O |  |  | 4 
    30221 Iteration cutoff | 2 
    30222  
    30223 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30224 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 707.1 
    30225 RMSD between 73 pruned atom pairs is 0.586 angstroms; (across all 139 pairs:
    30226 8.194) 
    30227  
    30228 
    30229 > select #128.10
    30230 
    30231 2 models selected 
    30232 
    30233 > transparency #128.10.1 50
    30234 
    30235 > select clear
    30236 
    30237 Drag select of 128.10 postprocess_masked330_onepf.mrc 9 , 14 residues 
    30238 
    30239 > select #128.10
    30240 
    30241 2 models selected 
    30242 
    30243 > select clear
    30244 
    30245 > select ~sel & ##selected
    30246 
    30247 Nothing selected 
    30248 
    30249 > select ~sel & ##selected
    30250 
    30251 Nothing selected 
    30252 
    30253 > matchmaker #105/6:104-140 to #127/U:104-140
    30254 
    30255 Parameters 
    30256 --- 
    30257 Chain pairing | bb 
    30258 Alignment algorithm | Needleman-Wunsch 
    30259 Similarity matrix | BLOSUM-62 
    30260 SS fraction | 0.3 
    30261 Gap open (HH/SS/other) | 18/18/6 
    30262 Gap extend | 1 
    30263 SS matrix |  |  | H | S | O 
    30264 ---|---|---|--- 
    30265 H | 6 | -9 | -6 
    30266 S |  | 6 | -6 
    30267 O |  |  | 4 
    30268 Iteration cutoff | 2 
    30269  
    30270 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30271 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 177.7 
    30272 RMSD between 25 pruned atom pairs is 0.722 angstroms; (across all 37 pairs:
    30273 3.228) 
    30274  
    30275 
    30276 > matchmaker #105/6:90-140 to #127/U:90-140
    30277 
    30278 Parameters 
    30279 --- 
    30280 Chain pairing | bb 
    30281 Alignment algorithm | Needleman-Wunsch 
    30282 Similarity matrix | BLOSUM-62 
    30283 SS fraction | 0.3 
    30284 Gap open (HH/SS/other) | 18/18/6 
    30285 Gap extend | 1 
    30286 SS matrix |  |  | H | S | O 
    30287 ---|---|---|--- 
    30288 H | 6 | -9 | -6 
    30289 S |  | 6 | -6 
    30290 O |  |  | 4 
    30291 Iteration cutoff | 2 
    30292  
    30293 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30294 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 248.4 
    30295 RMSD between 24 pruned atom pairs is 0.635 angstroms; (across all 51 pairs:
    30296 5.850) 
    30297  
    30298 
    30299 > matchmaker #105/6:90-120 to #127/U:90-120
    30300 
    30301 Parameters 
    30302 --- 
    30303 Chain pairing | bb 
    30304 Alignment algorithm | Needleman-Wunsch 
    30305 Similarity matrix | BLOSUM-62 
    30306 SS fraction | 0.3 
    30307 Gap open (HH/SS/other) | 18/18/6 
    30308 Gap extend | 1 
    30309 SS matrix |  |  | H | S | O 
    30310 ---|---|---|--- 
    30311 H | 6 | -9 | -6 
    30312 S |  | 6 | -6 
    30313 O |  |  | 4 
    30314 Iteration cutoff | 2 
    30315  
    30316 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30317 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 143.8 
    30318 RMSD between 23 pruned atom pairs is 0.781 angstroms; (across all 31 pairs:
    30319 2.936) 
    30320  
    30321 
    30322 > matchmaker #105/6:90-130 to #127/U:90-130
    30323 
    30324 Parameters 
    30325 --- 
    30326 Chain pairing | bb 
    30327 Alignment algorithm | Needleman-Wunsch 
    30328 Similarity matrix | BLOSUM-62 
    30329 SS fraction | 0.3 
    30330 Gap open (HH/SS/other) | 18/18/6 
    30331 Gap extend | 1 
    30332 SS matrix |  |  | H | S | O 
    30333 ---|---|---|--- 
    30334 H | 6 | -9 | -6 
    30335 S |  | 6 | -6 
    30336 O |  |  | 4 
    30337 Iteration cutoff | 2 
    30338  
    30339 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30340 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 195.4 
    30341 RMSD between 22 pruned atom pairs is 0.704 angstroms; (across all 41 pairs:
    30342 5.102) 
    30343  
    30344 
    30345 > matchmaker #105/6:94-130 to #127/U:94-130
    30346 
    30347 Parameters 
    30348 --- 
    30349 Chain pairing | bb 
    30350 Alignment algorithm | Needleman-Wunsch 
    30351 Similarity matrix | BLOSUM-62 
    30352 SS fraction | 0.3 
    30353 Gap open (HH/SS/other) | 18/18/6 
    30354 Gap extend | 1 
    30355 SS matrix |  |  | H | S | O 
    30356 ---|---|---|--- 
    30357 H | 6 | -9 | -6 
    30358 S |  | 6 | -6 
    30359 O |  |  | 4 
    30360 Iteration cutoff | 2 
    30361  
    30362 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30363 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 174.9 
    30364 RMSD between 18 pruned atom pairs is 0.729 angstroms; (across all 37 pairs:
    30365 5.288) 
    30366  
    30367 
    30368 > matchmaker #105/6:100-130 to #127/U:100-130
    30369 
    30370 Parameters 
    30371 --- 
    30372 Chain pairing | bb 
    30373 Alignment algorithm | Needleman-Wunsch 
    30374 Similarity matrix | BLOSUM-62 
    30375 SS fraction | 0.3 
    30376 Gap open (HH/SS/other) | 18/18/6 
    30377 Gap extend | 1 
    30378 SS matrix |  |  | H | S | O 
    30379 ---|---|---|--- 
    30380 H | 6 | -9 | -6 
    30381 S |  | 6 | -6 
    30382 O |  |  | 4 
    30383 Iteration cutoff | 2 
    30384  
    30385 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30386 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 145.2 
    30387 RMSD between 13 pruned atom pairs is 0.964 angstroms; (across all 31 pairs:
    30388 3.840) 
    30389  
    30390 
    30391 > matchmaker #105/6:100-140 to #127/U:100-140
    30392 
    30393 Parameters 
    30394 --- 
    30395 Chain pairing | bb 
    30396 Alignment algorithm | Needleman-Wunsch 
    30397 Similarity matrix | BLOSUM-62 
    30398 SS fraction | 0.3 
    30399 Gap open (HH/SS/other) | 18/18/6 
    30400 Gap extend | 1 
    30401 SS matrix |  |  | H | S | O 
    30402 ---|---|---|--- 
    30403 H | 6 | -9 | -6 
    30404 S |  | 6 | -6 
    30405 O |  |  | 4 
    30406 Iteration cutoff | 2 
    30407  
    30408 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30409 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 198.2 
    30410 RMSD between 24 pruned atom pairs is 0.635 angstroms; (across all 41 pairs:
    30411 3.786) 
    30412  
    30413 
    30414 > matchmaker #105/6:100-135 to #127/U:100-135
    30415 
    30416 Parameters 
    30417 --- 
    30418 Chain pairing | bb 
    30419 Alignment algorithm | Needleman-Wunsch 
    30420 Similarity matrix | BLOSUM-62 
    30421 SS fraction | 0.3 
    30422 Gap open (HH/SS/other) | 18/18/6 
    30423 Gap extend | 1 
    30424 SS matrix |  |  | H | S | O 
    30425 ---|---|---|--- 
    30426 H | 6 | -9 | -6 
    30427 S |  | 6 | -6 
    30428 O |  |  | 4 
    30429 Iteration cutoff | 2 
    30430  
    30431 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30432 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 171.7 
    30433 RMSD between 19 pruned atom pairs is 0.497 angstroms; (across all 36 pairs:
    30434 4.239) 
    30435  
    30436 
    30437 > matchmaker #105/6:96-135 to #127/U:96-135
    30438 
    30439 Parameters 
    30440 --- 
    30441 Chain pairing | bb 
    30442 Alignment algorithm | Needleman-Wunsch 
    30443 Similarity matrix | BLOSUM-62 
    30444 SS fraction | 0.3 
    30445 Gap open (HH/SS/other) | 18/18/6 
    30446 Gap extend | 1 
    30447 SS matrix |  |  | H | S | O 
    30448 ---|---|---|--- 
    30449 H | 6 | -9 | -6 
    30450 S |  | 6 | -6 
    30451 O |  |  | 4 
    30452 Iteration cutoff | 2 
    30453  
    30454 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30455 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 191.5 
    30456 RMSD between 18 pruned atom pairs is 0.484 angstroms; (across all 40 pairs:
    30457 5.045) 
    30458  
    30459 
    30460 > matchmaker #105/6:96-132 to #127/U:96-132
    30461 
    30462 Parameters 
    30463 --- 
    30464 Chain pairing | bb 
    30465 Alignment algorithm | Needleman-Wunsch 
    30466 Similarity matrix | BLOSUM-62 
    30467 SS fraction | 0.3 
    30468 Gap open (HH/SS/other) | 18/18/6 
    30469 Gap extend | 1 
    30470 SS matrix |  |  | H | S | O 
    30471 ---|---|---|--- 
    30472 H | 6 | -9 | -6 
    30473 S |  | 6 | -6 
    30474 O |  |  | 4 
    30475 Iteration cutoff | 2 
    30476  
    30477 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30478 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 175.6 
    30479 RMSD between 13 pruned atom pairs is 0.964 angstroms; (across all 37 pairs:
    30480 4.157) 
    30481  
    30482 
    30483 > matchmaker #105/6:96-133 to #127/U:96-133
    30484 
    30485 Parameters 
    30486 --- 
    30487 Chain pairing | bb 
    30488 Alignment algorithm | Needleman-Wunsch 
    30489 Similarity matrix | BLOSUM-62 
    30490 SS fraction | 0.3 
    30491 Gap open (HH/SS/other) | 18/18/6 
    30492 Gap extend | 1 
    30493 SS matrix |  |  | H | S | O 
    30494 ---|---|---|--- 
    30495 H | 6 | -9 | -6 
    30496 S |  | 6 | -6 
    30497 O |  |  | 4 
    30498 Iteration cutoff | 2 
    30499  
    30500 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30501 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 181.6 
    30502 RMSD between 15 pruned atom pairs is 0.488 angstroms; (across all 38 pairs:
    30503 5.005) 
    30504  
    30505 
    30506 > matchmaker #104/6:96-133 to #104/U:96-133
    30507 
    30508 No 'to' model specified 
    30509 
    30510 > matchmaker #105/6:94-133 to #127/U:94-133
    30511 
    30512 Parameters 
    30513 --- 
    30514 Chain pairing | bb 
    30515 Alignment algorithm | Needleman-Wunsch 
    30516 Similarity matrix | BLOSUM-62 
    30517 SS fraction | 0.3 
    30518 Gap open (HH/SS/other) | 18/18/6 
    30519 Gap extend | 1 
    30520 SS matrix |  |  | H | S | O 
    30521 ---|---|---|--- 
    30522 H | 6 | -9 | -6 
    30523 S |  | 6 | -6 
    30524 O |  |  | 4 
    30525 Iteration cutoff | 2 
    30526  
    30527 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30528 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 191.5 
    30529 RMSD between 16 pruned atom pairs is 1.015 angstroms; (across all 40 pairs:
    30530 4.428) 
    30531  
    30532 
    30533 > matchmaker #105/6:95-133 to #127/U:95-133
    30534 
    30535 Parameters 
    30536 --- 
    30537 Chain pairing | bb 
    30538 Alignment algorithm | Needleman-Wunsch 
    30539 Similarity matrix | BLOSUM-62 
    30540 SS fraction | 0.3 
    30541 Gap open (HH/SS/other) | 18/18/6 
    30542 Gap extend | 1 
    30543 SS matrix |  |  | H | S | O 
    30544 ---|---|---|--- 
    30545 H | 6 | -9 | -6 
    30546 S |  | 6 | -6 
    30547 O |  |  | 4 
    30548 Iteration cutoff | 2 
    30549  
    30550 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30551 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 186.9 
    30552 RMSD between 14 pruned atom pairs is 0.493 angstroms; (across all 39 pairs:
    30553 5.248) 
    30554  
    30555 
    30556 > select ~sel & ##selected
    30557 
    30558 Nothing selected 
    30559 
    30560 > select ~sel & ##selected
    30561 
    30562 Nothing selected 
    30563 
    30564 > matchmaker #105/6:94-133 to #127/U:94-133
    30565 
    30566 Parameters 
    30567 --- 
    30568 Chain pairing | bb 
    30569 Alignment algorithm | Needleman-Wunsch 
    30570 Similarity matrix | BLOSUM-62 
    30571 SS fraction | 0.3 
    30572 Gap open (HH/SS/other) | 18/18/6 
    30573 Gap extend | 1 
    30574 SS matrix |  |  | H | S | O 
    30575 ---|---|---|--- 
    30576 H | 6 | -9 | -6 
    30577 S |  | 6 | -6 
    30578 O |  |  | 4 
    30579 Iteration cutoff | 2 
    30580  
    30581 Matchmaker Fit14-27-1-stitchedtemp3-lightrefine4.pdb, chain U (#127) with copy
    30582 of pointy-1pf.pdb, chain 6 (#105), sequence alignment score = 191.5 
    30583 RMSD between 16 pruned atom pairs is 1.015 angstroms; (across all 40 pairs:
    30584 4.428) 
    30585  
    30586 
    30587 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    30588 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30589 > Lab/Diorge/Membranes/temppf.pdb" relModel #8 format pdb
    30590 
    30591 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    30592 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30593 > Lab/Diorge/Membranes/tempvol.mrc" relModel #8 format mrc
    30594 
    30595 Expected a models specifier or a keyword 
    30596 
    30597 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    30598 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30599 > Lab/Diorge/Membranes/temppf.pdb" #105 relModel #8 format pdb
    30600 
    30601 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    30602 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30603 > Lab/Diorge/Membranes/temppf.pdb" #128.10 relModel #8 format mrc
    30604 
    30605 Expected a keyword 
    30606 
    30607 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    30608 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30609 > Lab/Diorge/Membranes/temppf.mrc" #128.10 relModel #8 format mrc
    30610 
    30611 Expected a keyword 
    30612 
    30613 > close #128.1-9
    30614 
    30615 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    30616 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30617 > Lab/Diorge/Membranes/temppf.mrc" #128 relModel #8 format mrc
    30618 
    30619 Expected a keyword 
    30620 
    30621 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    30622 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30623 > Lab/Diorge/Membranes/temppf.mrc" #128 format mrc
    30624 
    30625 > volume splitbyzone #8
    30626 
    30627 Opened postprocess_masked330_onepf.mrc 0 as #129.1, grid size 274,274,274,
    30628 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30629 Opened postprocess_masked330_onepf.mrc 1 as #129.2, grid size 274,274,274,
    30630 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30631 Opened postprocess_masked330_onepf.mrc 2 as #129.3, grid size 274,274,274,
    30632 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30633 Opened postprocess_masked330_onepf.mrc 3 as #129.4, grid size 274,274,274,
    30634 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30635 Opened postprocess_masked330_onepf.mrc 4 as #129.5, grid size 274,274,274,
    30636 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30637 Opened postprocess_masked330_onepf.mrc 5 as #129.6, grid size 274,274,274,
    30638 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30639 Opened postprocess_masked330_onepf.mrc 6 as #129.7, grid size 274,274,274,
    30640 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30641 Opened postprocess_masked330_onepf.mrc 7 as #129.8, grid size 274,274,274,
    30642 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30643 Opened postprocess_masked330_onepf.mrc 8 as #129.9, grid size 274,274,274,
    30644 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30645 Opened postprocess_masked330_onepf.mrc 9 as #129.10, grid size 274,274,274,
    30646 pixel 1.51, shown at level 0.0121, step 1, values float32 
    30647 
    30648 > hide #!128.10 models
    30649 
    30650 > hide #!129.2 models
    30651 
    30652 > show #!129.2 models
    30653 
    30654 > save "/Users/chaaban/Library/CloudStorage/OneDrive-
    30655 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30656 > Lab/Diorge/Membranes/temppfnext.mrc" #129.2 format mrc
    30657 
    30658 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    30659 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30660 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30661 > alsoneighbour-2.pdb"
    30662 
    30663 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    30664 MRCLaboratoryofMolecularBiology/Documents/Carter
    30665 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30666 alsoneighbour-2.pdb 
    30667 --- 
    30668 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    30669 LEU 0 142 1 25 
    30670 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    30671 1 5 
    30672 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    30673 as basis for sequence. 
    30674  
    30675 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30676 alsoneighbour-2.pdb #130 
    30677 --- 
    30678 Chain | Description 
    30679 6 | No description available 
    30680 9 E M | No description available 
    30681 D | No description available 
    30682 I | No description available 
    30683 N O T | No description available 
    30684  
    30685 
    30686 > hide #!105,127,130 atoms
    30687 
    30688 > show #!105,127,130 cartoons
    30689 
    30690 > hide #!129 models
    30691 
    30692 > hide #!128 models
    30693 
    30694 > hide #!127 models
    30695 
    30696 > hide #!105 models
    30697 
    30698 > show #!9 models
    30699 
    30700 > hide #!9 models
    30701 
    30702 > show #!8 models
    30703 
    30704 > color zone #8 near #130 distance 9.04
    30705 
    30706 > color #!130 bychain
    30707 
    30708 > color zone #8 near #130 distance 9.04
    30709 
    30710 > select #8
    30711 
    30712 2 models selected 
    30713 
    30714 > transparency #8.1 50
    30715 
    30716 > ui windowfill toggle
    30717 
    30718 > select clear
    30719 
    30720 > ui windowfill toggle
    30721 
    30722 [Repeated 1 time(s)]
    30723 
    30724 > ksdssp #130
    30725 
    30726 Unknown command: ksdssp #130 
    30727 
    30728 > kdssp #130
    30729 
    30730 Unknown command: kdssp #130 
    30731 
    30732 > dssp #130
    30733 
    30734 > isolde start
    30735 
    30736 > set selectionWidth 4
    30737 
    30738 Forcefield cache not found or out of date. Regenerating from ffXML files. This
    30739 is normal if running ISOLDE for the first time, or after upgrading OpenMM. 
    30740 
    30741 Done loading forcefield 
    30742 
    30743 > isolde set simFidelityMode Medium/Medium
    30744 
    30745 ISOLDE: setting sim fidelity mode to Medium/Medium 
    30746 nonbonded_cutoff_distance = 0.900000 
    30747 use_gbsa = True 
    30748 gbsa_cutoff = 1.100000 
    30749 
    30750 > clipper associate #8 toModel #2
    30751 
    30752 Opened postprocess_masked330_onepf.mrc as #2.1.1.2, grid size 274,274,274,
    30753 pixel 1.51, shown at step 1, values float32 
    30754 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    30755 chains... 
    30756 ISOLDE: Corrected atom nomenclature of 8 residues in model #130 to IUPAC-IUB
    30757 standards. 
    30758 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30759 alsoneighbour-2.pdb 
    30760 --- 
    30761 Chain | Description 
    30762 8.2/6 | No description available 
    30763 8.2/9 8.2/E 8.2/M | No description available 
    30764 8.2/D | No description available 
    30765 8.2/I | No description available 
    30766 8.2/N 8.2/O 8.2/T | No description available 
    30767  
    30768 
    30769 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    30770 > MRCLaboratoryofMolecularBiology/Documents/Carter
    30771 > Lab/Diorge/Membranes/postprocess_masked330_onepf.mrc"
    30772 
    30773 Opened postprocess_masked330_onepf.mrc as #130, grid size 274,274,274, pixel
    30774 1.51, shown at level 9.42e-06, step 2, values float32 
    30775 
    30776 > clipper associate #130 toModel #8
    30777 
    30778 Opened postprocess_masked330_onepf.mrc as #8.1.1.1, grid size 274,274,274,
    30779 pixel 1.51, shown at step 1, values float32 
    30780 
    30781 > isolde restrain distances "#8.2/6", #8.2/9", #8.2/E", "#8.2/M", "#8.2/D",
    30782 > "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T" templateAtoms "#8.2/6", #8.2/9",
    30783 > #8.2/E", "#8.2/M", "#8.2/D", "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T"
    30784 > distancecutoff 10
    30785 
    30786 Missing or invalid "atoms" argument: only initial part "#8.2/9"" of atom
    30787 specifier valid 
    30788 
    30789 > isolde restrain distances "#8.2/6", "#8.2/9", #8.2/E", "#8.2/M", "#8.2/D",
    30790 > "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T" templateAtoms "#8.2/6", "#8.2/9",
    30791 > #8.2/E", "#8.2/M", "#8.2/D", "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T"
    30792 > distanceCutoff 10
    30793 
    30794 Each atom selection should be from a single chain! 
    30795 
    30796 > isolde restrain distances "#8.2/6", "#8.2/9", #8.2/E", "#8.2/M", "#8.2/D",
    30797 > "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T" templateAtoms "#8.2/6", "#8.2/9",
    30798 > #8.2/E", "#8.2/M", "#8.2/D", "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T"
    30799 > distanceCutoff 10
    30800 
    30801 Each atom selection should be from a single chain! 
    30802 
    30803 > isolde restrain distances "#8/6", "#8/9", #8/E", "#8/M", "#8/D", "#8/I",
    30804 > "#8/N", "#8/O", "#8/T" templateAtoms "#8/6", "#8/9", #8/E", "#8/M", "#8/D",
    30805 > "#8/I", "#8/N", "#8/O", "#8/T" distanceCutoff 10
    30806 
    30807 Each atom selection should be from a single chain! 
    30808 
    30809 > hide #!8.2 models
    30810 
    30811 > show #!8.2 models
    30812 
    30813 > isolde restrain distances "#8.2/6", "#8.2/9", "#8.2/E", "#8.2/M", "#8.2/D",
    30814 > "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T" templateAtoms "#8.2/6", "#8.2/9",
    30815 > "#8.2/E", "#8.2/M", "#8.2/D", "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T"
    30816 > distanceCutoff 10
    30817 
    30818 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    30819 chains... 
    30820 
    30821 > isolde sim start #8.2/D,I-T,9,E,6
    30822 
    30823 Sim termination reason: None 
    30824 ISOLDE: stopped sim 
    30825 
    30826 > addh #8.2
    30827 
    30828 Summary of feedback from adding hydrogens to
    30829 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2 
    30830 --- 
    30831 notes | No usable SEQRES records for
    30832 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb (#8.2)
    30833 chain 6; guessing termini instead 
    30834 No usable SEQRES records for
    30835 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb (#8.2)
    30836 chain 9; guessing termini instead 
    30837 No usable SEQRES records for
    30838 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb (#8.2)
    30839 chain D; guessing termini instead 
    30840 No usable SEQRES records for
    30841 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb (#8.2)
    30842 chain E; guessing termini instead 
    30843 Termini for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30844 alsoneighbour-2.pdb (#8.2) chain I determined from SEQRES records 
    30845 No usable SEQRES records for
    30846 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb (#8.2)
    30847 chain M; guessing termini instead 
    30848 No usable SEQRES records for
    30849 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb (#8.2)
    30850 chain N; guessing termini instead 
    30851 No usable SEQRES records for
    30852 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb (#8.2)
    30853 chain O; guessing termini instead 
    30854 No usable SEQRES records for
    30855 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb (#8.2)
    30856 chain T; guessing termini instead 
    30857 Chain-initial residues that are actual N termini:
    30858 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/6
    30859 LYS 3, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb
    30860 #8.2/9 LYS 3, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30861 alsoneighbour-2.pdb #8.2/D LYS 3,
    30862 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/E
    30863 LYS 3, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb
    30864 #8.2/M LYS 3, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30865 alsoneighbour-2.pdb #8.2/N SER 117,
    30866 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/O
    30867 SER 117, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30868 alsoneighbour-2.pdb #8.2/T SER 117,
    30869 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/D
    30870 LYS 3, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb
    30871 #8.2/D GLY 53, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30872 alsoneighbour-2.pdb #8.2/M LYS 3,
    30873 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/M
    30874 GLY 53, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb
    30875 #8.2/N SER 117, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30876 alsoneighbour-2.pdb #8.2/O SER 117,
    30877 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/T
    30878 SER 117, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30879 alsoneighbour-2.pdb #8.2/9 LYS 3,
    30880 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/9
    30881 GLY 53, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb
    30882 #8.2/E LYS 3, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30883 alsoneighbour-2.pdb #8.2/E GLY 53,
    30884 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/6
    30885 LYS 3, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb
    30886 #8.2/6 GLY 53 
    30887 Chain-initial residues that are not actual N termini:
    30888 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/6
    30889 GLY 53, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb
    30890 #8.2/9 GLY 53, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30891 alsoneighbour-2.pdb #8.2/D GLY 53,
    30892 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/E
    30893 GLY 53, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb
    30894 #8.2/I GLU 155, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30895 alsoneighbour-2.pdb #8.2/M GLY 53 
    30896 Chain-final residues that are actual C termini:
    30897 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/I
    30898 GLU 170, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30899 alsoneighbour-2.pdb #8.2/D MET 49,
    30900 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/D
    30901 GLU 170, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30902 alsoneighbour-2.pdb #8.2/M MET 49,
    30903 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/M
    30904 VAL 116, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30905 alsoneighbour-2.pdb #8.2/N GLU 170,
    30906 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/O
    30907 GLU 170, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30908 alsoneighbour-2.pdb #8.2/T GLU 170,
    30909 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/9
    30910 MET 49, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb
    30911 #8.2/9 VAL 116, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30912 alsoneighbour-2.pdb #8.2/E MET 49,
    30913 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/E
    30914 VAL 116, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30915 alsoneighbour-2.pdb #8.2/6 MET 49,
    30916 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/6
    30917 GLU 149 
    30918 Chain-final residues that are not actual C termini:
    30919 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/6
    30920 GLU 149, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30921 alsoneighbour-2.pdb #8.2/6 MET 49,
    30922 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/9
    30923 VAL 116, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30924 alsoneighbour-2.pdb #8.2/9 MET 49,
    30925 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/D
    30926 GLU 170, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30927 alsoneighbour-2.pdb #8.2/D MET 49,
    30928 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/E
    30929 VAL 116, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30930 alsoneighbour-2.pdb #8.2/E MET 49,
    30931 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/M
    30932 VAL 116, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30933 alsoneighbour-2.pdb #8.2/M MET 49,
    30934 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/N
    30935 GLU 170, Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30936 alsoneighbour-2.pdb #8.2/O GLU 170,
    30937 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/T
    30938 GLU 170 
    30939 Missing OXT added to C-terminal residue
    30940 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/I
    30941 GLU 170 
    30942 Missing OXT added to C-terminal residue
    30943 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/D
    30944 MET 49 
    30945 Missing OXT added to C-terminal residue
    30946 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/D
    30947 GLU 170 
    30948 Missing OXT added to C-terminal residue
    30949 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/M
    30950 MET 49 
    30951 Missing OXT added to C-terminal residue
    30952 Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-alsoneighbour-2.pdb #8.2/M
    30953 VAL 116 
    30954 9 messages similar to the above omitted 
    30955 805 hydrogen bonds 
    30956 Adding 'H' to Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30957 alsoneighbour-2.pdb #8.2/6 GLY 53 
    30958 Adding 'H' to Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30959 alsoneighbour-2.pdb #8.2/9 GLY 53 
    30960 Adding 'H' to Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30961 alsoneighbour-2.pdb #8.2/D GLY 53 
    30962 Adding 'H' to Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30963 alsoneighbour-2.pdb #8.2/E GLY 53 
    30964 Adding 'H' to Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    30965 alsoneighbour-2.pdb #8.2/I GLU 155 
    30966 1 messages similar to the above omitted 
    30967 6498 hydrogens added 
    30968  
    30969 
    30970 > isolde sim start #8.2/D,I-T,9,E,6
    30971 
    30972 ISOLDE: started sim 
    30973 
    30974 > hide sel atoms
    30975 
    30976 > show sel cartoons
    30977 
    30978 > ui windowfill toggle
    30979 
    30980 > isolde sim stop discardTo start
    30981 
    30982 Sim termination reason: None 
    30983 reverting to start 
    30984 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    30985 chains... 
    30986 ISOLDE: stopped sim 
    30987 
    30988 > isolde restrain distances "#8.2/6", "#8.2/9", "#8.2/E", "#8.2/M", "#8.2/D",
    30989 > "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T" templateAtoms "#8.2/6", "#8.2/9",
    30990 > "#8.2/E", "#8.2/M", "#8.2/D", "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T"
    30991 > distanceCutoff 5
    30992 
    30993 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    30994 chains... 
    30995 
    30996 > close #8.2.8
    30997 
    30998 > isolde restrain distances "#8.2/6", "#8.2/9", "#8.2/E", "#8.2/M", "#8.2/D",
    30999 > "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T" templateAtoms "#8.2/6", "#8.2/9",
    31000 > "#8.2/E", "#8.2/M", "#8.2/D", "#8.2/I", "#8.2/N", "#8.2/O", "#8.2/T"
    31001 > distanceCutoff 5
    31002 
    31003 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    31004 chains... 
    31005 
    31006 > isolde sim start #8.2/D,I-T,9,E,6
    31007 
    31008 ISOLDE: started sim 
    31009 
    31010 > hide sel atoms
    31011 
    31012 > show sel cartoons
    31013 
    31014 > isolde sim stop discardTo start
    31015 
    31016 Sim termination reason: None 
    31017 reverting to start 
    31018 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    31019 chains... 
    31020 ISOLDE: stopped sim 
    31021 
    31022 > select subtract #8.2/N:117-143
    31023 
    31024 12478 atoms, 12502 bonds, 793 residues, 2 models selected 
    31025 
    31026 > isolde sim start #8.2/D,I-M,O-T,9,E,6/N:144-170
    31027 
    31028 ISOLDE: started sim 
    31029 
    31030 > hide sel atoms
    31031 
    31032 > show sel cartoons
    31033 
    31034 > isolde sim stop
    31035 
    31036 Sim termination reason: None 
    31037 ISOLDE: Checking and correcting nomenclature for (pseudo)symmetric side
    31038 chains... 
    31039 ISOLDE: Corrected atom nomenclature of 11 residues in model #8.2 to IUPAC-IUB
    31040 standards. 
    31041 ISOLDE: stopped sim 
    31042 
    31043 > select clear
    31044 
    31045 > hide #!8.2 atoms
    31046 
    31047 > show #!8.2 cartoons
    31048 
    31049 [Repeated 1 time(s)]
    31050 
    31051 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31052 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31053 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31054 > alsoneighbour-2.pdb"
    31055 
    31056 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    31057 MRCLaboratoryofMolecularBiology/Documents/Carter
    31058 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31059 alsoneighbour-2.pdb 
    31060 --- 
    31061 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    31062 LEU 0 142 1 25 
    31063 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    31064 1 5 
    31065 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    31066 as basis for sequence. 
    31067  
    31068 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31069 alsoneighbour-2.pdb #130 
    31070 --- 
    31071 Chain | Description 
    31072 6 | No description available 
    31073 9 E M | No description available 
    31074 D | No description available 
    31075 I | No description available 
    31076 N O T | No description available 
    31077  
    31078 
    31079 > hide #!130#!8.2 atoms
    31080 
    31081 > hide #!130#!8.2 cartoons
    31082 
    31083 > show #!130#!8.2 cartoons
    31084 
    31085 > ui windowfill toggle
    31086 
    31087 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31088 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31089 > Lab/Diorge/Membranes/postprocess_masked330_onepf.mrc"
    31090 
    31091 Opened postprocess_masked330_onepf.mrc as #131, grid size 274,274,274, pixel
    31092 1.51, shown at level 9.42e-06, step 2, values float32 
    31093 
    31094 > volume #131 level 0.01334
    31095 
    31096 > volume #131 step 1
    31097 
    31098 > select clear
    31099 
    31100 [Repeated 1 time(s)]
    31101 
    31102 > select add #131
    31103 
    31104 2 models selected 
    31105 
    31106 > transparency #131.1 50
    31107 
    31108 > select subtract #131
    31109 
    31110 Nothing selected 
    31111 
    31112 > ui windowfill toggle
    31113 
    31114 [Repeated 1 time(s)]
    31115 
    31116 > volume #131 level 0.02878
    31117 
    31118 > volume #131 level 0.02026
    31119 
    31120 > volume #131 level 0.01813
    31121 
    31122 > hide #!130 models
    31123 
    31124 > hide #!131 models
    31125 
    31126 > show #!7 models
    31127 
    31128 > volume #7 level 0.01481
    31129 
    31130 > hide #!7 models
    31131 
    31132 > show #!131 models
    31133 
    31134 > volume #131 level 0.006285
    31135 
    31136 > volume #131 level 0.01414
    31137 
    31138 > hide #!131 models
    31139 
    31140 > show #!131 models
    31141 
    31142 > volume #131 level 0.005486
    31143 
    31144 > hide #!131 models
    31145 
    31146 > show #!131 models
    31147 
    31148 > volume #131 level 0.01148
    31149 
    31150 > volume #131 level 0.01574
    31151 
    31152 > ui windowfill toggle
    31153 
    31154 [Repeated 1 time(s)]
    31155 
    31156 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31157 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31158 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31159 > alsoneighbour-2-refined-2-fixcrosshelix-3-refined.pdb"
    31160 
    31161 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    31162 MRCLaboratoryofMolecularBiology/Documents/Carter
    31163 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31164 alsoneighbour-2-refined-2-fixcrosshelix-3-refined.pdb 
    31165 --- 
    31166 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    31167 LEU 0 142 1 25 
    31168 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    31169 1 5 
    31170 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    31171 as basis for sequence. 
    31172  
    31173 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31174 alsoneighbour-2-refined-2-fixcrosshelix-3-refined.pdb #132 
    31175 --- 
    31176 Chain | Description 
    31177 6 | No description available 
    31178 9 M | No description available 
    31179 D | No description available 
    31180 E | No description available 
    31181 I | No description available 
    31182 N O T | No description available 
    31183  
    31184 
    31185 > hide #!132#!8.2 atoms
    31186 
    31187 > show #!132#!8.2 cartoons
    31188 
    31189 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31190 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31191 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31192 > alsoneighbour-2-refined-2-fixcrosshelix-3-refined-2.pdb"
    31193 
    31194 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    31195 MRCLaboratoryofMolecularBiology/Documents/Carter
    31196 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31197 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-2.pdb 
    31198 --- 
    31199 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    31200 LEU 0 142 1 25 
    31201 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    31202 1 5 
    31203 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    31204 as basis for sequence. 
    31205  
    31206 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31207 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-2.pdb #133 
    31208 --- 
    31209 Chain | Description 
    31210 6 | No description available 
    31211 9 M | No description available 
    31212 D | No description available 
    31213 E | No description available 
    31214 I | No description available 
    31215 N O T | No description available 
    31216  
    31217 
    31218 > hide #!132-133#!8.2 atoms
    31219 
    31220 > show #!132-133#!8.2 cartoons
    31221 
    31222 > hide #!131 models
    31223 
    31224 > show #!131 models
    31225 
    31226 > hide #!132 models
    31227 
    31228 > show #!132 models
    31229 
    31230 > hide #!133 models
    31231 
    31232 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31233 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31234 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31235 > alsoneighbour-2-refined-2-fixcrosshelix-3-refined-2.pdb"
    31236 
    31237 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    31238 MRCLaboratoryofMolecularBiology/Documents/Carter
    31239 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31240 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-2.pdb 
    31241 --- 
    31242 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    31243 LEU 0 142 1 25 
    31244 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    31245 1 5 
    31246 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    31247 as basis for sequence. 
    31248  
    31249 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31250 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-2.pdb #134 
    31251 --- 
    31252 Chain | Description 
    31253 6 | No description available 
    31254 9 M | No description available 
    31255 D | No description available 
    31256 E | No description available 
    31257 I | No description available 
    31258 N O T | No description available 
    31259  
    31260 
    31261 > hide #!132,134#!8.2 atoms
    31262 
    31263 > show #!132,134#!8.2 cartoons
    31264 
    31265 > hide #!132 models
    31266 
    31267 > hide #!131 models
    31268 
    31269 > show #!131 models
    31270 
    31271 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31272 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31273 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31274 > alsoneighbour-2-refined-2-fixcrosshelix-3-refined-3.pdb"
    31275 
    31276 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    31277 MRCLaboratoryofMolecularBiology/Documents/Carter
    31278 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31279 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-3.pdb 
    31280 --- 
    31281 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    31282 LEU 0 142 1 25 
    31283 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    31284 1 5 
    31285 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    31286 as basis for sequence. 
    31287  
    31288 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31289 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-3.pdb #135 
    31290 --- 
    31291 Chain | Description 
    31292 6 | No description available 
    31293 9 M | No description available 
    31294 A | No description available 
    31295 D | No description available 
    31296 E | No description available 
    31297 N O T | No description available 
    31298  
    31299 
    31300 > hide #!134-135#!8.2 atoms
    31301 
    31302 > show #!134-135#!8.2 cartoons
    31303 
    31304 [Repeated 1 time(s)]
    31305 
    31306 > hide #!134 models
    31307 
    31308 > ui windowfill toggle
    31309 
    31310 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31311 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31312 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31313 > alsoneighbour-2-refined-2-fixcrosshelix-3-refined-3.pdb"
    31314 
    31315 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    31316 MRCLaboratoryofMolecularBiology/Documents/Carter
    31317 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31318 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-3.pdb 
    31319 --- 
    31320 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    31321 LEU 0 142 1 25 
    31322 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    31323 1 5 
    31324 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    31325 as basis for sequence. 
    31326  
    31327 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31328 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-3.pdb #136 
    31329 --- 
    31330 Chain | Description 
    31331 6 | No description available 
    31332 9 M | No description available 
    31333 D | No description available 
    31334 E | No description available 
    31335 I | No description available 
    31336 N O T | No description available 
    31337  
    31338 
    31339 > hide #!135-136#!8.2 atoms
    31340 
    31341 > show #!135-136#!8.2 cartoons
    31342 
    31343 > ui windowfill toggle
    31344 
    31345 > hide #!135 models
    31346 
    31347 > show #!135 models
    31348 
    31349 > hide #!135 models
    31350 
    31351 > show #!135 models
    31352 
    31353 > hide #!135 models
    31354 
    31355 > show #!135 models
    31356 
    31357 > hide #!135 models
    31358 
    31359 > show #!135 models
    31360 
    31361 > hide #!135 models
    31362 
    31363 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31364 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31365 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31366 > alsoneighbour-2-refined-2-fixcrosshelix-3-refined-4.pdb"
    31367 
    31368 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    31369 MRCLaboratoryofMolecularBiology/Documents/Carter
    31370 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31371 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-4.pdb 
    31372 --- 
    31373 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    31374 LEU 0 142 1 25 
    31375 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    31376 1 5 
    31377 PDB SEQRES record for chain D is incomplete. Ignoring input sequence records
    31378 as basis for sequence. 
    31379  
    31380 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31381 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-4.pdb #137 
    31382 --- 
    31383 Chain | Description 
    31384 6 | No description available 
    31385 9 M | No description available 
    31386 D | No description available 
    31387 E | No description available 
    31388 I | No description available 
    31389 N O T | No description available 
    31390  
    31391 
    31392 > hide #!136-137#!8.2 atoms
    31393 
    31394 > show #!136-137#!8.2 cartoons
    31395 
    31396 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31397 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31398 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31399 > alsoneighbour-2-refined-2-fixcrosshelix-3-refined-4-replacefirst-
    31400 > rechained.pdb"
    31401 
    31402 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    31403 MRCLaboratoryofMolecularBiology/Documents/Carter
    31404 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31405 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-4-replacefirst-rechained.pdb 
    31406 --- 
    31407 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    31408 LEU 0 142 1 25 
    31409 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    31410 1 5 
    31411 PDB SEQRES record for chain E is incomplete. Ignoring input sequence records
    31412 as basis for sequence. 
    31413  
    31414 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31415 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-4-replacefirst-rechained.pdb
    31416 #138 
    31417 --- 
    31418 Chain | Description 
    31419 A | No description available 
    31420 B C D | No description available 
    31421 E | No description available 
    31422 F | No description available 
    31423 G H | No description available 
    31424 I | No description available 
    31425  
    31426 
    31427 > hide #!136-138#!8.2 atoms
    31428 
    31429 > show #!136-138#!8.2 cartoons
    31430 
    31431 > hide #!137 models
    31432 
    31433 > hide #!136 models
    31434 
    31435 > close session
    31436 
    31437 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31438 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31439 > Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31440 > alsoneighbour-2-refined-2-fixcrosshelix-3-refined-4-replacefirst-
    31441 > rechained.pdb" format pdb
    31442 
    31443 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    31444 MRCLaboratoryofMolecularBiology/Documents/Carter
    31445 Lab/Diorge/Membranes/Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31446 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-4-replacefirst-rechained.pdb 
    31447 --- 
    31448 warnings | Start residue of secondary structure not found: HELIX 1 1 PRO 0 118
    31449 LEU 0 142 1 25 
    31450 Start residue of secondary structure not found: HELIX 2 2 PRO 0 145 GLU 0 149
    31451 1 5 
    31452 PDB SEQRES record for chain E is incomplete. Ignoring input sequence records
    31453 as basis for sequence. 
    31454  
    31455 Chain information for Fit14-27-1-stitchedtemp3-lightrefine4-newrefinedpf-
    31456 alsoneighbour-2-refined-2-fixcrosshelix-3-refined-4-replacefirst-rechained.pdb
    31457 #1 
    31458 --- 
    31459 Chain | Description 
    31460 A | No description available 
    31461 B C D | No description available 
    31462 E | No description available 
    31463 F | No description available 
    31464 G H | No description available 
    31465 I | No description available 
    31466  
    31467 
    31468 > hide atoms
    31469 
    31470 > show cartoons
    31471 
    31472 > lighting soft
    31473 
    31474 [Repeated 1 time(s)]
    31475 
    31476 > preset custom clean-chain
    31477 
    31478 Using preset: Custom / Clean-chain 
    31479 
    31480 > set bgColor #ffffff00
    31481 
    31482 Preset expands to these ChimeraX commands:
    31483 
    31484    
    31485    
    31486     lighting soft
    31487     set bgColor white
    31488     cartoon style coil width 1.5 thickness 0.8
    31489     cartoon style helix xsection round width 3 thickness 0.8
    31490     cartoon style strand xsection round width 3 thickness 0.8
    31491     cartoon style strand arrowscale 1
    31492     cartoon style helix xsection oval sides 10
    31493     graphics silhouettes true
    31494     graphics silhouettes width 1.5
    31495     graphics silhouettes depthJump 0.003
    31496     lighting msDepthBias 0.004
    31497     lighting shadows true intensity 0.06
    31498     lighting depthCueColor #000000
    31499     color bychain
    31500     ui windowfill true
    31501 
    31502  
    31503 
    31504 > ui windowfill toggle
    31505 
    31506 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31507 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31508 > Lab/Diorge/Membranes/pointy-1pf.pdb"
    31509 
    31510 Chain information for pointy-1pf.pdb #2 
    31511 --- 
    31512 Chain | Description 
    31513 0 6 o r x | No description available 
    31514 W | No description available 
    31515 Z | No description available 
    31516 c | No description available 
    31517 f | No description available 
    31518 u | No description available 
    31519  
    31520 
    31521 > hide atoms
    31522 
    31523 > show cartoons
    31524 
    31525 > show atoms
    31526 
    31527 > delete atoms sel
    31528 
    31529 > delete bonds sel
    31530 
    31531 > preset custom pretty-chain
    31532 
    31533 Using preset: Custom / Pretty-chain 
    31534 Preset expands to these ChimeraX commands:
    31535 
    31536    
    31537    
    31538     lighting soft
    31539     set bgColor white
    31540     cartoon style coil width 1.5 thickness 0.8
    31541     cartoon style helix xsection round width 3 thickness 0.8
    31542     cartoon style strand xsection round width 3 thickness 0.8
    31543     cartoon style strand arrowscale 1
    31544     cartoon style helix xsection oval sides 10
    31545     graphics silhouettes true
    31546     graphics silhouettes width 1.5
    31547     graphics silhouettes depthJump 0.003
    31548     lighting msDepthBias 0.004
    31549     lighting shadows true intensity 0.06
    31550     lighting depthCueColor #000000
    31551     color bychain
    31552 
    31553  
    31554 
    31555 > hide atoms
    31556 
    31557 > show cartoons
    31558 
    31559 > hide #!1 models
    31560 
    31561 > show #!1 models
    31562 
    31563 > hide #!1 models
    31564 
    31565 > show #!1 models
    31566 
    31567 > close #2
    31568 
    31569 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31570 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31571 > Lab/Diorge/Membranes/pointy-1pf-relative-rechained.pdb"
    31572 
    31573 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    31574 MRCLaboratoryofMolecularBiology/Documents/Carter
    31575 Lab/Diorge/Membranes/pointy-1pf-relative-rechained.pdb 
    31576 --- 
    31577 warnings | Start residue of secondary structure not found: HELIX 1 1 TRP W 5
    31578 LYS W 48 1 44 
    31579 Start residue of secondary structure not found: HELIX 2 2 LYS W 55 SER W 88 1
    31580 34 
    31581 Start residue of secondary structure not found: HELIX 3 3 TRP Z 5 LYS Z 48 1
    31582 44 
    31583 Start residue of secondary structure not found: HELIX 4 4 LYS Z 55 THR Z 115 1
    31584 61 
    31585 Start residue of secondary structure not found: HELIX 5 5 TRP c 5 LYS c 48 1
    31586 44 
    31587 27 messages similar to the above omitted 
    31588  
    31589 Chain information for pointy-1pf-relative-rechained.pdb #2 
    31590 --- 
    31591 Chain | Description 
    31592 A B D E F | No description available 
    31593 C | No description available 
    31594 G | No description available 
    31595 H | No description available 
    31596 I | No description available 
    31597  
    31598 
    31599 > hide atoms
    31600 
    31601 > preset custom clean-chain
    31602 
    31603 Using preset: Custom / Clean-chain 
    31604 Preset expands to these ChimeraX commands:
    31605 
    31606    
    31607    
    31608     lighting soft
    31609     set bgColor white
    31610     cartoon style coil width 1.5 thickness 0.8
    31611     cartoon style helix xsection round width 3 thickness 0.8
    31612     cartoon style strand xsection round width 3 thickness 0.8
    31613     cartoon style strand arrowscale 1
    31614     cartoon style helix xsection oval sides 10
    31615     graphics silhouettes true
    31616     graphics silhouettes width 1.5
    31617     graphics silhouettes depthJump 0.003
    31618     lighting msDepthBias 0.004
    31619     lighting shadows true intensity 0.06
    31620     lighting depthCueColor #000000
    31621     color bychain
    31622     ui windowfill true
    31623 
    31624  
    31625 
    31626 > ui windowfill toggle
    31627 
    31628 > hide #!2 models
    31629 
    31630 > show #!2 models
    31631 
    31632 > select add #2
    31633 
    31634 13873 atoms, 13870 bonds, 895 residues, 1 model selected 
    31635 
    31636 > view sel
    31637 
    31638 No displayed objects specified. 
    31639 
    31640 > close #2
    31641 
    31642 > open "/Users/chaaban/Library/CloudStorage/OneDrive-
    31643 > MRCLaboratoryofMolecularBiology/Documents/Carter
    31644 > Lab/Diorge/Membranes/pointy-1pf-relative-rechained.pdb"
    31645 
    31646 Summary of feedback from opening /Users/chaaban/Library/CloudStorage/OneDrive-
    31647 MRCLaboratoryofMolecularBiology/Documents/Carter
    31648 Lab/Diorge/Membranes/pointy-1pf-relative-rechained.pdb 
    31649 --- 
    31650 warnings | Start residue of secondary structure not found: HELIX 1 1 TRP W 5
    31651 LYS W 48 1 44 
    31652 Start residue of secondary structure not found: HELIX 2 2 LYS W 55 SER W 88 1
    31653 34 
    31654 Start residue of secondary structure not found: HELIX 3 3 TRP Z 5 LYS Z 48 1
    31655 44 
    31656 Start residue of secondary structure not found: HELIX 4 4 LYS Z 55 THR Z 115 1
    31657 61 
    31658 Start residue of secondary structure not found: HELIX 5 5 TRP c 5 LYS c 48 1
    31659 44 
    31660 27 messages similar to the above omitted 
    31661  
    31662 Chain information for pointy-1pf-relative-rechained.pdb #2 
    31663 --- 
    31664 Chain | Description 
    31665 A B D E F | No description available 
    31666 C | No description available 
    31667 G | No description available 
    31668 H | No description available 
    31669 I | No description available 
    31670  
    31671 
    31672 > hide atoms
     2007[deleted to fit within ticket limits]
    316732008
    316742009> show cartoons