| 13 | |
| 14 | After running this function as a command and change the lighting the camera would clip in the middle of the protein |
| 15 | |
| 16 | |
| 17 | Log: |
| 18 | UCSF ChimeraX version: 0.8 (2018-08-09) |
| 19 | OpenGL version: 4.1 ATI-2.0.36 |
| 20 | OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine |
| 21 | OpenGL vendor: ATI Technologies Inc. |
| 22 | How to cite UCSF ChimeraX |
| 23 | |
| 24 | open 1ycr format mmCIF fromDatabase pdb |
| 25 | |
| 26 | Summary of feedback from opening 1ycr fetched from pdb |
| 27 | --- |
| 28 | notes | Used PDBx fixed column width tables to speed up reading mmCIF file |
| 29 | Used PDBx keywords to speed up reading mmCIF file |
| 30 | |
| 31 | 1ycr title: MDM2 bound to the transactivation domain of P53 |
| 32 | [more info...;] |
| 33 | Chain information for 1ycr #1 |
| 34 | --- |
| 35 | Chain | Description |
| 36 | A | MDM2 |
| 37 | B | P53 |
| 38 | |
| 39 | Opened mmCIF data containing 818 atoms and 835 bonds |
| 40 | |
| 41 | select up |
| 42 | |
| 43 | 64 atoms, 66 bonds selected |
| 44 | |
| 45 | select up |
| 46 | |
| 47 | 113 atoms, 116 bonds selected |
| 48 | |
| 49 | toolshed show "Command Line Interface" |
| 50 | |
| 51 | toolshed show "File History" |
| 52 | |
| 53 | name frozen lig sel |
| 54 | |
| 55 | select up |
| 56 | |
| 57 | 23 atoms, 23 bonds selected |
| 58 | |
| 59 | select up |
| 60 | |
| 61 | 705 atoms, 719 bonds selected |
| 62 | |
| 63 | name frozen prot sel |
| 64 | |
| 65 | change_bgcolor |
| 66 | |
| 67 | lighting full |
| 68 | |
| 69 | help help:contact.html |
| 70 | |
| 71 | toolshed show "Bug Reporter" |
| 72 | |
| 73 | |
| 74 | |
| 75 | |
| 76 | OpenGL version: 4.1 ATI-2.0.36 |
| 77 | OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine |
| 78 | OpenGL vendor: ATI Technologies Inc. |
| 79 | File attachment: Screen Shot 2018-08-22 at 2.28.01 PM.png |
| 80 | |
| 81 | }}} |
| 82 | |
| 83 | [attachment:"Screen Shot 2018-08-22 at 2.28.01 PM.png"] |