Changes between Initial Version and Version 1 of Ticket #1248


Ignore:
Timestamp:
Aug 13, 2018, 10:18:23 AM (7 years ago)
Author:
Eric Pettersen
Comment:

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  • Ticket #1248

    • Property Component Unassigned → Graphics
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → atom spec balloon: index is out of bounds
    • Property Version → 0.8

  • Ticket #1248 – Description

    initial v1  
    425425 
    426426
     427
     428[multiple copies of this error deleted]
     429
    427430IndexError: index 776 is out of bounds for axis 0 with size 776 
    428431 
    … …  
    589592bug report will be created. 
    590593
    591 Traceback (most recent call last): 
    592   File
    593 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    594 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    595     s.ui.mouse_modes.mouse_pause_tracking() 
    596   File
    597 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    598 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    599     self._mouse_pause() 
    600   File
    601 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    602 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    603     m.pause(self._mouse_pause_position) 
    604   File
    605 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    606 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    607     p = picked_object(x, y, self.view) 
    608   File
    609 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    610 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    611     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    612 max_transparent_layers) 
    613   File
    614 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    615 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    616     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    617   File
    618 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    619 packages/chimerax/core/graphics/view.py", line 785, in
    620 first_intercept_on_segment 
    621     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    622   File
    623 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    624 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    625     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    626 exclude) 
    627   File
    628 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    629 packages/chimerax/core/graphics/drawing.py", line 904, in
    630 first_intercept_children 
    631     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    632   File
    633 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    634 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    635     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    636 exclude) 
    637   File
    638 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    639 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    640     p = d.first_intercept(xyz1, xyz2) 
    641   File
    642 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    643 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    644     atom = self.visible_atoms[anum] 
    645   File
    646 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    647 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    648     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    649 IndexError: index 776 is out of bounds for axis 0 with size 776 
    650  
    651 
    652 IndexError: index 776 is out of bounds for axis 0 with size 776 
    653  
    654 File
    655 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    656 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    657 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    658  
    659 See log for complete Python traceback. 
    660  
    661 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    662 describe what you were doing and include a copy of the contents of the log.
    663 Don't include any data you wish to remain private since a publicly viewable
    664 bug report will be created. 
    665 
    666 Traceback (most recent call last): 
    667   File
    668 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    669 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    670     s.ui.mouse_modes.mouse_pause_tracking() 
    671   File
    672 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    673 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    674     self._mouse_pause() 
    675   File
    676 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    677 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    678     m.pause(self._mouse_pause_position) 
    679   File
    680 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    681 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    682     p = picked_object(x, y, self.view) 
    683   File
    684 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    685 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    686     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    687 max_transparent_layers) 
    688   File
    689 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    690 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    691     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    692   File
    693 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    694 packages/chimerax/core/graphics/view.py", line 785, in
    695 first_intercept_on_segment 
    696     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    697   File
    698 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    699 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    700     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    701 exclude) 
    702   File
    703 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    704 packages/chimerax/core/graphics/drawing.py", line 904, in
    705 first_intercept_children 
    706     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    707   File
    708 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    709 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    710     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    711 exclude) 
    712   File
    713 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    714 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    715     p = d.first_intercept(xyz1, xyz2) 
    716   File
    717 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    718 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    719     atom = self.visible_atoms[anum] 
    720   File
    721 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    722 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    723     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    724 IndexError: index 776 is out of bounds for axis 0 with size 776 
    725  
    726 
    727 IndexError: index 776 is out of bounds for axis 0 with size 776 
    728  
    729 File
    730 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    731 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    732 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    733  
    734 See log for complete Python traceback. 
    735  
    736 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    737 describe what you were doing and include a copy of the contents of the log.
    738 Don't include any data you wish to remain private since a publicly viewable
    739 bug report will be created. 
    740 
    741 Traceback (most recent call last): 
    742   File
    743 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    744 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    745     s.ui.mouse_modes.mouse_pause_tracking() 
    746   File
    747 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    748 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    749     self._mouse_pause() 
    750   File
    751 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    752 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    753     m.pause(self._mouse_pause_position) 
    754   File
    755 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    756 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    757     p = picked_object(x, y, self.view) 
    758   File
    759 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    760 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    761     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    762 max_transparent_layers) 
    763   File
    764 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    765 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    766     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    767   File
    768 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    769 packages/chimerax/core/graphics/view.py", line 785, in
    770 first_intercept_on_segment 
    771     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    772   File
    773 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    774 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    775     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    776 exclude) 
    777   File
    778 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    779 packages/chimerax/core/graphics/drawing.py", line 904, in
    780 first_intercept_children 
    781     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    782   File
    783 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    784 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    785     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    786 exclude) 
    787   File
    788 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    789 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    790     p = d.first_intercept(xyz1, xyz2) 
    791   File
    792 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    793 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    794     atom = self.visible_atoms[anum] 
    795   File
    796 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    797 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    798     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    799 IndexError: index 776 is out of bounds for axis 0 with size 776 
    800  
    801 
    802 IndexError: index 776 is out of bounds for axis 0 with size 776 
    803  
    804 File
    805 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    806 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    807 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    808  
    809 See log for complete Python traceback. 
    810  
    811 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    812 describe what you were doing and include a copy of the contents of the log.
    813 Don't include any data you wish to remain private since a publicly viewable
    814 bug report will be created. 
    815 
    816 Traceback (most recent call last): 
    817   File
    818 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    819 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    820     s.ui.mouse_modes.mouse_pause_tracking() 
    821   File
    822 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    823 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    824     self._mouse_pause() 
    825   File
    826 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    827 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    828     m.pause(self._mouse_pause_position) 
    829   File
    830 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    831 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    832     p = picked_object(x, y, self.view) 
    833   File
    834 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    835 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    836     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    837 max_transparent_layers) 
    838   File
    839 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    840 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    841     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    842   File
    843 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    844 packages/chimerax/core/graphics/view.py", line 785, in
    845 first_intercept_on_segment 
    846     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    847   File
    848 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    849 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    850     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    851 exclude) 
    852   File
    853 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    854 packages/chimerax/core/graphics/drawing.py", line 904, in
    855 first_intercept_children 
    856     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    857   File
    858 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    859 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    860     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    861 exclude) 
    862   File
    863 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    864 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    865     p = d.first_intercept(xyz1, xyz2) 
    866   File
    867 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    868 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    869     atom = self.visible_atoms[anum] 
    870   File
    871 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    872 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    873     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    874 IndexError: index 776 is out of bounds for axis 0 with size 776 
    875  
    876 
    877 IndexError: index 776 is out of bounds for axis 0 with size 776 
    878  
    879 File
    880 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    881 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    882 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    883  
    884 See log for complete Python traceback. 
    885  
    886 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    887 describe what you were doing and include a copy of the contents of the log.
    888 Don't include any data you wish to remain private since a publicly viewable
    889 bug report will be created. 
    890 
    891 Traceback (most recent call last): 
    892   File
    893 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    894 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    895     s.ui.mouse_modes.mouse_pause_tracking() 
    896   File
    897 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    898 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    899     self._mouse_pause() 
    900   File
    901 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    902 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    903     m.pause(self._mouse_pause_position) 
    904   File
    905 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    906 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    907     p = picked_object(x, y, self.view) 
    908   File
    909 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    910 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    911     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    912 max_transparent_layers) 
    913   File
    914 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    915 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    916     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    917   File
    918 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    919 packages/chimerax/core/graphics/view.py", line 785, in
    920 first_intercept_on_segment 
    921     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    922   File
    923 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    924 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    925     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    926 exclude) 
    927   File
    928 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    929 packages/chimerax/core/graphics/drawing.py", line 904, in
    930 first_intercept_children 
    931     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    932   File
    933 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    934 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    935     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    936 exclude) 
    937   File
    938 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    939 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    940     p = d.first_intercept(xyz1, xyz2) 
    941   File
    942 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    943 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    944     atom = self.visible_atoms[anum] 
    945   File
    946 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    947 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    948     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    949 IndexError: index 776 is out of bounds for axis 0 with size 776 
    950  
    951 
    952 IndexError: index 776 is out of bounds for axis 0 with size 776 
    953  
    954 File
    955 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    956 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    957 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    958  
    959 See log for complete Python traceback. 
    960  
    961 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    962 describe what you were doing and include a copy of the contents of the log.
    963 Don't include any data you wish to remain private since a publicly viewable
    964 bug report will be created. 
    965 
    966 Traceback (most recent call last): 
    967   File
    968 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    969 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    970     s.ui.mouse_modes.mouse_pause_tracking() 
    971   File
    972 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    973 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    974     self._mouse_pause() 
    975   File
    976 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    977 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    978     m.pause(self._mouse_pause_position) 
    979   File
    980 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    981 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    982     p = picked_object(x, y, self.view) 
    983   File
    984 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    985 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    986     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    987 max_transparent_layers) 
    988   File
    989 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    990 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    991     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    992   File
    993 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    994 packages/chimerax/core/graphics/view.py", line 785, in
    995 first_intercept_on_segment 
    996     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    997   File
    998 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    999 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1000     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1001 exclude) 
    1002   File
    1003 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1004 packages/chimerax/core/graphics/drawing.py", line 904, in
    1005 first_intercept_children 
    1006     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1007   File
    1008 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1009 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1010     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1011 exclude) 
    1012   File
    1013 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1014 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1015     p = d.first_intercept(xyz1, xyz2) 
    1016   File
    1017 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1018 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1019     atom = self.visible_atoms[anum] 
    1020   File
    1021 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1022 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1023     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1024 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1025  
    1026 
    1027 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1028  
    1029 File
    1030 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1031 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1032 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1033  
    1034 See log for complete Python traceback. 
    1035  
    1036 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1037 describe what you were doing and include a copy of the contents of the log.
    1038 Don't include any data you wish to remain private since a publicly viewable
    1039 bug report will be created. 
    1040 
    1041 Traceback (most recent call last): 
    1042   File
    1043 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1044 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1045     s.ui.mouse_modes.mouse_pause_tracking() 
    1046   File
    1047 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1048 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1049     self._mouse_pause() 
    1050   File
    1051 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1052 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1053     m.pause(self._mouse_pause_position) 
    1054   File
    1055 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1056 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1057     p = picked_object(x, y, self.view) 
    1058   File
    1059 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1060 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1061     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1062 max_transparent_layers) 
    1063   File
    1064 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1065 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1066     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1067   File
    1068 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1069 packages/chimerax/core/graphics/view.py", line 785, in
    1070 first_intercept_on_segment 
    1071     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1072   File
    1073 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1074 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1075     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1076 exclude) 
    1077   File
    1078 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1079 packages/chimerax/core/graphics/drawing.py", line 904, in
    1080 first_intercept_children 
    1081     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1082   File
    1083 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1084 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1085     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1086 exclude) 
    1087   File
    1088 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1089 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1090     p = d.first_intercept(xyz1, xyz2) 
    1091   File
    1092 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1093 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1094     atom = self.visible_atoms[anum] 
    1095   File
    1096 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1097 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1098     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1099 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1100  
    1101 
    1102 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1103  
    1104 File
    1105 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1106 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1107 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1108  
    1109 See log for complete Python traceback. 
    1110  
    1111 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1112 describe what you were doing and include a copy of the contents of the log.
    1113 Don't include any data you wish to remain private since a publicly viewable
    1114 bug report will be created. 
    1115 
    1116 Traceback (most recent call last): 
    1117   File
    1118 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1119 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1120     s.ui.mouse_modes.mouse_pause_tracking() 
    1121   File
    1122 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1123 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1124     self._mouse_pause() 
    1125   File
    1126 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1127 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1128     m.pause(self._mouse_pause_position) 
    1129   File
    1130 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1131 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1132     p = picked_object(x, y, self.view) 
    1133   File
    1134 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1135 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1136     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1137 max_transparent_layers) 
    1138   File
    1139 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1140 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1141     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1142   File
    1143 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1144 packages/chimerax/core/graphics/view.py", line 785, in
    1145 first_intercept_on_segment 
    1146     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1147   File
    1148 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1149 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1150     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1151 exclude) 
    1152   File
    1153 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1154 packages/chimerax/core/graphics/drawing.py", line 904, in
    1155 first_intercept_children 
    1156     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1157   File
    1158 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1159 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1160     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1161 exclude) 
    1162   File
    1163 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1164 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1165     p = d.first_intercept(xyz1, xyz2) 
    1166   File
    1167 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1168 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1169     atom = self.visible_atoms[anum] 
    1170   File
    1171 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1172 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1173     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1174 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1175  
    1176 
    1177 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1178  
    1179 File
    1180 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1181 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1182 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1183  
    1184 See log for complete Python traceback. 
    1185  
    1186 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1187 describe what you were doing and include a copy of the contents of the log.
    1188 Don't include any data you wish to remain private since a publicly viewable
    1189 bug report will be created. 
    1190 
    1191 Traceback (most recent call last): 
    1192   File
    1193 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1194 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1195     s.ui.mouse_modes.mouse_pause_tracking() 
    1196   File
    1197 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1198 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1199     self._mouse_pause() 
    1200   File
    1201 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1202 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1203     m.pause(self._mouse_pause_position) 
    1204   File
    1205 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1206 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1207     p = picked_object(x, y, self.view) 
    1208   File
    1209 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1210 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1211     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1212 max_transparent_layers) 
    1213   File
    1214 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1215 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1216     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1217   File
    1218 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1219 packages/chimerax/core/graphics/view.py", line 785, in
    1220 first_intercept_on_segment 
    1221     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1222   File
    1223 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1224 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1225     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1226 exclude) 
    1227   File
    1228 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1229 packages/chimerax/core/graphics/drawing.py", line 904, in
    1230 first_intercept_children 
    1231     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1232   File
    1233 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1234 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1235     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1236 exclude) 
    1237   File
    1238 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1239 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1240     p = d.first_intercept(xyz1, xyz2) 
    1241   File
    1242 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1243 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1244     atom = self.visible_atoms[anum] 
    1245   File
    1246 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1247 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1248     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1249 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1250  
    1251 
    1252 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1253  
    1254 File
    1255 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1256 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1257 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1258  
    1259 See log for complete Python traceback. 
    1260  
    1261 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1262 describe what you were doing and include a copy of the contents of the log.
    1263 Don't include any data you wish to remain private since a publicly viewable
    1264 bug report will be created. 
    1265 
    1266 Traceback (most recent call last): 
    1267   File
    1268 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1269 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1270     s.ui.mouse_modes.mouse_pause_tracking() 
    1271   File
    1272 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1273 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1274     self._mouse_pause() 
    1275   File
    1276 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1277 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1278     m.pause(self._mouse_pause_position) 
    1279   File
    1280 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1281 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1282     p = picked_object(x, y, self.view) 
    1283   File
    1284 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1285 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1286     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1287 max_transparent_layers) 
    1288   File
    1289 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1290 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1291     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1292   File
    1293 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1294 packages/chimerax/core/graphics/view.py", line 785, in
    1295 first_intercept_on_segment 
    1296     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1297   File
    1298 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1299 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1300     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1301 exclude) 
    1302   File
    1303 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1304 packages/chimerax/core/graphics/drawing.py", line 904, in
    1305 first_intercept_children 
    1306     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1307   File
    1308 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1309 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1310     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1311 exclude) 
    1312   File
    1313 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1314 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1315     p = d.first_intercept(xyz1, xyz2) 
    1316   File
    1317 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1318 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1319     atom = self.visible_atoms[anum] 
    1320   File
    1321 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1322 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1323     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1324 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1325  
    1326 
    1327 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1328  
    1329 File
    1330 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1331 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1332 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1333  
    1334 See log for complete Python traceback. 
    1335  
    1336 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1337 describe what you were doing and include a copy of the contents of the log.
    1338 Don't include any data you wish to remain private since a publicly viewable
    1339 bug report will be created. 
    1340 
    1341 Traceback (most recent call last): 
    1342   File
    1343 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1344 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1345     s.ui.mouse_modes.mouse_pause_tracking() 
    1346   File
    1347 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1348 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1349     self._mouse_pause() 
    1350   File
    1351 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1352 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1353     m.pause(self._mouse_pause_position) 
    1354   File
    1355 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1356 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1357     p = picked_object(x, y, self.view) 
    1358   File
    1359 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1360 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1361     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1362 max_transparent_layers) 
    1363   File
    1364 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1365 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1366     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1367   File
    1368 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1369 packages/chimerax/core/graphics/view.py", line 785, in
    1370 first_intercept_on_segment 
    1371     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1372   File
    1373 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1374 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1375     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1376 exclude) 
    1377   File
    1378 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1379 packages/chimerax/core/graphics/drawing.py", line 904, in
    1380 first_intercept_children 
    1381     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1382   File
    1383 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1384 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1385     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1386 exclude) 
    1387   File
    1388 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1389 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1390     p = d.first_intercept(xyz1, xyz2) 
    1391   File
    1392 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1393 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1394     atom = self.visible_atoms[anum] 
    1395   File
    1396 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1397 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1398     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1399 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1400  
    1401 
    1402 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1403  
    1404 File
    1405 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1406 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1407 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1408  
    1409 See log for complete Python traceback. 
    1410  
    1411 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1412 describe what you were doing and include a copy of the contents of the log.
    1413 Don't include any data you wish to remain private since a publicly viewable
    1414 bug report will be created. 
    1415 
    1416 Traceback (most recent call last): 
    1417   File
    1418 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1419 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1420     s.ui.mouse_modes.mouse_pause_tracking() 
    1421   File
    1422 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1423 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1424     self._mouse_pause() 
    1425   File
    1426 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1427 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1428     m.pause(self._mouse_pause_position) 
    1429   File
    1430 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1431 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1432     p = picked_object(x, y, self.view) 
    1433   File
    1434 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1435 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1436     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1437 max_transparent_layers) 
    1438   File
    1439 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1440 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1441     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1442   File
    1443 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1444 packages/chimerax/core/graphics/view.py", line 785, in
    1445 first_intercept_on_segment 
    1446     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1447   File
    1448 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1449 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1450     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1451 exclude) 
    1452   File
    1453 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1454 packages/chimerax/core/graphics/drawing.py", line 904, in
    1455 first_intercept_children 
    1456     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1457   File
    1458 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1459 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1460     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1461 exclude) 
    1462   File
    1463 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1464 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1465     p = d.first_intercept(xyz1, xyz2) 
    1466   File
    1467 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1468 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1469     atom = self.visible_atoms[anum] 
    1470   File
    1471 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1472 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1473     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1474 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1475  
    1476 
    1477 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1478  
    1479 File
    1480 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1481 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1482 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1483  
    1484 See log for complete Python traceback. 
    1485  
    1486 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1487 describe what you were doing and include a copy of the contents of the log.
    1488 Don't include any data you wish to remain private since a publicly viewable
    1489 bug report will be created. 
    1490 
    1491 Traceback (most recent call last): 
    1492   File
    1493 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1494 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1495     s.ui.mouse_modes.mouse_pause_tracking() 
    1496   File
    1497 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1498 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1499     self._mouse_pause() 
    1500   File
    1501 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1502 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1503     m.pause(self._mouse_pause_position) 
    1504   File
    1505 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1506 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1507     p = picked_object(x, y, self.view) 
    1508   File
    1509 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1510 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1511     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1512 max_transparent_layers) 
    1513   File
    1514 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1515 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1516     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1517   File
    1518 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1519 packages/chimerax/core/graphics/view.py", line 785, in
    1520 first_intercept_on_segment 
    1521     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1522   File
    1523 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1524 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1525     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1526 exclude) 
    1527   File
    1528 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1529 packages/chimerax/core/graphics/drawing.py", line 904, in
    1530 first_intercept_children 
    1531     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1532   File
    1533 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1534 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1535     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1536 exclude) 
    1537   File
    1538 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1539 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1540     p = d.first_intercept(xyz1, xyz2) 
    1541   File
    1542 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1543 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1544     atom = self.visible_atoms[anum] 
    1545   File
    1546 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1547 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1548     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1549 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1550  
    1551 
    1552 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1553  
    1554 File
    1555 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1556 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1557 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1558  
    1559 See log for complete Python traceback. 
    1560  
    1561 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1562 describe what you were doing and include a copy of the contents of the log.
    1563 Don't include any data you wish to remain private since a publicly viewable
    1564 bug report will be created. 
    1565 
    1566 Traceback (most recent call last): 
    1567   File
    1568 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1569 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1570     s.ui.mouse_modes.mouse_pause_tracking() 
    1571   File
    1572 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1573 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1574     self._mouse_pause() 
    1575   File
    1576 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1577 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1578     m.pause(self._mouse_pause_position) 
    1579   File
    1580 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1581 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1582     p = picked_object(x, y, self.view) 
    1583   File
    1584 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1585 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1586     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1587 max_transparent_layers) 
    1588   File
    1589 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1590 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1591     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1592   File
    1593 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1594 packages/chimerax/core/graphics/view.py", line 785, in
    1595 first_intercept_on_segment 
    1596     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1597   File
    1598 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1599 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1600     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1601 exclude) 
    1602   File
    1603 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1604 packages/chimerax/core/graphics/drawing.py", line 904, in
    1605 first_intercept_children 
    1606     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1607   File
    1608 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1609 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1610     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1611 exclude) 
    1612   File
    1613 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1614 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1615     p = d.first_intercept(xyz1, xyz2) 
    1616   File
    1617 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1618 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1619     atom = self.visible_atoms[anum] 
    1620   File
    1621 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1622 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1623     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1624 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1625  
    1626 
    1627 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1628  
    1629 File
    1630 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1631 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1632 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1633  
    1634 See log for complete Python traceback. 
    1635  
    1636 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1637 describe what you were doing and include a copy of the contents of the log.
    1638 Don't include any data you wish to remain private since a publicly viewable
    1639 bug report will be created. 
    1640 
    1641 Traceback (most recent call last): 
    1642   File
    1643 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1644 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1645     s.ui.mouse_modes.mouse_pause_tracking() 
    1646   File
    1647 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1648 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1649     self._mouse_pause() 
    1650   File
    1651 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1652 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1653     m.pause(self._mouse_pause_position) 
    1654   File
    1655 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1656 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1657     p = picked_object(x, y, self.view) 
    1658   File
    1659 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1660 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1661     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1662 max_transparent_layers) 
    1663   File
    1664 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1665 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1666     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1667   File
    1668 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1669 packages/chimerax/core/graphics/view.py", line 785, in
    1670 first_intercept_on_segment 
    1671     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1672   File
    1673 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1674 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1675     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1676 exclude) 
    1677   File
    1678 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1679 packages/chimerax/core/graphics/drawing.py", line 904, in
    1680 first_intercept_children 
    1681     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1682   File
    1683 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1684 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1685     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1686 exclude) 
    1687   File
    1688 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1689 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1690     p = d.first_intercept(xyz1, xyz2) 
    1691   File
    1692 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1693 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1694     atom = self.visible_atoms[anum] 
    1695   File
    1696 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1697 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1698     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1699 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1700  
    1701 
    1702 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1703  
    1704 File
    1705 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1706 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1707 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1708  
    1709 See log for complete Python traceback. 
    1710  
    1711 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1712 describe what you were doing and include a copy of the contents of the log.
    1713 Don't include any data you wish to remain private since a publicly viewable
    1714 bug report will be created. 
    1715 
    1716 Traceback (most recent call last): 
    1717   File
    1718 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1719 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1720     s.ui.mouse_modes.mouse_pause_tracking() 
    1721   File
    1722 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1723 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1724     self._mouse_pause() 
    1725   File
    1726 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1727 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1728     m.pause(self._mouse_pause_position) 
    1729   File
    1730 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1731 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1732     p = picked_object(x, y, self.view) 
    1733   File
    1734 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1735 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1736     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1737 max_transparent_layers) 
    1738   File
    1739 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1740 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1741     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1742   File
    1743 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1744 packages/chimerax/core/graphics/view.py", line 785, in
    1745 first_intercept_on_segment 
    1746     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1747   File
    1748 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1749 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1750     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1751 exclude) 
    1752   File
    1753 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1754 packages/chimerax/core/graphics/drawing.py", line 904, in
    1755 first_intercept_children 
    1756     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1757   File
    1758 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1759 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1760     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1761 exclude) 
    1762   File
    1763 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1764 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1765     p = d.first_intercept(xyz1, xyz2) 
    1766   File
    1767 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1768 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1769     atom = self.visible_atoms[anum] 
    1770   File
    1771 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1772 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1773     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1774 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1775  
    1776 
    1777 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1778  
    1779 File
    1780 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1781 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1782 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1783  
    1784 See log for complete Python traceback. 
    1785  
    1786 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1787 describe what you were doing and include a copy of the contents of the log.
    1788 Don't include any data you wish to remain private since a publicly viewable
    1789 bug report will be created. 
    1790 
    1791 Traceback (most recent call last): 
    1792   File
    1793 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1794 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1795     s.ui.mouse_modes.mouse_pause_tracking() 
    1796   File
    1797 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1798 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1799     self._mouse_pause() 
    1800   File
    1801 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1802 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1803     m.pause(self._mouse_pause_position) 
    1804   File
    1805 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1806 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1807     p = picked_object(x, y, self.view) 
    1808   File
    1809 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1810 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1811     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1812 max_transparent_layers) 
    1813   File
    1814 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1815 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1816     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1817   File
    1818 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1819 packages/chimerax/core/graphics/view.py", line 785, in
    1820 first_intercept_on_segment 
    1821     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1822   File
    1823 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1824 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1825     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1826 exclude) 
    1827   File
    1828 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1829 packages/chimerax/core/graphics/drawing.py", line 904, in
    1830 first_intercept_children 
    1831     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1832   File
    1833 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1834 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1835     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1836 exclude) 
    1837   File
    1838 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1839 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1840     p = d.first_intercept(xyz1, xyz2) 
    1841   File
    1842 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1843 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1844     atom = self.visible_atoms[anum] 
    1845   File
    1846 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1847 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1848     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1849 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1850  
    1851 
    1852 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1853  
    1854 File
    1855 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1856 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1857 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1858  
    1859 See log for complete Python traceback. 
    1860  
    1861 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1862 describe what you were doing and include a copy of the contents of the log.
    1863 Don't include any data you wish to remain private since a publicly viewable
    1864 bug report will be created. 
    1865 
    1866 Traceback (most recent call last): 
    1867   File
    1868 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1869 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1870     s.ui.mouse_modes.mouse_pause_tracking() 
    1871   File
    1872 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1873 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1874     self._mouse_pause() 
    1875   File
    1876 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1877 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1878     m.pause(self._mouse_pause_position) 
    1879   File
    1880 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1881 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1882     p = picked_object(x, y, self.view) 
    1883   File
    1884 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1885 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1886     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1887 max_transparent_layers) 
    1888   File
    1889 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1890 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1891     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1892   File
    1893 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1894 packages/chimerax/core/graphics/view.py", line 785, in
    1895 first_intercept_on_segment 
    1896     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1897   File
    1898 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1899 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1900     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1901 exclude) 
    1902   File
    1903 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1904 packages/chimerax/core/graphics/drawing.py", line 904, in
    1905 first_intercept_children 
    1906     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1907   File
    1908 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1909 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1910     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1911 exclude) 
    1912   File
    1913 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1914 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1915     p = d.first_intercept(xyz1, xyz2) 
    1916   File
    1917 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1918 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1919     atom = self.visible_atoms[anum] 
    1920   File
    1921 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1922 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1923     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1924 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1925  
    1926 
    1927 IndexError: index 776 is out of bounds for axis 0 with size 776 
    1928  
    1929 File
    1930 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1931 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1932 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1933  
    1934 See log for complete Python traceback. 
    1935  
    1936 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    1937 describe what you were doing and include a copy of the contents of the log.
    1938 Don't include any data you wish to remain private since a publicly viewable
    1939 bug report will be created. 
    1940 
    1941 Traceback (most recent call last): 
    1942   File
    1943 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1944 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    1945     s.ui.mouse_modes.mouse_pause_tracking() 
    1946   File
    1947 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1948 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    1949     self._mouse_pause() 
    1950   File
    1951 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1952 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    1953     m.pause(self._mouse_pause_position) 
    1954   File
    1955 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1956 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    1957     p = picked_object(x, y, self.view) 
    1958   File
    1959 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1960 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    1961     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    1962 max_transparent_layers) 
    1963   File
    1964 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1965 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    1966     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    1967   File
    1968 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1969 packages/chimerax/core/graphics/view.py", line 785, in
    1970 first_intercept_on_segment 
    1971     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    1972   File
    1973 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1974 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    1975     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    1976 exclude) 
    1977   File
    1978 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1979 packages/chimerax/core/graphics/drawing.py", line 904, in
    1980 first_intercept_children 
    1981     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    1982   File
    1983 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1984 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    1985     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    1986 exclude) 
    1987   File
    1988 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1989 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    1990     p = d.first_intercept(xyz1, xyz2) 
    1991   File
    1992 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1993 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    1994     atom = self.visible_atoms[anum] 
    1995   File
    1996 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    1997 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    1998     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    1999 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2000  
    2001 
    2002 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2003  
    2004 File
    2005 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2006 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2007 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2008  
    2009 See log for complete Python traceback. 
    2010  
    2011 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2012 describe what you were doing and include a copy of the contents of the log.
    2013 Don't include any data you wish to remain private since a publicly viewable
    2014 bug report will be created. 
    2015 
    2016 Traceback (most recent call last): 
    2017   File
    2018 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2019 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2020     s.ui.mouse_modes.mouse_pause_tracking() 
    2021   File
    2022 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2023 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2024     self._mouse_pause() 
    2025   File
    2026 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2027 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2028     m.pause(self._mouse_pause_position) 
    2029   File
    2030 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2031 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2032     p = picked_object(x, y, self.view) 
    2033   File
    2034 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2035 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2036     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2037 max_transparent_layers) 
    2038   File
    2039 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2040 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2041     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2042   File
    2043 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2044 packages/chimerax/core/graphics/view.py", line 785, in
    2045 first_intercept_on_segment 
    2046     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2047   File
    2048 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2049 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2050     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2051 exclude) 
    2052   File
    2053 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2054 packages/chimerax/core/graphics/drawing.py", line 904, in
    2055 first_intercept_children 
    2056     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2057   File
    2058 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2059 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2060     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2061 exclude) 
    2062   File
    2063 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2064 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2065     p = d.first_intercept(xyz1, xyz2) 
    2066   File
    2067 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2068 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2069     atom = self.visible_atoms[anum] 
    2070   File
    2071 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2072 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2073     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2074 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2075  
    2076 
    2077 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2078  
    2079 File
    2080 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2081 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2082 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2083  
    2084 See log for complete Python traceback. 
    2085  
    2086 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2087 describe what you were doing and include a copy of the contents of the log.
    2088 Don't include any data you wish to remain private since a publicly viewable
    2089 bug report will be created. 
    2090 
    2091 Traceback (most recent call last): 
    2092   File
    2093 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2094 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2095     s.ui.mouse_modes.mouse_pause_tracking() 
    2096   File
    2097 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2098 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2099     self._mouse_pause() 
    2100   File
    2101 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2102 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2103     m.pause(self._mouse_pause_position) 
    2104   File
    2105 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2106 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2107     p = picked_object(x, y, self.view) 
    2108   File
    2109 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2110 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2111     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2112 max_transparent_layers) 
    2113   File
    2114 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2115 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2116     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2117   File
    2118 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2119 packages/chimerax/core/graphics/view.py", line 785, in
    2120 first_intercept_on_segment 
    2121     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2122   File
    2123 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2124 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2125     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2126 exclude) 
    2127   File
    2128 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2129 packages/chimerax/core/graphics/drawing.py", line 904, in
    2130 first_intercept_children 
    2131     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2132   File
    2133 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2134 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2135     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2136 exclude) 
    2137   File
    2138 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2139 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2140     p = d.first_intercept(xyz1, xyz2) 
    2141   File
    2142 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2143 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2144     atom = self.visible_atoms[anum] 
    2145   File
    2146 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2147 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2148     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2149 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2150  
    2151 
    2152 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2153  
    2154 File
    2155 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2156 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2157 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2158  
    2159 See log for complete Python traceback. 
    2160  
    2161 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2162 describe what you were doing and include a copy of the contents of the log.
    2163 Don't include any data you wish to remain private since a publicly viewable
    2164 bug report will be created. 
    2165 
    2166 Traceback (most recent call last): 
    2167   File
    2168 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2169 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2170     s.ui.mouse_modes.mouse_pause_tracking() 
    2171   File
    2172 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2173 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2174     self._mouse_pause() 
    2175   File
    2176 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2177 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2178     m.pause(self._mouse_pause_position) 
    2179   File
    2180 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2181 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2182     p = picked_object(x, y, self.view) 
    2183   File
    2184 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2185 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2186     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2187 max_transparent_layers) 
    2188   File
    2189 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2190 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2191     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2192   File
    2193 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2194 packages/chimerax/core/graphics/view.py", line 785, in
    2195 first_intercept_on_segment 
    2196     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2197   File
    2198 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2199 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2200     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2201 exclude) 
    2202   File
    2203 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2204 packages/chimerax/core/graphics/drawing.py", line 904, in
    2205 first_intercept_children 
    2206     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2207   File
    2208 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2209 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2210     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2211 exclude) 
    2212   File
    2213 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2214 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2215     p = d.first_intercept(xyz1, xyz2) 
    2216   File
    2217 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2218 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2219     atom = self.visible_atoms[anum] 
    2220   File
    2221 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2222 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2223     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2224 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2225  
    2226 
    2227 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2228  
    2229 File
    2230 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2231 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2232 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2233  
    2234 See log for complete Python traceback. 
    2235  
    2236 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2237 describe what you were doing and include a copy of the contents of the log.
    2238 Don't include any data you wish to remain private since a publicly viewable
    2239 bug report will be created. 
    2240 
    2241 Traceback (most recent call last): 
    2242   File
    2243 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2244 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2245     s.ui.mouse_modes.mouse_pause_tracking() 
    2246   File
    2247 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2248 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2249     self._mouse_pause() 
    2250   File
    2251 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2252 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2253     m.pause(self._mouse_pause_position) 
    2254   File
    2255 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2256 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2257     p = picked_object(x, y, self.view) 
    2258   File
    2259 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2260 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2261     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2262 max_transparent_layers) 
    2263   File
    2264 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2265 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2266     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2267   File
    2268 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2269 packages/chimerax/core/graphics/view.py", line 785, in
    2270 first_intercept_on_segment 
    2271     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2272   File
    2273 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2274 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2275     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2276 exclude) 
    2277   File
    2278 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2279 packages/chimerax/core/graphics/drawing.py", line 904, in
    2280 first_intercept_children 
    2281     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2282   File
    2283 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2284 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2285     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2286 exclude) 
    2287   File
    2288 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2289 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2290     p = d.first_intercept(xyz1, xyz2) 
    2291   File
    2292 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2293 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2294     atom = self.visible_atoms[anum] 
    2295   File
    2296 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2297 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2298     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2299 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2300  
    2301 
    2302 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2303  
    2304 File
    2305 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2306 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2307 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2308  
    2309 See log for complete Python traceback. 
    2310  
    2311 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2312 describe what you were doing and include a copy of the contents of the log.
    2313 Don't include any data you wish to remain private since a publicly viewable
    2314 bug report will be created. 
    2315 
    2316 Traceback (most recent call last): 
    2317   File
    2318 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2319 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2320     s.ui.mouse_modes.mouse_pause_tracking() 
    2321   File
    2322 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2323 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2324     self._mouse_pause() 
    2325   File
    2326 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2327 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2328     m.pause(self._mouse_pause_position) 
    2329   File
    2330 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2331 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2332     p = picked_object(x, y, self.view) 
    2333   File
    2334 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2335 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2336     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2337 max_transparent_layers) 
    2338   File
    2339 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2340 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2341     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2342   File
    2343 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2344 packages/chimerax/core/graphics/view.py", line 785, in
    2345 first_intercept_on_segment 
    2346     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2347   File
    2348 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2349 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2350     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2351 exclude) 
    2352   File
    2353 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2354 packages/chimerax/core/graphics/drawing.py", line 904, in
    2355 first_intercept_children 
    2356     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2357   File
    2358 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2359 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2360     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2361 exclude) 
    2362   File
    2363 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2364 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2365     p = d.first_intercept(xyz1, xyz2) 
    2366   File
    2367 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2368 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2369     atom = self.visible_atoms[anum] 
    2370   File
    2371 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2372 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2373     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2374 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2375  
    2376 
    2377 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2378  
    2379 File
    2380 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2381 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2382 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2383  
    2384 See log for complete Python traceback. 
    2385  
    2386 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2387 describe what you were doing and include a copy of the contents of the log.
    2388 Don't include any data you wish to remain private since a publicly viewable
    2389 bug report will be created. 
    2390 
    2391 Traceback (most recent call last): 
    2392   File
    2393 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2394 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2395     s.ui.mouse_modes.mouse_pause_tracking() 
    2396   File
    2397 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2398 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2399     self._mouse_pause() 
    2400   File
    2401 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2402 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2403     m.pause(self._mouse_pause_position) 
    2404   File
    2405 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2406 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2407     p = picked_object(x, y, self.view) 
    2408   File
    2409 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2410 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2411     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2412 max_transparent_layers) 
    2413   File
    2414 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2415 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2416     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2417   File
    2418 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2419 packages/chimerax/core/graphics/view.py", line 785, in
    2420 first_intercept_on_segment 
    2421     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2422   File
    2423 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2424 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2425     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2426 exclude) 
    2427   File
    2428 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2429 packages/chimerax/core/graphics/drawing.py", line 904, in
    2430 first_intercept_children 
    2431     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2432   File
    2433 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2434 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2435     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2436 exclude) 
    2437   File
    2438 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2439 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2440     p = d.first_intercept(xyz1, xyz2) 
    2441   File
    2442 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2443 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2444     atom = self.visible_atoms[anum] 
    2445   File
    2446 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2447 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2448     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2449 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2450  
    2451 
    2452 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2453  
    2454 File
    2455 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2456 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2457 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2458  
    2459 See log for complete Python traceback. 
    2460  
    2461 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2462 describe what you were doing and include a copy of the contents of the log.
    2463 Don't include any data you wish to remain private since a publicly viewable
    2464 bug report will be created. 
    2465 
    2466 Traceback (most recent call last): 
    2467   File
    2468 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2469 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2470     s.ui.mouse_modes.mouse_pause_tracking() 
    2471   File
    2472 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2473 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2474     self._mouse_pause() 
    2475   File
    2476 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2477 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2478     m.pause(self._mouse_pause_position) 
    2479   File
    2480 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2481 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2482     p = picked_object(x, y, self.view) 
    2483   File
    2484 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2485 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2486     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2487 max_transparent_layers) 
    2488   File
    2489 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2490 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2491     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2492   File
    2493 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2494 packages/chimerax/core/graphics/view.py", line 785, in
    2495 first_intercept_on_segment 
    2496     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2497   File
    2498 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2499 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2500     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2501 exclude) 
    2502   File
    2503 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2504 packages/chimerax/core/graphics/drawing.py", line 904, in
    2505 first_intercept_children 
    2506     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2507   File
    2508 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2509 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2510     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2511 exclude) 
    2512   File
    2513 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2514 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2515     p = d.first_intercept(xyz1, xyz2) 
    2516   File
    2517 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2518 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2519     atom = self.visible_atoms[anum] 
    2520   File
    2521 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2522 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2523     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2524 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2525  
    2526 
    2527 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2528  
    2529 File
    2530 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2531 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2532 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2533  
    2534 See log for complete Python traceback. 
    2535  
    2536 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2537 describe what you were doing and include a copy of the contents of the log.
    2538 Don't include any data you wish to remain private since a publicly viewable
    2539 bug report will be created. 
    2540 
    2541 Traceback (most recent call last): 
    2542   File
    2543 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2544 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2545     s.ui.mouse_modes.mouse_pause_tracking() 
    2546   File
    2547 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2548 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2549     self._mouse_pause() 
    2550   File
    2551 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2552 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2553     m.pause(self._mouse_pause_position) 
    2554   File
    2555 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2556 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2557     p = picked_object(x, y, self.view) 
    2558   File
    2559 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2560 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2561     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2562 max_transparent_layers) 
    2563   File
    2564 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2565 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2566     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2567   File
    2568 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2569 packages/chimerax/core/graphics/view.py", line 785, in
    2570 first_intercept_on_segment 
    2571     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2572   File
    2573 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2574 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2575     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2576 exclude) 
    2577   File
    2578 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2579 packages/chimerax/core/graphics/drawing.py", line 904, in
    2580 first_intercept_children 
    2581     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2582   File
    2583 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2584 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2585     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2586 exclude) 
    2587   File
    2588 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2589 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2590     p = d.first_intercept(xyz1, xyz2) 
    2591   File
    2592 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2593 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2594     atom = self.visible_atoms[anum] 
    2595   File
    2596 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2597 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2598     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2599 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2600  
    2601 
    2602 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2603  
    2604 File
    2605 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2606 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2607 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2608  
    2609 See log for complete Python traceback. 
    2610  
    2611 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2612 describe what you were doing and include a copy of the contents of the log.
    2613 Don't include any data you wish to remain private since a publicly viewable
    2614 bug report will be created. 
    2615 
    2616 Traceback (most recent call last): 
    2617   File
    2618 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2619 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2620     s.ui.mouse_modes.mouse_pause_tracking() 
    2621   File
    2622 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2623 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2624     self._mouse_pause() 
    2625   File
    2626 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2627 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2628     m.pause(self._mouse_pause_position) 
    2629   File
    2630 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2631 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2632     p = picked_object(x, y, self.view) 
    2633   File
    2634 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2635 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2636     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2637 max_transparent_layers) 
    2638   File
    2639 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2640 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2641     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2642   File
    2643 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2644 packages/chimerax/core/graphics/view.py", line 785, in
    2645 first_intercept_on_segment 
    2646     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2647   File
    2648 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2649 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2650     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2651 exclude) 
    2652   File
    2653 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2654 packages/chimerax/core/graphics/drawing.py", line 904, in
    2655 first_intercept_children 
    2656     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2657   File
    2658 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2659 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2660     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2661 exclude) 
    2662   File
    2663 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2664 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2665     p = d.first_intercept(xyz1, xyz2) 
    2666   File
    2667 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2668 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2669     atom = self.visible_atoms[anum] 
    2670   File
    2671 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2672 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2673     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2674 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2675  
    2676 
    2677 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2678  
    2679 File
    2680 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2681 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2682 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2683  
    2684 See log for complete Python traceback. 
    2685  
    2686 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2687 describe what you were doing and include a copy of the contents of the log.
    2688 Don't include any data you wish to remain private since a publicly viewable
    2689 bug report will be created. 
    2690 
    2691 Traceback (most recent call last): 
    2692   File
    2693 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2694 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2695     s.ui.mouse_modes.mouse_pause_tracking() 
    2696   File
    2697 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2698 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2699     self._mouse_pause() 
    2700   File
    2701 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2702 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2703     m.pause(self._mouse_pause_position) 
    2704   File
    2705 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2706 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2707     p = picked_object(x, y, self.view) 
    2708   File
    2709 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2710 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2711     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2712 max_transparent_layers) 
    2713   File
    2714 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2715 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2716     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2717   File
    2718 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2719 packages/chimerax/core/graphics/view.py", line 785, in
    2720 first_intercept_on_segment 
    2721     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2722   File
    2723 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2724 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2725     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2726 exclude) 
    2727   File
    2728 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2729 packages/chimerax/core/graphics/drawing.py", line 904, in
    2730 first_intercept_children 
    2731     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2732   File
    2733 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2734 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2735     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2736 exclude) 
    2737   File
    2738 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2739 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2740     p = d.first_intercept(xyz1, xyz2) 
    2741   File
    2742 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2743 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2744     atom = self.visible_atoms[anum] 
    2745   File
    2746 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2747 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2748     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2749 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2750  
    2751 
    2752 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2753  
    2754 File
    2755 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2756 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2757 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2758  
    2759 See log for complete Python traceback. 
    2760  
    2761 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2762 describe what you were doing and include a copy of the contents of the log.
    2763 Don't include any data you wish to remain private since a publicly viewable
    2764 bug report will be created. 
    2765 
    2766 Traceback (most recent call last): 
    2767   File
    2768 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2769 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2770     s.ui.mouse_modes.mouse_pause_tracking() 
    2771   File
    2772 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2773 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2774     self._mouse_pause() 
    2775   File
    2776 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2777 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2778     m.pause(self._mouse_pause_position) 
    2779   File
    2780 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2781 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2782     p = picked_object(x, y, self.view) 
    2783   File
    2784 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2785 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2786     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2787 max_transparent_layers) 
    2788   File
    2789 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2790 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2791     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2792   File
    2793 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2794 packages/chimerax/core/graphics/view.py", line 785, in
    2795 first_intercept_on_segment 
    2796     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2797   File
    2798 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2799 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2800     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2801 exclude) 
    2802   File
    2803 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2804 packages/chimerax/core/graphics/drawing.py", line 904, in
    2805 first_intercept_children 
    2806     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2807   File
    2808 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2809 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2810     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2811 exclude) 
    2812   File
    2813 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2814 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2815     p = d.first_intercept(xyz1, xyz2) 
    2816   File
    2817 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2818 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2819     atom = self.visible_atoms[anum] 
    2820   File
    2821 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2822 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2823     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2824 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2825  
    2826 
    2827 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2828  
    2829 File
    2830 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2831 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2832 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2833  
    2834 See log for complete Python traceback. 
    2835  
    2836 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2837 describe what you were doing and include a copy of the contents of the log.
    2838 Don't include any data you wish to remain private since a publicly viewable
    2839 bug report will be created. 
    2840 
    2841 Traceback (most recent call last): 
    2842   File
    2843 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2844 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2845     s.ui.mouse_modes.mouse_pause_tracking() 
    2846   File
    2847 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2848 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2849     self._mouse_pause() 
    2850   File
    2851 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2852 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2853     m.pause(self._mouse_pause_position) 
    2854   File
    2855 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2856 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2857     p = picked_object(x, y, self.view) 
    2858   File
    2859 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2860 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2861     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2862 max_transparent_layers) 
    2863   File
    2864 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2865 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2866     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2867   File
    2868 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2869 packages/chimerax/core/graphics/view.py", line 785, in
    2870 first_intercept_on_segment 
    2871     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2872   File
    2873 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2874 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2875     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2876 exclude) 
    2877   File
    2878 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2879 packages/chimerax/core/graphics/drawing.py", line 904, in
    2880 first_intercept_children 
    2881     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2882   File
    2883 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2884 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2885     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2886 exclude) 
    2887   File
    2888 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2889 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2890     p = d.first_intercept(xyz1, xyz2) 
    2891   File
    2892 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2893 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2894     atom = self.visible_atoms[anum] 
    2895   File
    2896 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2897 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2898     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2899 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2900  
    2901 
    2902 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2903  
    2904 File
    2905 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2906 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2907 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2908  
    2909 See log for complete Python traceback. 
    2910  
    2911 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2912 describe what you were doing and include a copy of the contents of the log.
    2913 Don't include any data you wish to remain private since a publicly viewable
    2914 bug report will be created. 
    2915 
    2916 Traceback (most recent call last): 
    2917   File
    2918 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2919 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2920     s.ui.mouse_modes.mouse_pause_tracking() 
    2921   File
    2922 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2923 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2924     self._mouse_pause() 
    2925   File
    2926 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2927 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    2928     m.pause(self._mouse_pause_position) 
    2929   File
    2930 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2931 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    2932     p = picked_object(x, y, self.view) 
    2933   File
    2934 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2935 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    2936     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    2937 max_transparent_layers) 
    2938   File
    2939 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2940 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    2941     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    2942   File
    2943 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2944 packages/chimerax/core/graphics/view.py", line 785, in
    2945 first_intercept_on_segment 
    2946     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    2947   File
    2948 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2949 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    2950     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    2951 exclude) 
    2952   File
    2953 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2954 packages/chimerax/core/graphics/drawing.py", line 904, in
    2955 first_intercept_children 
    2956     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    2957   File
    2958 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2959 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    2960     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    2961 exclude) 
    2962   File
    2963 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2964 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    2965     p = d.first_intercept(xyz1, xyz2) 
    2966   File
    2967 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2968 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    2969     atom = self.visible_atoms[anum] 
    2970   File
    2971 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2972 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2973     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2974 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2975  
    2976 
    2977 IndexError: index 776 is out of bounds for axis 0 with size 776 
    2978  
    2979 File
    2980 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2981 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    2982 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    2983  
    2984 See log for complete Python traceback. 
    2985  
    2986 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    2987 describe what you were doing and include a copy of the contents of the log.
    2988 Don't include any data you wish to remain private since a publicly viewable
    2989 bug report will be created. 
    2990 
    2991 Traceback (most recent call last): 
    2992   File
    2993 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2994 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    2995     s.ui.mouse_modes.mouse_pause_tracking() 
    2996   File
    2997 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    2998 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    2999     self._mouse_pause() 
    3000   File
    3001 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3002 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3003     m.pause(self._mouse_pause_position) 
    3004   File
    3005 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3006 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3007     p = picked_object(x, y, self.view) 
    3008   File
    3009 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3010 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3011     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3012 max_transparent_layers) 
    3013   File
    3014 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3015 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3016     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3017   File
    3018 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3019 packages/chimerax/core/graphics/view.py", line 785, in
    3020 first_intercept_on_segment 
    3021     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3022   File
    3023 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3024 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3025     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3026 exclude) 
    3027   File
    3028 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3029 packages/chimerax/core/graphics/drawing.py", line 904, in
    3030 first_intercept_children 
    3031     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3032   File
    3033 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3034 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3035     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3036 exclude) 
    3037   File
    3038 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3039 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3040     p = d.first_intercept(xyz1, xyz2) 
    3041   File
    3042 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3043 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3044     atom = self.visible_atoms[anum] 
    3045   File
    3046 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3047 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3048     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3049 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3050  
    3051 
    3052 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3053  
    3054 File
    3055 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3056 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3057 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3058  
    3059 See log for complete Python traceback. 
    3060  
    3061 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3062 describe what you were doing and include a copy of the contents of the log.
    3063 Don't include any data you wish to remain private since a publicly viewable
    3064 bug report will be created. 
    3065 
    3066 Traceback (most recent call last): 
    3067   File
    3068 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3069 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3070     s.ui.mouse_modes.mouse_pause_tracking() 
    3071   File
    3072 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3073 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3074     self._mouse_pause() 
    3075   File
    3076 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3077 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3078     m.pause(self._mouse_pause_position) 
    3079   File
    3080 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3081 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3082     p = picked_object(x, y, self.view) 
    3083   File
    3084 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3085 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3086     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3087 max_transparent_layers) 
    3088   File
    3089 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3090 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3091     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3092   File
    3093 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3094 packages/chimerax/core/graphics/view.py", line 785, in
    3095 first_intercept_on_segment 
    3096     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3097   File
    3098 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3099 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3100     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3101 exclude) 
    3102   File
    3103 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3104 packages/chimerax/core/graphics/drawing.py", line 904, in
    3105 first_intercept_children 
    3106     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3107   File
    3108 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3109 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3110     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3111 exclude) 
    3112   File
    3113 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3114 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3115     p = d.first_intercept(xyz1, xyz2) 
    3116   File
    3117 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3118 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3119     atom = self.visible_atoms[anum] 
    3120   File
    3121 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3122 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3123     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3124 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3125  
    3126 
    3127 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3128  
    3129 File
    3130 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3131 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3132 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3133  
    3134 See log for complete Python traceback. 
    3135  
    3136 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3137 describe what you were doing and include a copy of the contents of the log.
    3138 Don't include any data you wish to remain private since a publicly viewable
    3139 bug report will be created. 
    3140 
    3141 Traceback (most recent call last): 
    3142   File
    3143 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3144 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3145     s.ui.mouse_modes.mouse_pause_tracking() 
    3146   File
    3147 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3148 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3149     self._mouse_pause() 
    3150   File
    3151 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3152 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3153     m.pause(self._mouse_pause_position) 
    3154   File
    3155 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3156 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3157     p = picked_object(x, y, self.view) 
    3158   File
    3159 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3160 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3161     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3162 max_transparent_layers) 
    3163   File
    3164 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3165 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3166     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3167   File
    3168 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3169 packages/chimerax/core/graphics/view.py", line 785, in
    3170 first_intercept_on_segment 
    3171     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3172   File
    3173 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3174 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3175     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3176 exclude) 
    3177   File
    3178 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3179 packages/chimerax/core/graphics/drawing.py", line 904, in
    3180 first_intercept_children 
    3181     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3182   File
    3183 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3184 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3185     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3186 exclude) 
    3187   File
    3188 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3189 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3190     p = d.first_intercept(xyz1, xyz2) 
    3191   File
    3192 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3193 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3194     atom = self.visible_atoms[anum] 
    3195   File
    3196 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3197 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3198     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3199 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3200  
    3201 
    3202 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3203  
    3204 File
    3205 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3206 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3207 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3208  
    3209 See log for complete Python traceback. 
    3210  
    3211 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3212 describe what you were doing and include a copy of the contents of the log.
    3213 Don't include any data you wish to remain private since a publicly viewable
    3214 bug report will be created. 
    3215 
    3216 Traceback (most recent call last): 
    3217   File
    3218 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3219 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3220     s.ui.mouse_modes.mouse_pause_tracking() 
    3221   File
    3222 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3223 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3224     self._mouse_pause() 
    3225   File
    3226 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3227 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3228     m.pause(self._mouse_pause_position) 
    3229   File
    3230 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3231 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3232     p = picked_object(x, y, self.view) 
    3233   File
    3234 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3235 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3236     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3237 max_transparent_layers) 
    3238   File
    3239 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3240 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3241     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3242   File
    3243 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3244 packages/chimerax/core/graphics/view.py", line 785, in
    3245 first_intercept_on_segment 
    3246     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3247   File
    3248 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3249 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3250     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3251 exclude) 
    3252   File
    3253 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3254 packages/chimerax/core/graphics/drawing.py", line 904, in
    3255 first_intercept_children 
    3256     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3257   File
    3258 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3259 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3260     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3261 exclude) 
    3262   File
    3263 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3264 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3265     p = d.first_intercept(xyz1, xyz2) 
    3266   File
    3267 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3268 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3269     atom = self.visible_atoms[anum] 
    3270   File
    3271 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3272 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3273     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3274 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3275  
    3276 
    3277 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3278  
    3279 File
    3280 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3281 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3282 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3283  
    3284 See log for complete Python traceback. 
    3285  
    3286 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3287 describe what you were doing and include a copy of the contents of the log.
    3288 Don't include any data you wish to remain private since a publicly viewable
    3289 bug report will be created. 
    3290 
    3291 Traceback (most recent call last): 
    3292   File
    3293 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3294 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3295     s.ui.mouse_modes.mouse_pause_tracking() 
    3296   File
    3297 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3298 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3299     self._mouse_pause() 
    3300   File
    3301 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3302 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3303     m.pause(self._mouse_pause_position) 
    3304   File
    3305 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3306 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3307     p = picked_object(x, y, self.view) 
    3308   File
    3309 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3310 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3311     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3312 max_transparent_layers) 
    3313   File
    3314 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3315 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3316     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3317   File
    3318 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3319 packages/chimerax/core/graphics/view.py", line 785, in
    3320 first_intercept_on_segment 
    3321     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3322   File
    3323 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3324 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3325     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3326 exclude) 
    3327   File
    3328 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3329 packages/chimerax/core/graphics/drawing.py", line 904, in
    3330 first_intercept_children 
    3331     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3332   File
    3333 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3334 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3335     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3336 exclude) 
    3337   File
    3338 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3339 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3340     p = d.first_intercept(xyz1, xyz2) 
    3341   File
    3342 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3343 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3344     atom = self.visible_atoms[anum] 
    3345   File
    3346 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3347 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3348     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3349 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3350  
    3351 
    3352 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3353  
    3354 File
    3355 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3356 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3357 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3358  
    3359 See log for complete Python traceback. 
    3360  
    3361 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3362 describe what you were doing and include a copy of the contents of the log.
    3363 Don't include any data you wish to remain private since a publicly viewable
    3364 bug report will be created. 
    3365 
    3366 Traceback (most recent call last): 
    3367   File
    3368 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3369 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3370     s.ui.mouse_modes.mouse_pause_tracking() 
    3371   File
    3372 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3373 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3374     self._mouse_pause() 
    3375   File
    3376 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3377 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3378     m.pause(self._mouse_pause_position) 
    3379   File
    3380 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3381 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3382     p = picked_object(x, y, self.view) 
    3383   File
    3384 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3385 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3386     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3387 max_transparent_layers) 
    3388   File
    3389 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3390 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3391     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3392   File
    3393 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3394 packages/chimerax/core/graphics/view.py", line 785, in
    3395 first_intercept_on_segment 
    3396     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3397   File
    3398 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3399 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3400     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3401 exclude) 
    3402   File
    3403 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3404 packages/chimerax/core/graphics/drawing.py", line 904, in
    3405 first_intercept_children 
    3406     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3407   File
    3408 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3409 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3410     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3411 exclude) 
    3412   File
    3413 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3414 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3415     p = d.first_intercept(xyz1, xyz2) 
    3416   File
    3417 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3418 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3419     atom = self.visible_atoms[anum] 
    3420   File
    3421 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3422 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3423     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3424 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3425  
    3426 
    3427 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3428  
    3429 File
    3430 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3431 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3432 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3433  
    3434 See log for complete Python traceback. 
    3435  
    3436 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3437 describe what you were doing and include a copy of the contents of the log.
    3438 Don't include any data you wish to remain private since a publicly viewable
    3439 bug report will be created. 
    3440 
    3441 Traceback (most recent call last): 
    3442   File
    3443 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3444 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3445     s.ui.mouse_modes.mouse_pause_tracking() 
    3446   File
    3447 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3448 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3449     self._mouse_pause() 
    3450   File
    3451 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3452 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3453     m.pause(self._mouse_pause_position) 
    3454   File
    3455 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3456 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3457     p = picked_object(x, y, self.view) 
    3458   File
    3459 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3460 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3461     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3462 max_transparent_layers) 
    3463   File
    3464 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3465 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3466     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3467   File
    3468 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3469 packages/chimerax/core/graphics/view.py", line 785, in
    3470 first_intercept_on_segment 
    3471     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3472   File
    3473 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3474 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3475     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3476 exclude) 
    3477   File
    3478 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3479 packages/chimerax/core/graphics/drawing.py", line 904, in
    3480 first_intercept_children 
    3481     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3482   File
    3483 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3484 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3485     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3486 exclude) 
    3487   File
    3488 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3489 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3490     p = d.first_intercept(xyz1, xyz2) 
    3491   File
    3492 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3493 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3494     atom = self.visible_atoms[anum] 
    3495   File
    3496 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3497 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3498     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3499 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3500  
    3501 
    3502 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3503  
    3504 File
    3505 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3506 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3507 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3508  
    3509 See log for complete Python traceback. 
    3510  
    3511 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3512 describe what you were doing and include a copy of the contents of the log.
    3513 Don't include any data you wish to remain private since a publicly viewable
    3514 bug report will be created. 
    3515 
    3516 Traceback (most recent call last): 
    3517   File
    3518 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3519 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3520     s.ui.mouse_modes.mouse_pause_tracking() 
    3521   File
    3522 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3523 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3524     self._mouse_pause() 
    3525   File
    3526 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3527 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3528     m.pause(self._mouse_pause_position) 
    3529   File
    3530 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3531 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3532     p = picked_object(x, y, self.view) 
    3533   File
    3534 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3535 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3536     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3537 max_transparent_layers) 
    3538   File
    3539 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3540 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3541     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3542   File
    3543 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3544 packages/chimerax/core/graphics/view.py", line 785, in
    3545 first_intercept_on_segment 
    3546     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3547   File
    3548 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3549 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3550     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3551 exclude) 
    3552   File
    3553 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3554 packages/chimerax/core/graphics/drawing.py", line 904, in
    3555 first_intercept_children 
    3556     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3557   File
    3558 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3559 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3560     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3561 exclude) 
    3562   File
    3563 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3564 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3565     p = d.first_intercept(xyz1, xyz2) 
    3566   File
    3567 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3568 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3569     atom = self.visible_atoms[anum] 
    3570   File
    3571 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3572 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3573     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3574 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3575  
    3576 
    3577 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3578  
    3579 File
    3580 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3581 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3582 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3583  
    3584 See log for complete Python traceback. 
    3585  
    3586 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3587 describe what you were doing and include a copy of the contents of the log.
    3588 Don't include any data you wish to remain private since a publicly viewable
    3589 bug report will be created. 
    3590 
    3591 Traceback (most recent call last): 
    3592   File
    3593 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3594 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3595     s.ui.mouse_modes.mouse_pause_tracking() 
    3596   File
    3597 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3598 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3599     self._mouse_pause() 
    3600   File
    3601 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3602 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3603     m.pause(self._mouse_pause_position) 
    3604   File
    3605 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3606 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3607     p = picked_object(x, y, self.view) 
    3608   File
    3609 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3610 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3611     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3612 max_transparent_layers) 
    3613   File
    3614 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3615 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3616     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3617   File
    3618 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3619 packages/chimerax/core/graphics/view.py", line 785, in
    3620 first_intercept_on_segment 
    3621     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3622   File
    3623 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3624 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3625     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3626 exclude) 
    3627   File
    3628 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3629 packages/chimerax/core/graphics/drawing.py", line 904, in
    3630 first_intercept_children 
    3631     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3632   File
    3633 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3634 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3635     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3636 exclude) 
    3637   File
    3638 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3639 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3640     p = d.first_intercept(xyz1, xyz2) 
    3641   File
    3642 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3643 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3644     atom = self.visible_atoms[anum] 
    3645   File
    3646 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3647 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3648     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3649 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3650  
    3651 
    3652 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3653  
    3654 File
    3655 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3656 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3657 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3658  
    3659 See log for complete Python traceback. 
    3660  
    3661 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3662 describe what you were doing and include a copy of the contents of the log.
    3663 Don't include any data you wish to remain private since a publicly viewable
    3664 bug report will be created. 
    3665 
    3666 Traceback (most recent call last): 
    3667   File
    3668 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3669 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3670     s.ui.mouse_modes.mouse_pause_tracking() 
    3671   File
    3672 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3673 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3674     self._mouse_pause() 
    3675   File
    3676 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3677 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3678     m.pause(self._mouse_pause_position) 
    3679   File
    3680 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3681 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3682     p = picked_object(x, y, self.view) 
    3683   File
    3684 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3685 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3686     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3687 max_transparent_layers) 
    3688   File
    3689 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3690 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3691     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3692   File
    3693 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3694 packages/chimerax/core/graphics/view.py", line 785, in
    3695 first_intercept_on_segment 
    3696     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3697   File
    3698 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3699 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3700     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3701 exclude) 
    3702   File
    3703 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3704 packages/chimerax/core/graphics/drawing.py", line 904, in
    3705 first_intercept_children 
    3706     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3707   File
    3708 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3709 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3710     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3711 exclude) 
    3712   File
    3713 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3714 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3715     p = d.first_intercept(xyz1, xyz2) 
    3716   File
    3717 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3718 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3719     atom = self.visible_atoms[anum] 
    3720   File
    3721 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3722 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3723     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3724 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3725  
    3726 
    3727 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3728  
    3729 File
    3730 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3731 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3732 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3733  
    3734 See log for complete Python traceback. 
    3735  
    3736 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3737 describe what you were doing and include a copy of the contents of the log.
    3738 Don't include any data you wish to remain private since a publicly viewable
    3739 bug report will be created. 
    3740 
    3741 Traceback (most recent call last): 
    3742   File
    3743 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3744 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3745     s.ui.mouse_modes.mouse_pause_tracking() 
    3746   File
    3747 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3748 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3749     self._mouse_pause() 
    3750   File
    3751 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3752 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3753     m.pause(self._mouse_pause_position) 
    3754   File
    3755 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3756 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3757     p = picked_object(x, y, self.view) 
    3758   File
    3759 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3760 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3761     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3762 max_transparent_layers) 
    3763   File
    3764 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3765 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3766     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3767   File
    3768 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3769 packages/chimerax/core/graphics/view.py", line 785, in
    3770 first_intercept_on_segment 
    3771     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3772   File
    3773 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3774 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3775     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3776 exclude) 
    3777   File
    3778 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3779 packages/chimerax/core/graphics/drawing.py", line 904, in
    3780 first_intercept_children 
    3781     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3782   File
    3783 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3784 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3785     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3786 exclude) 
    3787   File
    3788 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3789 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3790     p = d.first_intercept(xyz1, xyz2) 
    3791   File
    3792 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3793 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3794     atom = self.visible_atoms[anum] 
    3795   File
    3796 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3797 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3798     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3799 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3800  
    3801 
    3802 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3803  
    3804 File
    3805 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3806 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3807 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3808  
    3809 See log for complete Python traceback. 
    3810  
    3811 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3812 describe what you were doing and include a copy of the contents of the log.
    3813 Don't include any data you wish to remain private since a publicly viewable
    3814 bug report will be created. 
    3815 
    3816 Traceback (most recent call last): 
    3817   File
    3818 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3819 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3820     s.ui.mouse_modes.mouse_pause_tracking() 
    3821   File
    3822 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3823 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3824     self._mouse_pause() 
    3825   File
    3826 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3827 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3828     m.pause(self._mouse_pause_position) 
    3829   File
    3830 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3831 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3832     p = picked_object(x, y, self.view) 
    3833   File
    3834 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3835 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3836     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3837 max_transparent_layers) 
    3838   File
    3839 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3840 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3841     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3842   File
    3843 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3844 packages/chimerax/core/graphics/view.py", line 785, in
    3845 first_intercept_on_segment 
    3846     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3847   File
    3848 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3849 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3850     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3851 exclude) 
    3852   File
    3853 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3854 packages/chimerax/core/graphics/drawing.py", line 904, in
    3855 first_intercept_children 
    3856     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3857   File
    3858 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3859 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3860     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3861 exclude) 
    3862   File
    3863 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3864 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3865     p = d.first_intercept(xyz1, xyz2) 
    3866   File
    3867 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3868 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3869     atom = self.visible_atoms[anum] 
    3870   File
    3871 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3872 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3873     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3874 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3875  
    3876 
    3877 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3878  
    3879 File
    3880 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3881 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3882 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3883  
    3884 See log for complete Python traceback. 
    3885  
    3886 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3887 describe what you were doing and include a copy of the contents of the log.
    3888 Don't include any data you wish to remain private since a publicly viewable
    3889 bug report will be created. 
    3890 
    3891 Traceback (most recent call last): 
    3892   File
    3893 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3894 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3895     s.ui.mouse_modes.mouse_pause_tracking() 
    3896   File
    3897 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3898 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3899     self._mouse_pause() 
    3900   File
    3901 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3902 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3903     m.pause(self._mouse_pause_position) 
    3904   File
    3905 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3906 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3907     p = picked_object(x, y, self.view) 
    3908   File
    3909 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3910 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3911     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3912 max_transparent_layers) 
    3913   File
    3914 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3915 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3916     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3917   File
    3918 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3919 packages/chimerax/core/graphics/view.py", line 785, in
    3920 first_intercept_on_segment 
    3921     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3922   File
    3923 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3924 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    3925     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    3926 exclude) 
    3927   File
    3928 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3929 packages/chimerax/core/graphics/drawing.py", line 904, in
    3930 first_intercept_children 
    3931     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    3932   File
    3933 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3934 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    3935     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    3936 exclude) 
    3937   File
    3938 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3939 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    3940     p = d.first_intercept(xyz1, xyz2) 
    3941   File
    3942 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3943 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    3944     atom = self.visible_atoms[anum] 
    3945   File
    3946 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3947 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3948     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3949 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3950  
    3951 
    3952 IndexError: index 776 is out of bounds for axis 0 with size 776 
    3953  
    3954 File
    3955 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3956 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    3957 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    3958  
    3959 See log for complete Python traceback. 
    3960  
    3961 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    3962 describe what you were doing and include a copy of the contents of the log.
    3963 Don't include any data you wish to remain private since a publicly viewable
    3964 bug report will be created. 
    3965 
    3966 Traceback (most recent call last): 
    3967   File
    3968 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3969 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    3970     s.ui.mouse_modes.mouse_pause_tracking() 
    3971   File
    3972 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3973 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    3974     self._mouse_pause() 
    3975   File
    3976 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3977 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    3978     m.pause(self._mouse_pause_position) 
    3979   File
    3980 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3981 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    3982     p = picked_object(x, y, self.view) 
    3983   File
    3984 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3985 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    3986     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    3987 max_transparent_layers) 
    3988   File
    3989 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3990 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    3991     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    3992   File
    3993 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3994 packages/chimerax/core/graphics/view.py", line 785, in
    3995 first_intercept_on_segment 
    3996     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    3997   File
    3998 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    3999 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    4000     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    4001 exclude) 
    4002   File
    4003 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4004 packages/chimerax/core/graphics/drawing.py", line 904, in
    4005 first_intercept_children 
    4006     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    4007   File
    4008 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4009 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    4010     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    4011 exclude) 
    4012   File
    4013 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4014 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    4015     p = d.first_intercept(xyz1, xyz2) 
    4016   File
    4017 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4018 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    4019     atom = self.visible_atoms[anum] 
    4020   File
    4021 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4022 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    4023     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    4024 IndexError: index 776 is out of bounds for axis 0 with size 776 
    4025  
    4026 
    4027 IndexError: index 776 is out of bounds for axis 0 with size 776 
    4028  
    4029 File
    4030 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4031 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    4032 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    4033  
    4034 See log for complete Python traceback. 
    4035  
    4036 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    4037 describe what you were doing and include a copy of the contents of the log.
    4038 Don't include any data you wish to remain private since a publicly viewable
    4039 bug report will be created. 
    4040 
    4041 Traceback (most recent call last): 
    4042   File
    4043 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4044 packages/chimerax/core/updateloop.py", line 128, in _redraw_timer_callback 
    4045     s.ui.mouse_modes.mouse_pause_tracking() 
    4046   File
    4047 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4048 packages/chimerax/ui/mousemodes.py", line 290, in mouse_pause_tracking 
    4049     self._mouse_pause() 
    4050   File
    4051 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4052 packages/chimerax/ui/mousemodes.py", line 376, in _mouse_pause 
    4053     m.pause(self._mouse_pause_position) 
    4054   File
    4055 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4056 packages/chimerax/ui/mousemodes.py", line 844, in pause 
    4057     p = picked_object(x, y, self.view) 
    4058   File
    4059 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4060 packages/chimerax/ui/mousemodes.py", line 584, in picked_object 
    4061     p = picked_object_on_segment(xyz1, xyz2, view, max_transparent_layers =
    4062 max_transparent_layers) 
    4063   File
    4064 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4065 packages/chimerax/ui/mousemodes.py", line 588, in picked_object_on_segment 
    4066     p2 = p = view.first_intercept_on_segment(xyz1, xyz2, exclude=unpickable) 
    4067   File
    4068 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4069 packages/chimerax/core/graphics/view.py", line 785, in
    4070 first_intercept_on_segment 
    4071     p = self.drawing.first_intercept(xyz1, xyz2, exclude=exclude) 
    4072   File
    4073 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4074 packages/chimerax/core/graphics/drawing.py", line 888, in first_intercept 
    4075     p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2,
    4076 exclude) 
    4077   File
    4078 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4079 packages/chimerax/core/graphics/drawing.py", line 904, in
    4080 first_intercept_children 
    4081     p = d.first_intercept(cxyz1, cxyz2, exclude) 
    4082   File
    4083 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4084 packages/chimerax/atomic/structure.py", line 1546, in first_intercept 
    4085     ppicks = self._position_intercepts(self.positions[pn], mxyz1, mxyz2,
    4086 exclude) 
    4087   File
    4088 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4089 packages/chimerax/atomic/structure.py", line 1567, in _position_intercepts 
    4090     p = d.first_intercept(xyz1, xyz2) 
    4091   File
    4092 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4093 packages/chimerax/atomic/structure.py", line 1982, in first_intercept 
    4094     atom = self.visible_atoms[anum] 
    4095   File
    4096 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4097 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    4098     v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    4099 IndexError: index 776 is out of bounds for axis 0 with size 776 
    4100  
    4101 
    4102 IndexError: index 776 is out of bounds for axis 0 with size 776 
    4103  
    4104 File
    4105 "/private/var/folders/mx/76n0n04j0_g5ps8ryp66k7540000gn/T/AppTranslocation/5E0A9AD0-3DC2-4293-98DB-B1DB02D7708E/d/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
    4106 packages/chimerax/atomic/molarray.py", line 154, in __getitem__ 
    4107 v = self._object_class.c_ptr_to_py_inst(self._pointers[i]) 
    4108  
    4109 See log for complete Python traceback. 
    4110  
    4111 If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
    4112 describe what you were doing and include a copy of the contents of the log.
    4113 Don't include any data you wish to remain private since a publicly viewable
    4114 bug report will be created. 
    4115 
    4116594
    4117595