Changes between Initial Version and Version 1 of Ticket #1219


Ignore:
Timestamp:
Aug 1, 2018, 10:25:33 AM (7 years ago)
Author:
Eric Pettersen
Comment:

Reported by Arik Thuesen

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  • Ticket #1219

    • Property Component Unassigned → Input/Output
    • Property Milestone → 1.0
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → UnicodeEncodeError writing WaveFront OBJ

  • Ticket #1219 – Description

    initial v1  
    407407distance /C:2011@C8 /A:629@CB
    408408
    409 Distance between /C DG
     409Distance between /C DG 2011 C8 and /A HIS 629 CB: 41.336Å 
     410
     411distance /B:1015@N6 /A:652@CB
     412
     413Distance between /B DA 1015 N6 and /A LYS 652 CB: 42.390Å 
     414
     415distance /A:588@NH2 /C:2001@O5'
     416
     417Distance between /A ARG 588 NH2 and /C DT 2001 O5': 42.515Å 
     418
     419distance /B:1004@OP1 /B:1005@C7
     420
     421Distance between /B DG 1004 OP1 and DT 1005 C7: 7.143Å 
     422
     423ui mousemode rightMode clip rotate
     424
     425No model specified for saving map 
     426
     427Exception ignored in: <bound method Buffer.__del__ of
     428<chimerax.core.graphics.opengl.Buffer object at 0x124b611d0>> 
     429Traceback (most recent call last): 
     430File
     431"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
     432packages/chimerax/core/graphics/opengl.py", line 1900, in __del__ 
     433raise RuntimeError('OpenGL buffer was not deleted before core.graphics.Buffer
     434destroyed') 
     435RuntimeError: OpenGL buffer was not deleted before core.graphics.Buffer
     436destroyed 
     437
     438No model specified for saving map 
     439
     440Traceback (most recent call last): 
     441  File
     442"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
     443packages/chimerax/ui/gui.py", line 744, in <lambda> 
     444    save_action.triggered.connect(lambda arg, s=self, sess=session:
     445s.file_save_cb(sess)) 
     446  File
     447"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
     448packages/chimerax/ui/gui.py", line 532, in file_save_cb 
     449    self.save_dialog.display(self, session) 
     450  File
     451"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
     452packages/chimerax/ui/save_dialog.py", line 141, in display 
     453    fmt.save(session, filename) 
     454  File
     455"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
     456packages/chimerax/ui/save_dialog.py", line 40, in save 
     457    return self._save(session, filename) 
     458  File
     459"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
     460packages/chimerax/ui/save_dialog.py", line 66, in <lambda> 
     461    fmt.export(ses, _add_missing_suffix(fn, fmt), fmt.name)) 
     462  File
     463"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
     464packages/chimerax/core/io.py", line 198, in export 
     465    result = self.export_func(session, path, **kw) 
     466  File
     467"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
     468packages/chimerax/wavefront_obj/__init__.py", line 37, in save_file 
     469    return obj.write_obj(session, path, models) 
     470  File
     471"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
     472packages/chimerax/wavefront_obj/obj.py", line 204, in write_obj 
     473    write_object(file, name, va, na, tca, ta, pos, obj_to_unity) 
     474  File
     475"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
     476packages/chimerax/wavefront_obj/obj.py", line 219, in write_object 
     477    file.write('o %s\n' % name) 
     478UnicodeEncodeError: 'ascii' codec can't encode character '\xc5' in position
     47931: ordinal not in range(128) 
     480 
     481
     482UnicodeEncodeError: 'ascii' codec can't encode character '\xc5' in position
     48331: ordinal not in range(128) 
     484 
     485File
     486"/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-
     487packages/chimerax/wavefront_obj/obj.py", line 219, in write_object 
     488file.write('o %s\n' % name) 
     489 
     490See log for complete Python traceback. 
     491 
     492If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and
     493describe what you were doing and include a copy of the contents of the log.
     494Don't include any data you wish to remain private since a publicly viewable
     495bug report will be created. 
     496
     497ui mousemode rightMode clip rotate
     498
     499ui mousemode rightMode clip rotate
     500
     501
     502
     503
     504OpenGL version: 4.1 ATI-1.68.20
     505OpenGL renderer: AMD Radeon Pro Vega 64 OpenGL Engine
     506OpenGL vendor: ATI Technologies Inc.
     507
     508}}}