| 2836 | | > hide #!5 models |
| 2837 | | |
| 2838 | | > hide #!6 models |
| 2839 | | |
| 2840 | | > hide #!2 models |
| 2841 | | |
| 2842 | | > hide #!4 models |
| 2843 | | |
| 2844 | | > show #!4 models |
| 2845 | | |
| 2846 | | > hide #!4 models |
| 2847 | | |
| 2848 | | > show #!4 models |
| 2849 | | |
| 2850 | | > hide #!4 models |
| 2851 | | |
| 2852 | | > show #!4 models |
| 2853 | | |
| 2854 | | > hide #!4 models |
| 2855 | | |
| 2856 | | > show #!4 models |
| 2857 | | |
| 2858 | | > hide #!4 models |
| 2859 | | |
| 2860 | | > show #!4 models |
| 2861 | | |
| 2862 | | > hide #!4 models |
| 2863 | | |
| 2864 | | > show #!4 models |
| 2865 | | |
| 2866 | | > hide #!4 models |
| 2867 | | |
| 2868 | | > show #!6 models |
| 2869 | | |
| 2870 | | > hide #!6 models |
| 2871 | | |
| 2872 | | > show #!6 models |
| 2873 | | |
| 2874 | | > hide #!6 models |
| 2875 | | |
| 2876 | | > show #!6 models |
| 2877 | | |
| 2878 | | > hide #!6 models |
| 2879 | | |
| 2880 | | > show #!6 models |
| 2881 | | |
| 2882 | | > hide #!6 models |
| 2883 | | |
| 2884 | | > show #!6 models |
| 2885 | | |
| 2886 | | > hide #!6 models |
| 2887 | | |
| 2888 | | > show #!6 models |
| 2889 | | |
| 2890 | | > hide #!6 models |
| 2891 | | |
| 2892 | | > show #!4 models |
| 2893 | | |
| 2894 | | > show #!5 models |
| 2895 | | |
| 2896 | | > hide #!5 models |
| 2897 | | |
| 2898 | | > hide #!4 models |
| 2899 | | |
| 2900 | | > show #!5 models |
| 2901 | | |
| 2902 | | > hide #!1 models |
| 2903 | | |
| 2904 | | > show #!4 models |
| 2905 | | |
| 2906 | | > hide #!5 models |
| 2907 | | |
| 2908 | | > show #!6 models |
| 2909 | | |
| 2910 | | > hide #!6 models |
| 2911 | | |
| 2912 | | > show #!2 models |
| 2913 | | |
| 2914 | | > show #!3 models |
| 2915 | | |
| 2916 | | > hide #!2 models |
| 2917 | | |
| 2918 | | > hide #!4 models |
| 2919 | | |
| 2920 | | > select #3: 184-187, 196-199 |
| 2921 | | |
| 2922 | | 384 atoms, 384 bonds, 48 residues, 1 model selected |
| 2923 | | |
| 2924 | | > ui tool show "Selection Inspector" |
| 2925 | | |
| 2926 | | > setattr sel r ss_type 2 |
| 2927 | | |
| 2928 | | Assigning ss_type attribute to 48 items |
| 2929 | | |
| 2930 | | > setattr sel r ss_id 1 |
| 2931 | | |
| 2932 | | Assigning ss_id attribute to 48 items |
| 2933 | | |
| 2934 | | > select clear |
| 2935 | | |
| 2936 | | > select #3/E:184 |
| 2937 | | |
| 2938 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 2939 | | |
| 2940 | | > ui tool show "Selection Inspector" |
| 2941 | | |
| 2942 | | > setattr sel r ss_type 0 |
| 2943 | | |
| 2944 | | Assigning ss_type attribute to 1 item |
| 2945 | | |
| 2946 | | > undo |
| 2947 | | |
| 2948 | | > select clear |
| 2949 | | |
| 2950 | | > show #!6 models |
| 2951 | | |
| 2952 | | > hide #!6 models |
| 2953 | | |
| 2954 | | > select #2 show sel ribbon |
| 2955 | | |
| 2956 | | Expected a keyword |
| 2957 | | |
| 2958 | | > select #2 |
| 2959 | | |
| 2960 | | 9648 atoms, 9924 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 2961 | | |
| 2962 | | > show sel ribbons |
| 2963 | | |
| 2964 | | > show #!2 models |
| 2965 | | |
| 2966 | | > select subtract #2 |
| 2967 | | |
| 2968 | | Nothing selected |
| 2969 | | |
| 2970 | | > view 1 |
| 2971 | | |
| 2972 | | > view orient |
| 2973 | | |
| 2974 | | > turn x 180 |
| 2975 | | |
| 2976 | | > turn y 180 |
| 2977 | | |
| 2978 | | > undo |
| 2979 | | |
| 2980 | | [Repeated 2 time(s)] |
| 2981 | | |
| 2982 | | > view orient |
| 2983 | | |
| 2984 | | > turn x 90 |
| 2985 | | |
| 2986 | | [Repeated 1 time(s)] |
| 2987 | | |
| 2988 | | > clip back 0 |
| 2989 | | |
| 2990 | | > hide #!2 models |
| 2991 | | |
| 2992 | | > hide #!3 models |
| 2993 | | |
| 2994 | | > show #!13 models |
| 2995 | | |
| 2996 | | > hide #!13 models |
| 2997 | | |
| 2998 | | > show #!1 models |
| 2999 | | |
| 3000 | | > save "C:/Users/OJS/OneDrive - |
| 3001 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 3002 | | |
| 3003 | | > select #1 |
| 3004 | | |
| 3005 | | 11514 atoms, 11832 bonds, 6 pseudobonds, 1230 residues, 2 models selected |
| 3006 | | |
| 3007 | | > show sel ribbons |
| 3008 | | |
| 3009 | | > select |
| 3010 | | > ::name="6OU"::name="AV0"::name="CBO"::name="CLR"::name="MC3"::name="PTY"::name="Y01" |
| 3011 | | |
| 3012 | | 6168 atoms, 6114 bonds, 204 residues, 4 models selected |
| 3013 | | |
| 3014 | | > show sel atoms |
| 3015 | | |
| 3016 | | > ~clip |
| 3017 | | |
| 3018 | | > select clear |
| 3019 | | |
| 3020 | | > select |
| 3021 | | > ::name="6OU"::name="AV0"::name="CBO"::name="CLR"::name="MC3"::name="PTY"::name="Y01" |
| 3022 | | |
| 3023 | | 6168 atoms, 6114 bonds, 204 residues, 4 models selected |
| 3024 | | |
| 3025 | | > color sel light gray |
| 3026 | | |
| 3027 | | > color sel byhetero |
| 3028 | | |
| 3029 | | > select clear |
| 3030 | | |
| 3031 | | > select #1/b,c,e,f |
| 3032 | | |
| 3033 | | 7676 atoms, 7886 bonds, 4 pseudobonds, 820 residues, 2 models selected |
| 3034 | | |
| 3035 | | > hide sel |
| 3036 | | |
| 3037 | | > hide sel atoms |
| 3038 | | |
| 3039 | | > hide sel ribbons |
| 3040 | | |
| 3041 | | > show #!13 models |
| 3042 | | |
| 3043 | | > volume #13 level 0.08867 |
| 3044 | | |
| 3045 | | > transparency 0 |
| 3046 | | |
| 3047 | | > volume #13 level 0.07274 |
| 3048 | | |
| 3049 | | > view orient |
| 3050 | | |
| 3051 | | > turn x 90 |
| 3052 | | |
| 3053 | | > clip front 0 |
| 3054 | | |
| 3055 | | > clip front 1 |
| 3056 | | |
| 3057 | | [Repeated 3 time(s)] |
| 3058 | | |
| 3059 | | > color #1 #bfbfbfff |
| 3060 | | |
| 3061 | | > undo |
| 3062 | | |
| 3063 | | > color #13 #bfbfbfff models |
| 3064 | | |
| 3065 | | > transparency 30 |
| 3066 | | |
| 3067 | | > save "C:/Users/OJS/OneDrive - |
| 3068 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/MBCD.cxs" |
| 3069 | | |
| 3070 | | > select # |
| 3071 | | |
| 3072 | | Expected an objects specifier or a keyword |
| 3073 | | |
| 3074 | | > select #1 |
| 3075 | | |
| 3076 | | 11514 atoms, 11832 bonds, 6 pseudobonds, 1230 residues, 2 models selected |
| 3077 | | |
| 3078 | | > show sel ribbons |
| 3079 | | |
| 3080 | | > ~clip |
| 3081 | | |
| 3082 | | > view orient |
| 3083 | | |
| 3084 | | > turn x 90 |
| 3085 | | |
| 3086 | | > clip front 0 |
| 3087 | | |
| 3088 | | > clip front 1 |
| 3089 | | |
| 3090 | | [Repeated 8 time(s)] |
| 3091 | | |
| 3092 | | > turn x 90 |
| 3093 | | |
| 3094 | | [Repeated 1 time(s)] |
| 3095 | | |
| 3096 | | > select clear |
| 3097 | | |
| 3098 | | > ~clip |
| 3099 | | |
| 3100 | | > show #!6 models |
| 3101 | | |
| 3102 | | > hide #!6 models |
| 3103 | | |
| 3104 | | > show #!4 models |
| 3105 | | |
| 3106 | | > hide #!4 models |
| 3107 | | |
| 3108 | | > show #!6 models |
| 3109 | | |
| 3110 | | > select #1,6:1-5 |
| 3111 | | |
| 3112 | | 384 atoms, 396 bonds, 48 residues, 2 models selected |
| 3113 | | |
| 3114 | | > show sel atoms |
| 3115 | | |
| 3116 | | > undo |
| 3117 | | |
| 3118 | | > select #1,6:4 |
| 3119 | | |
| 3120 | | 168 atoms, 180 bonds, 12 residues, 2 models selected |
| 3121 | | |
| 3122 | | > show sel atoms |
| 3123 | | |
| 3124 | | > select clear |
| 3125 | | |
| 3126 | | > hide #!6 models |
| 3127 | | |
| 3128 | | > save "C:/Users/OJS/OneDrive - |
| 3129 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 3130 | | |
| 3131 | | ——— End of log from Mon Sep 4 08:40:16 2023 ——— |
| 3132 | | |
| 3133 | | opened ChimeraX session |
| 3134 | | |
| 3135 | | > show #!16 models |
| 3136 | | |
| 3137 | | > hide #!16 models |
| 3138 | | |
| 3139 | | > show #!4 models |
| 3140 | | |
| 3141 | | > hide #!4 models |
| 3142 | | |
| 3143 | | > show #!4 models |
| 3144 | | |
| 3145 | | > hide #!13 models |
| 3146 | | |
| 3147 | | > show #!16 models |
| 3148 | | |
| 3149 | | > hide #!16 models |
| 3150 | | |
| 3151 | | > hide #!4 models |
| 3152 | | |
| 3153 | | > hide #!1 models |
| 3154 | | |
| 3155 | | > show #!6 models |
| 3156 | | |
| 3157 | | > show #!1 models |
| 3158 | | |
| 3159 | | > hide #!1 models |
| 3160 | | |
| 3161 | | > show #!18 models |
| 3162 | | |
| 3163 | | > volume #18 level 0.1492 |
| 3164 | | |
| 3165 | | > select #6 |
| 3166 | | |
| 3167 | | 11454 atoms, 11670 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 3168 | | |
| 3169 | | > show sel atoms |
| 3170 | | |
| 3171 | | > select clear |
| 3172 | | |
| 3173 | | > show #!4 models |
| 3174 | | |
| 3175 | | > el #4 |
| 3176 | | |
| 3177 | | Unknown command: el #4 |
| 3178 | | |
| 3179 | | > select #4 |
| 3180 | | |
| 3181 | | 11694 atoms, 11940 bonds, 6 pseudobonds, 1242 residues, 2 models selected |
| 3182 | | |
| 3183 | | > show sel atoms |
| 3184 | | |
| 3185 | | > select clear |
| 3186 | | |
| 3187 | | > show #!16 models |
| 3188 | | |
| 3189 | | > volume #16 level 0.1209 |
| 3190 | | |
| 3191 | | > volume #16 level 0.1095 |
| 3192 | | |
| 3193 | | > hide #!6 models |
| 3194 | | |
| 3195 | | > show #!6 models |
| 3196 | | |
| 3197 | | > hide #!6 models |
| 3198 | | |
| 3199 | | > show #!6 models |
| 3200 | | |
| 3201 | | > hide #!6 models |
| 3202 | | |
| 3203 | | > hide #!18 models |
| 3204 | | |
| 3205 | | > volume #16 level 0.09812 |
| 3206 | | |
| 3207 | | > show #!1 models |
| 3208 | | |
| 3209 | | > select |
| 3210 | | > ::name="6OU"::name="AV0"::name="CBO"::name="CLR"::name="MC3"::name="PTY"::name="Y01" |
| 3211 | | |
| 3212 | | 6168 atoms, 6114 bonds, 204 residues, 4 models selected |
| 3213 | | |
| 3214 | | > show sel atoms |
| 3215 | | |
| 3216 | | > select clear |
| 3217 | | |
| 3218 | | > hide #!4 models |
| 3219 | | |
| 3220 | | > show #!4 models |
| 3221 | | |
| 3222 | | > hide #!4 models |
| 3223 | | |
| 3224 | | > show #!4 models |
| 3225 | | |
| 3226 | | > hide #!4 models |
| 3227 | | |
| 3228 | | > close #1 |
| 3229 | | |
| 3230 | | > show #!2 models |
| 3231 | | |
| 3232 | | > hide #!2 models |
| 3233 | | |
| 3234 | | > show #!4 models |
| 3235 | | |
| 3236 | | > close #4 |
| 3237 | | |
| 3238 | | > close #5 |
| 3239 | | |
| 3240 | | > close #6 |
| 3241 | | |
| 3242 | | > transparency 0 |
| 3243 | | |
| 3244 | | > select clear |
| 3245 | | |
| 3246 | | [Repeated 1 time(s)] |
| 3247 | | |
| 3248 | | > open "C:/Users/OJS/OneDrive - |
| 3249 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/N55H_CBX_P52_J575_011_volume_map_sharp.mrc" |
| 3250 | | |
| 3251 | | Opened N55H_CBX_P52_J575_011_volume_map_sharp.mrc as #1, grid size |
| 3252 | | 400,400,400, pixel 0.83, shown at level 0.0684, step 2, values float32 |
| 3253 | | |
| 3254 | | > open "C:/Users/OJS/OneDrive - |
| 3255 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/N55H_CBX_P52_J650_003_volume_map_sharp.mrc" |
| 3256 | | |
| 3257 | | Opened N55H_CBX_P52_J650_003_volume_map_sharp.mrc as #4, grid size |
| 3258 | | 400,400,400, pixel 0.83, shown at level 0.0535, step 2, values float32 |
| 3259 | | |
| 3260 | | > open "C:/Users/OJS/OneDrive - |
| 3261 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/WT_PIP2_P68_J150_009_volume_map_sharp.mrc" |
| 3262 | | |
| 3263 | | Opened WT_PIP2_P68_J150_009_volume_map_sharp.mrc as #5, grid size 400,400,400, |
| 3264 | | pixel 0.848, shown at level 0.0605, step 2, values float32 |
| 3265 | | |
| 3266 | | > rename #1 id #20 |
| 3267 | | |
| 3268 | | > rename #2 id #1 |
| 3269 | | |
| 3270 | | > rename #3 id #3 |
| 3271 | | |
| 3272 | | Traceback (most recent call last): |
| 3273 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 3274 | | packages\chimerax\cmd_line\tool.py", line 319, in execute |
| 3275 | | cmd.run(cmd_text) |
| 3276 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 3277 | | packages\chimerax\core\commands\cli.py", line 2858, in run |
| 3278 | | self._process_keyword_arguments(final, prev_annos) |
| 3279 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 3280 | | packages\chimerax\core\commands\cli.py", line 2784, in |
| 3281 | | _process_keyword_arguments |
| 3282 | | value, text = self._parse_arg(anno, text, session, final) |
| 3283 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 3284 | | packages\chimerax\core\commands\cli.py", line 2488, in _parse_arg |
| 3285 | | value, replacement, rest = annotation.parse(text, session) |
| 3286 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 3287 | | packages\chimerax\core\commands\cli.py", line 532, in parse |
| 3288 | | value, consumed, rest = self.annotation.parse(text, |
| 3289 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 3290 | | packages\chimerax\core\commands\cli.py", line 723, in parse |
| 3291 | | value, new_text, rest = self.anno.parse(text, session) |
| 3292 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 3293 | | packages\chimerax\core\commands\cli.py", line 981, in parse |
| 3294 | | token, text, rest = next_token(text) |
| 3295 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 3296 | | packages\chimerax\core\commands\cli.py", line 1816, in next_token |
| 3297 | | assert text and not text[0].isspace() |
| 3298 | | AssertionError |
| 3299 | | |
| 3300 | | AssertionError |
| 3301 | | |
| 3302 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 3303 | | packages\chimerax\core\commands\cli.py", line 1816, in next_token |
| 3304 | | assert text and not text[0].isspace() |
| 3305 | | |
| 3306 | | See log for complete Python traceback. |
| 3307 | | |
| 3308 | | |
| 3309 | | > rename #3 id #30 |
| 3310 | | |
| 3311 | | > rename #1 id #31 |
| 3312 | | |
| 3313 | | > volume #4 step 1 |
| 3314 | | |
| 3315 | | > volume #5 step 1 |
| 3316 | | |
| 3317 | | > color #4 #ff557fff models |
| 3318 | | |
| 3319 | | > rename #18 id #1 |
| 3320 | | |
| 3321 | | > rename #5 id #2 |
| 3322 | | |
| 3323 | | > rename #16 id #3 |
| 3324 | | |
| 3325 | | > rename #4 id #5 |
| 3326 | | |
| 3327 | | > rename #20 id #4 |
| 3328 | | |
| 3329 | | > volume #5 level 0.09795 |
| 3330 | | |
| 3331 | | > select clear |
| 3332 | | |
| 3333 | | > color #2 #ff557fff models |
| 3334 | | |
| 3335 | | > color #4 #00aaffff models |
| 3336 | | |
| 3337 | | > color #5 #aa55ffff models |
| 3338 | | |
| 3339 | | > rename #5 id #6 |
| 3340 | | |
| 3341 | | > rename #17 id #5 |
| 3342 | | |
| 3343 | | > select clear |
| 3344 | | |
| 3345 | | > show #!31 models |
| 3346 | | |
| 3347 | | > hide #!31 models |
| 3348 | | |
| 3349 | | > show #!13 models |
| 3350 | | |
| 3351 | | > hide #!13 models |
| 3352 | | |
| 3353 | | > show #!13 models |
| 3354 | | |
| 3355 | | > hide #!13 models |
| 3356 | | |
| 3357 | | > rename #13 id #7 |
| 3358 | | |
| 3359 | | > ui tool show "Fit in Map" |
| 3360 | | |
| 3361 | | > hide #!4 models |
| 3362 | | |
| 3363 | | > show #!4 models |
| 3364 | | |
| 3365 | | > ui mousemode right "translate selected models" |
| 3366 | | |
| 3367 | | [Repeated 1 time(s)] |
| 3368 | | |
| 3369 | | > select add #4 |
| 3370 | | |
| 3371 | | 2 models selected |
| 3372 | | |
| 3373 | | > select subtract #4 |
| 3374 | | |
| 3375 | | Nothing selected |
| 3376 | | |
| 3377 | | > select add #4 |
| 3378 | | |
| 3379 | | 2 models selected |
| 3380 | | |
| 3381 | | > view matrix models #4,1,0,0,-150.64,0,1,0,-144.25,0,0,1,-50.389 |
| 3382 | | |
| 3383 | | > volume #4 level 0.2122 |
| 3384 | | |
| 3385 | | > view matrix models #4,1,0,0,-135.17,0,1,0,-128.66,0,0,1,-63.971 |
| 3386 | | |
| 3387 | | > view matrix models #4,1,0,0,-74.564,0,1,0,-55.349,0,0,1,-35.428 |
| 3388 | | |
| 3389 | | > fitmap #4 inMap #3 |
| 3390 | | |
| 3391 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3392 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3393 | | correlation = 0.566, correlation about mean = 0.07368, overlap = 281.7 |
| 3394 | | steps = 144, shift = 8.44, angle = 8.69 degrees |
| 3395 | | |
| 3396 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3397 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3398 | | Matrix rotation and translation |
| 3399 | | 0.97142270 -0.19986219 -0.12803534 47.55102644 |
| 3400 | | 0.19161482 0.97868349 -0.07390799 -18.24089784 |
| 3401 | | 0.14007748 0.04726243 0.98901191 -6.20771939 |
| 3402 | | Axis 0.24743038 -0.54748720 0.79939726 |
| 3403 | | Axis point 70.26112301 207.08693842 0.00000000 |
| 3404 | | Rotation angle (degrees) 14.17341924 |
| 3405 | | Shift along axis 16.78979278 |
| 3406 | | |
| 3407 | | |
| 3408 | | > view matrix models |
| 3409 | | > #4,0.98976,-0.034542,-0.13853,-16.623,0.027614,0.99828,-0.051624,-57.062,0.14008,0.04727,0.98901,-90.6 |
| 3410 | | |
| 3411 | | > view matrix models |
| 3412 | | > #4,0.98976,-0.034542,-0.13853,-20.711,0.027614,0.99828,-0.051624,-59.81,0.14008,0.04727,0.98901,-98.378 |
| 3413 | | |
| 3414 | | > view matrix models |
| 3415 | | > #4,0.98976,-0.034542,-0.13853,-23.761,0.027614,0.99828,-0.051624,-58.658,0.14008,0.04727,0.98901,-100.87 |
| 3416 | | |
| 3417 | | > fitmap #4 inMap #3 |
| 3418 | | |
| 3419 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3420 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3421 | | correlation = 0.7097, correlation about mean = 0.2041, overlap = 569.8 |
| 3422 | | steps = 140, shift = 7.11, angle = 13.1 degrees |
| 3423 | | |
| 3424 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3425 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3426 | | Matrix rotation and translation |
| 3427 | | 0.99971188 -0.02400344 -0.00000118 4.03258728 |
| 3428 | | 0.02400344 0.99971188 -0.00000036 -3.93668959 |
| 3429 | | 0.00000118 0.00000033 1.00000000 -5.01802421 |
| 3430 | | Axis 0.00001442 -0.00004915 1.00000000 |
| 3431 | | Axis point 166.00817820 166.01071000 0.00000000 |
| 3432 | | Rotation angle (degrees) 1.37542809 |
| 3433 | | Shift along axis -5.01777260 |
| 3434 | | |
| 3435 | | |
| 3436 | | > fitmap #4 inMap #3 |
| 3437 | | |
| 3438 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3439 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3440 | | correlation = 0.7097, correlation about mean = 0.2043, overlap = 570.2 |
| 3441 | | steps = 28, shift = 0.013, angle = 0.00292 degrees |
| 3442 | | |
| 3443 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3444 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3445 | | Matrix rotation and translation |
| 3446 | | 0.99971290 -0.02396092 0.00002047 4.02190904 |
| 3447 | | 0.02396092 0.99971290 0.00001744 -3.93279034 |
| 3448 | | -0.00002089 -0.00001695 1.00000000 -4.99849903 |
| 3449 | | Axis -0.00071754 0.00086308 0.99999937 |
| 3450 | | Axis point 165.93886282 165.71465837 0.00000000 |
| 3451 | | Rotation angle (degrees) 1.37299200 |
| 3452 | | Shift along axis -5.00477608 |
| 3453 | | |
| 3454 | | |
| 3455 | | > fitmap #4 inMap #3 |
| 3456 | | |
| 3457 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3458 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3459 | | correlation = 0.7097, correlation about mean = 0.2041, overlap = 569.9 |
| 3460 | | steps = 40, shift = 0.0106, angle = 0.00246 degrees |
| 3461 | | |
| 3462 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3463 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3464 | | Matrix rotation and translation |
| 3465 | | 0.99971372 -0.02392683 0.00000087 4.01924224 |
| 3466 | | 0.02392683 0.99971372 0.00000035 -3.92438522 |
| 3467 | | -0.00000088 -0.00000033 1.00000000 -5.01519921 |
| 3468 | | Axis -0.00001424 0.00003646 1.00000000 |
| 3469 | | Axis point 165.99456737 165.99143247 0.00000000 |
| 3470 | | Rotation angle (degrees) 1.37103717 |
| 3471 | | Shift along axis -5.01539949 |
| 3472 | | |
| 3473 | | |
| 3474 | | > view matrix models |
| 3475 | | > #4,0.9898,0.14244,-4.6291e-07,-78.88,-0.14244,0.9898,-7.4975e-06,-34.524,-6.0977e-07,7.487e-06,1,-61.157 |
| 3476 | | |
| 3477 | | > view matrix models |
| 3478 | | > #4,0.9898,0.14244,-4.6291e-07,-79.387,-0.14244,0.9898,-7.4975e-06,-34.479,-6.0977e-07,7.487e-06,1,-61.814 |
| 3479 | | |
| 3480 | | > fitmap #4 inMap #3 |
| 3481 | | |
| 3482 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3483 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3484 | | correlation = 0.9587, correlation about mean = 0.7509, overlap = 1067 |
| 3485 | | steps = 64, shift = 3.18, angle = 1.4 degrees |
| 3486 | | |
| 3487 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3488 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3489 | | Matrix rotation and translation |
| 3490 | | 0.99999987 0.00051706 0.00000932 -0.09443579 |
| 3491 | | -0.00051706 0.99999987 -0.00000388 0.09120000 |
| 3492 | | -0.00000932 0.00000387 1.00000000 -0.01620720 |
| 3493 | | Axis 0.00749297 0.01802491 -0.99980946 |
| 3494 | | Axis point 175.73777878 182.93451275 0.00000000 |
| 3495 | | Rotation angle (degrees) 0.02963088 |
| 3496 | | Shift along axis 0.01714038 |
| 3497 | | |
| 3498 | | |
| 3499 | | > fitmap #4 inMap #3 |
| 3500 | | |
| 3501 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3502 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3503 | | correlation = 0.9587, correlation about mean = 0.7508, overlap = 1067 |
| 3504 | | steps = 24, shift = 0.00307, angle = 0.00397 degrees |
| 3505 | | |
| 3506 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3507 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3508 | | Matrix rotation and translation |
| 3509 | | 0.99999987 0.00050374 -0.00005677 -0.08307581 |
| 3510 | | -0.00050374 0.99999988 0.00001220 0.08461456 |
| 3511 | | 0.00005678 -0.00001217 1.00000000 -0.02657311 |
| 3512 | | Axis -0.02403010 -0.11196666 -0.99342137 |
| 3513 | | Axis point 172.13618584 164.05853150 0.00000000 |
| 3514 | | Rotation angle (degrees) 0.02905344 |
| 3515 | | Shift along axis 0.01892060 |
| 3516 | | |
| 3517 | | |
| 3518 | | > fitmap #4 inMap #3 |
| 3519 | | |
| 3520 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3521 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3522 | | correlation = 0.9587, correlation about mean = 0.7507, overlap = 1067 |
| 3523 | | steps = 24, shift = 0.00324, angle = 0.00465 degrees |
| 3524 | | |
| 3525 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3526 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3527 | | Matrix rotation and translation |
| 3528 | | 0.99999987 0.00049069 -0.00013546 -0.07099614 |
| 3529 | | -0.00049069 0.99999988 -0.00000258 0.08318564 |
| 3530 | | 0.00013546 0.00000265 0.99999999 -0.04309415 |
| 3531 | | Axis 0.00514243 -0.26610458 -0.96393045 |
| 3532 | | Axis point 179.81793266 144.93413768 0.00000000 |
| 3533 | | Rotation angle (degrees) 0.02916634 |
| 3534 | | Shift along axis 0.01903859 |
| 3535 | | |
| 3536 | | |
| 3537 | | > fitmap #4 inMap #3 |
| 3538 | | |
| 3539 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3540 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3541 | | correlation = 0.9587, correlation about mean = 0.7507, overlap = 1067 |
| 3542 | | steps = 28, shift = 0.0234, angle = 0.0226 degrees |
| 3543 | | |
| 3544 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3545 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3546 | | Matrix rotation and translation |
| 3547 | | 0.99999986 0.00045900 0.00025585 -0.10470745 |
| 3548 | | -0.00045900 0.99999990 0.00003178 0.07111576 |
| 3549 | | -0.00025584 -0.00003190 0.99999997 0.02647488 |
| 3550 | | Axis -0.06047569 0.48597616 -0.87187721 |
| 3551 | | Axis point 136.02649021 225.81743099 0.00000000 |
| 3552 | | Rotation angle (degrees) 0.03016334 |
| 3553 | | Shift along axis 0.01780998 |
| 3554 | | |
| 3555 | | |
| 3556 | | > fitmap #4 inMap #3 |
| 3557 | | |
| 3558 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3559 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3560 | | correlation = 0.9587, correlation about mean = 0.7508, overlap = 1067 |
| 3561 | | steps = 28, shift = 0.0231, angle = 0.0285 degrees |
| 3562 | | |
| 3563 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3564 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3565 | | Matrix rotation and translation |
| 3566 | | 0.99999985 0.00049981 -0.00023739 -0.05593434 |
| 3567 | | -0.00049981 0.99999988 -0.00001471 0.08606075 |
| 3568 | | 0.00023738 0.00001483 0.99999997 -0.06129699 |
| 3569 | | Axis 0.02667770 -0.42886754 -0.90297339 |
| 3570 | | Axis point 186.70250507 112.87431743 0.00000000 |
| 3571 | | Rotation angle (degrees) 0.03171387 |
| 3572 | | Shift along axis 0.01694869 |
| 3573 | | |
| 3574 | | |
| 3575 | | > fitmap #4 inMap #3 |
| 3576 | | |
| 3577 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3578 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3579 | | correlation = 0.9587, correlation about mean = 0.7507, overlap = 1067 |
| 3580 | | steps = 24, shift = 0.00184, angle = 0.00252 degrees |
| 3581 | | |
| 3582 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3583 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3584 | | Matrix rotation and translation |
| 3585 | | 0.99999984 0.00050050 -0.00027397 -0.05138794 |
| 3586 | | -0.00050049 0.99999988 0.00000962 0.08327743 |
| 3587 | | 0.00027397 -0.00000948 0.99999997 -0.06436354 |
| 3588 | | Axis -0.01673043 -0.48009792 -0.87705535 |
| 3589 | | Axis point 182.98790105 102.15437563 0.00000000 |
| 3590 | | Rotation angle (degrees) 0.03269601 |
| 3591 | | Shift along axis 0.01732881 |
| 3592 | | |
| 3593 | | |
| 3594 | | > fitmap #4 inMap #3 |
| 3595 | | |
| 3596 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3597 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3598 | | correlation = 0.9587, correlation about mean = 0.7507, overlap = 1067 |
| 3599 | | steps = 28, shift = 0.0234, angle = 0.0277 degrees |
| 3600 | | |
| 3601 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3602 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3603 | | Matrix rotation and translation |
| 3604 | | 0.99999985 0.00052032 0.00020881 -0.10824212 |
| 3605 | | -0.00052032 0.99999987 0.00002645 0.08212967 |
| 3606 | | -0.00020880 -0.00002656 0.99999998 0.01945093 |
| 3607 | | Axis -0.04722335 0.37201213 -0.92702585 |
| 3608 | | Axis point 145.18238879 206.47405714 0.00000000 |
| 3609 | | Rotation angle (degrees) 0.03215898 |
| 3610 | | Shift along axis 0.01763327 |
| 3611 | | |
| 3612 | | |
| 3613 | | > fitmap #4 inMap #3 |
| 3614 | | |
| 3615 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3616 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3617 | | correlation = 0.9586, correlation about mean = 0.7503, overlap = 1066 |
| 3618 | | steps = 28, shift = 0.0156, angle = 0.0136 degrees |
| 3619 | | |
| 3620 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3621 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3622 | | Matrix rotation and translation |
| 3623 | | 0.99999982 0.00058733 0.00012275 -0.11625961 |
| 3624 | | -0.00058731 0.99999981 -0.00018433 0.12289576 |
| 3625 | | -0.00012286 0.00018426 0.99999998 -0.04058302 |
| 3626 | | Axis 0.29361339 0.19564077 -0.93569005 |
| 3627 | | Axis point 199.89590109 211.94434509 0.00000000 |
| 3628 | | Rotation angle (degrees) 0.03596388 |
| 3629 | | Shift along axis 0.02788117 |
| 3630 | | |
| 3631 | | |
| 3632 | | > fitmap #4 inMap #3 |
| 3633 | | |
| 3634 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3635 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3636 | | correlation = 0.9587, correlation about mean = 0.7508, overlap = 1067 |
| 3637 | | steps = 44, shift = 0.0169, angle = 0.0201 degrees |
| 3638 | | |
| 3639 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3640 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3641 | | Matrix rotation and translation |
| 3642 | | 0.99999986 0.00052729 -0.00000625 -0.08587506 |
| 3643 | | -0.00052728 0.99999985 0.00013701 0.07412074 |
| 3644 | | 0.00000632 -0.00013701 0.99999999 0.00276735 |
| 3645 | | Axis -0.25147674 -0.01153353 -0.96779462 |
| 3646 | | Axis point 140.92209352 154.28498966 0.00000000 |
| 3647 | | Rotation angle (degrees) 0.03121660 |
| 3648 | | Shift along axis 0.01806248 |
| 3649 | | |
| 3650 | | |
| 3651 | | > fitmap #4 inMap #3 |
| 3652 | | |
| 3653 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3654 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3655 | | correlation = 0.9587, correlation about mean = 0.7508, overlap = 1067 |
| 3656 | | steps = 24, shift = 0.00155, angle = 0.0016 degrees |
| 3657 | | |
| 3658 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3659 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3660 | | Matrix rotation and translation |
| 3661 | | 0.99999988 0.00050193 -0.00001176 -0.08101802 |
| 3662 | | -0.00050193 0.99999987 0.00014714 0.06981900 |
| 3663 | | 0.00001183 -0.00014713 0.99999999 0.00375471 |
| 3664 | | Axis -0.28122723 -0.02254551 -0.95937633 |
| 3665 | | Axis point 139.85056452 151.58173138 0.00000000 |
| 3666 | | Rotation angle (degrees) 0.02997629 |
| 3667 | | Shift along axis 0.01760819 |
| 3668 | | |
| 3669 | | |
| 3670 | | > fitmap #4 inMap #3 |
| 3671 | | |
| 3672 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3673 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3674 | | correlation = 0.9587, correlation about mean = 0.7508, overlap = 1067 |
| 3675 | | steps = 24, shift = 0.000724, angle = 0.00078 degrees |
| 3676 | | |
| 3677 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3678 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3679 | | Matrix rotation and translation |
| 3680 | | 0.99999988 0.00050390 -0.00000915 -0.08147056 |
| 3681 | | -0.00050390 0.99999986 0.00016035 0.06870207 |
| 3682 | | 0.00000923 -0.00016035 0.99999999 0.00631042 |
| 3683 | | Axis -0.30318362 -0.01738486 -0.95277356 |
| 3684 | | Axis point 136.90181249 151.18802068 0.00000000 |
| 3685 | | Rotation angle (degrees) 0.03030257 |
| 3686 | | Shift along axis 0.01749376 |
| 3687 | | |
| 3688 | | |
| 3689 | | > fitmap #4 inMap #3 |
| 3690 | | |
| 3691 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 3692 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12611 points |
| 3693 | | correlation = 0.9587, correlation about mean = 0.7508, overlap = 1067 |
| 3694 | | steps = 24, shift = 0.000717, angle = 0.000689 degrees |
| 3695 | | |
| 3696 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 3697 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3698 | | Matrix rotation and translation |
| 3699 | | 0.99999988 0.00050444 -0.00000942 -0.08144605 |
| 3700 | | -0.00050444 0.99999986 0.00017237 0.06754947 |
| 3701 | | 0.00000950 -0.00017236 0.99999999 0.00801953 |
| 3702 | | Axis -0.32328864 -0.01774544 -0.94613400 |
| 3703 | | Axis point 134.48505551 150.24829528 0.00000000 |
| 3704 | | Rotation angle (degrees) 0.03054773 |
| 3705 | | Shift along axis 0.01754434 |
| 3706 | | |
| 3707 | | |
| 3708 | | > hide #!4 models |
| 3709 | | |
| 3710 | | > select subtract #4 |
| 3711 | | |
| 3712 | | Nothing selected |
| 3713 | | |
| 3714 | | > select add #2 |
| 3715 | | |
| 3716 | | 2 models selected |
| 3717 | | |
| 3718 | | > view matrix models #2,1,0,0,-58.696,0,1,0,-12.967,0,0,1,-6.6108 |
| 3719 | | |
| 3720 | | > view matrix models #2,1,0,0,-81.089,0,1,0,-113.09,0,0,1,-99.949 |
| 3721 | | |
| 3722 | | > volume #2 level 0.2715 |
| 3723 | | |
| 3724 | | > view matrix models #2,1,0,0,-49.814,0,1,0,-63.08,0,0,1,-82.861 |
| 3725 | | |
| 3726 | | > view matrix models #2,1,0,0,-56.104,0,1,0,-62.628,0,0,1,-83.714 |
| 3727 | | |
| 3728 | | > fitmap #2 inMap #3 |
| 3729 | | |
| 3730 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 3731 | | N55H_CBX_P52_J575_011_volume_map.mrc using 59234 points |
| 3732 | | correlation = 0.933, correlation about mean = 0.5608, overlap = 5503 |
| 3733 | | steps = 152, shift = 13.6, angle = 11 degrees |
| 3734 | | |
| 3735 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) relative to |
| 3736 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3737 | | Matrix rotation and translation |
| 3738 | | 0.93622630 -0.35139758 0.00023499 66.78045556 |
| 3739 | | 0.35139760 0.93622632 -0.00005626 -52.37394220 |
| 3740 | | -0.00020024 0.00013525 0.99999997 -7.23552155 |
| 3741 | | Axis 0.00027250 0.00061929 0.99999977 |
| 3742 | | Axis point 177.67096159 157.80329811 0.00000000 |
| 3743 | | Rotation angle (degrees) 20.57282665 |
| 3744 | | Shift along axis -7.24975688 |
| 3745 | | |
| 3746 | | |
| 3747 | | > fitmap #2 inMap #3 |
| 3748 | | |
| 3749 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 3750 | | N55H_CBX_P52_J575_011_volume_map.mrc using 59234 points |
| 3751 | | correlation = 0.933, correlation about mean = 0.5609, overlap = 5503 |
| 3752 | | steps = 28, shift = 0.00483, angle = 0.0216 degrees |
| 3753 | | |
| 3754 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) relative to |
| 3755 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3756 | | Matrix rotation and translation |
| 3757 | | 0.93609694 -0.35174208 0.00019473 66.86606025 |
| 3758 | | 0.35174209 0.93609696 0.00001226 -52.41982065 |
| 3759 | | -0.00018660 0.00005702 0.99999998 -7.22865825 |
| 3760 | | Axis 0.00006363 0.00054207 0.99999985 |
| 3761 | | Axis point 177.68987261 157.81903145 0.00000000 |
| 3762 | | Rotation angle (degrees) 20.59390887 |
| 3763 | | Shift along axis -7.25281791 |
| 3764 | | |
| 3765 | | |
| 3766 | | > fitmap #2 inMap #3 |
| 3767 | | |
| 3768 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 3769 | | N55H_CBX_P52_J575_011_volume_map.mrc using 59234 points |
| 3770 | | correlation = 0.933, correlation about mean = 0.561, overlap = 5503 |
| 3771 | | steps = 44, shift = 0.016, angle = 0.0107 degrees |
| 3772 | | |
| 3773 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) relative to |
| 3774 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3775 | | Matrix rotation and translation |
| 3776 | | 0.93613085 -0.35165187 0.00003575 66.87067994 |
| 3777 | | 0.35165187 0.93613085 0.00000027 -52.40843031 |
| 3778 | | -0.00003357 0.00001232 1.00000000 -7.23105863 |
| 3779 | | Axis 0.00001714 0.00009857 0.99999999 |
| 3780 | | Axis point 177.70905327 157.88534746 0.00000000 |
| 3781 | | Rotation angle (degrees) 20.58838415 |
| 3782 | | Shift along axis -7.23507783 |
| 3783 | | |
| 3784 | | |
| 3785 | | > fitmap #2 inMap #3 |
| 3786 | | |
| 3787 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 3788 | | N55H_CBX_P52_J575_011_volume_map.mrc using 59234 points |
| 3789 | | correlation = 0.933, correlation about mean = 0.5609, overlap = 5503 |
| 3790 | | steps = 28, shift = 0.00777, angle = 0.0155 degrees |
| 3791 | | |
| 3792 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) relative to |
| 3793 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 3794 | | Matrix rotation and translation |
| 3795 | | 0.93619838 -0.35147197 0.00022637 66.80227817 |
| 3796 | | 0.35147198 0.93619840 -0.00000712 -52.38912881 |
| 3797 | | -0.00020943 0.00008623 0.99999998 -7.21919020 |
| 3798 | | Axis 0.00013281 0.00061997 0.99999980 |
| 3799 | | Axis point 177.69057937 157.81142666 0.00000000 |
| 3800 | | Rotation angle (degrees) 20.57737844 |
| 3801 | | Shift along axis -7.24279676 |
| 3802 | | |
| 3803 | | |
| 3804 | | > show #!1 models |
| 3805 | | |
| 3806 | | > hide #!3 models |
| 3807 | | |
| 3808 | | > volume sdLevel 7 |
| 3809 | | |
| 3810 | | > volume sdLevel 8 |
| 3811 | | |
| 3812 | | > select clear |
| 3813 | | |
| 3814 | | > hide #!2 models |
| 3815 | | |
| 3816 | | > show #!2 models |
| 3817 | | |
| 3818 | | > hide #!2 models |
| 3819 | | |
| 3820 | | > show #!2 models |
| 3821 | | |
| 3822 | | > hide #!1 models |
| 3823 | | |
| 3824 | | > show #!1 models |
| 3825 | | |
| 3826 | | > hide #!1 models |
| 3827 | | |
| 3828 | | > show #!1 models |
| 3829 | | |
| 3830 | | > hide #!2 models |
| 3831 | | |
| 3832 | | > show #!3 models |
| 3833 | | |
| 3834 | | > show #!4 models |
| 3835 | | |
| 3836 | | > hide #!4 models |
| 3837 | | |
| 3838 | | > hide #!3 models |
| 3839 | | |
| 3840 | | > show #!5 models |
| 3841 | | |
| 3842 | | > select add #6 |
| 3843 | | |
| 3844 | | 2 models selected |
| 3845 | | |
| 3846 | | > view matrix models #6,1,0,0,-61.36,0,1,0,-53.004,0,0,1,-86.824 |
| 3847 | | |
| 3848 | | > view matrix models #6,1,0,0,-52.483,0,1,0,-64.661,0,0,1,-83.982 |
| 3849 | | |
| 3850 | | > view matrix models #6,1,0,0,-63.491,0,1,0,-57.837,0,0,1,-61.241 |
| 3851 | | |
| 3852 | | > view matrix models #6,1,0,0,-58.15,0,1,0,-53.383,0,0,1,-64.258 |
| 3853 | | |
| 3854 | | > ui mousemode right "rotate selected models" |
| 3855 | | |
| 3856 | | > view matrix models |
| 3857 | | > #6,0.97079,-0.20495,0.12477,-39.258,0.20662,0.97842,-0.00048102,-84.022,-0.12198,0.026247,0.99219,-47.115 |
| 3858 | | |
| 3859 | | > view matrix models |
| 3860 | | > #6,0.95011,-0.30717,-0.054254,9.8104,0.31056,0.94778,0.072594,-107.89,0.029122,-0.085821,0.99588,-54.187 |
| 3861 | | |
| 3862 | | > view matrix models |
| 3863 | | > #6,0.8908,-0.45359,0.026975,30.955,0.45147,0.89023,0.060605,-119.81,-0.051504,-0.041809,0.9978,-48.416 |
| 3864 | | |
| 3865 | | > fitmap #6 inMap #5 |
| 3866 | | |
| 3867 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 3868 | | N55H_CBX_P52_J650_003_volume_map.mrc using 82839 points |
| 3869 | | correlation = 0.9776, correlation about mean = 0.7765, overlap = 3191 |
| 3870 | | steps = 76, shift = 4.21, angle = 3.81 degrees |
| 3871 | | |
| 3872 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 3873 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 3874 | | Matrix rotation and translation |
| 3875 | | 0.99999999 -0.00012221 0.00003174 0.01872053 |
| 3876 | | 0.00012221 0.99999999 0.00001278 -0.01699945 |
| 3877 | | -0.00003175 -0.00001277 1.00000000 -0.01106755 |
| 3878 | | Axis -0.10065730 0.25013285 0.96296504 |
| 3879 | | Axis point 104.73426777 139.34183493 0.00000000 |
| 3880 | | Rotation angle (degrees) 0.00727152 |
| 3881 | | Shift along axis -0.01679415 |
| 3882 | | |
| 3883 | | |
| 3884 | | > select clear |
| 3885 | | |
| 3886 | | > hide #!6 models |
| 3887 | | |
| 3888 | | > hide #!5 models |
| 3889 | | |
| 3890 | | > hide #!1 models |
| 3891 | | |
| 3892 | | > show #!3 models |
| 3893 | | |
| 3894 | | > show #!1 models |
| 3895 | | |
| 3896 | | > hide #!3 models |
| 3897 | | |
| 3898 | | > select clear |
| 3899 | | |
| 3900 | | > save "C:/Users/OJS/OneDrive - |
| 3901 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 3902 | | |
| 3903 | | > show #!7 models |
| 3904 | | |
| 3905 | | > hide #!7 models |
| 3906 | | |
| 3907 | | > open "C:/Users/OJS/OneDrive - |
| 3908 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/cryosparc_P58_cryosparc_P58_J139_004_volume_map.mrc" |
| 3909 | | |
| 3910 | | Opened cryosparc_P58_cryosparc_P58_J139_004_volume_map.mrc as #8, grid size |
| 3911 | | 256,256,256, pixel 1.1, shown at level 0.213, step 1, values float32 |
| 3912 | | |
| 3913 | | > open "C:/Users/OJS/OneDrive - |
| 3914 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/cryosparc_P58_cryosparc_P58_J139_004_volume_map_sharp.mrc" |
| 3915 | | |
| 3916 | | Opened cryosparc_P58_cryosparc_P58_J139_004_volume_map_sharp.mrc as #9, grid |
| 3917 | | size 256,256,256, pixel 1.1, shown at level 0.251, step 1, values float32 |
| 3918 | | |
| 3919 | | > volume #9 level 1.218 |
| 3920 | | |
| 3921 | | > volume #8 level 0.6713 |
| 3922 | | |
| 3923 | | > volume #9 level 0.6751 |
| 3924 | | |
| 3925 | | > color #8 #ffaaffff models |
| 3926 | | |
| 3927 | | > select add #8 |
| 3928 | | |
| 3929 | | 2 models selected |
| 3930 | | |
| 3931 | | > view matrix models |
| 3932 | | > #8,0.96553,-0.18609,0.18199,6.3063,0.21509,0.96418,-0.15525,-4.1292,-0.14658,0.18904,0.97097,-2.0301 |
| 3933 | | |
| 3934 | | > ui mousemode right "translate selected models" |
| 3935 | | |
| 3936 | | > view matrix models |
| 3937 | | > #8,0.96553,-0.18609,0.18199,-15.163,0.21509,0.96418,-0.15525,-44.599,-0.14658,0.18904,0.97097,-40.253 |
| 3938 | | |
| 3939 | | > close #8-9 |
| 3940 | | |
| 3941 | | > open "C:/Users/OJS/OneDrive - |
| 3942 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/POPE_C6_P58_J139_004_volume_map.mrc" |
| 3943 | | |
| 3944 | | Opened POPE_C6_P58_J139_004_volume_map.mrc as #8, grid size 256,256,256, pixel |
| 3945 | | 1.1, shown at level 0.213, step 1, values float32 |
| 3946 | | |
| 3947 | | > open "C:/Users/OJS/OneDrive - |
| 3948 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/POPE_C6_P58_J139_004_volume_map_sharp.mrc" |
| 3949 | | |
| 3950 | | Opened POPE_C6_P58_J139_004_volume_map_sharp.mrc as #9, grid size 256,256,256, |
| 3951 | | pixel 1.1, shown at level 0.251, step 1, values float32 |
| 3952 | | |
| 3953 | | > open "C:/Users/OJS/OneDrive - |
| 3954 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/MBCD_P41_J50_013_volume_map_sharp.mrc" |
| 3955 | | |
| 3956 | | Opened MBCD_P41_J50_013_volume_map_sharp.mrc as #10, grid size 256,256,256, |
| 3957 | | pixel 0.848, shown at level 0.101, step 1, values float32 |
| 3958 | | |
| 3959 | | > open "C:/Users/OJS/OneDrive - |
| 3960 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/MBCD_P41_J50_013_volume_map.mrc" |
| 3961 | | |
| 3962 | | Opened MBCD_P41_J50_013_volume_map.mrc as #11, grid size 256,256,256, pixel |
| 3963 | | 0.848, shown at level 0.0557, step 1, values float32 |
| 3964 | | |
| 3965 | | > close #7 |
| 3966 | | |
| 3967 | | > color #9 #ffaaffff models |
| 3968 | | |
| 3969 | | > color #8 #ffaaffff models |
| 3970 | | |
| 3971 | | > color #10 #55ff7fff models |
| 3972 | | |
| 3973 | | > color #10 #ffff7fff models |
| 3974 | | |
| 3975 | | > color #11 #ffff7fff models |
| 3976 | | |
| 3977 | | > rename #8 id #13 |
| 3978 | | |
| 3979 | | > rename #9 id #21 |
| 3980 | | |
| 3981 | | > rename #10 id #8 |
| 3982 | | |
| 3983 | | > rename #11 id #7 |
| 3984 | | |
| 3985 | | > rename #13 id #9 |
| 3986 | | |
| 3987 | | > rename #21 id #10 |
| 3988 | | |
| 3989 | | > hide #!10 models |
| 3990 | | |
| 3991 | | > hide #!9 models |
| 3992 | | |
| 3993 | | > hide #!8 models |
| 3994 | | |
| 3995 | | > show #!2 models |
| 3996 | | |
| 3997 | | > hide #!2 models |
| 3998 | | |
| 3999 | | > show #!2 models |
| 4000 | | |
| 4001 | | > hide #!2 models |
| 4002 | | |
| 4003 | | > hide #!1 models |
| 4004 | | |
| 4005 | | > show #!1 models |
| 4006 | | |
| 4007 | | > show #!2 models |
| 4008 | | |
| 4009 | | > hide #!2 models |
| 4010 | | |
| 4011 | | > hide #!7 models |
| 4012 | | |
| 4013 | | > show #!3 models |
| 4014 | | |
| 4015 | | > hide #!3 models |
| 4016 | | |
| 4017 | | > show #!2 models |
| 4018 | | |
| 4019 | | > fitmap #2 inMap #1 |
| 4020 | | |
| 4021 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 4022 | | WT_PIP2_P68_J150_009_volume_map.mrc using 99815 points |
| 4023 | | correlation = 0.971, correlation about mean = 0.8369, overlap = 7482 |
| 4024 | | steps = 36, shift = 0.0243, angle = 0.112 degrees |
| 4025 | | |
| 4026 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) relative to |
| 4027 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4028 | | Matrix rotation and translation |
| 4029 | | 0.49970799 0.86619393 -0.00002337 -62.05407727 |
| 4030 | | -0.86619393 0.49970799 0.00007907 231.75074858 |
| 4031 | | 0.00008016 -0.00001926 1.00000000 -0.01079889 |
| 4032 | | Axis -0.00005676 -0.00005976 -1.00000000 |
| 4033 | | Axis point 169.59688604 169.59486668 0.00000000 |
| 4034 | | Rotation angle (degrees) 60.01931727 |
| 4035 | | Shift along axis 0.00047163 |
| 4036 | | |
| 4037 | | |
| 4038 | | > fitmap #2 inMap #1 |
| 4039 | | |
| 4040 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 4041 | | WT_PIP2_P68_J150_009_volume_map.mrc using 99815 points |
| 4042 | | correlation = 0.971, correlation about mean = 0.8369, overlap = 7481 |
| 4043 | | steps = 24, shift = 0.00291, angle = 0.0063 degrees |
| 4044 | | |
| 4045 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) relative to |
| 4046 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4047 | | Matrix rotation and translation |
| 4048 | | 0.49980261 0.86613934 -0.00001065 -62.06167817 |
| 4049 | | -0.86613934 0.49980262 0.00008105 231.72651458 |
| 4050 | | 0.00007552 -0.00003128 1.00000000 -0.01013927 |
| 4051 | | Axis -0.00006485 -0.00004974 -1.00000000 |
| 4052 | | Axis point 169.59740860 169.59610594 0.00000000 |
| 4053 | | Rotation angle (degrees) 60.01305814 |
| 4054 | | Shift along axis 0.00263747 |
| 4055 | | |
| 4056 | | |
| 4057 | | > fitmap #2 inMap #1 |
| 4058 | | |
| 4059 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 4060 | | WT_PIP2_P68_J150_009_volume_map.mrc using 99815 points |
| 4061 | | correlation = 0.971, correlation about mean = 0.8369, overlap = 7481 |
| 4062 | | steps = 24, shift = 0.000954, angle = 0.00229 degrees |
| 4063 | | |
| 4064 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) relative to |
| 4065 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4066 | | Matrix rotation and translation |
| 4067 | | 0.49982438 0.86612678 -0.00000503 -62.06333623 |
| 4068 | | -0.86612678 0.49982438 0.00011166 231.71578740 |
| 4069 | | 0.00009922 -0.00005145 1.00000000 -0.01109958 |
| 4070 | | Axis -0.00009416 -0.00006018 -0.99999999 |
| 4071 | | Axis point 169.59311194 169.59373665 0.00000000 |
| 4072 | | Rotation angle (degrees) 60.01161872 |
| 4073 | | Shift along axis 0.00299809 |
| 4074 | | |
| 4075 | | |
| 4076 | | > fitmap #2 inMap #1 |
| 4077 | | |
| 4078 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 4079 | | WT_PIP2_P68_J150_009_volume_map.mrc using 99815 points |
| 4080 | | correlation = 0.971, correlation about mean = 0.8368, overlap = 7480 |
| 4081 | | steps = 24, shift = 0.000894, angle = 0.00187 degrees |
| 4082 | | |
| 4083 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) relative to |
| 4084 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4085 | | Matrix rotation and translation |
| 4086 | | 0.49983338 0.86612158 0.00000375 -62.06467769 |
| 4087 | | -0.86612158 0.49983338 0.00014133 231.70881549 |
| 4088 | | 0.00012053 -0.00007388 1.00000000 -0.01094781 |
| 4089 | | Axis -0.00012424 -0.00006742 -0.99999999 |
| 4090 | | Axis point 169.58881342 169.59205723 0.00000000 |
| 4091 | | Rotation angle (degrees) 60.01102315 |
| 4092 | | Shift along axis 0.00303711 |
| 4093 | | |
| 4094 | | |
| 4095 | | > hide #!2 models |
| 4096 | | |
| 4097 | | > show #!3 models |
| 4098 | | |
| 4099 | | > fitmap #3 inMap #1 |
| 4100 | | |
| 4101 | | Fit map N55H_CBX_P52_J575_011_volume_map.mrc in map |
| 4102 | | WT_PIP2_P68_J150_009_volume_map.mrc using 139334 points |
| 4103 | | correlation = 0.9577, correlation about mean = 0.7565, overlap = 4265 |
| 4104 | | steps = 28, shift = 0.0122, angle = 0.0223 degrees |
| 4105 | | |
| 4106 | | Position of N55H_CBX_P52_J575_011_volume_map.mrc (#3) relative to |
| 4107 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4108 | | Matrix rotation and translation |
| 4109 | | 0.16490323 0.98630975 -0.00006520 -21.50055957 |
| 4110 | | -0.98630975 0.16490323 -0.00004310 305.95546684 |
| 4111 | | -0.00003176 0.00007142 1.00000000 7.24393104 |
| 4112 | | Axis 0.00005806 -0.00001695 -1.00000000 |
| 4113 | | Axis point 169.92763744 165.67428224 0.00000000 |
| 4114 | | Rotation angle (degrees) 80.50838717 |
| 4115 | | Shift along axis -7.25036597 |
| 4116 | | |
| 4117 | | |
| 4118 | | > fitmap #3 inMap #1 |
| 4119 | | |
| 4120 | | Fit map N55H_CBX_P52_J575_011_volume_map.mrc in map |
| 4121 | | WT_PIP2_P68_J150_009_volume_map.mrc using 139334 points |
| 4122 | | correlation = 0.9577, correlation about mean = 0.7566, overlap = 4265 |
| 4123 | | steps = 28, shift = 0.0187, angle = 0.0127 degrees |
| 4124 | | |
| 4125 | | Position of N55H_CBX_P52_J575_011_volume_map.mrc (#3) relative to |
| 4126 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4127 | | Matrix rotation and translation |
| 4128 | | 0.16490975 0.98630865 0.00012942 -21.51548252 |
| 4129 | | -0.98630866 0.16490975 0.00006150 305.94485424 |
| 4130 | | 0.00003931 -0.00013778 0.99999999 7.26611301 |
| 4131 | | Axis -0.00010102 0.00004568 -0.99999999 |
| 4132 | | Axis point 169.91481172 165.67878216 0.00000000 |
| 4133 | | Rotation angle (degrees) 80.50800831 |
| 4134 | | Shift along axis -7.24996443 |
| 4135 | | |
| 4136 | | |
| 4137 | | > fitmap #3 inMap #1 |
| 4138 | | |
| 4139 | | Fit map N55H_CBX_P52_J575_011_volume_map.mrc in map |
| 4140 | | WT_PIP2_P68_J150_009_volume_map.mrc using 139334 points |
| 4141 | | correlation = 0.9577, correlation about mean = 0.7565, overlap = 4265 |
| 4142 | | steps = 28, shift = 0.0187, angle = 0.013 degrees |
| 4143 | | |
| 4144 | | Position of N55H_CBX_P52_J575_011_volume_map.mrc (#3) relative to |
| 4145 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4146 | | Matrix rotation and translation |
| 4147 | | 0.16495336 0.98630137 -0.00007805 -21.50658770 |
| 4148 | | -0.98630137 0.16495337 -0.00001912 305.94552559 |
| 4149 | | -0.00000599 0.00008014 1.00000000 7.23736421 |
| 4150 | | Axis 0.00005032 -0.00003653 -1.00000000 |
| 4151 | | Axis point 169.92795262 165.67348837 0.00000000 |
| 4152 | | Rotation angle (degrees) 80.50547464 |
| 4153 | | Shift along axis -7.24962309 |
| 4154 | | |
| 4155 | | |
| 4156 | | > fitmap #3 inMap #1 |
| 4157 | | |
| 4158 | | Fit map N55H_CBX_P52_J575_011_volume_map.mrc in map |
| 4159 | | WT_PIP2_P68_J150_009_volume_map.mrc using 139334 points |
| 4160 | | correlation = 0.9577, correlation about mean = 0.7565, overlap = 4265 |
| 4161 | | steps = 28, shift = 0.0204, angle = 0.0134 degrees |
| 4162 | | |
| 4163 | | Position of N55H_CBX_P52_J575_011_volume_map.mrc (#3) relative to |
| 4164 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4165 | | Matrix rotation and translation |
| 4166 | | 0.16491917 0.98630707 0.00015157 -21.51828254 |
| 4167 | | -0.98630709 0.16491918 0.00000606 305.94862304 |
| 4168 | | -0.00001902 -0.00015049 0.99999999 7.27787332 |
| 4169 | | Axis -0.00007936 0.00008648 -0.99999999 |
| 4170 | | Axis point 169.91764035 165.68249919 0.00000000 |
| 4171 | | Rotation angle (degrees) 80.50746096 |
| 4172 | | Shift along axis -7.24970720 |
| 4173 | | |
| 4174 | | |
| 4175 | | > fitmap #3 inMap #1 |
| 4176 | | |
| 4177 | | Fit map N55H_CBX_P52_J575_011_volume_map.mrc in map |
| 4178 | | WT_PIP2_P68_J150_009_volume_map.mrc using 139334 points |
| 4179 | | correlation = 0.9577, correlation about mean = 0.7565, overlap = 4265 |
| 4180 | | steps = 28, shift = 0.0195, angle = 0.0144 degrees |
| 4181 | | |
| 4182 | | Position of N55H_CBX_P52_J575_011_volume_map.mrc (#3) relative to |
| 4183 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4184 | | Matrix rotation and translation |
| 4185 | | 0.16495211 0.98630157 -0.00009786 -21.50191728 |
| 4186 | | -0.98630158 0.16495211 0.00001929 305.94399383 |
| 4187 | | 0.00003517 0.00009334 1.00000000 7.22823081 |
| 4188 | | Axis 0.00003754 -0.00006744 -1.00000000 |
| 4189 | | Axis point 169.92897121 165.66989108 0.00000000 |
| 4190 | | Rotation angle (degrees) 80.50554765 |
| 4191 | | Shift along axis -7.24967081 |
| 4192 | | |
| 4193 | | |
| 4194 | | > show #!4 models |
| 4195 | | |
| 4196 | | > hide #!3 models |
| 4197 | | |
| 4198 | | > fitmap #4 inMap #1 |
| 4199 | | |
| 4200 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 4201 | | WT_PIP2_P68_J150_009_volume_map.mrc using 12433 points |
| 4202 | | correlation = 0.9371, correlation about mean = 0.6672, overlap = 951.8 |
| 4203 | | steps = 40, shift = 0.0283, angle = 0.114 degrees |
| 4204 | | |
| 4205 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 4206 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4207 | | Matrix rotation and translation |
| 4208 | | 0.16282305 0.98665528 0.00016666 -21.23307101 |
| 4209 | | -0.98665529 0.16282305 0.00005543 306.34837222 |
| 4210 | | 0.00002755 -0.00017346 0.99999999 7.23320926 |
| 4211 | | Axis -0.00011599 0.00007050 -0.99999999 |
| 4212 | | Axis point 169.90685351 165.68705673 0.00000000 |
| 4213 | | Rotation angle (degrees) 80.62920615 |
| 4214 | | Shift along axis -7.20914960 |
| 4215 | | |
| 4216 | | |
| 4217 | | > fitmap #4 inMap #1 |
| 4218 | | |
| 4219 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 4220 | | WT_PIP2_P68_J150_009_volume_map.mrc using 12433 points |
| 4221 | | correlation = 0.9371, correlation about mean = 0.6672, overlap = 951.8 |
| 4222 | | steps = 40, shift = 0.00272, angle = 0.00921 degrees |
| 4223 | | |
| 4224 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 4225 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4226 | | Matrix rotation and translation |
| 4227 | | 0.16289152 0.98664399 0.00002693 -21.22266299 |
| 4228 | | -0.98664399 0.16289153 0.00001690 306.34241284 |
| 4229 | | 0.00001228 -0.00002932 1.00000001 7.21105055 |
| 4230 | | Axis -0.00002342 0.00000743 -1.00000000 |
| 4231 | | Axis point 169.92131143 165.67820214 0.00000000 |
| 4232 | | Rotation angle (degrees) 80.62522917 |
| 4233 | | Shift along axis -7.20827818 |
| 4234 | | |
| 4235 | | |
| 4236 | | > show #!5 models |
| 4237 | | |
| 4238 | | > hide #!4 models |
| 4239 | | |
| 4240 | | > fitmap #5 inMap #1 |
| 4241 | | |
| 4242 | | Fit map N55H_CBX_P52_J650_003_volume_map.mrc in map |
| 4243 | | WT_PIP2_P68_J150_009_volume_map.mrc using 116859 points |
| 4244 | | correlation = 0.8744, correlation about mean = 0.4317, overlap = 2545 |
| 4245 | | steps = 48, shift = 0.15, angle = 0.0923 degrees |
| 4246 | | |
| 4247 | | Position of N55H_CBX_P52_J650_003_volume_map.mrc (#5) relative to |
| 4248 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4249 | | Matrix rotation and translation |
| 4250 | | 0.71988999 0.69408819 0.00000726 -65.12809921 |
| 4251 | | -0.69408818 0.71988999 0.00006294 165.32008265 |
| 4252 | | 0.00003846 -0.00005034 1.00000000 8.55622016 |
| 4253 | | Axis -0.00008161 -0.00002248 -1.00000000 |
| 4254 | | Axis point 172.25973786 163.35168559 0.00000000 |
| 4255 | | Rotation angle (degrees) 43.95460158 |
| 4256 | | Shift along axis -8.55462179 |
| 4257 | | |
| 4258 | | |
| 4259 | | > fitmap #5 inMap #1 |
| 4260 | | |
| 4261 | | Fit map N55H_CBX_P52_J650_003_volume_map.mrc in map |
| 4262 | | WT_PIP2_P68_J150_009_volume_map.mrc using 116859 points |
| 4263 | | correlation = 0.8744, correlation about mean = 0.4317, overlap = 2545 |
| 4264 | | steps = 48, shift = 0.00743, angle = 0.00213 degrees |
| 4265 | | |
| 4266 | | Position of N55H_CBX_P52_J650_003_volume_map.mrc (#5) relative to |
| 4267 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4268 | | Matrix rotation and translation |
| 4269 | | 0.71988501 0.69409335 -0.00000052 -65.12459227 |
| 4270 | | -0.69409335 0.71988501 0.00002726 165.32038076 |
| 4271 | | 0.00001929 -0.00001926 1.00000001 8.55537407 |
| 4272 | | Axis -0.00003351 -0.00001427 -1.00000000 |
| 4273 | | Axis point 172.26003558 163.34618080 0.00000000 |
| 4274 | | Rotation angle (degrees) 43.95501268 |
| 4275 | | Shift along axis -8.55555054 |
| 4276 | | |
| 4277 | | |
| 4278 | | > fitmap #5 inMap #1 |
| 4279 | | |
| 4280 | | Fit map N55H_CBX_P52_J650_003_volume_map.mrc in map |
| 4281 | | WT_PIP2_P68_J150_009_volume_map.mrc using 116859 points |
| 4282 | | correlation = 0.8744, correlation about mean = 0.4317, overlap = 2545 |
| 4283 | | steps = 48, shift = 0.00326, angle = 0.00104 degrees |
| 4284 | | |
| 4285 | | Position of N55H_CBX_P52_J650_003_volume_map.mrc (#5) relative to |
| 4286 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4287 | | Matrix rotation and translation |
| 4288 | | 0.71988836 0.69408988 -0.00000766 -65.12643914 |
| 4289 | | -0.69408988 0.71988836 0.00004326 165.31803823 |
| 4290 | | 0.00003554 -0.00002582 1.00000001 8.55355064 |
| 4291 | | Axis -0.00004976 -0.00003112 -1.00000000 |
| 4292 | | Axis point 172.25738485 163.34795855 0.00000000 |
| 4293 | | Rotation angle (degrees) 43.95473640 |
| 4294 | | Shift along axis -8.55545505 |
| 4295 | | |
| 4296 | | |
| 4297 | | > show #!6 models |
| 4298 | | |
| 4299 | | > hide #!5 models |
| 4300 | | |
| 4301 | | > fitmap #6 inMap #1 |
| 4302 | | |
| 4303 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 4304 | | WT_PIP2_P68_J150_009_volume_map.mrc using 82839 points |
| 4305 | | correlation = 0.88, correlation about mean = 0.3985, overlap = 3044 |
| 4306 | | steps = 52, shift = 0.114, angle = 0.28 degrees |
| 4307 | | |
| 4308 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 4309 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4310 | | Matrix rotation and translation |
| 4311 | | 0.71770198 0.69635040 0.00000560 -65.13465901 |
| 4312 | | -0.69635040 0.71770198 0.00002120 166.04700402 |
| 4313 | | 0.00001074 -0.00001911 1.00000001 8.27526673 |
| 4314 | | Axis -0.00002894 -0.00000369 -1.00000000 |
| 4315 | | Axis point 172.22830898 163.35828983 0.00000000 |
| 4316 | | Rotation angle (degrees) 44.13492420 |
| 4317 | | Shift along axis -8.27399520 |
| 4318 | | |
| 4319 | | |
| 4320 | | > fitmap #6 inMap #1 |
| 4321 | | |
| 4322 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 4323 | | WT_PIP2_P68_J150_009_volume_map.mrc using 82839 points |
| 4324 | | correlation = 0.88, correlation about mean = 0.3986, overlap = 3044 |
| 4325 | | steps = 40, shift = 0.00294, angle = 0.00988 degrees |
| 4326 | | |
| 4327 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 4328 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4329 | | Matrix rotation and translation |
| 4330 | | 0.71758783 0.69646803 -0.00000267 -65.13310955 |
| 4331 | | -0.69646803 0.71758783 -0.00003169 166.09096717 |
| 4332 | | -0.00002016 0.00002460 1.00000001 8.27286225 |
| 4333 | | Axis 0.00004041 0.00001256 -1.00000000 |
| 4334 | | Axis point 172.23554913 163.35881439 0.00000000 |
| 4335 | | Rotation angle (degrees) 44.14431575 |
| 4336 | | Shift along axis -8.27340909 |
| 4337 | | |
| 4338 | | |
| 4339 | | > fitmap #6 inMap #1 |
| 4340 | | |
| 4341 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 4342 | | WT_PIP2_P68_J150_009_volume_map.mrc using 82839 points |
| 4343 | | correlation = 0.88, correlation about mean = 0.3985, overlap = 3044 |
| 4344 | | steps = 48, shift = 0.0171, angle = 0.00665 degrees |
| 4345 | | |
| 4346 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 4347 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4348 | | Matrix rotation and translation |
| 4349 | | 0.71766792 0.69638550 -0.00000630 -65.13144470 |
| 4350 | | -0.69638550 0.71766792 -0.00004753 166.08357574 |
| 4351 | | -0.00002858 0.00003851 1.00000001 8.27233148 |
| 4352 | | Axis 0.00006178 0.00001600 -1.00000000 |
| 4353 | | Axis point 172.26121192 163.36612522 0.00000000 |
| 4354 | | Rotation angle (degrees) 44.13772657 |
| 4355 | | Shift along axis -8.27369831 |
| 4356 | | |
| 4357 | | |
| 4358 | | > fitmap #6 inMap #1 |
| 4359 | | |
| 4360 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 4361 | | WT_PIP2_P68_J150_009_volume_map.mrc using 82839 points |
| 4362 | | correlation = 0.88, correlation about mean = 0.3985, overlap = 3044 |
| 4363 | | steps = 48, shift = 0.0152, angle = 0.00794 degrees |
| 4364 | | |
| 4365 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 4366 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4367 | | Matrix rotation and translation |
| 4368 | | 0.71766499 0.69638852 0.00001217 -65.13511717 |
| 4369 | | -0.69638851 0.71766499 0.00008974 166.04786548 |
| 4370 | | 0.00005376 -0.00007287 1.00000000 8.27704554 |
| 4371 | | Axis -0.00011675 -0.00002986 -0.99999999 |
| 4372 | | Axis point 172.21289400 163.35394701 0.00000000 |
| 4373 | | Rotation angle (degrees) 44.13796732 |
| 4374 | | Shift along axis -8.27439850 |
| 4375 | | |
| 4376 | | |
| 4377 | | > fitmap #6 inMap #1 |
| 4378 | | |
| 4379 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 4380 | | WT_PIP2_P68_J150_009_volume_map.mrc using 82839 points |
| 4381 | | correlation = 0.88, correlation about mean = 0.3985, overlap = 3044 |
| 4382 | | steps = 48, shift = 0.00192, angle = 0.00958 degrees |
| 4383 | | |
| 4384 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 4385 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4386 | | Matrix rotation and translation |
| 4387 | | 0.71771821 0.69633367 -0.00001066 -65.13182834 |
| 4388 | | -0.69633367 0.71771821 -0.00005727 166.05114458 |
| 4389 | | -0.00003223 0.00004853 1.00000000 8.27117106 |
| 4390 | | Axis 0.00007597 0.00001549 -1.00000000 |
| 4391 | | Axis point 172.24231644 163.35856663 0.00000000 |
| 4392 | | Rotation angle (degrees) 44.13358878 |
| 4393 | | Shift along axis -8.27354713 |
| 4394 | | |
| 4395 | | |
| 4396 | | > fitmap #6 inMap #1 |
| 4397 | | |
| 4398 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 4399 | | WT_PIP2_P68_J150_009_volume_map.mrc using 82839 points |
| 4400 | | correlation = 0.88, correlation about mean = 0.3986, overlap = 3044 |
| 4401 | | steps = 44, shift = 0.00219, angle = 0.0108 degrees |
| 4402 | | |
| 4403 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 4404 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4405 | | Matrix rotation and translation |
| 4406 | | 0.71758843 0.69646741 -0.00000847 -65.13389340 |
| 4407 | | -0.69646741 0.71758843 -0.00003032 166.08879279 |
| 4408 | | -0.00001504 0.00002767 1.00000001 8.27139183 |
| 4409 | | Axis 0.00004163 0.00000471 -1.00000000 |
| 4410 | | Axis point 172.23265647 163.35874905 0.00000000 |
| 4411 | | Rotation angle (degrees) 44.14426599 |
| 4412 | | Shift along axis -8.27332044 |
| 4413 | | |
| 4414 | | |
| 4415 | | > fitmap #6 inMap #1 |
| 4416 | | |
| 4417 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 4418 | | WT_PIP2_P68_J150_009_volume_map.mrc using 82839 points |
| 4419 | | correlation = 0.88, correlation about mean = 0.3985, overlap = 3044 |
| 4420 | | steps = 48, shift = 0.0204, angle = 0.00665 degrees |
| 4421 | | |
| 4422 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 4423 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4424 | | Matrix rotation and translation |
| 4425 | | 0.71766909 0.69638430 -0.00000740 -65.12906304 |
| 4426 | | -0.69638430 0.71766909 -0.00002289 166.08033313 |
| 4427 | | -0.00001063 0.00002159 1.00000001 8.27223681 |
| 4428 | | Axis 0.00003193 0.00000232 -1.00000000 |
| 4429 | | Axis point 172.25863420 163.36200812 0.00000000 |
| 4430 | | Rotation angle (degrees) 44.13763038 |
| 4431 | | Shift along axis -8.27393186 |
| 4432 | | |
| 4433 | | |
| 4434 | | > hide #!6 models |
| 4435 | | |
| 4436 | | > show #!7 models |
| 4437 | | |
| 4438 | | > fitmap #7 inMap #1 |
| 4439 | | |
| 4440 | | Fit map MBCD_P41_J50_013_volume_map.mrc in map |
| 4441 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167626 points |
| 4442 | | correlation = 0.9767, correlation about mean = 0.8828, overlap = 3340 |
| 4443 | | steps = 28, shift = 0.00527, angle = 0.0187 degrees |
| 4444 | | |
| 4445 | | Position of MBCD_P41_J50_013_volume_map.mrc (#7) relative to |
| 4446 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4447 | | Matrix rotation and translation |
| 4448 | | 0.32648733 0.94520158 0.00001033 31.56422650 |
| 4449 | | -0.94520158 0.32648733 0.00000032 236.75791677 |
| 4450 | | -0.00000307 -0.00000986 1.00000001 71.17442525 |
| 4451 | | Axis -0.00000539 0.00000709 -1.00000000 |
| 4452 | | Axis point 181.91423293 96.23100481 0.00000000 |
| 4453 | | Rotation angle (degrees) 70.94429120 |
| 4454 | | Shift along axis -71.17291778 |
| 4455 | | |
| 4456 | | |
| 4457 | | > fitmap #7 inMap #1 |
| 4458 | | |
| 4459 | | Fit map MBCD_P41_J50_013_volume_map.mrc in map |
| 4460 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167626 points |
| 4461 | | correlation = 0.9767, correlation about mean = 0.8826, overlap = 3334 |
| 4462 | | steps = 28, shift = 0.0198, angle = 0.00294 degrees |
| 4463 | | |
| 4464 | | Position of MBCD_P41_J50_013_volume_map.mrc (#7) relative to |
| 4465 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4466 | | Matrix rotation and translation |
| 4467 | | 0.32644020 0.94521786 0.00001983 31.56764800 |
| 4468 | | -0.94521786 0.32644020 -0.00000755 236.76495497 |
| 4469 | | -0.00001361 -0.00001627 1.00000001 71.15653659 |
| 4470 | | Axis -0.00000461 0.00001769 -1.00000000 |
| 4471 | | Axis point 181.91267583 96.23362999 0.00000000 |
| 4472 | | Rotation angle (degrees) 70.94714789 |
| 4473 | | Shift along axis -71.15249435 |
| 4474 | | |
| 4475 | | |
| 4476 | | > fitmap #7 inMap #1 |
| 4477 | | |
| 4478 | | Fit map MBCD_P41_J50_013_volume_map.mrc in map |
| 4479 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167626 points |
| 4480 | | correlation = 0.9767, correlation about mean = 0.8826, overlap = 3333 |
| 4481 | | steps = 28, shift = 0.00154, angle = 0.0145 degrees |
| 4482 | | |
| 4483 | | Position of MBCD_P41_J50_013_volume_map.mrc (#7) relative to |
| 4484 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4485 | | Matrix rotation and translation |
| 4486 | | 0.32667814 0.94513565 -0.00000190 31.55230431 |
| 4487 | | -0.94513565 0.32667815 0.00000106 236.72981241 |
| 4488 | | 0.00000162 0.00000146 1.00000001 71.15159919 |
| 4489 | | Axis 0.00000021 -0.00000186 -1.00000000 |
| 4490 | | Axis point 181.92378863 96.21999083 0.00000000 |
| 4491 | | Rotation angle (degrees) 70.93272392 |
| 4492 | | Shift along axis -71.15203364 |
| 4493 | | |
| 4494 | | |
| 4495 | | > fitmap #7 inMap #1 |
| 4496 | | |
| 4497 | | Fit map MBCD_P41_J50_013_volume_map.mrc in map |
| 4498 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167626 points |
| 4499 | | correlation = 0.9767, correlation about mean = 0.8826, overlap = 3333 |
| 4500 | | steps = 24, shift = 0.00242, angle = 0.0161 degrees |
| 4501 | | |
| 4502 | | Position of MBCD_P41_J50_013_volume_map.mrc (#7) relative to |
| 4503 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4504 | | Matrix rotation and translation |
| 4505 | | 0.32641600 0.94522622 0.00002847 31.56904040 |
| 4506 | | -0.94522622 0.32641601 -0.00002670 236.76923540 |
| 4507 | | -0.00003454 -0.00001819 1.00000001 71.15619172 |
| 4508 | | Axis 0.00000450 0.00003333 -1.00000000 |
| 4509 | | Axis point 181.91298101 96.23549463 0.00000000 |
| 4510 | | Rotation angle (degrees) 70.94861472 |
| 4511 | | Shift along axis -71.14815814 |
| 4512 | | |
| 4513 | | |
| 4514 | | > fitmap #7 inMap #1 |
| 4515 | | |
| 4516 | | Fit map MBCD_P41_J50_013_volume_map.mrc in map |
| 4517 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167626 points |
| 4518 | | correlation = 0.9767, correlation about mean = 0.8826, overlap = 3332 |
| 4519 | | steps = 28, shift = 0.00289, angle = 0.0104 degrees |
| 4520 | | |
| 4521 | | Position of MBCD_P41_J50_013_volume_map.mrc (#7) relative to |
| 4522 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4523 | | Matrix rotation and translation |
| 4524 | | 0.32658305 0.94516851 0.00000036 31.55896388 |
| 4525 | | -0.94516851 0.32658305 -0.00000033 236.74379018 |
| 4526 | | -0.00000043 -0.00000023 1.00000001 71.14830149 |
| 4527 | | Axis 0.00000005 0.00000042 -1.00000000 |
| 4528 | | Axis point 181.91935044 96.22475271 0.00000000 |
| 4529 | | Rotation angle (degrees) 70.93848851 |
| 4530 | | Shift along axis -71.14820052 |
| 4531 | | |
| 4532 | | |
| 4533 | | > fitmap #7 inMap #1 |
| 4534 | | |
| 4535 | | Fit map MBCD_P41_J50_013_volume_map.mrc in map |
| 4536 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167626 points |
| 4537 | | correlation = 0.9767, correlation about mean = 0.8826, overlap = 3332 |
| 4538 | | steps = 24, shift = 0.00369, angle = 0.00704 degrees |
| 4539 | | |
| 4540 | | Position of MBCD_P41_J50_013_volume_map.mrc (#7) relative to |
| 4541 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4542 | | Matrix rotation and translation |
| 4543 | | 0.32646836 0.94520813 -0.00000900 31.56552567 |
| 4544 | | -0.94520813 0.32646836 -0.00001683 236.75945548 |
| 4545 | | -0.00001298 0.00001400 1.00000001 71.14833813 |
| 4546 | | Axis 0.00001631 0.00000211 -1.00000000 |
| 4547 | | Axis point 181.91295869 96.23007220 0.00000000 |
| 4548 | | Rotation angle (degrees) 70.94544087 |
| 4549 | | Shift along axis -71.14732480 |
| 4550 | | |
| 4551 | | |
| 4552 | | > show #!8 models |
| 4553 | | |
| 4554 | | > hide #!7 models |
| 4555 | | |
| 4556 | | > fitmap #8 inMap #1 |
| 4557 | | |
| 4558 | | Fit map MBCD_P41_J50_013_volume_map_sharp.mrc in map |
| 4559 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167414 points |
| 4560 | | correlation = 0.9352, correlation about mean = 0.7931, overlap = 8319 |
| 4561 | | steps = 28, shift = 0.0261, angle = 0.0032 degrees |
| 4562 | | |
| 4563 | | Position of MBCD_P41_J50_013_volume_map_sharp.mrc (#8) relative to |
| 4564 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4565 | | Matrix rotation and translation |
| 4566 | | 0.32677736 0.94510135 0.00000555 31.54471428 |
| 4567 | | -0.94510135 0.32677736 -0.00000202 236.71542500 |
| 4568 | | -0.00000373 -0.00000458 1.00000001 71.14255560 |
| 4569 | | Axis -0.00000136 0.00000491 -1.00000000 |
| 4570 | | Axis point 181.92863236 96.21598414 0.00000000 |
| 4571 | | Rotation angle (degrees) 70.92670931 |
| 4572 | | Shift along axis -71.14143624 |
| 4573 | | |
| 4574 | | |
| 4575 | | > fitmap #8 inMap #1 |
| 4576 | | |
| 4577 | | Fit map MBCD_P41_J50_013_volume_map_sharp.mrc in map |
| 4578 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167414 points |
| 4579 | | correlation = 0.9352, correlation about mean = 0.7931, overlap = 8320 |
| 4580 | | steps = 28, shift = 0.00484, angle = 0.00355 degrees |
| 4581 | | |
| 4582 | | Position of MBCD_P41_J50_013_volume_map_sharp.mrc (#8) relative to |
| 4583 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4584 | | Matrix rotation and translation |
| 4585 | | 0.32680534 0.94509168 0.00003413 31.54151840 |
| 4586 | | -0.94509168 0.32680534 0.00004432 236.71127882 |
| 4587 | | 0.00003073 -0.00004673 1.00000000 71.14391021 |
| 4588 | | Axis -0.00004817 0.00000179 -1.00000000 |
| 4589 | | Axis point 181.92750787 96.21768794 0.00000000 |
| 4590 | | Rotation angle (degrees) 70.92501320 |
| 4591 | | Shift along axis -71.14500470 |
| 4592 | | |
| 4593 | | |
| 4594 | | > fitmap #8 inMap #1 |
| 4595 | | |
| 4596 | | Fit map MBCD_P41_J50_013_volume_map_sharp.mrc in map |
| 4597 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167414 points |
| 4598 | | correlation = 0.9352, correlation about mean = 0.7931, overlap = 8320 |
| 4599 | | steps = 24, shift = 0.00245, angle = 0.000842 degrees |
| 4600 | | |
| 4601 | | Position of MBCD_P41_J50_013_volume_map_sharp.mrc (#8) relative to |
| 4602 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4603 | | Matrix rotation and translation |
| 4604 | | 0.32679412 0.94509556 0.00003125 31.54467707 |
| 4605 | | -0.94509556 0.32679412 0.00003614 236.71242835 |
| 4606 | | 0.00002394 -0.00004134 1.00000001 71.14392048 |
| 4607 | | Axis -0.00004099 0.00000386 -1.00000000 |
| 4608 | | Axis point 181.92816603 96.21603847 0.00000000 |
| 4609 | | Rotation angle (degrees) 70.92569330 |
| 4610 | | Shift along axis -71.14429871 |
| 4611 | | |
| 4612 | | |
| 4613 | | > fitmap #8 inMap #1 |
| 4614 | | |
| 4615 | | Fit map MBCD_P41_J50_013_volume_map_sharp.mrc in map |
| 4616 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167414 points |
| 4617 | | correlation = 0.9352, correlation about mean = 0.7931, overlap = 8319 |
| 4618 | | steps = 24, shift = 0.00309, angle = 0.00163 degrees |
| 4619 | | |
| 4620 | | Position of MBCD_P41_J50_013_volume_map_sharp.mrc (#8) relative to |
| 4621 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4622 | | Matrix rotation and translation |
| 4623 | | 0.32679249 0.94509612 0.00004485 31.54479877 |
| 4624 | | -0.94509612 0.32679249 0.00001118 236.71238877 |
| 4625 | | -0.00000409 -0.00004603 1.00000001 71.14707166 |
| 4626 | | Axis -0.00003027 0.00002589 -1.00000000 |
| 4627 | | Axis point 181.92937705 96.21622192 0.00000000 |
| 4628 | | Rotation angle (degrees) 70.92579216 |
| 4629 | | Shift along axis -71.14189726 |
| 4630 | | |
| 4631 | | |
| 4632 | | > hide #!8 models |
| 4633 | | |
| 4634 | | > show #!9 models |
| 4635 | | |
| 4636 | | > volume #9 level 0.4302 |
| 4637 | | |
| 4638 | | > ui mousemode right "translate selected models" |
| 4639 | | |
| 4640 | | > select add #9 |
| 4641 | | |
| 4642 | | 2 models selected |
| 4643 | | |
| 4644 | | > view matrix models #9,1,0,0,-31.584,0,1,0,-27.038,0,0,1,-47.529 |
| 4645 | | |
| 4646 | | > view matrix models #9,1,0,0,-31.968,0,1,0,-32.32,0,0,1,-47.955 |
| 4647 | | |
| 4648 | | > view matrix models #9,1,0,0,-32.181,0,1,0,-33.826,0,0,1,-41.86 |
| 4649 | | |
| 4650 | | > fitmap #9 inMap #1 |
| 4651 | | |
| 4652 | | Fit map POPE_C6_P58_J139_004_volume_map.mrc in map |
| 4653 | | WT_PIP2_P68_J150_009_volume_map.mrc using 54576 points |
| 4654 | | correlation = 0.8879, correlation about mean = 0.477, overlap = 6261 |
| 4655 | | steps = 72, shift = 1.8, angle = 5.02 degrees |
| 4656 | | |
| 4657 | | Position of POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 4658 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4659 | | Matrix rotation and translation |
| 4660 | | 0.40824369 0.91287298 -0.00010655 -16.39712695 |
| 4661 | | -0.91287299 0.40824369 -0.00002177 240.65586812 |
| 4662 | | 0.00002363 0.00010616 1.00000000 30.17233731 |
| 4663 | | Axis 0.00007007 -0.00007130 -1.00000000 |
| 4664 | | Axis point 177.42474525 132.97274228 0.00000000 |
| 4665 | | Rotation angle (degrees) 65.90544611 |
| 4666 | | Shift along axis -30.19064566 |
| 4667 | | |
| 4668 | | |
| 4669 | | > fitmap #9 inMap #1 |
| 4670 | | |
| 4671 | | Fit map POPE_C6_P58_J139_004_volume_map.mrc in map |
| 4672 | | WT_PIP2_P68_J150_009_volume_map.mrc using 54576 points |
| 4673 | | correlation = 0.8879, correlation about mean = 0.477, overlap = 6261 |
| 4674 | | steps = 40, shift = 0.0107, angle = 0.00365 degrees |
| 4675 | | |
| 4676 | | Position of POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 4677 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4678 | | Matrix rotation and translation |
| 4679 | | 0.40824794 0.91287109 -0.00004335 -16.41297815 |
| 4680 | | -0.91287109 0.40824794 -0.00002746 240.64763680 |
| 4681 | | -0.00000737 0.00005079 1.00000001 30.18383454 |
| 4682 | | Axis 0.00004286 -0.00001970 -1.00000000 |
| 4683 | | Axis point 177.41220752 132.98232956 0.00000000 |
| 4684 | | Rotation angle (degrees) 65.90517947 |
| 4685 | | Shift along axis -30.18927959 |
| 4686 | | |
| 4687 | | |
| 4688 | | > fitmap #9 inMap #1 |
| 4689 | | |
| 4690 | | Fit map POPE_C6_P58_J139_004_volume_map.mrc in map |
| 4691 | | WT_PIP2_P68_J150_009_volume_map.mrc using 54576 points |
| 4692 | | correlation = 0.8879, correlation about mean = 0.477, overlap = 6261 |
| 4693 | | steps = 40, shift = 0.0169, angle = 0.00997 degrees |
| 4694 | | |
| 4695 | | Position of POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 4696 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4697 | | Matrix rotation and translation |
| 4698 | | 0.40837230 0.91281547 0.00004546 -16.42525594 |
| 4699 | | -0.91281547 0.40837230 0.00003457 240.62771733 |
| 4700 | | 0.00001299 -0.00005561 1.00000000 30.19789465 |
| 4701 | | Axis -0.00004940 0.00001779 -1.00000000 |
| 4702 | | Axis point 177.41788563 132.98644552 0.00000000 |
| 4703 | | Rotation angle (degrees) 65.89737404 |
| 4704 | | Shift along axis -30.19280293 |
| 4705 | | |
| 4706 | | |
| 4707 | | > select clear |
| 4708 | | |
| 4709 | | > volume #9 level 0.5816 |
| 4710 | | |
| 4711 | | > hide #!9 models |
| 4712 | | |
| 4713 | | > show #!9 models |
| 4714 | | |
| 4715 | | > hide #!1 models |
| 4716 | | |
| 4717 | | > show #!10 models |
| 4718 | | |
| 4719 | | > hide #!9 models |
| 4720 | | |
| 4721 | | > show #!9 models |
| 4722 | | |
| 4723 | | > select add #10 |
| 4724 | | |
| 4725 | | 2 models selected |
| 4726 | | |
| 4727 | | > view matrix models #10,1,0,0,-20.023,0,1,0,-1.9994,0,0,1,-35.737 |
| 4728 | | |
| 4729 | | > view matrix models #10,1,0,0,-29.305,0,1,0,-27.566,0,0,1,-36.121 |
| 4730 | | |
| 4731 | | > view matrix models #10,1,0,0,-31.04,0,1,0,-30.919,0,0,1,-36.842 |
| 4732 | | |
| 4733 | | > fitmap #10 inMap #1 |
| 4734 | | |
| 4735 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 4736 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167755 points |
| 4737 | | correlation = 0.8519, correlation about mean = 0.6055, overlap = 1.435e+04 |
| 4738 | | steps = 96, shift = 4.4, angle = 4.96 degrees |
| 4739 | | |
| 4740 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 4741 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4742 | | Matrix rotation and translation |
| 4743 | | 0.40724988 0.91331678 -0.00006463 -16.33373300 |
| 4744 | | -0.91331677 0.40724988 0.00012957 240.84693588 |
| 4745 | | 0.00014466 0.00000627 1.00000000 30.29928277 |
| 4746 | | Axis -0.00006750 -0.00011458 -0.99999999 |
| 4747 | | Axis point 177.37941548 133.00691898 0.00000000 |
| 4748 | | Rotation angle (degrees) 65.96780711 |
| 4749 | | Shift along axis -30.32577607 |
| 4750 | | |
| 4751 | | |
| 4752 | | > fitmap #10 inMap #1 |
| 4753 | | |
| 4754 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 4755 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167755 points |
| 4756 | | correlation = 0.8519, correlation about mean = 0.6055, overlap = 1.435e+04 |
| 4757 | | steps = 24, shift = 0.000953, angle = 0.000902 degrees |
| 4758 | | |
| 4759 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 4760 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4761 | | Matrix rotation and translation |
| 4762 | | 0.40724981 0.91331681 -0.00007833 -16.33268604 |
| 4763 | | -0.91331680 0.40724981 0.00012179 240.84781521 |
| 4764 | | 0.00014313 0.00002194 1.00000000 30.29759993 |
| 4765 | | Axis -0.00005466 -0.00012124 -0.99999999 |
| 4766 | | Axis point 177.38064010 133.00615026 0.00000000 |
| 4767 | | Rotation angle (degrees) 65.96781144 |
| 4768 | | Shift along axis -30.32590659 |
| 4769 | | |
| 4770 | | |
| 4771 | | > fitmap #10 inMap #1 |
| 4772 | | |
| 4773 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 4774 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167755 points |
| 4775 | | correlation = 0.8519, correlation about mean = 0.6055, overlap = 1.435e+04 |
| 4776 | | steps = 28, shift = 0.0256, angle = 0.0123 degrees |
| 4777 | | |
| 4778 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 4779 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4780 | | Matrix rotation and translation |
| 4781 | | 0.40724998 0.91331674 0.00004186 -16.33362864 |
| 4782 | | -0.91331673 0.40724999 -0.00005652 240.85258712 |
| 4783 | | -0.00006867 -0.00001521 1.00000000 30.33231112 |
| 4784 | | Axis 0.00002262 0.00006051 -1.00000000 |
| 4785 | | Axis point 177.38930036 133.01021389 0.00000000 |
| 4786 | | Rotation angle (degrees) 65.96780026 |
| 4787 | | Shift along axis -30.31810719 |
| 4788 | | |
| 4789 | | |
| 4790 | | > fitmap #10 inMap #1 |
| 4791 | | |
| 4792 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 4793 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167755 points |
| 4794 | | correlation = 0.8519, correlation about mean = 0.6055, overlap = 1.435e+04 |
| 4795 | | steps = 24, shift = 0.000526, angle = 5.42e-05 degrees |
| 4796 | | |
| 4797 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 4798 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4799 | | Matrix rotation and translation |
| 4800 | | 0.40725023 0.91331663 0.00004113 -16.33323622 |
| 4801 | | -0.91331663 0.40725023 -0.00005707 240.85258075 |
| 4802 | | -0.00006887 -0.00001432 1.00000000 30.33263857 |
| 4803 | | Axis 0.00002340 0.00006022 -1.00000000 |
| 4804 | | Axis point 177.38955117 133.00988947 0.00000000 |
| 4805 | | Rotation angle (degrees) 65.96778497 |
| 4806 | | Shift along axis -30.31851570 |
| 4807 | | |
| 4808 | | |
| 4809 | | > fitmap #10 inMap #1 |
| 4810 | | |
| 4811 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 4812 | | WT_PIP2_P68_J150_009_volume_map.mrc using 167755 points |
| 4813 | | correlation = 0.8519, correlation about mean = 0.6055, overlap = 1.435e+04 |
| 4814 | | steps = 28, shift = 0.0255, angle = 0.0124 degrees |
| 4815 | | |
| 4816 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 4817 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4818 | | Matrix rotation and translation |
| 4819 | | 0.40725004 0.91331671 -0.00010544 -16.33088750 |
| 4820 | | -0.91331670 0.40725005 0.00010111 240.84833378 |
| 4821 | | 0.00013528 0.00005512 1.00000000 30.29372574 |
| 4822 | | Axis -0.00002518 -0.00013178 -0.99999999 |
| 4823 | | Axis point 177.38219105 133.00417905 0.00000000 |
| 4824 | | Rotation angle (degrees) 65.96779684 |
| 4825 | | Shift along axis -30.32505420 |
| 4826 | | |
| 4827 | | |
| 4828 | | > select clear |
| 4829 | | |
| 4830 | | > hide #!10 models |
| 4831 | | |
| 4832 | | > hide #!9 models |
| 4833 | | |
| 4834 | | > show #!9 models |
| 4835 | | |
| 4836 | | > show #!10 models |
| 4837 | | |
| 4838 | | > volume #10 level 0.9296 |
| 4839 | | |
| 4840 | | > hide #!10 models |
| 4841 | | |
| 4842 | | > rename #14 id #13 |
| 4843 | | |
| 4844 | | > rename #15 id #15 |
| 4845 | | |
| 4846 | | > select clear |
| 4847 | | |
| 4848 | | > hide #!9 models |
| 4849 | | |
| 4850 | | > show #!9 models |
| 4851 | | |
| 4852 | | > show #!10 models |
| 4853 | | |
| 4854 | | > hide #!9 models |
| 4855 | | |
| 4856 | | > volume #10 level 0.6164 |
| 4857 | | |
| 4858 | | > hide #!10 models |
| 4859 | | |
| 4860 | | > show #!13 models |
| 4861 | | |
| 4862 | | > volume #13 level 0.1911 |
| 4863 | | |
| 4864 | | > show #!15 models |
| 4865 | | |
| 4866 | | > hide #!13 models |
| 4867 | | |
| 4868 | | > volume #15 level 0.2058 |
| 4869 | | |
| 4870 | | > rename #13 id #40 |
| 4871 | | |
| 4872 | | > rename #15 id 41 |
| 4873 | | |
| 4874 | | > open "C:/Users/OJS/OneDrive - |
| 4875 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/M257_POPE_C6_P38_J358_sharp.mrc" |
| 4876 | | |
| 4877 | | Opened M257_POPE_C6_P38_J358_sharp.mrc as #11, grid size 360,360,360, pixel |
| 4878 | | 0.842, shown at level 0.058, step 2, values float32 |
| 4879 | | |
| 4880 | | > open "C:/Users/OJS/OneDrive - |
| 4881 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/M257_POPE_C2_P38_J250_sharp.mrc" |
| 4882 | | |
| 4883 | | Opened M257_POPE_C2_P38_J250_sharp.mrc as #12, grid size 360,360,360, pixel |
| 4884 | | 0.842, shown at level 0.143, step 2, values float32 |
| 4885 | | |
| 4886 | | > rename #11 id #14 |
| 4887 | | |
| 4888 | | > rename #40 id #13 |
| 4889 | | |
| 4890 | | > color #12 #ffaa00ff models |
| 4891 | | |
| 4892 | | > close #13 |
| 4893 | | |
| 4894 | | > close #41 |
| 4895 | | |
| 4896 | | > open "C:/Users/OJS/OneDrive - |
| 4897 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/M257_POPE_C6_P38_J358.mrc" |
| 4898 | | |
| 4899 | | Opened M257_POPE_C6_P38_J358.mrc as #11, grid size 360,360,360, pixel 0.842, |
| 4900 | | shown at level 0.0553, step 2, values float32 |
| 4901 | | |
| 4902 | | > open "C:/Users/OJS/OneDrive - |
| 4903 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/M257_POPE_C2_P38_J250.mrc" |
| 4904 | | |
| 4905 | | Opened M257_POPE_C2_P38_J250.mrc as #13, grid size 360,360,360, pixel 0.842, |
| 4906 | | shown at level 0.129, step 2, values float32 |
| 4907 | | |
| 4908 | | > rename #13 id #15 |
| 4909 | | |
| 4910 | | > rename #14 id #16 |
| 4911 | | |
| 4912 | | > color #15 #aaff7fff models |
| 4913 | | |
| 4914 | | > color #16 #aaff7fff models |
| 4915 | | |
| 4916 | | > volume #15 level 0.1735 |
| 4917 | | |
| 4918 | | > volume #16 level 0.1266 |
| 4919 | | |
| 4920 | | > fitmap #15 inMap #1 |
| 4921 | | |
| 4922 | | Fit map M257_POPE_C2_P38_J250.mrc in map WT_PIP2_P68_J150_009_volume_map.mrc |
| 4923 | | using 26700 points |
| 4924 | | correlation = 0.6703, correlation about mean = 0.1306, overlap = 466.9 |
| 4925 | | steps = 400, shift = 58.1, angle = 7.22 degrees |
| 4926 | | |
| 4927 | | Position of M257_POPE_C2_P38_J250.mrc (#15) relative to |
| 4928 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4929 | | Matrix rotation and translation |
| 4930 | | 0.28988954 0.95011652 -0.11507676 19.15503782 |
| 4931 | | -0.95455232 0.29573099 0.03705497 259.22658207 |
| 4932 | | 0.06923830 0.09910494 0.99266524 5.03668678 |
| 4933 | | Axis 0.03240932 -0.09626959 -0.99482752 |
| 4934 | | Axis point 183.20058378 115.76111380 0.00000000 |
| 4935 | | Rotation angle (degrees) 73.19335142 |
| 4936 | | Shift along axis -29.34546976 |
| 4937 | | |
| 4938 | | |
| 4939 | | > show #!1 models |
| 4940 | | |
| 4941 | | > hide #!12 models |
| 4942 | | |
| 4943 | | > hide #!11 models |
| 4944 | | |
| 4945 | | > hide #!16 models |
| 4946 | | |
| 4947 | | > ui mousemode right "translate selected models" |
| 4948 | | |
| 4949 | | > select add #15 |
| 4950 | | |
| 4951 | | 2 models selected |
| 4952 | | |
| 4953 | | > view matrix models |
| 4954 | | > #15,0.99688,0.030996,-0.072617,-33.381,-0.037962,0.9946,-0.096602,-23.347,0.06923,0.099057,0.99267,-66.479 |
| 4955 | | |
| 4956 | | > fitmap #15 inMap #1 |
| 4957 | | |
| 4958 | | Fit map M257_POPE_C2_P38_J250.mrc in map WT_PIP2_P68_J150_009_volume_map.mrc |
| 4959 | | using 26700 points |
| 4960 | | correlation = 0.8496, correlation about mean = 0.4508, overlap = 891.5 |
| 4961 | | steps = 212, shift = 5.77, angle = 19.9 degrees |
| 4962 | | |
| 4963 | | Position of M257_POPE_C2_P38_J250.mrc (#15) relative to |
| 4964 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 4965 | | Matrix rotation and translation |
| 4966 | | -0.02787624 0.99961136 0.00023720 22.38512496 |
| 4967 | | -0.99961137 -0.02787620 -0.00017883 325.25294858 |
| 4968 | | -0.00017216 -0.00024209 0.99999996 24.44944515 |
| 4969 | | Axis -0.00003164 0.00020476 -0.99999998 |
| 4970 | | Axis point 169.34912853 151.74456635 0.00000000 |
| 4971 | | Rotation angle (degrees) 91.59739769 |
| 4972 | | Shift along axis -24.38355454 |
| 4973 | | |
| 4974 | | |
| 4975 | | > show #!16 models |
| 4976 | | |
| 4977 | | > hide #!15 models |
| 4978 | | |
| 4979 | | > show #!15 models |
| 4980 | | |
| 4981 | | > select add #16 |
| 4982 | | |
| 4983 | | 4 models selected |
| 4984 | | |
| 4985 | | > select subtract #15 |
| 4986 | | |
| 4987 | | 2 models selected |
| 4988 | | |
| 4989 | | > view matrix models #16,1,0,0,-61.472,0,1,0,17.627,0,0,1,3.8232 |
| 4990 | | |
| 4991 | | > view matrix models #16,1,0,0,-43.151,0,1,0,9.9238,0,0,1,-45.465 |
| 4992 | | |
| 4993 | | > ui mousemode right "rotate selected models" |
| 4994 | | |
| 4995 | | > view matrix models |
| 4996 | | > #16,-0.8025,0.5874,0.1047,125.18,0.59457,0.80194,0.05808,-58.854,-0.049848,0.10886,-0.99281,244.74 |
| 4997 | | |
| 4998 | | > view matrix models |
| 4999 | | > #16,-0.89785,-0.40706,-0.16782,331.17,-0.39891,0.91338,-0.081244,95.663,0.18635,-0.0060006,-0.98246,224.8 |
| 5000 | | |
| 5001 | | > view matrix models |
| 5002 | | > #16,-0.86924,-0.47691,0.13032,292.66,-0.4762,0.87849,0.038562,94.67,-0.13287,-0.028538,-0.99072,277.81 |
| 5003 | | |
| 5004 | | > view matrix models |
| 5005 | | > #16,-0.86998,-0.28295,-0.40382,343.57,-0.47983,0.67444,0.56116,47.68,0.11357,0.68196,-0.72252,92.603 |
| 5006 | | |
| 5007 | | > view matrix models |
| 5008 | | > #16,-0.99975,-0.0045195,0.021975,257.14,0.01204,0.7184,0.69553,-53.651,-0.01893,0.69562,-0.71817,109.95 |
| 5009 | | |
| 5010 | | > view matrix models |
| 5011 | | > #16,-0.99712,0.069303,0.030949,244.21,0.065784,0.9925,-0.10303,16.561,-0.037857,-0.10069,-0.9942,274.87 |
| 5012 | | |
| 5013 | | > view matrix models |
| 5014 | | > #16,-0.99286,0.078246,-0.090086,260.38,0.061469,0.98249,0.17589,-23.138,0.10227,0.1691,-0.98028,210.69 |
| 5015 | | |
| 5016 | | > view matrix models |
| 5017 | | > #16,-0.97409,0.11976,-0.19183,266.52,0.073706,0.97007,0.23137,-31.437,0.2138,0.21123,-0.95377,183.43 |
| 5018 | | |
| 5019 | | > ui mousemode right "translate selected models" |
| 5020 | | |
| 5021 | | > view matrix models |
| 5022 | | > #16,-0.97409,0.11976,-0.19183,266.33,0.073706,0.97007,0.23137,-88.807,0.2138,0.21123,-0.95377,197.54 |
| 5023 | | |
| 5024 | | > fitmap #15 inMap #1 |
| 5025 | | |
| 5026 | | Fit map M257_POPE_C2_P38_J250.mrc in map WT_PIP2_P68_J150_009_volume_map.mrc |
| 5027 | | using 26700 points |
| 5028 | | correlation = 0.8496, correlation about mean = 0.4508, overlap = 891.5 |
| 5029 | | steps = 40, shift = 0.0151, angle = 0.0354 degrees |
| 5030 | | |
| 5031 | | Position of M257_POPE_C2_P38_J250.mrc (#15) relative to |
| 5032 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5033 | | Matrix rotation and translation |
| 5034 | | -0.02787659 0.99961133 -0.00031896 22.45324025 |
| 5035 | | -0.99961137 -0.02787656 0.00009055 325.22044868 |
| 5036 | | 0.00008162 0.00032137 0.99999995 24.32566065 |
| 5037 | | Axis 0.00011546 -0.00020037 -0.99999997 |
| 5038 | | Axis point 169.36431373 151.68851472 0.00000000 |
| 5039 | | Rotation angle (degrees) 91.59741848 |
| 5040 | | Shift along axis -24.38823136 |
| 5041 | | |
| 5042 | | |
| 5043 | | > volume #16 level 0.2367 |
| 5044 | | |
| 5045 | | > volume #15 level 0.2434 |
| 5046 | | |
| 5047 | | > select clear |
| 5048 | | |
| 5049 | | > color #16 #ffaa00ff models |
| 5050 | | |
| 5051 | | > color #12 #55ff7fff models |
| 5052 | | |
| 5053 | | > color #12 #aaff7fff models |
| 5054 | | |
| 5055 | | > hide #!15 models |
| 5056 | | |
| 5057 | | > select add #16 |
| 5058 | | |
| 5059 | | 2 models selected |
| 5060 | | |
| 5061 | | > select subtract #16 |
| 5062 | | |
| 5063 | | Nothing selected |
| 5064 | | |
| 5065 | | > rename #11 id #13 |
| 5066 | | |
| 5067 | | > rename #16 id #14 |
| 5068 | | |
| 5069 | | > color #13 #ffaa00ff models |
| 5070 | | |
| 5071 | | > rename #12 id #16 |
| 5072 | | |
| 5073 | | > hide #!14 models |
| 5074 | | |
| 5075 | | > show #!13 models |
| 5076 | | |
| 5077 | | > volume #13 level 0.1701 |
| 5078 | | |
| 5079 | | > ui mousemode right "translate selected models" |
| 5080 | | |
| 5081 | | > ui mousemode right "rotate selected models" |
| 5082 | | |
| 5083 | | > select add #13 |
| 5084 | | |
| 5085 | | 2 models selected |
| 5086 | | |
| 5087 | | > view matrix models |
| 5088 | | > #13,0.75398,-0.65649,0.023084,133.21,-0.62269,-0.70308,0.34341,300.32,-0.20922,-0.2733,-0.9389,366.51 |
| 5089 | | |
| 5090 | | > ui mousemode right "translate selected models" |
| 5091 | | |
| 5092 | | > view matrix models |
| 5093 | | > #13,0.75398,-0.65649,0.023084,109.17,-0.62269,-0.70308,0.34341,286.81,-0.20922,-0.2733,-0.9389,300.44 |
| 5094 | | |
| 5095 | | > view matrix models |
| 5096 | | > #13,0.75398,-0.65649,0.023084,90.458,-0.62269,-0.70308,0.34341,250.69,-0.20922,-0.2733,-0.9389,297.65 |
| 5097 | | |
| 5098 | | > ui mousemode right "rotate selected models" |
| 5099 | | |
| 5100 | | > view matrix models |
| 5101 | | > #13,0.97303,-0.22936,0.024715,-7.6663,-0.23068,-0.96784,0.10034,268.2,0.00090721,-0.10333,-0.99465,248.52 |
| 5102 | | |
| 5103 | | > ui mousemode right "translate selected models" |
| 5104 | | |
| 5105 | | > view matrix models |
| 5106 | | > #13,0.97303,-0.22936,0.024715,-5.5313,-0.23068,-0.96784,0.10034,269.59,0.00090721,-0.10333,-0.99465,265.75 |
| 5107 | | |
| 5108 | | > view matrix models |
| 5109 | | > #13,0.97303,-0.22936,0.024715,-8.676,-0.23068,-0.96784,0.10034,272.95,0.00090721,-0.10333,-0.99465,266.23 |
| 5110 | | |
| 5111 | | > fitmap #13 inMap #1 |
| 5112 | | |
| 5113 | | Fit map M257_POPE_C6_P38_J358.mrc in map WT_PIP2_P68_J150_009_volume_map.mrc |
| 5114 | | using 20237 points |
| 5115 | | correlation = 0.8865, correlation about mean = 0.5322, overlap = 771.4 |
| 5116 | | steps = 84, shift = 2.03, angle = 8.19 degrees |
| 5117 | | |
| 5118 | | Position of M257_POPE_C6_P38_J358.mrc (#13) relative to |
| 5119 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5120 | | Matrix rotation and translation |
| 5121 | | 0.19754912 -0.98029299 -0.00001922 288.16928350 |
| 5122 | | -0.98029299 -0.19754913 0.00010596 347.98513192 |
| 5123 | | -0.00010768 -0.00000210 -1.00000000 323.42067267 |
| 5124 | | Axis -0.77380399 0.63342512 0.00003299 |
| 5125 | | Axis point 0.00000000 291.94553300 161.70859199 |
| 5126 | | Rotation angle (degrees) 179.99599929 |
| 5127 | | Shift along axis -2.55335028 |
| 5128 | | |
| 5129 | | |
| 5130 | | > fitmap #13 inMap #1 |
| 5131 | | |
| 5132 | | Fit map M257_POPE_C6_P38_J358.mrc in map WT_PIP2_P68_J150_009_volume_map.mrc |
| 5133 | | using 20237 points |
| 5134 | | correlation = 0.8865, correlation about mean = 0.5322, overlap = 771.4 |
| 5135 | | steps = 28, shift = 0.015, angle = 0.0136 degrees |
| 5136 | | |
| 5137 | | Position of M257_POPE_C6_P38_J358.mrc (#13) relative to |
| 5138 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5139 | | Matrix rotation and translation |
| 5140 | | 0.19751744 -0.98029937 0.00008365 288.14830986 |
| 5141 | | -0.98029937 -0.19751746 -0.00010525 348.02394264 |
| 5142 | | 0.00011970 -0.00006122 -0.99999999 323.39543721 |
| 5143 | | Axis 0.77379809 -0.63343233 0.00004606 |
| 5144 | | Axis point 0.00000000 291.94832787 161.69235608 |
| 5145 | | Rotation angle (degrees) 179.99836980 |
| 5146 | | Shift along axis 2.53389110 |
| 5147 | | |
| 5148 | | |
| 5149 | | > select clear |
| 5150 | | |
| 5151 | | > hide #!13 models |
| 5152 | | |
| 5153 | | > show #!14 models |
| 5154 | | |
| 5155 | | > ui mousemode right "translate selected models" |
| 5156 | | |
| 5157 | | > select add #14 |
| 5158 | | |
| 5159 | | 2 models selected |
| 5160 | | |
| 5161 | | > view matrix models |
| 5162 | | > #14,-0.97409,0.11976,-0.19183,273.04,0.073706,0.97007,0.23137,-87.933,0.2138,0.21123,-0.95377,170.1 |
| 5163 | | |
| 5164 | | > ui mousemode right "rotate selected models" |
| 5165 | | |
| 5166 | | > view matrix models |
| 5167 | | > #14,-0.96857,-0.23903,0.068866,286.42,-0.22226,0.9559,0.19197,-34.895,-0.11172,0.17063,-0.97898,229.44 |
| 5168 | | |
| 5169 | | > view matrix models |
| 5170 | | > #14,-0.92822,-0.37102,-0.02739,315.12,-0.36956,0.92803,-0.04677,28.384,0.042771,-0.03329,-0.99853,239.93 |
| 5171 | | |
| 5172 | | > ui mousemode right "translate selected models" |
| 5173 | | |
| 5174 | | > view matrix models |
| 5175 | | > #14,-0.92822,-0.37102,-0.02739,307.68,-0.36956,0.92803,-0.04677,35.167,0.042771,-0.03329,-0.99853,246.88 |
| 5176 | | |
| 5177 | | > ui mousemode right "rotate selected models" |
| 5178 | | |
| 5179 | | > view matrix models |
| 5180 | | > #14,-0.97786,0.10238,-0.1825,267.37,0.10412,0.99456,4.6048e-05,-53.866,0.18152,-0.018958,-0.9832,221.34 |
| 5181 | | |
| 5182 | | > view matrix models |
| 5183 | | > #14,-0.98765,0.15258,-0.035492,238.62,0.15589,0.97962,-0.12668,-39.938,0.01544,-0.13065,-0.99131,264.66 |
| 5184 | | |
| 5185 | | > fitmap #13 inMap #1 |
| 5186 | | |
| 5187 | | Fit map M257_POPE_C6_P38_J358.mrc in map WT_PIP2_P68_J150_009_volume_map.mrc |
| 5188 | | using 20237 points |
| 5189 | | correlation = 0.8865, correlation about mean = 0.5321, overlap = 771.4 |
| 5190 | | steps = 28, shift = 0.0161, angle = 0.016 degrees |
| 5191 | | |
| 5192 | | Position of M257_POPE_C6_P38_J358.mrc (#13) relative to |
| 5193 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5194 | | Matrix rotation and translation |
| 5195 | | 0.19764340 -0.98027398 -0.00010503 288.16975596 |
| 5196 | | -0.98027399 -0.19764340 0.00005489 348.00977141 |
| 5197 | | -0.00007457 0.00009210 -1.00000000 323.40169742 |
| 5198 | | Axis 0.77383935 -0.63338192 -0.00008128 |
| 5199 | | Axis point 0.00000000 291.93480665 161.71869809 |
| 5200 | | Rotation angle (degrees) 179.99862237 |
| 5201 | | Shift along axis 2.54771226 |
| 5202 | | |
| 5203 | | |
| 5204 | | > fitmap #14 inMap #1 |
| 5205 | | |
| 5206 | | Fit map M257_POPE_C6_P38_J358_sharp.mrc in map |
| 5207 | | WT_PIP2_P68_J150_009_volume_map.mrc using 14513 points |
| 5208 | | correlation = 0.9138, correlation about mean = 0.5534, overlap = 924.7 |
| 5209 | | steps = 84, shift = 5.53, angle = 7.65 degrees |
| 5210 | | |
| 5211 | | Position of M257_POPE_C6_P38_J358_sharp.mrc (#14) relative to |
| 5212 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5213 | | Matrix rotation and translation |
| 5214 | | -0.19704167 0.98039513 0.00002225 50.94052243 |
| 5215 | | 0.98039513 0.19704167 0.00005015 -8.75807320 |
| 5216 | | 0.00004479 0.00003170 -1.00000001 323.22621751 |
| 5217 | | Axis -0.63351529 -0.77373017 -0.00006385 |
| 5218 | | Axis point 29.05421019 0.00000000 161.61363379 |
| 5219 | | Rotation angle (degrees) 179.99916532 |
| 5220 | | Shift along axis -25.51585069 |
| 5221 | | |
| 5222 | | |
| 5223 | | > select clear |
| 5224 | | |
| 5225 | | > show #!13 models |
| 5226 | | |
| 5227 | | > hide #!13 models |
| 5228 | | |
| 5229 | | > hide #!14 models |
| 5230 | | |
| 5231 | | > show #!15 models |
| 5232 | | |
| 5233 | | > fitmap #15 inMap #1 |
| 5234 | | |
| 5235 | | Fit map M257_POPE_C2_P38_J250.mrc in map WT_PIP2_P68_J150_009_volume_map.mrc |
| 5236 | | using 12078 points |
| 5237 | | correlation = 0.8441, correlation about mean = 0.3777, overlap = 657.2 |
| 5238 | | steps = 44, shift = 0.021, angle = 0.0332 degrees |
| 5239 | | |
| 5240 | | Position of M257_POPE_C2_P38_J250.mrc (#15) relative to |
| 5241 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5242 | | Matrix rotation and translation |
| 5243 | | -0.02757911 0.99961962 0.00016019 22.35205544 |
| 5244 | | -0.99961963 -0.02757911 -0.00003857 325.19101448 |
| 5245 | | -0.00003414 -0.00016118 0.99999999 24.43275705 |
| 5246 | | Axis -0.00006133 0.00009720 -0.99999999 |
| 5247 | | Axis point 169.34786532 151.72548434 0.00000000 |
| 5248 | | Rotation angle (degrees) 91.58036713 |
| 5249 | | Shift along axis -24.40251912 |
| 5250 | | |
| 5251 | | |
| 5252 | | > fitmap #15 inMap #1 |
| 5253 | | |
| 5254 | | Fit map M257_POPE_C2_P38_J250.mrc in map WT_PIP2_P68_J150_009_volume_map.mrc |
| 5255 | | using 12078 points |
| 5256 | | correlation = 0.8441, correlation about mean = 0.3777, overlap = 657.2 |
| 5257 | | steps = 48, shift = 0.00239, angle = 0.0155 degrees |
| 5258 | | |
| 5259 | | Position of M257_POPE_C2_P38_J250.mrc (#15) relative to |
| 5260 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5261 | | Matrix rotation and translation |
| 5262 | | -0.02761648 0.99961859 -0.00008572 22.39020609 |
| 5263 | | -0.99961860 -0.02761647 0.00006611 325.18094660 |
| 5264 | | 0.00006372 0.00008752 1.00000000 24.38059754 |
| 5265 | | Axis 0.00001071 -0.00007475 -1.00000000 |
| 5266 | | Axis point 169.35496789 151.69934766 0.00000000 |
| 5267 | | Rotation angle (degrees) 91.58250870 |
| 5268 | | Shift along axis -24.40466425 |
| 5269 | | |
| 5270 | | |
| 5271 | | > fitmap #15 inMap #1 |
| 5272 | | |
| 5273 | | Fit map M257_POPE_C2_P38_J250.mrc in map WT_PIP2_P68_J150_009_volume_map.mrc |
| 5274 | | using 12078 points |
| 5275 | | correlation = 0.8441, correlation about mean = 0.3777, overlap = 657.2 |
| 5276 | | steps = 48, shift = 0.0155, angle = 0.0106 degrees |
| 5277 | | |
| 5278 | | Position of M257_POPE_C2_P38_J250.mrc (#15) relative to |
| 5279 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5280 | | Matrix rotation and translation |
| 5281 | | -0.02761734 0.99961857 0.00008108 22.35558760 |
| 5282 | | -0.99961857 -0.02761734 -0.00001450 325.20292140 |
| 5283 | | -0.00001226 -0.00008145 1.00000000 24.41756722 |
| 5284 | | Axis -0.00003349 0.00004669 -1.00000000 |
| 5285 | | Axis point 169.34911232 151.72918786 0.00000000 |
| 5286 | | Rotation angle (degrees) 91.58255802 |
| 5287 | | Shift along axis -24.40313236 |
| 5288 | | |
| 5289 | | |
| 5290 | | > show #!16 models |
| 5291 | | |
| 5292 | | > hide #!15 models |
| 5293 | | |
| 5294 | | > volume #16 level 0.3693 |
| 5295 | | |
| 5296 | | > volume #16 step 1 |
| 5297 | | |
| 5298 | | > volume #13 step 1 |
| 5299 | | |
| 5300 | | > volume #15 step 1 |
| 5301 | | |
| 5302 | | > volume #14 step 1 |
| 5303 | | |
| 5304 | | > ui mousemode right "translate selected models" |
| 5305 | | |
| 5306 | | > select add #16 |
| 5307 | | |
| 5308 | | 2 models selected |
| 5309 | | |
| 5310 | | > view matrix models #16,1,0,0,-56.595,0,1,0,-71.964,0,0,1,-51.988 |
| 5311 | | |
| 5312 | | > view matrix models #16,1,0,0,-38.296,0,1,0,-43.509,0,0,1,-54.146 |
| 5313 | | |
| 5314 | | > show #!15 models |
| 5315 | | |
| 5316 | | > hide #!16 models |
| 5317 | | |
| 5318 | | > hide #!1 models |
| 5319 | | |
| 5320 | | > show #!16 models |
| 5321 | | |
| 5322 | | > hide #!15 models |
| 5323 | | |
| 5324 | | > ui mousemode right "rotate selected models" |
| 5325 | | |
| 5326 | | > show #!1 models |
| 5327 | | |
| 5328 | | > view matrix models |
| 5329 | | > #16,0.99746,0.014917,-0.06972,-30.19,0.00098553,0.97489,0.22268,-71.728,0.071291,-0.22218,0.97239,-27.339 |
| 5330 | | |
| 5331 | | > view matrix models |
| 5332 | | > #16,0.96319,0.26875,0.0062593,-74.323,-0.26314,0.9378,0.22648,-26.646,0.054996,-0.21979,0.974,-25.463 |
| 5333 | | |
| 5334 | | > view matrix models |
| 5335 | | > #16,0.95851,0.2539,0.12956,-89.014,-0.24533,0.96625,-0.078561,10.008,-0.14514,0.043517,0.98845,-37.101 |
| 5336 | | |
| 5337 | | > view matrix models |
| 5338 | | > #16,0.9422,0.30956,0.12816,-94.774,-0.30024,0.94988,-0.087065,22.022,-0.14869,0.043554,0.98792,-36.493 |
| 5339 | | |
| 5340 | | > fitmap #16 inMap #1 |
| 5341 | | |
| 5342 | | Fit map M257_POPE_C2_P38_J250_sharp.mrc in map |
| 5343 | | WT_PIP2_P68_J150_009_volume_map.mrc using 97390 points |
| 5344 | | correlation = 0.8266, correlation about mean = 0.4255, overlap = 9653 |
| 5345 | | steps = 128, shift = 8.44, angle = 9.38 degrees |
| 5346 | | |
| 5347 | | Position of M257_POPE_C2_P38_J250_sharp.mrc (#16) relative to |
| 5348 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5349 | | Matrix rotation and translation |
| 5350 | | -0.02937989 0.99956832 -0.00004198 22.64451997 |
| 5351 | | -0.99956832 -0.02937988 0.00009607 325.44925760 |
| 5352 | | 0.00009479 0.00004479 1.00000000 24.31347886 |
| 5353 | | Axis -0.00002565 -0.00006841 -1.00000000 |
| 5354 | | Axis point 169.33314922 151.72974080 0.00000000 |
| 5355 | | Rotation angle (degrees) 91.68358562 |
| 5356 | | Shift along axis -24.33632496 |
| 5357 | | |
| 5358 | | |
| 5359 | | > fitmap #16 inMap #1 |
| 5360 | | |
| 5361 | | Fit map M257_POPE_C2_P38_J250_sharp.mrc in map |
| 5362 | | WT_PIP2_P68_J150_009_volume_map.mrc using 97390 points |
| 5363 | | correlation = 0.8266, correlation about mean = 0.4255, overlap = 9653 |
| 5364 | | steps = 44, shift = 0.00244, angle = 0.00363 degrees |
| 5365 | | |
| 5366 | | Position of M257_POPE_C2_P38_J250_sharp.mrc (#16) relative to |
| 5367 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5368 | | Matrix rotation and translation |
| 5369 | | -0.02939108 0.99956799 -0.00008000 22.65073339 |
| 5370 | | -0.99956799 -0.02939107 0.00004669 325.45628025 |
| 5371 | | 0.00004431 0.00008134 1.00000000 24.31726615 |
| 5372 | | Axis 0.00001733 -0.00006218 -1.00000000 |
| 5373 | | Axis point 169.33849179 151.72992629 0.00000000 |
| 5374 | | Rotation angle (degrees) 91.68422710 |
| 5375 | | Shift along axis -24.33711119 |
| 5376 | | |
| 5377 | | |
| 5378 | | > fitmap #16 inMap #1 |
| 5379 | | |
| 5380 | | Fit map M257_POPE_C2_P38_J250_sharp.mrc in map |
| 5381 | | WT_PIP2_P68_J150_009_volume_map.mrc using 97390 points |
| 5382 | | correlation = 0.8266, correlation about mean = 0.4255, overlap = 9653 |
| 5383 | | steps = 40, shift = 0.00757, angle = 0.0192 degrees |
| 5384 | | |
| 5385 | | Position of M257_POPE_C2_P38_J250_sharp.mrc (#16) relative to |
| 5386 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5387 | | Matrix rotation and translation |
| 5388 | | -0.02940695 0.99956751 0.00020425 22.61918385 |
| 5389 | | -0.99956752 -0.02940692 -0.00012852 325.47853288 |
| 5390 | | -0.00012246 -0.00020794 0.99999998 24.38492306 |
| 5391 | | Axis -0.00003973 0.00016343 -0.99999999 |
| 5392 | | Axis point 169.33298329 151.75996741 0.00000000 |
| 5393 | | Rotation angle (degrees) 91.68513674 |
| 5394 | | Shift along axis -24.33262966 |
| 5395 | | |
| 5396 | | |
| 5397 | | > select clear |
| 5398 | | |
| 5399 | | > hide #!16 models |
| 5400 | | |
| 5401 | | > show #!2 models |
| 5402 | | |
| 5403 | | > fitmap #2 inMap #1 |
| 5404 | | |
| 5405 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 5406 | | WT_PIP2_P68_J150_009_volume_map.mrc using 99815 points |
| 5407 | | correlation = 0.971, correlation about mean = 0.8368, overlap = 7480 |
| 5408 | | steps = 24, shift = 0.000714, angle = 0.00187 degrees |
| 5409 | | |
| 5410 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) relative to |
| 5411 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5412 | | Matrix rotation and translation |
| 5413 | | 0.49984045 0.86611751 0.00001377 -62.06623734 |
| 5414 | | -0.86611750 0.49984044 0.00017121 231.70221565 |
| 5415 | | 0.00014140 -0.00009750 0.99999999 -0.01055102 |
| 5416 | | Axis -0.00015512 -0.00007368 -0.99999999 |
| 5417 | | Axis point 169.58420822 169.59061359 0.00000000 |
| 5418 | | Rotation angle (degrees) 60.01055616 |
| 5419 | | Shift along axis 0.00310696 |
| 5420 | | |
| 5421 | | |
| 5422 | | > fitmap #2 inMap #1 |
| 5423 | | |
| 5424 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 5425 | | WT_PIP2_P68_J150_009_volume_map.mrc using 99815 points |
| 5426 | | correlation = 0.971, correlation about mean = 0.8368, overlap = 7479 |
| 5427 | | steps = 24, shift = 0.000569, angle = 0.00185 degrees |
| 5428 | | |
| 5429 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) relative to |
| 5430 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5431 | | Matrix rotation and translation |
| 5432 | | 0.49984269 0.86611621 0.00002298 -62.06746585 |
| 5433 | | -0.86611620 0.49984268 0.00020203 231.69672752 |
| 5434 | | 0.00016349 -0.00012088 0.99999999 -0.01035222 |
| 5435 | | Axis -0.00018641 -0.00008111 -0.99999998 |
| 5436 | | Axis point 169.57944127 169.58909363 0.00000000 |
| 5437 | | Rotation angle (degrees) 60.01040829 |
| 5438 | | Shift along axis 0.00312904 |
| 5439 | | |
| 5440 | | |
| 5441 | | > fitmap #2 inMap #1 |
| 5442 | | |
| 5443 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 5444 | | WT_PIP2_P68_J150_009_volume_map.mrc using 99815 points |
| 5445 | | correlation = 0.971, correlation about mean = 0.8368, overlap = 7479 |
| 5446 | | steps = 24, shift = 0.000571, angle = 0.00227 degrees |
| 5447 | | |
| 5448 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) relative to |
| 5449 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 5450 | | Matrix rotation and translation |
| 5451 | | 0.49983636 0.86611986 0.00003776 -62.06897327 |
| 5452 | | -0.86611984 0.49983634 0.00023802 231.69257404 |
| 5453 | | 0.00018727 -0.00015167 0.99999998 -0.00922210 |
| 5454 | | Axis -0.00022496 -0.00008631 -0.99999997 |
| 5455 | | Axis point 169.57339967 169.58786874 0.00000000 |
| 5456 | | Rotation angle (degrees) 60.01082718 |
| 5457 | | Shift along axis 0.00318786 |
| 5458 | | |
| 5459 | | |
| 5460 | | > hide #!2 models |
| 5461 | | |
| 5462 | | > hide #!1 models |
| 5463 | | |
| 5464 | | > show #!3 models |
| 5465 | | |
| 5466 | | > show #!4 models |
| 5467 | | |
| 5468 | | > fitmap #4 inMap #3 |
| 5469 | | |
| 5470 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 5471 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 5472 | | correlation = 0.9589, correlation about mean = 0.7487, overlap = 1063 |
| 5473 | | steps = 40, shift = 0.0318, angle = 0.0883 degrees |
| 5474 | | |
| 5475 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 5476 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 5477 | | Matrix rotation and translation |
| 5478 | | 0.99999985 0.00055119 0.00000194 -0.09240209 |
| 5479 | | -0.00055119 0.99999985 0.00001029 0.08196583 |
| 5480 | | -0.00000193 -0.00001030 1.00000000 -0.01614407 |
| 5481 | | Axis -0.01867502 0.00351206 -0.99981944 |
| 5482 | | Axis point 148.54625996 167.06801976 0.00000000 |
| 5483 | | Rotation angle (degrees) 0.03158636 |
| 5484 | | Shift along axis 0.01815463 |
| 5485 | | |
| 5486 | | |
| 5487 | | > fitmap #4 inMap #3 |
| 5488 | | |
| 5489 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 5490 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 5491 | | correlation = 0.9589, correlation about mean = 0.7487, overlap = 1063 |
| 5492 | | steps = 24, shift = 0.000825, angle = 0.00129 degrees |
| 5493 | | |
| 5494 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 5495 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 5496 | | Matrix rotation and translation |
| 5497 | | 0.99999986 0.00054230 0.00000090 -0.09036619 |
| 5498 | | -0.00054230 0.99999986 -0.00001041 0.08349549 |
| 5499 | | -0.00000091 0.00001041 1.00000000 -0.02041424 |
| 5500 | | Axis 0.01919107 0.00166384 -0.99981445 |
| 5501 | | Axis point 153.86180876 167.34197317 0.00000000 |
| 5502 | | Rotation angle (degrees) 0.03107739 |
| 5503 | | Shift along axis 0.01881515 |
| 5504 | | |
| 5505 | | |
| 5506 | | > fitmap #4 inMap #3 |
| 5507 | | |
| 5508 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 5509 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 5510 | | correlation = 0.9589, correlation about mean = 0.7487, overlap = 1063 |
| 5511 | | steps = 24, shift = 0.000975, angle = 0.00108 degrees |
| 5512 | | |
| 5513 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 5514 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 5515 | | Matrix rotation and translation |
| 5516 | | 0.99999986 0.00053936 0.00000209 -0.09020968 |
| 5517 | | -0.00053936 0.99999986 -0.00002903 0.08503506 |
| 5518 | | -0.00000211 0.00002903 1.00000000 -0.02353809 |
| 5519 | | Axis 0.05374507 0.00389170 -0.99854711 |
| 5520 | | Axis point 157.47686114 169.18801060 0.00000000 |
| 5521 | | Rotation angle (degrees) 0.03094794 |
| 5522 | | Shift along axis 0.01898650 |
| 5523 | | |
| 5524 | | |
| 5525 | | > fitmap #4 inMap #3 |
| 5526 | | |
| 5527 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 5528 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 5529 | | correlation = 0.9588, correlation about mean = 0.7486, overlap = 1063 |
| 5530 | | steps = 24, shift = 0.00106, angle = 0.00104 degrees |
| 5531 | | |
| 5532 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 5533 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 5534 | | Matrix rotation and translation |
| 5535 | | 0.99999986 0.00053736 0.00000315 -0.09010829 |
| 5536 | | -0.00053736 0.99999986 -0.00004696 0.08652138 |
| 5537 | | -0.00000317 0.00004696 1.00000000 -0.02656146 |
| 5538 | | Axis 0.08705806 0.00586040 -0.99618600 |
| 5539 | | Axis point 160.75791326 170.82903542 0.00000000 |
| 5540 | | Rotation angle (degrees) 0.03090619 |
| 5541 | | Shift along axis 0.01912255 |
| 5542 | | |
| 5543 | | |
| 5544 | | > fitmap #4 inMap #3 |
| 5545 | | |
| 5546 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 5547 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 5548 | | correlation = 0.9588, correlation about mean = 0.7485, overlap = 1063 |
| 5549 | | steps = 24, shift = 0.0014, angle = 0.000995 degrees |
| 5550 | | |
| 5551 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 5552 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 5553 | | Matrix rotation and translation |
| 5554 | | 0.99999986 0.00053691 0.00000234 -0.09025616 |
| 5555 | | -0.00053690 0.99999986 -0.00006430 0.08825050 |
| 5556 | | -0.00000238 0.00006430 1.00000000 -0.03053340 |
| 5557 | | Axis 0.11891351 0.00435981 -0.99289504 |
| 5558 | | Axis point 164.15968367 172.57106631 0.00000000 |
| 5559 | | Rotation angle (degrees) 0.03098255 |
| 5560 | | Shift along axis 0.01996854 |
| 5561 | | |
| 5562 | | |
| 5563 | | > fitmap #4 inMap #3 |
| 5564 | | |
| 5565 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 5566 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 5567 | | correlation = 0.9588, correlation about mean = 0.7486, overlap = 1063 |
| 5568 | | steps = 28, shift = 0.0236, angle = 0.0132 degrees |
| 5569 | | |
| 5570 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 5571 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 5572 | | Matrix rotation and translation |
| 5573 | | 0.99999989 0.00046570 -0.00001470 -0.07453313 |
| 5574 | | -0.00046570 0.99999988 0.00015418 0.06520726 |
| 5575 | | 0.00001477 -0.00015417 0.99999999 0.00227487 |
| 5576 | | Axis -0.31413567 -0.03002360 -0.94890324 |
| 5577 | | Axis point 141.22543473 147.06022233 0.00000000 |
| 5578 | | Rotation angle (degrees) 0.02811964 |
| 5579 | | Shift along axis 0.01929713 |
| 5580 | | |
| 5581 | | |
| 5582 | | > fitmap #4 inMap #3 |
| 5583 | | |
| 5584 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 5585 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 5586 | | correlation = 0.9589, correlation about mean = 0.7487, overlap = 1063 |
| 5587 | | steps = 28, shift = 0.0235, angle = 0.0233 degrees |
| 5588 | | |
| 5589 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 5590 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 5591 | | Matrix rotation and translation |
| 5592 | | 0.99999989 0.00047905 0.00002003 -0.08305500 |
| 5593 | | -0.00047905 0.99999986 -0.00025013 0.10836878 |
| 5594 | | -0.00002016 0.00025012 0.99999997 -0.05793683 |
| 5595 | | Axis 0.46251908 0.03715812 -0.88583033 |
| 5596 | | Axis point 224.84576409 189.77740570 0.00000000 |
| 5597 | | Rotation angle (degrees) 0.03098511 |
| 5598 | | Shift along axis 0.01693446 |
| 5599 | | |
| 5600 | | |
| 5601 | | > hide #!4 models |
| 5602 | | |
| 5603 | | > hide #!3 models |
| 5604 | | |
| 5605 | | > show #!6 models |
| 5606 | | |
| 5607 | | > hide #!6 models |
| 5608 | | |
| 5609 | | > show #!5 models |
| 5610 | | |
| 5611 | | > hide #!5 models |
| 5612 | | |
| 5613 | | > show #!6 models |
| 5614 | | |
| 5615 | | > fitmap #6 inMap #5 |
| 5616 | | |
| 5617 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 5618 | | N55H_CBX_P52_J650_003_volume_map.mrc using 82839 points |
| 5619 | | correlation = 0.9775, correlation about mean = 0.7763, overlap = 3190 |
| 5620 | | steps = 60, shift = 0.262, angle = 0.175 degrees |
| 5621 | | |
| 5622 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 5623 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 5624 | | Matrix rotation and translation |
| 5625 | | 0.99999999 0.00013389 0.00000625 -0.01917133 |
| 5626 | | -0.00013389 0.99999999 0.00000271 0.02873917 |
| 5627 | | -0.00000625 -0.00000271 1.00000000 -0.01741979 |
| 5628 | | Axis -0.02022973 0.04661059 -0.99870827 |
| 5629 | | Axis point 207.98263717 140.31306037 0.00000000 |
| 5630 | | Rotation angle (degrees) 0.00768117 |
| 5631 | | Shift along axis 0.01912467 |
| 5632 | | |
| 5633 | | |
| 5634 | | > fitmap #6 inMap #5 |
| 5635 | | |
| 5636 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 5637 | | N55H_CBX_P52_J650_003_volume_map.mrc using 82839 points |
| 5638 | | correlation = 0.9776, correlation about mean = 0.7766, overlap = 3191 |
| 5639 | | steps = 44, shift = 0.0148, angle = 0.00826 degrees |
| 5640 | | |
| 5641 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 5642 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 5643 | | Matrix rotation and translation |
| 5644 | | 1.00000000 -0.00000858 -0.00001115 0.00192696 |
| 5645 | | 0.00000858 1.00000000 -0.00001145 -0.00647080 |
| 5646 | | 0.00001115 0.00001145 1.00000000 -0.02181622 |
| 5647 | | Axis 0.63132344 -0.61450785 0.47308649 |
| 5648 | | Axis point -0.00000000 1692.86492808 -840.06636952 |
| 5649 | | Rotation angle (degrees) 0.00103951 |
| 5650 | | Shift along axis -0.00512806 |
| 5651 | | |
| 5652 | | |
| 5653 | | > fitmap #6 inMap #5 |
| 5654 | | |
| 5655 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 5656 | | N55H_CBX_P52_J650_003_volume_map.mrc using 82839 points |
| 5657 | | correlation = 0.9775, correlation about mean = 0.7758, overlap = 3188 |
| 5658 | | steps = 28, shift = 0.0214, angle = 0.0106 degrees |
| 5659 | | |
| 5660 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 5661 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 5662 | | Matrix rotation and translation |
| 5663 | | 0.99999999 0.00017015 0.00001754 -0.03173266 |
| 5664 | | -0.00017015 0.99999999 0.00002805 0.03841492 |
| 5665 | | -0.00001753 -0.00002806 1.00000000 -0.01165769 |
| 5666 | | Axis -0.16185045 0.10117054 -0.98161548 |
| 5667 | | Axis point 213.58301363 167.04604809 0.00000000 |
| 5668 | | Rotation angle (degrees) 0.00993165 |
| 5669 | | Shift along axis 0.02046577 |
| 5670 | | |
| 5671 | | |
| 5672 | | > fitmap #6 inMap #5 |
| 5673 | | |
| 5674 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 5675 | | N55H_CBX_P52_J650_003_volume_map.mrc using 82839 points |
| 5676 | | correlation = 0.9775, correlation about mean = 0.7763, overlap = 3190 |
| 5677 | | steps = 40, shift = 0.0225, angle = 0.00516 degrees |
| 5678 | | |
| 5679 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 5680 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 5681 | | Matrix rotation and translation |
| 5682 | | 0.99999997 0.00022898 -0.00002173 -0.03518817 |
| 5683 | | -0.00022898 0.99999997 -0.00002756 0.03441227 |
| 5684 | | 0.00002173 0.00002757 1.00000000 -0.02690326 |
| 5685 | | Axis 0.11899632 -0.09379608 -0.98845444 |
| 5686 | | Axis point 158.12166382 163.65845403 0.00000000 |
| 5687 | | Rotation angle (degrees) 0.01327282 |
| 5688 | | Shift along axis 0.01917765 |
| 5689 | | |
| 5690 | | |
| 5691 | | > fitmap #6 inMap #5 |
| 5692 | | |
| 5693 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 5694 | | N55H_CBX_P52_J650_003_volume_map.mrc using 82839 points |
| 5695 | | correlation = 0.9775, correlation about mean = 0.7761, overlap = 3189 |
| 5696 | | steps = 28, shift = 0.0219, angle = 0.0127 degrees |
| 5697 | | |
| 5698 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 5699 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 5700 | | Matrix rotation and translation |
| 5701 | | 1.00000000 0.00001507 0.00001440 -0.00479665 |
| 5702 | | -0.00001507 1.00000000 0.00002131 0.01303426 |
| 5703 | | -0.00001440 -0.00002131 1.00000000 -0.01115593 |
| 5704 | | Axis -0.71497916 0.48301444 -0.50547191 |
| 5705 | | Axis point 0.00000000 -159.06759722 -263.41424560 |
| 5706 | | Rotation angle (degrees) 0.00170765 |
| 5707 | | Shift along axis 0.01536425 |
| 5708 | | |
| 5709 | | |
| 5710 | | > fitmap #6 inMap #5 |
| 5711 | | |
| 5712 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 5713 | | N55H_CBX_P52_J650_003_volume_map.mrc using 82839 points |
| 5714 | | correlation = 0.9776, correlation about mean = 0.7764, overlap = 3190 |
| 5715 | | steps = 40, shift = 0.0213, angle = 0.00855 degrees |
| 5716 | | |
| 5717 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 5718 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 5719 | | Matrix rotation and translation |
| 5720 | | 0.99999999 0.00015851 -0.00000937 -0.02502099 |
| 5721 | | -0.00015851 0.99999999 -0.00001263 0.02095367 |
| 5722 | | 0.00000937 0.00001263 1.00000000 -0.02243841 |
| 5723 | | Axis 0.07929327 -0.05881619 -0.99511468 |
| 5724 | | Axis point 139.27027763 167.42364491 0.00000000 |
| 5725 | | Rotation angle (degrees) 0.00912651 |
| 5726 | | Shift along axis 0.01911238 |
| 5727 | | |
| 5728 | | |
| 5729 | | > fitmap #6 inMap #5 |
| 5730 | | |
| 5731 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 5732 | | N55H_CBX_P52_J650_003_volume_map.mrc using 82839 points |
| 5733 | | correlation = 0.9776, correlation about mean = 0.7764, overlap = 3190 |
| 5734 | | steps = 28, shift = 0.0177, angle = 0.00819 degrees |
| 5735 | | |
| 5736 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 5737 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 5738 | | Matrix rotation and translation |
| 5739 | | 1.00000000 0.00001859 0.00000813 -0.00392441 |
| 5740 | | -0.00001859 1.00000000 0.00001118 0.01165082 |
| 5741 | | -0.00000813 -0.00001118 1.00000000 -0.01443627 |
| 5742 | | Axis -0.48247479 0.35096052 -0.80252402 |
| 5743 | | Axis point 294.99137908 -244.78073583 0.00000000 |
| 5744 | | Rotation angle (degrees) 0.00132755 |
| 5745 | | Shift along axis 0.01756785 |
| 5746 | | |
| 5747 | | |
| 5748 | | > fitmap #6 inMap #5 |
| 5749 | | |
| 5750 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 5751 | | N55H_CBX_P52_J650_003_volume_map.mrc using 82839 points |
| 5752 | | correlation = 0.9776, correlation about mean = 0.7766, overlap = 3191 |
| 5753 | | steps = 40, shift = 0.0151, angle = 0.00797 degrees |
| 5754 | | |
| 5755 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 5756 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 5757 | | Matrix rotation and translation |
| 5758 | | 0.99999999 0.00015625 -0.00000385 -0.02537294 |
| 5759 | | -0.00015625 0.99999999 -0.00000521 0.02198442 |
| 5760 | | 0.00000385 0.00000521 1.00000000 -0.02006773 |
| 5761 | | Axis 0.03329683 -0.02461891 -0.99914225 |
| 5762 | | Axis point 143.62414402 166.37091649 0.00000000 |
| 5763 | | Rotation angle (degrees) 0.00896040 |
| 5764 | | Shift along axis 0.01866445 |
| 5765 | | |
| 5766 | | |
| 5767 | | > fitmap #6 inMap #5 |
| 5768 | | |
| 5769 | | Fit map N55H_CBX_P52_J650_003_volume_map_sharp.mrc in map |
| 5770 | | N55H_CBX_P52_J650_003_volume_map.mrc using 82839 points |
| 5771 | | correlation = 0.9775, correlation about mean = 0.7762, overlap = 3190 |
| 5772 | | steps = 28, shift = 0.0156, angle = 0.00993 degrees |
| 5773 | | |
| 5774 | | Position of N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) relative to |
| 5775 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 5776 | | Matrix rotation and translation |
| 5777 | | 1.00000000 -0.00001419 0.00001688 0.00141571 |
| 5778 | | 0.00001419 1.00000000 0.00001789 0.00557351 |
| 5779 | | -0.00001688 -0.00001789 1.00000000 -0.01310405 |
| 5780 | | Axis -0.62991864 0.59444727 0.49983492 |
| 5781 | | Axis point 0.00000000 -617.17708422 -448.76557029 |
| 5782 | | Rotation angle (degrees) 0.00162710 |
| 5783 | | Shift along axis -0.00412848 |
| 5784 | | |
| 5785 | | |
| 5786 | | > show #!5 models |
| 5787 | | |
| 5788 | | > hide #!5 models |
| 5789 | | |
| 5790 | | > hide #!6 models |
| 5791 | | |
| 5792 | | > show #!8 models |
| 5793 | | |
| 5794 | | > show #!7 models |
| 5795 | | |
| 5796 | | > hide #!8 models |
| 5797 | | |
| 5798 | | > hide #!7 models |
| 5799 | | |
| 5800 | | > show #!8 models |
| 5801 | | |
| 5802 | | > fitmap #8 inMap #7 |
| 5803 | | |
| 5804 | | Fit map MBCD_P41_J50_013_volume_map_sharp.mrc in map |
| 5805 | | MBCD_P41_J50_013_volume_map.mrc using 167414 points |
| 5806 | | correlation = 0.9592, correlation about mean = 0.8729, overlap = 6878 |
| 5807 | | steps = 28, shift = 0.0112, angle = 0.0226 degrees |
| 5808 | | |
| 5809 | | Position of MBCD_P41_J50_013_volume_map_sharp.mrc (#8) relative to |
| 5810 | | MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 5811 | | Matrix rotation and translation |
| 5812 | | 1.00000000 0.00004752 -0.00000058 -0.00508582 |
| 5813 | | -0.00004752 1.00000000 -0.00000002 0.00516433 |
| 5814 | | 0.00000058 0.00000002 1.00000000 0.00077921 |
| 5815 | | Axis 0.00042198 -0.01223589 -0.99992505 |
| 5816 | | Axis point 108.45586571 107.01873636 0.00000000 |
| 5817 | | Rotation angle (degrees) 0.00272293 |
| 5818 | | Shift along axis -0.00084449 |
| 5819 | | |
| 5820 | | |
| 5821 | | > fitmap #8 inMap #7 |
| 5822 | | |
| 5823 | | Fit map MBCD_P41_J50_013_volume_map_sharp.mrc in map |
| 5824 | | MBCD_P41_J50_013_volume_map.mrc using 167414 points |
| 5825 | | correlation = 0.9591, correlation about mean = 0.8727, overlap = 6872 |
| 5826 | | steps = 24, shift = 0.00284, angle = 0.00995 degrees |
| 5827 | | |
| 5828 | | Position of MBCD_P41_J50_013_volume_map_sharp.mrc (#8) relative to |
| 5829 | | MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 5830 | | Matrix rotation and translation |
| 5831 | | 0.99999999 -0.00012620 0.00000067 0.01376194 |
| 5832 | | 0.00012620 0.99999999 0.00000089 -0.01369917 |
| 5833 | | -0.00000068 -0.00000089 1.00000000 0.00384887 |
| 5834 | | Axis -0.00706566 0.00534856 0.99996073 |
| 5835 | | Axis point 108.71746430 109.25109556 0.00000000 |
| 5836 | | Rotation angle (degrees) 0.00723079 |
| 5837 | | Shift along axis 0.00367821 |
| 5838 | | |
| 5839 | | |
| 5840 | | > fitmap #8 inMap #7 |
| 5841 | | |
| 5842 | | Fit map MBCD_P41_J50_013_volume_map_sharp.mrc in map |
| 5843 | | MBCD_P41_J50_013_volume_map.mrc using 167414 points |
| 5844 | | correlation = 0.9591, correlation about mean = 0.8725, overlap = 6866 |
| 5845 | | steps = 24, shift = 0.00344, angle = 0.00354 degrees |
| 5846 | | |
| 5847 | | Position of MBCD_P41_J50_013_volume_map_sharp.mrc (#8) relative to |
| 5848 | | MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 5849 | | Matrix rotation and translation |
| 5850 | | 0.99999998 -0.00018790 0.00000038 0.02060857 |
| 5851 | | 0.00018790 0.99999998 0.00000079 -0.02029832 |
| 5852 | | -0.00000038 -0.00000079 1.00000000 0.00724350 |
| 5853 | | Axis -0.00423058 0.00203756 0.99998898 |
| 5854 | | Axis point 108.11568794 109.82940882 0.00000000 |
| 5855 | | Rotation angle (degrees) 0.01076590 |
| 5856 | | Shift along axis 0.00711487 |
| 5857 | | |
| 5858 | | |
| 5859 | | > fitmap #8 inMap #7 |
| 5860 | | |
| 5861 | | Fit map MBCD_P41_J50_013_volume_map_sharp.mrc in map |
| 5862 | | MBCD_P41_J50_013_volume_map.mrc using 167414 points |
| 5863 | | correlation = 0.959, correlation about mean = 0.8723, overlap = 6858 |
| 5864 | | steps = 28, shift = 0.0248, angle = 0.0164 degrees |
| 5865 | | |
| 5866 | | Position of MBCD_P41_J50_013_volume_map_sharp.mrc (#8) relative to |
| 5867 | | MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 5868 | | Matrix rotation and translation |
| 5869 | | 1.00000000 0.00009869 -0.00000252 -0.01057560 |
| 5870 | | -0.00009869 1.00000000 -0.00000236 0.01088564 |
| 5871 | | 0.00000252 0.00000236 1.00000000 -0.01818008 |
| 5872 | | Axis 0.02391665 -0.02549781 -0.99938874 |
| 5873 | | Axis point 114.85175271 111.43883942 0.00000000 |
| 5874 | | Rotation angle (degrees) 0.00565804 |
| 5875 | | Shift along axis 0.01763848 |
| 5876 | | |
| 5877 | | |
| 5878 | | > fitmap #8 inMap #7 |
| 5879 | | |
| 5880 | | Fit map MBCD_P41_J50_013_volume_map_sharp.mrc in map |
| 5881 | | MBCD_P41_J50_013_volume_map.mrc using 167414 points |
| 5882 | | correlation = 0.959, correlation about mean = 0.8723, overlap = 6858 |
| 5883 | | steps = 24, shift = 0.000193, angle = 0.000916 degrees |
| 5884 | | |
| 5885 | | Position of MBCD_P41_J50_013_volume_map_sharp.mrc (#8) relative to |
| 5886 | | MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 5887 | | Matrix rotation and translation |
| 5888 | | 0.99999999 0.00010106 -0.00001826 -0.00936267 |
| 5889 | | -0.00010106 0.99999999 -0.00000090 0.01112222 |
| 5890 | | 0.00001826 0.00000091 1.00000000 -0.01984722 |
| 5891 | | Axis 0.00880526 -0.17778757 -0.98402949 |
| 5892 | | Axis point 140.78936883 94.17692744 0.00000000 |
| 5893 | | Rotation angle (degrees) 0.00588412 |
| 5894 | | Shift along axis 0.01747042 |
| 5895 | | |
| 5896 | | |
| 5897 | | > fitmap #8 inMap #7 |
| 5898 | | |
| 5899 | | Fit map MBCD_P41_J50_013_volume_map_sharp.mrc in map |
| 5900 | | MBCD_P41_J50_013_volume_map.mrc using 167414 points |
| 5901 | | correlation = 0.959, correlation about mean = 0.8723, overlap = 6858 |
| 5902 | | steps = 24, shift = 0.00062, angle = 0.00205 degrees |
| 5903 | | |
| 5904 | | Position of MBCD_P41_J50_013_volume_map_sharp.mrc (#8) relative to |
| 5905 | | MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 5906 | | Matrix rotation and translation |
| 5907 | | 1.00000000 0.00008611 -0.00003194 -0.00654472 |
| 5908 | | -0.00008611 1.00000000 0.00002854 0.00713335 |
| 5909 | | 0.00003194 -0.00002854 1.00000000 -0.01837319 |
| 5910 | | Axis -0.29671287 -0.33211949 -0.89535363 |
| 5911 | | Axis point 144.63529658 20.79829810 0.00000000 |
| 5912 | | Rotation angle (degrees) 0.00551057 |
| 5913 | | Shift along axis 0.01602328 |
| 5914 | | |
| 5915 | | |
| 5916 | | > fitmap #8 inMap #7 |
| 5917 | | |
| 5918 | | Fit map MBCD_P41_J50_013_volume_map_sharp.mrc in map |
| 5919 | | MBCD_P41_J50_013_volume_map.mrc using 167414 points |
| 5920 | | correlation = 0.9591, correlation about mean = 0.8725, overlap = 6867 |
| 5921 | | steps = 28, shift = 0.0241, angle = 0.0162 degrees |
| 5922 | | |
| 5923 | | Position of MBCD_P41_J50_013_volume_map_sharp.mrc (#8) relative to |
| 5924 | | MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 5925 | | Matrix rotation and translation |
| 5926 | | 0.99999998 -0.00019310 -0.00000053 0.02097956 |
| 5927 | | 0.00019310 0.99999998 0.00000086 -0.02098391 |
| 5928 | | 0.00000053 -0.00000086 1.00000000 0.00611843 |
| 5929 | | Axis -0.00444030 -0.00276080 0.99998633 |
| 5930 | | Axis point 108.59376973 108.77711118 0.00000000 |
| 5931 | | Rotation angle (degrees) 0.01106380 |
| 5932 | | Shift along axis 0.00608313 |
| 5933 | | |
| 5934 | | |
| 5935 | | > hide #!8 models |
| 5936 | | |
| 5937 | | > show #!10 models |
| 5938 | | |
| 5939 | | > fitmap #10 inMap #9 |
| 5940 | | |
| 5941 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 5942 | | POPE_C6_P58_J139_004_volume_map.mrc using 54922 points |
| 5943 | | correlation = 0.9074, correlation about mean = 0.5736, overlap = 5.28e+04 |
| 5944 | | steps = 48, shift = 0.193, angle = 0.0568 degrees |
| 5945 | | |
| 5946 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 5947 | | POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 5948 | | Matrix rotation and translation |
| 5949 | | 0.99999997 0.00024058 -0.00004451 -0.03115888 |
| 5950 | | -0.00024058 0.99999997 -0.00009998 0.03042301 |
| 5951 | | 0.00004448 0.00009999 0.99999999 -0.08485667 |
| 5952 | | Axis 0.37830695 -0.16835513 -0.91024195 |
| 5953 | | Axis point 168.64409246 224.40956528 0.00000000 |
| 5954 | | Rotation angle (degrees) 0.01514332 |
| 5955 | | Shift along axis 0.06033061 |
| 5956 | | |
| 5957 | | |
| 5958 | | > fitmap #10 inMap #9 |
| 5959 | | |
| 5960 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 5961 | | POPE_C6_P58_J139_004_volume_map.mrc using 54922 points |
| 5962 | | correlation = 0.9076, correlation about mean = 0.5744, overlap = 5.286e+04 |
| 5963 | | steps = 40, shift = 0.019, angle = 0.00521 degrees |
| 5964 | | |
| 5965 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 5966 | | POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 5967 | | Matrix rotation and translation |
| 5968 | | 0.99999995 0.00032817 -0.00002148 -0.04324035 |
| 5969 | | -0.00032817 0.99999994 -0.00009201 0.06040807 |
| 5970 | | 0.00002145 0.00009202 1.00000000 -0.08075426 |
| 5971 | | Axis 0.26945093 -0.06285834 -0.96096047 |
| 5972 | | Axis point 195.94773520 182.82735064 0.00000000 |
| 5973 | | Rotation angle (degrees) 0.01956661 |
| 5974 | | Shift along axis 0.06215335 |
| 5975 | | |
| 5976 | | |
| 5977 | | > fitmap #10 inMap #9 |
| 5978 | | |
| 5979 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 5980 | | POPE_C6_P58_J139_004_volume_map.mrc using 54922 points |
| 5981 | | correlation = 0.9076, correlation about mean = 0.5742, overlap = 5.284e+04 |
| 5982 | | steps = 44, shift = 0.00433, angle = 0.0132 degrees |
| 5983 | | |
| 5984 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 5985 | | POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 5986 | | Matrix rotation and translation |
| 5987 | | 0.99999991 0.00041245 0.00000886 -0.05898719 |
| 5988 | | -0.00041245 0.99999991 0.00012093 0.03987755 |
| 5989 | | -0.00000881 -0.00012093 0.99999999 -0.04898751 |
| 5990 | | Axis -0.28129795 0.02055495 -0.95940031 |
| 5991 | | Axis point 93.45177575 99.10591578 0.00000000 |
| 5992 | | Rotation angle (degrees) 0.02463180 |
| 5993 | | Shift along axis 0.06441129 |
| 5994 | | |
| 5995 | | |
| 5996 | | > fitmap #10 inMap #9 |
| 5997 | | |
| 5998 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 5999 | | POPE_C6_P58_J139_004_volume_map.mrc using 54922 points |
| 6000 | | correlation = 0.9075, correlation about mean = 0.5741, overlap = 5.283e+04 |
| 6001 | | steps = 44, shift = 0.00611, angle = 0.0115 degrees |
| 6002 | | |
| 6003 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 6004 | | POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 6005 | | Matrix rotation and translation |
| 6006 | | 0.99999992 0.00041157 -0.00002130 -0.05486735 |
| 6007 | | -0.00041157 0.99999991 -0.00007805 0.07233298 |
| 6008 | | 0.00002127 0.00007806 1.00000000 -0.08363278 |
| 6009 | | Axis 0.18608570 -0.05074224 -0.98122237 |
| 6010 | | Axis point 184.11881900 164.17744867 0.00000000 |
| 6011 | | Rotation angle (degrees) 0.02403261 |
| 6012 | | Shift along axis 0.06818199 |
| 6013 | | |
| 6014 | | |
| 6015 | | > fitmap #10 inMap #9 |
| 6016 | | |
| 6017 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 6018 | | POPE_C6_P58_J139_004_volume_map.mrc using 54922 points |
| 6019 | | correlation = 0.9074, correlation about mean = 0.5737, overlap = 5.28e+04 |
| 6020 | | steps = 40, shift = 0.0164, angle = 0.00486 degrees |
| 6021 | | |
| 6022 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 6023 | | POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 6024 | | Matrix rotation and translation |
| 6025 | | 0.99999988 0.00049596 -0.00001548 -0.06705826 |
| 6026 | | -0.00049596 0.99999987 -0.00008501 0.06937561 |
| 6027 | | 0.00001544 0.00008502 1.00000000 -0.07945702 |
| 6028 | | Axis 0.16887899 -0.03070933 -0.98515827 |
| 6029 | | Axis point 143.85526683 157.31805413 0.00000000 |
| 6030 | | Rotation angle (degrees) 0.02884444 |
| 6031 | | Shift along axis 0.06482253 |
| 6032 | | |
| 6033 | | |
| 6034 | | > fitmap #10 inMap #9 |
| 6035 | | |
| 6036 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 6037 | | POPE_C6_P58_J139_004_volume_map.mrc using 54922 points |
| 6038 | | correlation = 0.9074, correlation about mean = 0.5736, overlap = 5.28e+04 |
| 6039 | | steps = 40, shift = 0.0254, angle = 0.0105 degrees |
| 6040 | | |
| 6041 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 6042 | | POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 6043 | | Matrix rotation and translation |
| 6044 | | 0.99999988 0.00049137 0.00003641 -0.07206157 |
| 6045 | | -0.00049137 0.99999988 0.00009060 0.07028528 |
| 6046 | | -0.00003636 -0.00009062 1.00000000 -0.04785929 |
| 6047 | | Axis -0.18086684 0.07262584 -0.98082245 |
| 6048 | | Axis point 133.38971120 122.73362700 0.00000000 |
| 6049 | | Rotation angle (degrees) 0.02870371 |
| 6050 | | Shift along axis 0.06507955 |
| 6051 | | |
| 6052 | | |
| 6053 | | > fitmap #10 inMap #9 |
| 6054 | | |
| 6055 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 6056 | | POPE_C6_P58_J139_004_volume_map.mrc using 54922 points |
| 6057 | | correlation = 0.9076, correlation about mean = 0.5742, overlap = 5.285e+04 |
| 6058 | | steps = 40, shift = 0.00953, angle = 0.0139 degrees |
| 6059 | | |
| 6060 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 6061 | | POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 6062 | | Matrix rotation and translation |
| 6063 | | 0.99999996 0.00025772 0.00007491 -0.03844036 |
| 6064 | | -0.00025772 0.99999997 0.00003452 0.03760464 |
| 6065 | | -0.00007490 -0.00003454 1.00000000 -0.04932415 |
| 6066 | | Axis -0.12762121 0.27682525 -0.95240779 |
| 6067 | | Axis point 78.98769853 118.32205363 0.00000000 |
| 6068 | | Rotation angle (degrees) 0.01550392 |
| 6069 | | Shift along axis 0.06229242 |
| 6070 | | |
| 6071 | | |
| 6072 | | > fitmap #10 inMap #9 |
| 6073 | | |
| 6074 | | Fit map POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 6075 | | POPE_C6_P58_J139_004_volume_map.mrc using 54922 points |
| 6076 | | correlation = 0.9074, correlation about mean = 0.5736, overlap = 5.28e+04 |
| 6077 | | steps = 44, shift = 0.00614, angle = 0.0144 degrees |
| 6078 | | |
| 6079 | | Position of POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 6080 | | POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 6081 | | Matrix rotation and translation |
| 6082 | | 0.99999987 0.00050603 0.00006901 -0.06845080 |
| 6083 | | -0.00050603 0.99999987 -0.00000760 0.07381286 |
| 6084 | | -0.00006901 0.00000756 1.00000000 -0.05681728 |
| 6085 | | Axis 0.01484075 0.13511135 -0.99071927 |
| 6086 | | Axis point 128.41120788 137.21730184 0.00000000 |
| 6087 | | Rotation angle (degrees) 0.02926488 |
| 6088 | | Shift along axis 0.06524707 |
| 6089 | | |
| 6090 | | |
| 6091 | | > show #!9 models |
| 6092 | | |
| 6093 | | > hide #!10 models |
| 6094 | | |
| 6095 | | > hide #!9 models |
| 6096 | | |
| 6097 | | > show #!13 models |
| 6098 | | |
| 6099 | | > show #!14 models |
| 6100 | | |
| 6101 | | > hide #!13 models |
| 6102 | | |
| 6103 | | > show #!13 models |
| 6104 | | |
| 6105 | | > hide #!13 models |
| 6106 | | |
| 6107 | | > fitmap #14 inMap #13 |
| 6108 | | |
| 6109 | | Fit map M257_POPE_C6_P38_J358_sharp.mrc in map M257_POPE_C6_P38_J358.mrc using |
| 6110 | | 115765 points |
| 6111 | | correlation = 0.9892, correlation about mean = 0.8953, overlap = 1.49e+04 |
| 6112 | | steps = 48, shift = 0.14, angle = 0.023 degrees |
| 6113 | | |
| 6114 | | Position of M257_POPE_C6_P38_J358_sharp.mrc (#14) relative to |
| 6115 | | M257_POPE_C6_P38_J358.mrc (#13) coordinates: |
| 6116 | | Matrix rotation and translation |
| 6117 | | -0.99999998 0.00023449 -0.00000421 302.90638269 |
| 6118 | | -0.00023450 -0.99999999 0.00000134 302.98355713 |
| 6119 | | -0.00000421 0.00000134 1.00000001 0.02737558 |
| 6120 | | Axis 0.00000569 -0.00000258 -1.00000000 |
| 6121 | | Axis point 151.47095350 151.47402098 0.00000000 |
| 6122 | | Rotation angle (degrees) 179.98656439 |
| 6123 | | Shift along axis -0.02643350 |
| 6124 | | |
| 6125 | | |
| 6126 | | > fitmap #14 inMap #13 |
| 6127 | | |
| 6128 | | Fit map M257_POPE_C6_P38_J358_sharp.mrc in map M257_POPE_C6_P38_J358.mrc using |
| 6129 | | 115765 points |
| 6130 | | correlation = 0.9892, correlation about mean = 0.8953, overlap = 1.49e+04 |
| 6131 | | steps = 44, shift = 0.0183, angle = 0.011 degrees |
| 6132 | | |
| 6133 | | Position of M257_POPE_C6_P38_J358_sharp.mrc (#14) relative to |
| 6134 | | M257_POPE_C6_P38_J358.mrc (#13) coordinates: |
| 6135 | | Matrix rotation and translation |
| 6136 | | -0.99999998 0.00017357 -0.00017867 302.94242834 |
| 6137 | | -0.00017356 -1.00000000 -0.00004962 302.96397238 |
| 6138 | | -0.00017868 -0.00004958 0.99999999 0.06236017 |
| 6139 | | Axis 0.00009417 0.00002222 -1.00000000 |
| 6140 | | Axis point 151.48436288 151.46884205 0.00000000 |
| 6141 | | Rotation angle (degrees) 179.99005562 |
| 6142 | | Shift along axis -0.02709816 |
| 6143 | | |
| 6144 | | |
| 6145 | | > fitmap #14 inMap #13 |
| 6146 | | |
| 6147 | | Fit map M257_POPE_C6_P38_J358_sharp.mrc in map M257_POPE_C6_P38_J358.mrc using |
| 6148 | | 115765 points |
| 6149 | | correlation = 0.9892, correlation about mean = 0.8953, overlap = 1.49e+04 |
| 6150 | | steps = 28, shift = 0.0144, angle = 0.016 degrees |
| 6151 | | |
| 6152 | | Position of M257_POPE_C6_P38_J358_sharp.mrc (#14) relative to |
| 6153 | | M257_POPE_C6_P38_J358.mrc (#13) coordinates: |
| 6154 | | Matrix rotation and translation |
| 6155 | | -0.99999994 0.00037470 0.00000870 302.88137888 |
| 6156 | | -0.00037471 -0.99999994 0.00000271 303.00059820 |
| 6157 | | 0.00000870 0.00000271 1.00000001 0.02635525 |
| 6158 | | Axis -0.00000211 -0.00000255 -1.00000000 |
| 6159 | | Axis point 151.46907340 151.47192624 0.00000000 |
| 6160 | | Rotation angle (degrees) 179.97853096 |
| 6161 | | Shift along axis -0.02776532 |
| 6162 | | |
| 6163 | | |
| 6164 | | > fitmap #14 inMap #13 |
| 6165 | | |
| 6166 | | Fit map M257_POPE_C6_P38_J358_sharp.mrc in map M257_POPE_C6_P38_J358.mrc using |
| 6167 | | 115765 points |
| 6168 | | correlation = 0.9892, correlation about mean = 0.8953, overlap = 1.49e+04 |
| 6169 | | steps = 44, shift = 0.0113, angle = 0.00731 degrees |
| 6170 | | |
| 6171 | | Position of M257_POPE_C6_P38_J358_sharp.mrc (#14) relative to |
| 6172 | | M257_POPE_C6_P38_J358.mrc (#13) coordinates: |
| 6173 | | Matrix rotation and translation |
| 6174 | | -0.99999998 0.00025000 -0.00001693 302.90553628 |
| 6175 | | -0.00025000 -0.99999998 -0.00000464 302.97160730 |
| 6176 | | -0.00001693 -0.00000463 1.00000001 0.03151126 |
| 6177 | | Axis 0.00001182 0.00000053 -1.00000000 |
| 6178 | | Axis point 151.47170427 151.46687184 0.00000000 |
| 6179 | | Rotation angle (degrees) 179.98567589 |
| 6180 | | Shift along axis -0.02776952 |
| 6181 | | |
| 6182 | | |
| 6183 | | > fitmap #14 inMap #13 |
| 6184 | | |
| 6185 | | Fit map M257_POPE_C6_P38_J358_sharp.mrc in map M257_POPE_C6_P38_J358.mrc using |
| 6186 | | 115765 points |
| 6187 | | correlation = 0.9892, correlation about mean = 0.8953, overlap = 1.49e+04 |
| 6188 | | steps = 44, shift = 0.0178, angle = 0.0105 degrees |
| 6189 | | |
| 6190 | | Position of M257_POPE_C6_P38_J358_sharp.mrc (#14) relative to |
| 6191 | | M257_POPE_C6_P38_J358.mrc (#13) coordinates: |
| 6192 | | Matrix rotation and translation |
| 6193 | | -0.99999997 0.00025611 0.00015764 302.87517911 |
| 6194 | | -0.00025611 -0.99999998 0.00005062 302.98164074 |
| 6195 | | 0.00015766 0.00005059 1.00000000 -0.00344672 |
| 6196 | | Axis -0.00007555 -0.00002705 -1.00000000 |
| 6197 | | Axis point 151.45698901 151.47142791 0.00000000 |
| 6198 | | Rotation angle (degrees) 179.98532586 |
| 6199 | | Shift along axis -0.02762950 |
| 6200 | | |
| 6201 | | |
| 6202 | | > hide #!14 models |
| 6203 | | |
| 6204 | | > show #!15 models |
| 6205 | | |
| 6206 | | > fitmap #16 inMap #15 |
| 6207 | | |
| 6208 | | Fit map M257_POPE_C2_P38_J250_sharp.mrc in map M257_POPE_C2_P38_J250.mrc using |
| 6209 | | 97390 points |
| 6210 | | correlation = 0.9415, correlation about mean = 0.6841, overlap = 2.819e+04 |
| 6211 | | steps = 40, shift = 0.0433, angle = 0.0715 degrees |
| 6212 | | |
| 6213 | | Position of M257_POPE_C2_P38_J250_sharp.mrc (#16) relative to |
| 6214 | | M257_POPE_C2_P38_J250.mrc (#15) coordinates: |
| 6215 | | Matrix rotation and translation |
| 6216 | | 0.99999985 0.00054916 0.00005761 -0.09516842 |
| 6217 | | -0.00054916 0.99999985 0.00001304 0.08084848 |
| 6218 | | -0.00005760 -0.00001307 1.00000000 -0.01521159 |
| 6219 | | Axis -0.02364215 0.10429416 -0.99426545 |
| 6220 | | Axis point 142.27427499 172.22756707 0.00000000 |
| 6221 | | Rotation angle (degrees) 0.03164588 |
| 6222 | | Shift along axis 0.02580637 |
| 6223 | | |
| 6224 | | |
| 6225 | | > fitmap #16 inMap #15 |
| 6226 | | |
| 6227 | | Fit map M257_POPE_C2_P38_J250_sharp.mrc in map M257_POPE_C2_P38_J250.mrc using |
| 6228 | | 97390 points |
| 6229 | | correlation = 0.9415, correlation about mean = 0.684, overlap = 2.819e+04 |
| 6230 | | steps = 28, shift = 0.0149, angle = 0.00906 degrees |
| 6231 | | |
| 6232 | | Position of M257_POPE_C2_P38_J250_sharp.mrc (#16) relative to |
| 6233 | | M257_POPE_C2_P38_J250.mrc (#15) coordinates: |
| 6234 | | Matrix rotation and translation |
| 6235 | | 0.99999983 0.00054481 0.00020033 -0.09993066 |
| 6236 | | -0.00054480 0.99999985 -0.00005481 0.08676963 |
| 6237 | | -0.00020036 0.00005470 0.99999998 -0.00389516 |
| 6238 | | Axis 0.09391418 0.34362189 -0.93440041 |
| 6239 | | Axis point 144.03613699 187.61786894 0.00000000 |
| 6240 | | Rotation angle (degrees) 0.03340626 |
| 6241 | | Shift along axis 0.02407068 |
| 6242 | | |
| 6243 | | |
| 6244 | | > fitmap #16 inMap #15 |
| 6245 | | |
| 6246 | | Fit map M257_POPE_C2_P38_J250_sharp.mrc in map M257_POPE_C2_P38_J250.mrc using |
| 6247 | | 97390 points |
| 6248 | | correlation = 0.9415, correlation about mean = 0.684, overlap = 2.819e+04 |
| 6249 | | steps = 28, shift = 0.0221, angle = 0.0264 degrees |
| 6250 | | |
| 6251 | | Position of M257_POPE_C2_P38_J250_sharp.mrc (#16) relative to |
| 6252 | | M257_POPE_C2_P38_J250.mrc (#15) coordinates: |
| 6253 | | Matrix rotation and translation |
| 6254 | | 0.99999982 0.00053769 -0.00024884 -0.05721246 |
| 6255 | | -0.00053768 0.99999985 0.00004964 0.07696221 |
| 6256 | | 0.00024887 -0.00004951 0.99999997 -0.05617801 |
| 6257 | | Axis -0.08338454 -0.41856378 -0.90435136 |
| 6258 | | Axis point 161.29717266 102.83428451 0.00000000 |
| 6259 | | Rotation angle (degrees) 0.03406520 |
| 6260 | | Shift along axis 0.02336170 |
| 6261 | | |
| 6262 | | |
| 6263 | | > fitmap #16 inMap #15 |
| 6264 | | |
| 6265 | | Fit map M257_POPE_C2_P38_J250_sharp.mrc in map M257_POPE_C2_P38_J250.mrc using |
| 6266 | | 97390 points |
| 6267 | | correlation = 0.9415, correlation about mean = 0.684, overlap = 2.819e+04 |
| 6268 | | steps = 28, shift = 0.0196, angle = 0.0257 degrees |
| 6269 | | |
| 6270 | | Position of M257_POPE_C2_P38_J250_sharp.mrc (#16) relative to |
| 6271 | | M257_POPE_C2_P38_J250.mrc (#15) coordinates: |
| 6272 | | Matrix rotation and translation |
| 6273 | | 0.99999983 0.00054469 0.00019226 -0.10096020 |
| 6274 | | -0.00054468 0.99999985 -0.00003505 0.08566738 |
| 6275 | | -0.00019228 0.00003494 0.99999998 -0.00211528 |
| 6276 | | Axis 0.06047140 0.33225337 -0.94124965 |
| 6277 | | Axis point 142.37486021 188.10011365 0.00000000 |
| 6278 | | Rotation angle (degrees) 0.03315622 |
| 6279 | | Shift along axis 0.02434907 |
| 6280 | | |
| 6281 | | |
| 6282 | | > fitmap #16 inMap #15 |
| 6283 | | |
| 6284 | | Fit map M257_POPE_C2_P38_J250_sharp.mrc in map M257_POPE_C2_P38_J250.mrc using |
| 6285 | | 97390 points |
| 6286 | | correlation = 0.9415, correlation about mean = 0.6841, overlap = 2.819e+04 |
| 6287 | | steps = 28, shift = 0.0169, angle = 0.0253 degrees |
| 6288 | | |
| 6289 | | Position of M257_POPE_C2_P38_J250_sharp.mrc (#16) relative to |
| 6290 | | M257_POPE_C2_P38_J250.mrc (#15) coordinates: |
| 6291 | | Matrix rotation and translation |
| 6292 | | 0.99999982 0.00054803 -0.00023705 -0.05769852 |
| 6293 | | -0.00054802 0.99999985 0.00007142 0.07514864 |
| 6294 | | 0.00023709 -0.00007129 0.99999997 -0.05105295 |
| 6295 | | Axis -0.11864943 -0.39422450 -0.91132286 |
| 6296 | | Axis point 154.18244321 100.19177884 0.00000000 |
| 6297 | | Rotation angle (degrees) 0.03445494 |
| 6298 | | Shift along axis 0.02374619 |
| 6299 | | |
| 6300 | | |
| 6301 | | > fitmap #16 inMap #15 |
| 6302 | | |
| 6303 | | Fit map M257_POPE_C2_P38_J250_sharp.mrc in map M257_POPE_C2_P38_J250.mrc using |
| 6304 | | 97390 points |
| 6305 | | correlation = 0.9415, correlation about mean = 0.6841, overlap = 2.819e+04 |
| 6306 | | steps = 28, shift = 0.0163, angle = 0.0261 degrees |
| 6307 | | |
| 6308 | | Position of M257_POPE_C2_P38_J250_sharp.mrc (#16) relative to |
| 6309 | | M257_POPE_C2_P38_J250.mrc (#15) coordinates: |
| 6310 | | Matrix rotation and translation |
| 6311 | | 0.99999983 0.00054475 0.00020342 -0.10314471 |
| 6312 | | -0.00054474 0.99999985 -0.00004616 0.08705204 |
| 6313 | | -0.00020345 0.00004605 0.99999998 -0.00210500 |
| 6314 | | Axis 0.07903192 0.34875129 -0.93387713 |
| 6315 | | Axis point 144.27426272 192.89362322 0.00000000 |
| 6316 | | Rotation angle (degrees) 0.03342179 |
| 6317 | | Shift along axis 0.02417360 |
| 6318 | | |
| 6319 | | |
| 6320 | | > fitmap #16 inMap #15 |
| 6321 | | |
| 6322 | | Fit map M257_POPE_C2_P38_J250_sharp.mrc in map M257_POPE_C2_P38_J250.mrc using |
| 6323 | | 97390 points |
| 6324 | | correlation = 0.9415, correlation about mean = 0.6841, overlap = 2.819e+04 |
| 6325 | | steps = 28, shift = 0.0155, angle = 0.0257 degrees |
| 6326 | | |
| 6327 | | Position of M257_POPE_C2_P38_J250_sharp.mrc (#16) relative to |
| 6328 | | M257_POPE_C2_P38_J250.mrc (#15) coordinates: |
| 6329 | | Matrix rotation and translation |
| 6330 | | 0.99999982 0.00054913 -0.00022777 -0.05835874 |
| 6331 | | -0.00054911 0.99999985 0.00007573 0.07454867 |
| 6332 | | 0.00022782 -0.00007561 0.99999997 -0.04898544 |
| 6333 | | Axis -0.12626556 -0.38010764 -0.91628336 |
| 6334 | | Axis point 152.28970373 100.82469736 0.00000000 |
| 6335 | | Rotation angle (degrees) 0.03433687 |
| 6336 | | Shift along axis 0.02391673 |
| 6337 | | |
| 6338 | | |
| 6339 | | > fitmap #16 inMap #15 |
| 6340 | | |
| 6341 | | Fit map M257_POPE_C2_P38_J250_sharp.mrc in map M257_POPE_C2_P38_J250.mrc using |
| 6342 | | 97390 points |
| 6343 | | correlation = 0.9415, correlation about mean = 0.6841, overlap = 2.819e+04 |
| 6344 | | steps = 28, shift = 0.0147, angle = 0.0262 degrees |
| 6345 | | |
| 6346 | | Position of M257_POPE_C2_P38_J250_sharp.mrc (#16) relative to |
| 6347 | | M257_POPE_C2_P38_J250.mrc (#15) coordinates: |
| 6348 | | Matrix rotation and translation |
| 6349 | | 0.99999983 0.00054768 0.00020915 -0.10524708 |
| 6350 | | -0.00054767 0.99999985 -0.00005679 0.08905797 |
| 6351 | | -0.00020919 0.00005667 0.99999998 -0.00282936 |
| 6352 | | Axis 0.09631443 0.35512710 -0.92984315 |
| 6353 | | Axis point 146.91701098 196.45588582 0.00000000 |
| 6354 | | Rotation angle (degrees) 0.03374718 |
| 6355 | | Shift along axis 0.02412094 |
| 6356 | | |
| 6357 | | |
| 6358 | | > select clear |
| 6359 | | |
| 6360 | | > save "C:/Users/OJS/OneDrive - |
| 6361 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 6362 | | |
| 6363 | | > show #!16 models |
| 6364 | | |
| 6365 | | > hide #!16 models |
| 6366 | | |
| 6367 | | > show #!16 models |
| 6368 | | |
| 6369 | | > hide #!16 models |
| 6370 | | |
| 6371 | | > show #!16 models |
| 6372 | | |
| 6373 | | > hide #!16 models |
| 6374 | | |
| 6375 | | > open "C:/Users/OJS/OneDrive - |
| 6376 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Models/230809_PIP2_HC_85.pdb" |
| 6377 | | |
| 6378 | | Chain information for 230809_PIP2_HC_85.pdb #11 |
| 6379 | | --- |
| 6380 | | Chain | Description |
| 6381 | | A B C D E F | No description available |
| 6382 | | |
| 6383 | | |
| 6384 | | > color #11 #ff007fff |
| 6385 | | |
| 6386 | | > color #11 #ff557fff |
| 6387 | | |
| 6388 | | > rename #11 id #17 |
| 6389 | | |
| 6390 | | > rename #30 id #11 |
| 6391 | | |
| 6392 | | > rename #31 id #12 |
| 6393 | | |
| 6394 | | > hide #!15 models |
| 6395 | | |
| 6396 | | > show #!2 models |
| 6397 | | |
| 6398 | | > hide #!2 models |
| 6399 | | |
| 6400 | | > show #!2 models |
| 6401 | | |
| 6402 | | > ui mousemode right "translate selected models" |
| 6403 | | |
| 6404 | | > select add #17 |
| 6405 | | |
| 6406 | | 11430 atoms, 11646 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 6407 | | |
| 6408 | | > view matrix models #17,1,0,0,-50.17,0,1,0,-52.751,0,0,1,-90.807 |
| 6409 | | |
| 6410 | | > view matrix models #17,1,0,0,-48.624,0,1,0,-38.335,0,0,1,-74.94 |
| 6411 | | |
| 6412 | | > view matrix models #17,1,0,0,-59.243,0,1,0,-59.771,0,0,1,-71.021 |
| 6413 | | |
| 6414 | | > hide sel atoms |
| 6415 | | |
| 6416 | | > show sel cartoons |
| 6417 | | |
| 6418 | | > fitmap #17 inMap #2 |
| 6419 | | |
| 6420 | | Fit molecule 230809_PIP2_HC_85.pdb (#17) to map |
| 6421 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) using 11430 atoms |
| 6422 | | average map value = 0.3626, steps = 96 |
| 6423 | | shifted from previous position = 2.22 |
| 6424 | | rotated from previous position = 10.9 degrees |
| 6425 | | atoms outside contour = 2620, contour level = 0.1849 |
| 6426 | | |
| 6427 | | Position of 230809_PIP2_HC_85.pdb (#17) relative to |
| 6428 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) coordinates: |
| 6429 | | Matrix rotation and translation |
| 6430 | | 0.99999999 0.00009774 -0.00002671 -0.00161005 |
| 6431 | | -0.00009774 0.99999999 0.00011432 -0.00238563 |
| 6432 | | 0.00002672 -0.00011431 0.99999999 0.01669555 |
| 6433 | | Axis -0.74834922 -0.17491593 -0.63982644 |
| 6434 | | Axis point 0.00000000 95.33821482 34.74110510 |
| 6435 | | Rotation angle (degrees) 0.00875226 |
| 6436 | | Shift along axis -0.00906009 |
| 6437 | | |
| 6438 | | |
| 6439 | | > fitmap #17 inMap #2 |
| 6440 | | |
| 6441 | | Fit molecule 230809_PIP2_HC_85.pdb (#17) to map |
| 6442 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) using 11430 atoms |
| 6443 | | average map value = 0.3626, steps = 24 |
| 6444 | | shifted from previous position = 0.00318 |
| 6445 | | rotated from previous position = 0.0136 degrees |
| 6446 | | atoms outside contour = 2622, contour level = 0.1849 |
| 6447 | | |
| 6448 | | Position of 230809_PIP2_HC_85.pdb (#17) relative to |
| 6449 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) coordinates: |
| 6450 | | Matrix rotation and translation |
| 6451 | | 0.99999998 0.00016648 0.00012701 -0.03941683 |
| 6452 | | -0.00016648 0.99999998 -0.00005340 0.03458696 |
| 6453 | | -0.00012702 0.00005338 0.99999999 0.01422386 |
| 6454 | | Axis 0.24708112 0.58774550 -0.77039350 |
| 6455 | | Axis point 209.03740561 236.23969777 0.00000000 |
| 6456 | | Rotation angle (degrees) 0.01238156 |
| 6457 | | Shift along axis -0.00036879 |
| 6458 | | |
| 6459 | | |
| 6460 | | > fitmap #17 inMap #2 |
| 6461 | | |
| 6462 | | Fit molecule 230809_PIP2_HC_85.pdb (#17) to map |
| 6463 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) using 11430 atoms |
| 6464 | | average map value = 0.3626, steps = 24 |
| 6465 | | shifted from previous position = 0.000327 |
| 6466 | | rotated from previous position = 0.0042 degrees |
| 6467 | | atoms outside contour = 2626, contour level = 0.1849 |
| 6468 | | |
| 6469 | | Position of 230809_PIP2_HC_85.pdb (#17) relative to |
| 6470 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#2) coordinates: |
| 6471 | | Matrix rotation and translation |
| 6472 | | 0.99999997 0.00016452 0.00019600 -0.05069753 |
| 6473 | | -0.00016451 0.99999998 -0.00007817 0.03815123 |
| 6474 | | -0.00019601 0.00007814 0.99999998 0.02174730 |
| 6475 | | Axis 0.29210445 0.73254808 -0.61485633 |
| 6476 | | Axis point 110.18777296 0.00000000 258.33025232 |
| 6477 | | Rotation angle (degrees) 0.01533064 |
| 6478 | | Shift along axis -0.00023283 |
| 6479 | | |
| 6480 | | |
| 6481 | | > select clear |
| 6482 | | |
| 6483 | | > transparency 30 |
| 6484 | | |
| 6485 | | > select clear |
| 6486 | | |
| 6487 | | > transparency 50 |
| 6488 | | |
| 6489 | | > transparency 80 |
| 6490 | | |
| 6491 | | > transparency 50 |
| 6492 | | |
| 6493 | | > transparency 30 |
| 6494 | | |
| 6495 | | > select clear |
| 6496 | | |
| 6497 | | > open "C:/Users/OJS/OneDrive - |
| 6498 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Models/230904_Chol_HC_150.pdb" |
| 6499 | | |
| 6500 | | Summary of feedback from opening C:/Users/OJS/OneDrive - |
| 6501 | | korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Models/230904_Chol_HC_150.pdb |
| 6502 | | --- |
| 6503 | | warnings | Duplicate atom serial number found: 1 |
| 6504 | | Duplicate atom serial number found: 2 |
| 6505 | | Duplicate atom serial number found: 3 |
| 6506 | | Duplicate atom serial number found: 4 |
| 6507 | | Duplicate atom serial number found: 5 |
| 6508 | | 9495 messages similar to the above omitted |
| 6509 | | |
| 6510 | | Chain information for 230904_Chol_HC_150.pdb #18 |
| 6511 | | --- |
| 6512 | | Chain | Description |
| 6513 | | A B C D E F | No description available |
| 6514 | | |
| 6515 | | |
| 6516 | | > open "C:/Users/OJS/OneDrive - |
| 6517 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Models/230926_CBX_HC_181.pdb" |
| 6518 | | |
| 6519 | | Chain information for 230926_CBX_HC_181.pdb #19 |
| 6520 | | --- |
| 6521 | | Chain | Description |
| 6522 | | A B C D E F | No description available |
| 6523 | | |
| 6524 | | |
| 6525 | | > open "C:/Users/OJS/OneDrive - |
| 6526 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Models/230926_MBCD_HC_10.pdb" |
| 6527 | | |
| 6528 | | Chain information for 230926_MBCD_HC_10.pdb #20 |
| 6529 | | --- |
| 6530 | | Chain | Description |
| 6531 | | A B C D E F | No description available |
| 6532 | | |
| 6533 | | |
| 6534 | | > hide #!17-20 atoms |
| 6535 | | |
| 6536 | | > show #!17-20 cartoons |
| 6537 | | |
| 6538 | | > color #18 #00aaffff |
| 6539 | | |
| 6540 | | > color #19 #aa55ffff |
| 6541 | | |
| 6542 | | > color #20 #ffff7fff |
| 6543 | | |
| 6544 | | > show #!7 models |
| 6545 | | |
| 6546 | | > hide #!7 models |
| 6547 | | |
| 6548 | | > hide #!2 models |
| 6549 | | |
| 6550 | | > show #!3 models |
| 6551 | | |
| 6552 | | > hide #!3 models |
| 6553 | | |
| 6554 | | > hide #!17 models |
| 6555 | | |
| 6556 | | > hide #!19 models |
| 6557 | | |
| 6558 | | > hide #!20 models |
| 6559 | | |
| 6560 | | > show #!3 models |
| 6561 | | |
| 6562 | | > hide #!3 models |
| 6563 | | |
| 6564 | | > show #!4 models |
| 6565 | | |
| 6566 | | > ui mousemode right "translate selected models" |
| 6567 | | |
| 6568 | | > select add #4 |
| 6569 | | |
| 6570 | | 2 models selected |
| 6571 | | |
| 6572 | | > view matrix models |
| 6573 | | > #4,0.98598,0.16689,-6.2247e-05,-83.237,-0.16689,0.98598,-0.00028856,-28.341,1.3215e-05,0.00029491,1,-66.353 |
| 6574 | | |
| 6575 | | > fitmap #4 inMap #3 |
| 6576 | | |
| 6577 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 6578 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 6579 | | correlation = 0.9587, correlation about mean = 0.7478, overlap = 1061 |
| 6580 | | steps = 60, shift = 2.57, angle = 0.0222 degrees |
| 6581 | | |
| 6582 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 6583 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 6584 | | Matrix rotation and translation |
| 6585 | | 0.99999970 0.00077202 0.00000277 -0.12842009 |
| 6586 | | -0.00077201 0.99999971 0.00000395 0.12769686 |
| 6587 | | -0.00000277 -0.00000395 1.00000000 -0.02790394 |
| 6588 | | Axis -0.00511477 0.00359104 -0.99998047 |
| 6589 | | Axis point 165.20797882 166.21545399 0.00000000 |
| 6590 | | Rotation angle (degrees) 0.04423410 |
| 6591 | | Shift along axis 0.02901879 |
| 6592 | | |
| 6593 | | |
| 6594 | | > fitmap #4 inMap #3 |
| 6595 | | |
| 6596 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 6597 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 6598 | | correlation = 0.9588, correlation about mean = 0.7484, overlap = 1062 |
| 6599 | | steps = 28, shift = 0.000642, angle = 0.0155 degrees |
| 6600 | | |
| 6601 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 6602 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 6603 | | Matrix rotation and translation |
| 6604 | | 0.99999988 0.00050111 -0.00000174 -0.08289972 |
| 6605 | | -0.00050111 0.99999988 -0.00000132 0.08337078 |
| 6606 | | 0.00000174 0.00000132 1.00000000 -0.03013319 |
| 6607 | | Axis 0.00264134 -0.00347976 -0.99999046 |
| 6608 | | Axis point 166.53748985 165.63111584 0.00000000 |
| 6609 | | Rotation angle (degrees) 0.02871158 |
| 6610 | | Shift along axis 0.02962383 |
| 6611 | | |
| 6612 | | |
| 6613 | | > fitmap #4 inMap #3 |
| 6614 | | |
| 6615 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 6616 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 6617 | | correlation = 0.9588, correlation about mean = 0.7486, overlap = 1063 |
| 6618 | | steps = 28, shift = 0.00529, angle = 0.00875 degrees |
| 6619 | | |
| 6620 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 6621 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 6622 | | Matrix rotation and translation |
| 6623 | | 0.99999991 0.00041939 0.00009004 -0.07970298 |
| 6624 | | -0.00041939 0.99999991 0.00008936 0.05850703 |
| 6625 | | -0.00009001 -0.00008940 0.99999999 0.00004279 |
| 6626 | | Axis -0.20398850 0.20546374 -0.95716944 |
| 6627 | | Axis point 125.63086367 176.33929505 0.00000000 |
| 6628 | | Rotation angle (degrees) 0.02510451 |
| 6629 | | Shift along axis 0.02823861 |
| 6630 | | |
| 6631 | | |
| 6632 | | > fitmap #4 inMap #3 |
| 6633 | | |
| 6634 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 6635 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 6636 | | correlation = 0.9589, correlation about mean = 0.7487, overlap = 1063 |
| 6637 | | steps = 36, shift = 0.0123, angle = 0.00789 degrees |
| 6638 | | |
| 6639 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 6640 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 6641 | | Matrix rotation and translation |
| 6642 | | 0.99999986 0.00053877 0.00002407 -0.08970412 |
| 6643 | | -0.00053877 0.99999986 0.00007044 0.08536274 |
| 6644 | | -0.00002404 -0.00007046 1.00000000 -0.00249267 |
| 6645 | | Axis -0.12952993 0.04422948 -0.99058859 |
| 6646 | | Axis point 156.92891605 162.24585982 0.00000000 |
| 6647 | | Rotation angle (degrees) 0.03116251 |
| 6648 | | Shift along axis 0.01786412 |
| 6649 | | |
| 6650 | | |
| 6651 | | > fitmap #4 inMap #3 |
| 6652 | | |
| 6653 | | Fit map N55H_CBX_P52_J575_011_volume_map_sharp.mrc in map |
| 6654 | | N55H_CBX_P52_J575_011_volume_map.mrc using 12433 points |
| 6655 | | correlation = 0.9589, correlation about mean = 0.7487, overlap = 1063 |
| 6656 | | steps = 24, shift = 0.00328, angle = 0.00163 degrees |
| 6657 | | |
| 6658 | | Position of N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) relative to |
| 6659 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 6660 | | Matrix rotation and translation |
| 6661 | | 0.99999986 0.00052982 -0.00000032 -0.08680692 |
| 6662 | | -0.00052981 0.99999986 0.00008189 0.08407010 |
| 6663 | | 0.00000036 -0.00008189 1.00000000 -0.00540741 |
| 6664 | | Axis -0.15275181 -0.00063577 -0.98826438 |
| 6665 | | Axis point 158.65751395 158.53757848 0.00000000 |
| 6666 | | Rotation angle (degrees) 0.03071664 |
| 6667 | | Shift along axis 0.01855042 |
| 6668 | | |
| 6669 | | |
| 6670 | | > select subtract #4 |
| 6671 | | |
| 6672 | | Nothing selected |
| 6673 | | |
| 6674 | | > select add #18 |
| 6675 | | |
| 6676 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 6677 | | |
| 6678 | | > view matrix models #18,1,0,0,-33.231,0,1,0,-70.28,0,0,1,-69.119 |
| 6679 | | |
| 6680 | | > view matrix models #18,1,0,0,-56.752,0,1,0,-60.845,0,0,1,-74.385 |
| 6681 | | |
| 6682 | | > fitmap #18 inMap #3 |
| 6683 | | |
| 6684 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 6685 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 6686 | | average map value = 0.06959, steps = 92 |
| 6687 | | shifted from previous position = 3.49 |
| 6688 | | rotated from previous position = 5.08 degrees |
| 6689 | | atoms outside contour = 8249, contour level = 0.10065 |
| 6690 | | |
| 6691 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 6692 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 6693 | | Matrix rotation and translation |
| 6694 | | 0.99692341 -0.07838189 0.00005617 13.51889258 |
| 6695 | | 0.07838190 0.99692339 -0.00019944 -12.47182784 |
| 6696 | | -0.00004036 0.00020323 0.99999998 -9.94326303 |
| 6697 | | Axis 0.00256859 0.00061575 0.99999651 |
| 6698 | | Axis point 165.56585131 166.30096983 0.00000000 |
| 6699 | | Rotation angle (degrees) 4.49557871 |
| 6700 | | Shift along axis -9.91618345 |
| 6701 | | |
| 6702 | | |
| 6703 | | > fitmap #18 inMap #3 |
| 6704 | | |
| 6705 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 6706 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 6707 | | average map value = 0.06958, steps = 60 |
| 6708 | | shifted from previous position = 0.0139 |
| 6709 | | rotated from previous position = 0.0156 degrees |
| 6710 | | atoms outside contour = 8243, contour level = 0.10065 |
| 6711 | | |
| 6712 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 6713 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 6714 | | Matrix rotation and translation |
| 6715 | | 0.99690298 -0.07864127 0.00009551 13.55868484 |
| 6716 | | 0.07864128 0.99690297 -0.00012857 -12.52619862 |
| 6717 | | -0.00008511 0.00013569 0.99999999 -9.91106215 |
| 6718 | | Axis 0.00168016 0.00114835 0.99999793 |
| 6719 | | Axis point 165.67939452 166.09866992 0.00000000 |
| 6720 | | Rotation angle (degrees) 4.51047966 |
| 6721 | | Shift along axis -9.90264530 |
| 6722 | | |
| 6723 | | |
| 6724 | | > view matrix models |
| 6725 | | > #18,0.99609,0.088359,3.2406e-05,-69.57,-0.088359,0.99609,-0.00018126,-41.728,-4.8296e-05,0.00017769,1,-64.242 |
| 6726 | | |
| 6727 | | > fitmap #18 inMap #3 |
| 6728 | | |
| 6729 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 6730 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 6731 | | average map value = 0.166, steps = 64 |
| 6732 | | shifted from previous position = 1.98 |
| 6733 | | rotated from previous position = 4.58 degrees |
| 6734 | | atoms outside contour = 3063, contour level = 0.10065 |
| 6735 | | |
| 6736 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 6737 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 6738 | | Matrix rotation and translation |
| 6739 | | 0.99999932 0.00116433 -0.00005879 -0.18393871 |
| 6740 | | -0.00116433 0.99999932 -0.00010661 0.20774894 |
| 6741 | | 0.00005866 0.00010668 1.00000000 -0.03341080 |
| 6742 | | Axis 0.09109683 -0.05016095 -0.99457792 |
| 6743 | | Axis point 178.59479778 158.55612130 0.00000000 |
| 6744 | | Rotation angle (degrees) 0.06707500 |
| 6745 | | Shift along axis 0.00605253 |
| 6746 | | |
| 6747 | | |
| 6748 | | > select clear |
| 6749 | | |
| 6750 | | > show #!19 models |
| 6751 | | |
| 6752 | | > hide #!18 models |
| 6753 | | |
| 6754 | | > hide #!4 models |
| 6755 | | |
| 6756 | | > show #!6 models |
| 6757 | | |
| 6758 | | > select add #19 |
| 6759 | | |
| 6760 | | 8634 atoms, 8916 bonds, 6 pseudobonds, 1020 residues, 2 models selected |
| 6761 | | |
| 6762 | | > view matrix models #19,1,0,0,-19.238,0,1,0,-72.039,0,0,1,-54.961 |
| 6763 | | |
| 6764 | | > view matrix models #19,1,0,0,-47.764,0,1,0,-61.635,0,0,1,-75.729 |
| 6765 | | |
| 6766 | | > view matrix models #19,1,0,0,-57.946,0,1,0,-56.54,0,0,1,-63.989 |
| 6767 | | |
| 6768 | | > fitmap #19 inMap #6 |
| 6769 | | |
| 6770 | | Fit molecule 230926_CBX_HC_181.pdb (#19) to map |
| 6771 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) using 8634 atoms |
| 6772 | | average map value = 0.04901, steps = 60 |
| 6773 | | shifted from previous position = 2.44 |
| 6774 | | rotated from previous position = 1.43 degrees |
| 6775 | | atoms outside contour = 7099, contour level = 0.14616 |
| 6776 | | |
| 6777 | | Position of 230926_CBX_HC_181.pdb (#19) relative to |
| 6778 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) coordinates: |
| 6779 | | Matrix rotation and translation |
| 6780 | | 0.88376224 0.46791617 0.00433058 -59.30912431 |
| 6781 | | -0.46776742 0.88365418 -0.01867940 103.02713435 |
| 6782 | | -0.01256712 0.01448244 0.99981615 -2.88010978 |
| 6783 | | Axis 0.03541329 0.01804493 -0.99920983 |
| 6784 | | Axis point 177.60162724 171.07019505 0.00000000 |
| 6785 | | Rotation angle (degrees) 27.91828071 |
| 6786 | | Shift along axis 2.63662034 |
| 6787 | | |
| 6788 | | |
| 6789 | | > fitmap #19 inMap #6 |
| 6790 | | |
| 6791 | | Fit molecule 230926_CBX_HC_181.pdb (#19) to map |
| 6792 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) using 8634 atoms |
| 6793 | | average map value = 0.04903, steps = 44 |
| 6794 | | shifted from previous position = 0.0548 |
| 6795 | | rotated from previous position = 0.0598 degrees |
| 6796 | | atoms outside contour = 7104, contour level = 0.14616 |
| 6797 | | |
| 6798 | | Position of 230926_CBX_HC_181.pdb (#19) relative to |
| 6799 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) coordinates: |
| 6800 | | Matrix rotation and translation |
| 6801 | | 0.88354650 0.46831939 0.00474549 -59.45828237 |
| 6802 | | -0.46815354 0.88343143 -0.01952357 103.25953686 |
| 6803 | | -0.01333559 0.01502837 0.99979813 -2.82487869 |
| 6804 | | Axis 0.03686387 0.01929092 -0.99913408 |
| 6805 | | Axis point 177.78747095 171.37648545 0.00000000 |
| 6806 | | Rotation angle (degrees) 27.94619956 |
| 6807 | | Shift along axis 2.62254127 |
| 6808 | | |
| 6809 | | |
| 6810 | | > fitmap #19 inMap #6 |
| 6811 | | |
| 6812 | | Fit molecule 230926_CBX_HC_181.pdb (#19) to map |
| 6813 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) using 8634 atoms |
| 6814 | | average map value = 0.04903, steps = 28 |
| 6815 | | shifted from previous position = 0.0208 |
| 6816 | | rotated from previous position = 0.0176 degrees |
| 6817 | | atoms outside contour = 7106, contour level = 0.14616 |
| 6818 | | |
| 6819 | | Position of 230926_CBX_HC_181.pdb (#19) relative to |
| 6820 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) coordinates: |
| 6821 | | Matrix rotation and translation |
| 6822 | | 0.88363025 0.46816235 0.00464760 -59.43249858 |
| 6823 | | -0.46799494 0.88351036 -0.01975277 103.23740309 |
| 6824 | | -0.01335370 0.01527909 0.99979409 -2.87142811 |
| 6825 | | Axis 0.03738783 0.01921193 -0.99911614 |
| 6826 | | Axis point 177.83306922 171.36198035 0.00000000 |
| 6827 | | Rotation angle (degrees) 27.93650074 |
| 6828 | | Shift along axis 2.63022789 |
| 6829 | | |
| 6830 | | |
| 6831 | | > ui mousemode right "rotate selected models" |
| 6832 | | |
| 6833 | | > view matrix models |
| 6834 | | > #19,0.92631,0.33563,0.17117,-130.29,-0.34848,0.93594,0.05068,5.364,-0.14319,-0.10659,0.98394,-21.158 |
| 6835 | | |
| 6836 | | > view matrix models |
| 6837 | | > #19,0.91251,0.40806,0.028453,-116.9,-0.40902,0.91117,0.049703,19.68,-0.0056431,-0.056992,0.99836,-54.555 |
| 6838 | | |
| 6839 | | > fitmap #19 inMap #6 |
| 6840 | | |
| 6841 | | Fit molecule 230926_CBX_HC_181.pdb (#19) to map |
| 6842 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) using 8634 atoms |
| 6843 | | average map value = 0.1677, steps = 84 |
| 6844 | | shifted from previous position = 3.91 |
| 6845 | | rotated from previous position = 9.49 degrees |
| 6846 | | atoms outside contour = 3990, contour level = 0.14616 |
| 6847 | | |
| 6848 | | Position of 230926_CBX_HC_181.pdb (#19) relative to |
| 6849 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) coordinates: |
| 6850 | | Matrix rotation and translation |
| 6851 | | 0.49989397 0.86608661 -0.00005537 -60.75119150 |
| 6852 | | -0.86608661 0.49989396 -0.00009401 226.77277705 |
| 6853 | | -0.00005374 0.00009495 0.99999999 -0.00444179 |
| 6854 | | Axis 0.00010908 -0.00000094 -0.99999999 |
| 6855 | | Axis point 165.98762893 165.99102646 0.00000000 |
| 6856 | | Rotation angle (degrees) 60.00701503 |
| 6857 | | Shift along axis -0.00239837 |
| 6858 | | |
| 6859 | | |
| 6860 | | > fitmap #19 inMap #6 |
| 6861 | | |
| 6862 | | Fit molecule 230926_CBX_HC_181.pdb (#19) to map |
| 6863 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) using 8634 atoms |
| 6864 | | average map value = 0.1677, steps = 28 |
| 6865 | | shifted from previous position = 0.00988 |
| 6866 | | rotated from previous position = 0.0129 degrees |
| 6867 | | atoms outside contour = 3993, contour level = 0.14616 |
| 6868 | | |
| 6869 | | Position of 230926_CBX_HC_181.pdb (#19) relative to |
| 6870 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) coordinates: |
| 6871 | | Matrix rotation and translation |
| 6872 | | 0.49982973 0.86612367 -0.00015906 -60.73542500 |
| 6873 | | -0.86612367 0.49982975 0.00009258 226.76859341 |
| 6874 | | 0.00015970 0.00009149 0.99999998 -0.03968151 |
| 6875 | | Axis -0.00000063 -0.00018402 -0.99999998 |
| 6876 | | Axis point 165.97507836 165.97078373 0.00000000 |
| 6877 | | Rotation angle (degrees) 60.01126428 |
| 6878 | | Shift along axis -0.00200910 |
| 6879 | | |
| 6880 | | |
| 6881 | | > fitmap #19 inMap #6 |
| 6882 | | |
| 6883 | | Fit molecule 230926_CBX_HC_181.pdb (#19) to map |
| 6884 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) using 8634 atoms |
| 6885 | | average map value = 0.1677, steps = 44 |
| 6886 | | shifted from previous position = 0.00974 |
| 6887 | | rotated from previous position = 0.0164 degrees |
| 6888 | | atoms outside contour = 3991, contour level = 0.14616 |
| 6889 | | |
| 6890 | | Position of 230926_CBX_HC_181.pdb (#19) relative to |
| 6891 | | N55H_CBX_P52_J650_003_volume_map_sharp.mrc (#6) coordinates: |
| 6892 | | Matrix rotation and translation |
| 6893 | | 0.50001918 0.86601433 -0.00006888 -60.75834803 |
| 6894 | | -0.86601433 0.50001917 -0.00006889 226.73685814 |
| 6895 | | -0.00002522 0.00009410 1.00000000 -0.00548403 |
| 6896 | | Axis 0.00009410 -0.00002521 -1.00000000 |
| 6897 | | Axis point 165.98572536 165.98804691 0.00000000 |
| 6898 | | Rotation angle (degrees) 59.99873156 |
| 6899 | | Shift along axis -0.00594930 |
| 6900 | | |
| 6901 | | |
| 6902 | | > select clear |
| 6903 | | |
| 6904 | | > show #!20 models |
| 6905 | | |
| 6906 | | > hide #!19 models |
| 6907 | | |
| 6908 | | > show #!7 models |
| 6909 | | |
| 6910 | | > show #!8 models |
| 6911 | | |
| 6912 | | > hide #!6 models |
| 6913 | | |
| 6914 | | > hide #!7 models |
| 6915 | | |
| 6916 | | > fitmap #20 inMap #8 |
| 6917 | | |
| 6918 | | Fit molecule 230926_MBCD_HC_10.pdb (#20) to map |
| 6919 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) using 11784 atoms |
| 6920 | | average map value = 0.3701, steps = 36 |
| 6921 | | shifted from previous position = 0.0127 |
| 6922 | | rotated from previous position = 0.00864 degrees |
| 6923 | | atoms outside contour = 1518, contour level = 0.10146 |
| 6924 | | |
| 6925 | | Position of 230926_MBCD_HC_10.pdb (#20) relative to |
| 6926 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) coordinates: |
| 6927 | | Matrix rotation and translation |
| 6928 | | 0.99999999 -0.00009200 0.00006921 0.00468836 |
| 6929 | | 0.00009201 0.99999999 -0.00014029 0.00003958 |
| 6930 | | -0.00006920 0.00014030 0.99999999 -0.00451636 |
| 6931 | | Axis 0.77304295 0.38132757 0.50694565 |
| 6932 | | Axis point 0.00000000 37.06904756 -3.39071167 |
| 6933 | | Rotation angle (degrees) 0.01039808 |
| 6934 | | Shift along axis 0.00134985 |
| 6935 | | |
| 6936 | | |
| 6937 | | > fitmap #20 inMap #8 |
| 6938 | | |
| 6939 | | Fit molecule 230926_MBCD_HC_10.pdb (#20) to map |
| 6940 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) using 11784 atoms |
| 6941 | | average map value = 0.3701, steps = 28 |
| 6942 | | shifted from previous position = 0.0119 |
| 6943 | | rotated from previous position = 0.0125 degrees |
| 6944 | | atoms outside contour = 1523, contour level = 0.10146 |
| 6945 | | |
| 6946 | | Position of 230926_MBCD_HC_10.pdb (#20) relative to |
| 6947 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) coordinates: |
| 6948 | | Matrix rotation and translation |
| 6949 | | 0.99999997 -0.00024861 -0.00000241 0.02770855 |
| 6950 | | 0.00024861 0.99999997 -0.00000542 -0.02703094 |
| 6951 | | 0.00000241 0.00000542 1.00000000 -0.00895565 |
| 6952 | | Axis 0.02177657 -0.00969566 0.99971585 |
| 6953 | | Axis point 109.05784539 112.14894527 0.00000000 |
| 6954 | | Rotation angle (degrees) 0.01424833 |
| 6955 | | Shift along axis -0.00808763 |
| 6956 | | |
| 6957 | | |
| 6958 | | > fitmap #20 inMap #8 |
| 6959 | | |
| 6960 | | Fit molecule 230926_MBCD_HC_10.pdb (#20) to map |
| 6961 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) using 11784 atoms |
| 6962 | | average map value = 0.3701, steps = 28 |
| 6963 | | shifted from previous position = 0.0112 |
| 6964 | | rotated from previous position = 0.00468 degrees |
| 6965 | | atoms outside contour = 1520, contour level = 0.10146 |
| 6966 | | |
| 6967 | | Position of 230926_MBCD_HC_10.pdb (#20) relative to |
| 6968 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) coordinates: |
| 6969 | | Matrix rotation and translation |
| 6970 | | 0.99999998 -0.00017470 -0.00000627 0.01918424 |
| 6971 | | 0.00017470 0.99999998 -0.00003995 -0.01374892 |
| 6972 | | 0.00000627 0.00003994 1.00000000 -0.00206805 |
| 6973 | | Axis 0.22276379 -0.03496507 0.97424522 |
| 6974 | | Axis point 78.16273778 106.31375150 0.00000000 |
| 6975 | | Rotation angle (degrees) 0.01027405 |
| 6976 | | Shift along axis 0.00273950 |
| 6977 | | |
| 6978 | | |
| 6979 | | > fitmap #20 inMap #8 |
| 6980 | | |
| 6981 | | Fit molecule 230926_MBCD_HC_10.pdb (#20) to map |
| 6982 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) using 11784 atoms |
| 6983 | | average map value = 0.3702, steps = 28 |
| 6984 | | shifted from previous position = 0.00791 |
| 6985 | | rotated from previous position = 0.0166 degrees |
| 6986 | | atoms outside contour = 1524, contour level = 0.10146 |
| 6987 | | |
| 6988 | | Position of 230926_MBCD_HC_10.pdb (#20) relative to |
| 6989 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) coordinates: |
| 6990 | | Matrix rotation and translation |
| 6991 | | 1.00000000 0.00005267 -0.00003358 -0.00211674 |
| 6992 | | -0.00005267 0.99999999 0.00013733 -0.00827343 |
| 6993 | | 0.00003358 -0.00013733 0.99999999 0.00643024 |
| 6994 | | Axis -0.91026108 -0.22257260 -0.34912206 |
| 6995 | | Axis point 0.00000000 50.69204616 57.77979788 |
| 6996 | | Rotation angle (degrees) 0.00864413 |
| 6997 | | Shift along axis 0.00152329 |
| 6998 | | |
| 6999 | | |
| 7000 | | > fitmap #20 inMap #8 |
| 7001 | | |
| 7002 | | Fit molecule 230926_MBCD_HC_10.pdb (#20) to map |
| 7003 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) using 11784 atoms |
| 7004 | | average map value = 0.3701, steps = 28 |
| 7005 | | shifted from previous position = 0.0156 |
| 7006 | | rotated from previous position = 0.0198 degrees |
| 7007 | | atoms outside contour = 1520, contour level = 0.10146 |
| 7008 | | |
| 7009 | | Position of 230926_MBCD_HC_10.pdb (#20) relative to |
| 7010 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) coordinates: |
| 7011 | | Matrix rotation and translation |
| 7012 | | 0.99999996 -0.00026850 -0.00004410 0.03292880 |
| 7013 | | 0.00026850 0.99999996 0.00001179 -0.02835113 |
| 7014 | | 0.00004410 -0.00001180 1.00000000 0.00706121 |
| 7015 | | Axis -0.04331710 -0.16191493 0.98585353 |
| 7016 | | Axis point 99.49998612 124.25795737 0.00000000 |
| 7017 | | Rotation angle (degrees) 0.01560490 |
| 7018 | | Shift along axis 0.01012541 |
| 7019 | | |
| 7020 | | |
| 7021 | | > select clear |
| 7022 | | |
| 7023 | | [Repeated 1 time(s)] |
| 7024 | | |
| 7025 | | > select |
| 7026 | | |
| 7027 | | 61858 atoms, 63430 bonds, 36 pseudobonds, 7044 residues, 40 models selected |
| 7028 | | |
| 7029 | | > style sel stick |
| 7030 | | |
| 7031 | | Changed 61858 atom styles |
| 7032 | | |
| 7033 | | > color sel byhetero |
| 7034 | | |
| 7035 | | > select clear |
| 7036 | | |
| 7037 | | > select |
| 7038 | | > ::name="6OU"::name="CBO"::name="CLR"::name="MC3"::name="PTY"::name="Y01" |
| 7039 | | |
| 7040 | | 6060 atoms, 5988 bonds, 198 residues, 4 models selected |
| 7041 | | |
| 7042 | | > color sel gray |
| 7043 | | |
| 7044 | | > color sel byhetero |
| 7045 | | |
| 7046 | | > select clear |
| 7047 | | |
| 7048 | | > volume sdLevel 8 |
| 7049 | | |
| 7050 | | > select clear |
| 7051 | | |
| 7052 | | > volume sdLevel 7 |
| 7053 | | |
| 7054 | | > volume sdLevel 6 |
| 7055 | | |
| 7056 | | > show #!5 models |
| 7057 | | |
| 7058 | | > hide #!5 models |
| 7059 | | |
| 7060 | | > save "C:/Users/OJS/OneDrive - |
| 7061 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 7062 | | |
| 7063 | | > volume #8 level 0.1561 |
| 7064 | | |
| 7065 | | > transparency 80 |
| 7066 | | |
| 7067 | | > select clear |
| 7068 | | |
| 7069 | | > transparency 0 |
| 7070 | | |
| 7071 | | > hide #!20 models |
| 7072 | | |
| 7073 | | > show #!1 models |
| 7074 | | |
| 7075 | | > hide #!1 models |
| 7076 | | |
| 7077 | | > show #!2 models |
| 7078 | | |
| 7079 | | > hide #!8 models |
| 7080 | | |
| 7081 | | > hide #!2 models |
| 7082 | | |
| 7083 | | > show #!2 models |
| 7084 | | |
| 7085 | | > volume #2 level 0.317 |
| 7086 | | |
| 7087 | | > volume sdLevel 7 |
| 7088 | | |
| 7089 | | > volume sdLevel 7.5 |
| 7090 | | |
| 7091 | | > show #!4 models |
| 7092 | | |
| 7093 | | > show #!6 models |
| 7094 | | |
| 7095 | | > show #!8 models |
| 7096 | | |
| 7097 | | > hide #!8 models |
| 7098 | | |
| 7099 | | > hide #!6 models |
| 7100 | | |
| 7101 | | > hide #!4 models |
| 7102 | | |
| 7103 | | > hide #!2 models |
| 7104 | | |
| 7105 | | > show #!2 models |
| 7106 | | |
| 7107 | | > show #!8 models |
| 7108 | | |
| 7109 | | > hide #!2 models |
| 7110 | | |
| 7111 | | > show #!2 models |
| 7112 | | |
| 7113 | | > hide #!2 models |
| 7114 | | |
| 7115 | | > show #!2 models |
| 7116 | | |
| 7117 | | > hide #!2 models |
| 7118 | | |
| 7119 | | > volume #8 level 0.1591 |
| 7120 | | |
| 7121 | | > show #!2 models |
| 7122 | | |
| 7123 | | > hide #!2 models |
| 7124 | | |
| 7125 | | > hide #!8 models |
| 7126 | | |
| 7127 | | > show #!9 models |
| 7128 | | |
| 7129 | | > show #!10 models |
| 7130 | | |
| 7131 | | > hide #!9 models |
| 7132 | | |
| 7133 | | > show #!2 models |
| 7134 | | |
| 7135 | | > hide #!2 models |
| 7136 | | |
| 7137 | | > hide #!10 models |
| 7138 | | |
| 7139 | | > show #!2 models |
| 7140 | | |
| 7141 | | > hide #!2 models |
| 7142 | | |
| 7143 | | > show #!17 models |
| 7144 | | |
| 7145 | | > show #!18 models |
| 7146 | | |
| 7147 | | > select |
| 7148 | | |
| 7149 | | 61858 atoms, 63430 bonds, 36 pseudobonds, 7044 residues, 40 models selected |
| 7150 | | |
| 7151 | | > ui tool show "Selection Inspector" |
| 7152 | | |
| 7153 | | > setattr =sel p display true |
| 7154 | | |
| 7155 | | Assigning display attribute to 36 items |
| 7156 | | |
| 7157 | | > setattr =sel p display false |
| 7158 | | |
| 7159 | | Assigning display attribute to 36 items |
| 7160 | | |
| 7161 | | > size =sel stickRadius 0.3 |
| 7162 | | |
| 7163 | | Changed 63430 bond radii |
| 7164 | | |
| 7165 | | > ribbon style thickness 0.6 |
| 7166 | | |
| 7167 | | > select clear |
| 7168 | | |
| 7169 | | > select add #17 |
| 7170 | | |
| 7171 | | 11430 atoms, 11646 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 7172 | | |
| 7173 | | > select clear |
| 7174 | | |
| 7175 | | > show #!19 models |
| 7176 | | |
| 7177 | | > ui mousemode right "rotate selected models" |
| 7178 | | |
| 7179 | | > select add #19 |
| 7180 | | |
| 7181 | | 8634 atoms, 8916 bonds, 6 pseudobonds, 1020 residues, 2 models selected |
| 7182 | | |
| 7183 | | > view matrix models |
| 7184 | | > #19,0.59572,0.80024,-0.068844,-112.04,-0.77952,0.55538,-0.28964,192.63,-0.19355,0.22621,0.95466,-60.704 |
| 7185 | | |
| 7186 | | > view matrix models |
| 7187 | | > #19,0.28175,0.95556,0.086727,-110.92,-0.9571,0.27354,0.095546,206.48,0.067577,-0.10993,0.99164,-54.241 |
| 7188 | | |
| 7189 | | > view matrix models |
| 7190 | | > #19,0.088046,0.99296,0.0792,-83.757,-0.99172,0.094838,-0.086542,271.39,-0.093444,-0.070924,0.9931,-34.227 |
| 7191 | | |
| 7192 | | > view matrix models |
| 7193 | | > #19,-0.011227,0.99863,0.051133,-63.675,-0.9996,-0.01253,0.025241,272.41,0.025847,-0.05083,0.99837,-58.215 |
| 7194 | | |
| 7195 | | > fitmap #19 inMap #8 |
| 7196 | | |
| 7197 | | Fit molecule 230926_CBX_HC_181.pdb (#19) to map |
| 7198 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) using 8634 atoms |
| 7199 | | average map value = 0.2334, steps = 68 |
| 7200 | | shifted from previous position = 0.422 |
| 7201 | | rotated from previous position = 4.31 degrees |
| 7202 | | atoms outside contour = 4013, contour level = 0.15911 |
| 7203 | | |
| 7204 | | Position of 230926_CBX_HC_181.pdb (#19) relative to |
| 7205 | | MBCD_P41_J50_013_volume_map_sharp.mrc (#8) coordinates: |
| 7206 | | Matrix rotation and translation |
| 7207 | | -0.06082116 0.99814868 0.00000076 -47.06398438 |
| 7208 | | -0.99814868 -0.06082116 0.00009026 284.30656281 |
| 7209 | | 0.00009014 0.00000473 1.00000000 -62.30576461 |
| 7210 | | Axis -0.00004284 -0.00004478 -1.00000000 |
| 7211 | | Axis point 110.22563249 164.29516133 0.00000000 |
| 7212 | | Rotation angle (degrees) 93.48694778 |
| 7213 | | Shift along axis 62.29505076 |
| 7214 | | |
| 7215 | | |
| 7216 | | > show #!20 models |
| 7217 | | |
| 7218 | | > select clear |
| 7219 | | |
| 7220 | | [Repeated 1 time(s)] |
| 7221 | | |
| 7222 | | > select :200 |
| 7223 | | |
| 7224 | | 288 atoms, 252 bonds, 36 residues, 6 models selected |
| 7225 | | |
| 7226 | | > ui tool show "Selection Inspector" |
| 7227 | | |
| 7228 | | > setattr sel r ss_type 0 |
| 7229 | | |
| 7230 | | Assigning ss_type attribute to 36 items |
| 7231 | | |
| 7232 | | > undo |
| 7233 | | |
| 7234 | | > hide #!17 models |
| 7235 | | |
| 7236 | | > hide #!18 models |
| 7237 | | |
| 7238 | | > hide #!20 models |
| 7239 | | |
| 7240 | | > select :196-200 |
| 7241 | | |
| 7242 | | 1440 atoms, 1440 bonds, 180 residues, 6 models selected |
| 7243 | | |
| 7244 | | > ui tool show "Selection Inspector" |
| 7245 | | |
| 7246 | | > setattr sel r ss_type 0 |
| 7247 | | |
| 7248 | | Assigning ss_type attribute to 180 items |
| 7249 | | |
| 7250 | | > setattr sel r ss_type 2 |
| 7251 | | |
| 7252 | | Assigning ss_type attribute to 180 items |
| 7253 | | |
| 7254 | | > select clear |
| 7255 | | |
| 7256 | | > show #!18 models |
| 7257 | | |
| 7258 | | > hide #!18 models |
| 7259 | | |
| 7260 | | > show #!18 models |
| 7261 | | |
| 7262 | | > select #19/D:55 |
| 7263 | | |
| 7264 | | 10 atoms, 10 bonds, 1 residue, 1 model selected |
| 7265 | | |
| 7266 | | > select #18/D:54 |
| 7267 | | |
| 7268 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 7269 | | |
| 7270 | | > select #19/D:54 |
| 7271 | | |
| 7272 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 7273 | | |
| 7274 | | > select :52-55 |
| 7275 | | |
| 7276 | | 1332 atoms, 1350 bonds, 144 residues, 6 models selected |
| 7277 | | |
| 7278 | | > ui tool show "Selection Inspector" |
| 7279 | | |
| 7280 | | > setattr sel r ss_type 0 |
| 7281 | | |
| 7282 | | Assigning ss_type attribute to 144 items |
| 7283 | | |
| 7284 | | > select :200 |
| 7285 | | |
| 7286 | | 288 atoms, 252 bonds, 36 residues, 6 models selected |
| 7287 | | |
| 7288 | | > ui tool show "Selection Inspector" |
| 7289 | | |
| 7290 | | > setattr sel r ss_type 0 |
| 7291 | | |
| 7292 | | Assigning ss_type attribute to 36 items |
| 7293 | | |
| 7294 | | > select clear |
| 7295 | | |
| 7296 | | > morph #18,19 |
| 7297 | | |
| 7298 | | Computed 51 frame morph #21 |
| 7299 | | |
| 7300 | | > coordset #21 1,51 |
| 7301 | | |
| 7302 | | > view orient |
| 7303 | | |
| 7304 | | > turn x 90 |
| 7305 | | |
| 7306 | | > select /b,c,e,f |
| 7307 | | |
| 7308 | | 46600 atoms, 47820 bonds, 28 pseudobonds, 5344 residues, 14 models selected |
| 7309 | | |
| 7310 | | > hide sel ribbons |
| 7311 | | |
| 7312 | | > select clear |
| 7313 | | |
| 7314 | | [Repeated 1 time(s)] |
| 7315 | | |
| 7316 | | > select /b,c,e,f |
| 7317 | | |
| 7318 | | 46600 atoms, 47820 bonds, 28 pseudobonds, 5344 residues, 14 models selected |
| 7319 | | |
| 7320 | | > show sel ribbons |
| 7321 | | |
| 7322 | | > select clear |
| 7323 | | |
| 7324 | | > select /b,c,e,f |
| 7325 | | |
| 7326 | | 46600 atoms, 47820 bonds, 28 pseudobonds, 5344 residues, 14 models selected |
| 7327 | | |
| 7328 | | > hide sel ribbons |
| 7329 | | |
| 7330 | | > view orient |
| 7331 | | |
| 7332 | | > turn x 90 |
| 7333 | | |
| 7334 | | > turn y 60 |
| 7335 | | |
| 7336 | | > select add #21 |
| 7337 | | |
| 7338 | | 49368 atoms, 50676 bonds, 30 pseudobonds, 5680 residues, 14 models selected |
| 7339 | | |
| 7340 | | > select add #20 |
| 7341 | | |
| 7342 | | 53296 atoms, 54698 bonds, 32 pseudobonds, 6092 residues, 14 models selected |
| 7343 | | |
| 7344 | | > select add #19 |
| 7345 | | |
| 7346 | | 56174 atoms, 57670 bonds, 34 pseudobonds, 6432 residues, 14 models selected |
| 7347 | | |
| 7348 | | > select add #18 |
| 7349 | | |
| 7350 | | 59974 atoms, 61554 bonds, 36 pseudobonds, 6844 residues, 14 models selected |
| 7351 | | |
| 7352 | | > select add #17 |
| 7353 | | |
| 7354 | | 63784 atoms, 65436 bonds, 38 pseudobonds, 7266 residues, 14 models selected |
| 7355 | | |
| 7356 | | > select subtract #18 |
| 7357 | | |
| 7358 | | 52384 atoms, 53784 bonds, 32 pseudobonds, 6030 residues, 12 models selected |
| 7359 | | |
| 7360 | | > select subtract #20 |
| 7361 | | |
| 7362 | | 40600 atoms, 41718 bonds, 26 pseudobonds, 4794 residues, 10 models selected |
| 7363 | | |
| 7364 | | > select subtract #21 |
| 7365 | | |
| 7366 | | 32296 atoms, 33150 bonds, 20 pseudobonds, 3786 residues, 8 models selected |
| 7367 | | |
| 7368 | | > select subtract #17 |
| 7369 | | |
| 7370 | | 20866 atoms, 21504 bonds, 14 pseudobonds, 2520 residues, 6 models selected |
| 7371 | | |
| 7372 | | > select add #12 |
| 7373 | | |
| 7374 | | 24082 atoms, 24812 bonds, 16 pseudobonds, 2916 residues, 6 models selected |
| 7375 | | |
| 7376 | | > select add #11 |
| 7377 | | |
| 7378 | | 27244 atoms, 28066 bonds, 18 pseudobonds, 3306 residues, 6 models selected |
| 7379 | | |
| 7380 | | > select subtract #11 |
| 7381 | | |
| 7382 | | 18282 atoms, 18840 bonds, 12 pseudobonds, 2208 residues, 4 models selected |
| 7383 | | |
| 7384 | | > select subtract #12 |
| 7385 | | |
| 7386 | | 8634 atoms, 8916 bonds, 6 pseudobonds, 1020 residues, 2 models selected |
| 7387 | | |
| 7388 | | > select subtract #19 |
| 7389 | | |
| 7390 | | Nothing selected |
| 7391 | | |
| 7392 | | > hide #!21 models |
| 7393 | | |
| 7394 | | > show #!19 models |
| 7395 | | |
| 7396 | | > show #!18 models |
| 7397 | | |
| 7398 | | > hide #!19 models |
| 7399 | | |
| 7400 | | > hide #!18 models |
| 7401 | | |
| 7402 | | > show #!21 models |
| 7403 | | |
| 7404 | | > hide #!21 models |
| 7405 | | |
| 7406 | | > show #!19 models |
| 7407 | | |
| 7408 | | > show #!18 models |
| 7409 | | |
| 7410 | | > show #!3 models |
| 7411 | | |
| 7412 | | > hide #!3 models |
| 7413 | | |
| 7414 | | > show #!4 models |
| 7415 | | |
| 7416 | | > transparency 30 |
| 7417 | | |
| 7418 | | > transparency 50 |
| 7419 | | |
| 7420 | | > hide #!4 models |
| 7421 | | |
| 7422 | | > show #!4 models |
| 7423 | | |
| 7424 | | > hide #!4 models |
| 7425 | | |
| 7426 | | > show #!3 models |
| 7427 | | |
| 7428 | | > volume #4 level 0.2869 |
| 7429 | | |
| 7430 | | > volume #3 level 0.1222 |
| 7431 | | |
| 7432 | | > hide #!4 models |
| 7433 | | |
| 7434 | | > transparency 80 |
| 7435 | | |
| 7436 | | > hide #!18 models |
| 7437 | | |
| 7438 | | > show #!18 models |
| 7439 | | |
| 7440 | | > hide #!19 models |
| 7441 | | |
| 7442 | | > select |
| 7443 | | |
| 7444 | | 70162 atoms, 71998 bonds, 42 pseudobonds, 8052 residues, 42 models selected |
| 7445 | | |
| 7446 | | > show sel ribbons |
| 7447 | | |
| 7448 | | > select clear |
| 7449 | | |
| 7450 | | > hide #!18 models |
| 7451 | | |
| 7452 | | > show #!19 models |
| 7453 | | |
| 7454 | | > hide #!3 models |
| 7455 | | |
| 7456 | | > show #!5 models |
| 7457 | | |
| 7458 | | > hide #!5 models |
| 7459 | | |
| 7460 | | > show #!6 models |
| 7461 | | |
| 7462 | | > show #!4 models |
| 7463 | | |
| 7464 | | > hide #!4 models |
| 7465 | | |
| 7466 | | > show #!18 models |
| 7467 | | |
| 7468 | | > hide #!18 models |
| 7469 | | |
| 7470 | | > hide #!19 models |
| 7471 | | |
| 7472 | | > hide #!6 models |
| 7473 | | |
| 7474 | | > show #!19 models |
| 7475 | | |
| 7476 | | > mlp #!19 |
| 7477 | | |
| 7478 | | Map values for surface "230926_CBX_HC_181.pdb_A SES surface": minimum -27.57, |
| 7479 | | mean 0.8045, maximum 24.47 |
| 7480 | | Map values for surface "230926_CBX_HC_181.pdb_B SES surface": minimum -26.7, |
| 7481 | | mean 0.8385, maximum 24.42 |
| 7482 | | Map values for surface "230926_CBX_HC_181.pdb_C SES surface": minimum -28.15, |
| 7483 | | mean 0.8718, maximum 24.27 |
| 7484 | | Map values for surface "230926_CBX_HC_181.pdb_D SES surface": minimum -27.92, |
| 7485 | | mean 0.8499, maximum 24.31 |
| 7486 | | Map values for surface "230926_CBX_HC_181.pdb_E SES surface": minimum -27.7, |
| 7487 | | mean 0.8051, maximum 24.33 |
| 7488 | | Map values for surface "230926_CBX_HC_181.pdb_F SES surface": minimum -28.95, |
| 7489 | | mean 0.8537, maximum 24.25 |
| 7490 | | To also show corresponding color key, enter the above mlp command and add key |
| 7491 | | true |
| 7492 | | |
| 7493 | | > hide #!19 models |
| 7494 | | |
| 7495 | | > show #!18 models |
| 7496 | | |
| 7497 | | > mlp #!18 |
| 7498 | | |
| 7499 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 7500 | | mean 0.2399, maximum 23.77 |
| 7501 | | Map values for surface "230904_Chol_HC_150.pdb_B SES surface": minimum -28.02, |
| 7502 | | mean 0.1571, maximum 25.31 |
| 7503 | | Map values for surface "230904_Chol_HC_150.pdb_C SES surface": minimum -27.97, |
| 7504 | | mean 0.1452, maximum 24.75 |
| 7505 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.84, |
| 7506 | | mean 0.223, maximum 24.9 |
| 7507 | | Map values for surface "230904_Chol_HC_150.pdb_E SES surface": minimum -27.89, |
| 7508 | | mean 0.1406, maximum 24.79 |
| 7509 | | Map values for surface "230904_Chol_HC_150.pdb_F SES surface": minimum -27.69, |
| 7510 | | mean 0.1485, maximum 25.26 |
| 7511 | | To also show corresponding color key, enter the above mlp command and add key |
| 7512 | | true |
| 7513 | | |
| 7514 | | > show #!19 models |
| 7515 | | |
| 7516 | | > hide #!18 models |
| 7517 | | |
| 7518 | | > hide #!19 models |
| 7519 | | |
| 7520 | | > show #!19 models |
| 7521 | | |
| 7522 | | > show #!18 models |
| 7523 | | |
| 7524 | | > hide #!18 models |
| 7525 | | |
| 7526 | | > show #!18 models |
| 7527 | | |
| 7528 | | > hide #!18 models |
| 7529 | | |
| 7530 | | > show #!18 models |
| 7531 | | |
| 7532 | | > hide #!19 models |
| 7533 | | |
| 7534 | | > transparency 50 |
| 7535 | | |
| 7536 | | > transparency 10 |
| 7537 | | |
| 7538 | | > transparency 0 |
| 7539 | | |
| 7540 | | > select clear |
| 7541 | | |
| 7542 | | > hide #!18 models |
| 7543 | | |
| 7544 | | > show #!19 models |
| 7545 | | |
| 7546 | | > show #!18 models |
| 7547 | | |
| 7548 | | > hide #!18 models |
| 7549 | | |
| 7550 | | > hide #!19 models |
| 7551 | | |
| 7552 | | > show #!19 models |
| 7553 | | |
| 7554 | | > show #!18 models |
| 7555 | | |
| 7556 | | > hide #!19 models |
| 7557 | | |
| 7558 | | > show #!19 models |
| 7559 | | |
| 7560 | | > hide #!18 models |
| 7561 | | |
| 7562 | | > hide #!19 models |
| 7563 | | |
| 7564 | | > show #!17 models |
| 7565 | | |
| 7566 | | > show #!18 models |
| 7567 | | |
| 7568 | | > hide #!17-18 surfaces |
| 7569 | | |
| 7570 | | > close #21 |
| 7571 | | |
| 7572 | | > morph #17,18 |
| 7573 | | |
| 7574 | | Computed 51 frame morph #21 |
| 7575 | | |
| 7576 | | > coordset #21 1,51 |
| 7577 | | |
| 7578 | | > show #!17 models |
| 7579 | | |
| 7580 | | > show #!18 models |
| 7581 | | |
| 7582 | | > close #21 |
| 7583 | | |
| 7584 | | > morph #17,18 |
| 7585 | | |
| 7586 | | Computed 51 frame morph #21 |
| 7587 | | |
| 7588 | | > coordset #21 1,51 |
| 7589 | | |
| 7590 | | > show #!18 models |
| 7591 | | |
| 7592 | | > hide #!21 models |
| 7593 | | |
| 7594 | | > show #!4 models |
| 7595 | | |
| 7596 | | > show #!21 models |
| 7597 | | |
| 7598 | | > hide #!18 models |
| 7599 | | |
| 7600 | | > show #!18 models |
| 7601 | | |
| 7602 | | > hide #!4 models |
| 7603 | | |
| 7604 | | > hide #!18 models |
| 7605 | | |
| 7606 | | > show #!18 models |
| 7607 | | |
| 7608 | | > hide #!18 models |
| 7609 | | |
| 7610 | | > select #21/b,c,e,f |
| 7611 | | |
| 7612 | | 6388 atoms, 6572 bonds, 4 pseudobonds, 788 residues, 2 models selected |
| 7613 | | |
| 7614 | | > hide sel ribbons |
| 7615 | | |
| 7616 | | > select #21/b,c,e,f |
| 7617 | | |
| 7618 | | 6388 atoms, 6572 bonds, 4 pseudobonds, 788 residues, 2 models selected |
| 7619 | | |
| 7620 | | > show sel ribbons |
| 7621 | | |
| 7622 | | > select clear |
| 7623 | | |
| 7624 | | > select #21/b,c,e,f |
| 7625 | | |
| 7626 | | 6388 atoms, 6572 bonds, 4 pseudobonds, 788 residues, 2 models selected |
| 7627 | | |
| 7628 | | > hide sel ribbons |
| 7629 | | |
| 7630 | | > select #21/a |
| 7631 | | |
| 7632 | | 1597 atoms, 1643 bonds, 1 pseudobond, 197 residues, 2 models selected |
| 7633 | | |
| 7634 | | > mlp sel |
| 7635 | | |
| 7636 | | Map values for surface "Morph - 230809_PIP2_HC_85.pdb_A SES surface": minimum |
| 7637 | | -28.07, mean 0.1466, maximum 23.33 |
| 7638 | | To also show corresponding color key, enter the above mlp command and add key |
| 7639 | | true |
| 7640 | | |
| 7641 | | > mlp sel |
| 7642 | | |
| 7643 | | Map values for surface "Morph - 230809_PIP2_HC_85.pdb_A SES surface": minimum |
| 7644 | | -27.21, mean 0.05247, maximum 24.21 |
| 7645 | | To also show corresponding color key, enter the above mlp command and add key |
| 7646 | | true |
| 7647 | | |
| 7648 | | > hide sel surfaces |
| 7649 | | |
| 7650 | | > coulombic sel |
| 7651 | | |
| 7652 | | The following heavy (non-hydrogen) atoms are missing, which may result in |
| 7653 | | inaccurate electrostatics: |
| 7654 | | Morph - 230809_PIP2_HC_85.pdb #21/A ASN 55 OD1 |
| 7655 | | Morph - 230809_PIP2_HC_85.pdb #21/A ASN 55 ND2 |
| 7656 | | |
| 7657 | | Adding H-bond-preserving hydrogens to trajectories not supported. |
| 7658 | | |
| 7659 | | > mlp sel |
| 7660 | | |
| 7661 | | Map values for surface "Morph - 230809_PIP2_HC_85.pdb_A SES surface": minimum |
| 7662 | | -27.38, mean 0.06372, maximum 23.69 |
| 7663 | | To also show corresponding color key, enter the above mlp command and add key |
| 7664 | | true |
| 7665 | | |
| 7666 | | > mlp sel |
| 7667 | | |
| 7668 | | Map values for surface "Morph - 230809_PIP2_HC_85.pdb_A SES surface": minimum |
| 7669 | | -27.38, mean 0.06372, maximum 23.69 |
| 7670 | | To also show corresponding color key, enter the above mlp command and add key |
| 7671 | | true |
| 7672 | | |
| 7673 | | > show #!19 models |
| 7674 | | |
| 7675 | | > hide #!19 models |
| 7676 | | |
| 7677 | | > show #!18 models |
| 7678 | | |
| 7679 | | > hide #!18 models |
| 7680 | | |
| 7681 | | > show #!18 models |
| 7682 | | |
| 7683 | | > hide #!18 models |
| 7684 | | |
| 7685 | | > hide #!21 models |
| 7686 | | |
| 7687 | | > show #!21 models |
| 7688 | | |
| 7689 | | > hide #!21 models |
| 7690 | | |
| 7691 | | > show #!18 models |
| 7692 | | |
| 7693 | | > mlp #!18 |
| 7694 | | |
| 7695 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 7696 | | mean 0.2399, maximum 23.77 |
| 7697 | | Map values for surface "230904_Chol_HC_150.pdb_B SES surface": minimum -28.02, |
| 7698 | | mean 0.1571, maximum 25.31 |
| 7699 | | Map values for surface "230904_Chol_HC_150.pdb_C SES surface": minimum -27.97, |
| 7700 | | mean 0.1452, maximum 24.75 |
| 7701 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.84, |
| 7702 | | mean 0.223, maximum 24.9 |
| 7703 | | Map values for surface "230904_Chol_HC_150.pdb_E SES surface": minimum -27.89, |
| 7704 | | mean 0.1406, maximum 24.79 |
| 7705 | | Map values for surface "230904_Chol_HC_150.pdb_F SES surface": minimum -27.69, |
| 7706 | | mean 0.1485, maximum 25.26 |
| 7707 | | To also show corresponding color key, enter the above mlp command and add key |
| 7708 | | true |
| 7709 | | |
| 7710 | | > show #!17 models |
| 7711 | | |
| 7712 | | > mlp #!17-18 |
| 7713 | | |
| 7714 | | Map values for surface "230809_PIP2_HC_85.pdb_A SES surface": minimum -27.38, |
| 7715 | | mean 0.01814, maximum 23.69 |
| 7716 | | Map values for surface "230809_PIP2_HC_85.pdb_B SES surface": minimum -27.3, |
| 7717 | | mean 0.0472, maximum 25.97 |
| 7718 | | Map values for surface "230809_PIP2_HC_85.pdb_C SES surface": minimum -28.05, |
| 7719 | | mean 0.03183, maximum 23.54 |
| 7720 | | Map values for surface "230809_PIP2_HC_85.pdb_D SES surface": minimum -28, |
| 7721 | | mean 0.06321, maximum 26.19 |
| 7722 | | Map values for surface "230809_PIP2_HC_85.pdb_E SES surface": minimum -27.44, |
| 7723 | | mean 0.08273, maximum 23.98 |
| 7724 | | Map values for surface "230809_PIP2_HC_85.pdb_F SES surface": minimum -27.61, |
| 7725 | | mean 0.03048, maximum 23.45 |
| 7726 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 7727 | | mean 0.2399, maximum 23.77 |
| 7728 | | Map values for surface "230904_Chol_HC_150.pdb_B SES surface": minimum -28.02, |
| 7729 | | mean 0.1571, maximum 25.31 |
| 7730 | | Map values for surface "230904_Chol_HC_150.pdb_C SES surface": minimum -27.97, |
| 7731 | | mean 0.1452, maximum 24.75 |
| 7732 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.84, |
| 7733 | | mean 0.223, maximum 24.9 |
| 7734 | | Map values for surface "230904_Chol_HC_150.pdb_E SES surface": minimum -27.89, |
| 7735 | | mean 0.1406, maximum 24.79 |
| 7736 | | Map values for surface "230904_Chol_HC_150.pdb_F SES surface": minimum -27.69, |
| 7737 | | mean 0.1485, maximum 25.26 |
| 7738 | | To also show corresponding color key, enter the above mlp command and add key |
| 7739 | | true |
| 7740 | | |
| 7741 | | > hide #!18 models |
| 7742 | | |
| 7743 | | > show #!18 models |
| 7744 | | |
| 7745 | | > hide #!18 models |
| 7746 | | |
| 7747 | | > show #!18 models |
| 7748 | | |
| 7749 | | > hide #!18 models |
| 7750 | | |
| 7751 | | > show #!18 models |
| 7752 | | |
| 7753 | | > hide #!18 models |
| 7754 | | |
| 7755 | | > show #!18 models |
| 7756 | | |
| 7757 | | > hide #!18 models |
| 7758 | | |
| 7759 | | > show #!18 models |
| 7760 | | |
| 7761 | | > hide #!18 models |
| 7762 | | |
| 7763 | | > show #!18 models |
| 7764 | | |
| 7765 | | > hide #!18 models |
| 7766 | | |
| 7767 | | > show #!18 models |
| 7768 | | |
| 7769 | | > hide #!18 models |
| 7770 | | |
| 7771 | | > show #!18 models |
| 7772 | | |
| 7773 | | > hide #!18 models |
| 7774 | | |
| 7775 | | > hide #!17 models |
| 7776 | | |
| 7777 | | > morph #17,18,19 |
| 7778 | | |
| 7779 | | Computed 101 frame morph #22 |
| 7780 | | |
| 7781 | | > coordset #22 1,101 |
| 7782 | | |
| 7783 | | > close #21 |
| 7784 | | |
| 7785 | | > morph #18,20 |
| 7786 | | |
| 7787 | | Computed 51 frame morph #21 |
| 7788 | | |
| 7789 | | > coordset #21 1,51 |
| 7790 | | |
| 7791 | | > close #22 |
| 7792 | | |
| 7793 | | > morph #17,20 |
| 7794 | | |
| 7795 | | Computed 51 frame morph #22 |
| 7796 | | |
| 7797 | | > coordset #22 1,51 |
| 7798 | | |
| 7799 | | > hide #!21 models |
| 7800 | | |
| 7801 | | > hide #!22 models |
| 7802 | | |
| 7803 | | > show #!17 models |
| 7804 | | |
| 7805 | | > show #!20 models |
| 7806 | | |
| 7807 | | > hide #!17 models |
| 7808 | | |
| 7809 | | > mlp #!20 |
| 7810 | | |
| 7811 | | Map values for surface "230926_MBCD_HC_10.pdb_A SES surface": minimum -28.57, |
| 7812 | | mean -0.03631, maximum 25.41 |
| 7813 | | Map values for surface "230926_MBCD_HC_10.pdb_B SES surface": minimum -28, |
| 7814 | | mean -0.02772, maximum 25.92 |
| 7815 | | Map values for surface "230926_MBCD_HC_10.pdb_C SES surface": minimum -28.3, |
| 7816 | | mean -0.1042, maximum 25.64 |
| 7817 | | Map values for surface "230926_MBCD_HC_10.pdb_D SES surface": minimum -28.28, |
| 7818 | | mean -0.05149, maximum 25.19 |
| 7819 | | Map values for surface "230926_MBCD_HC_10.pdb_E SES surface": minimum -27.35, |
| 7820 | | mean -0.03333, maximum 24.83 |
| 7821 | | Map values for surface "230926_MBCD_HC_10.pdb_F SES surface": minimum -27.13, |
| 7822 | | mean -0.07312, maximum 24.98 |
| 7823 | | To also show corresponding color key, enter the above mlp command and add key |
| 7824 | | true |
| 7825 | | |
| 7826 | | > show #!17 models |
| 7827 | | |
| 7828 | | > hide #!17 models |
| 7829 | | |
| 7830 | | > show #!17 models |
| 7831 | | |
| 7832 | | > hide #!17 models |
| 7833 | | |
| 7834 | | > show #!17 models |
| 7835 | | |
| 7836 | | > hide #!17 models |
| 7837 | | |
| 7838 | | > show #!17 models |
| 7839 | | |
| 7840 | | > hide #!17 models |
| 7841 | | |
| 7842 | | > show #!17 models |
| 7843 | | |
| 7844 | | > hide #!17 models |
| 7845 | | |
| 7846 | | > show #!17 models |
| 7847 | | |
| 7848 | | > hide #!17 models |
| 7849 | | |
| 7850 | | > show #!17 models |
| 7851 | | |
| 7852 | | > hide #!17 models |
| 7853 | | |
| 7854 | | > show #!17 models |
| 7855 | | |
| 7856 | | > hide #!17 models |
| 7857 | | |
| 7858 | | > close #22 |
| 7859 | | |
| 7860 | | > close #21 |
| 7861 | | |
| 7862 | | > hide #!20 models |
| 7863 | | |
| 7864 | | > morph #18,20 |
| 7865 | | |
| 7866 | | Computed 51 frame morph #21 |
| 7867 | | |
| 7868 | | > coordset #21 1,51 |
| 7869 | | |
| 7870 | | > morph #18,20,17 |
| 7871 | | |
| 7872 | | Computed 101 frame morph #22 |
| 7873 | | |
| 7874 | | > coordset #22 1,101 |
| 7875 | | |
| 7876 | | > close #21 |
| 7877 | | |
| 7878 | | > save "C:/Users/OJS/OneDrive - |
| 7879 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 7880 | | |
| 7881 | | ——— End of log from Fri Oct 6 04:37:41 2023 ——— |
| 7882 | | |
| 7883 | | opened ChimeraX session |
| 7884 | | |
| 7885 | | > close #22 |
| 7886 | | |
| 7887 | | > show #!1 models |
| 7888 | | |
| 7889 | | > show #!2 models |
| 7890 | | |
| 7891 | | > hide #!2 models |
| 7892 | | |
| 7893 | | > hide #!1 models |
| 7894 | | |
| 7895 | | > open |
| 7896 | | > C:/Users/OJS/Desktop/Phenix/230320_Cx43_WT_POPE_PIP2/RealSpaceRefine_90/231006_From86_PIO_real_space_refined_090.pdb |
| 7897 | | |
| 7898 | | Chain information for 231006_From86_PIO_real_space_refined_090.pdb #21 |
| 7899 | | --- |
| 7900 | | Chain | Description |
| 7901 | | A B C D E F | No description available |
| 7902 | | |
| 7903 | | |
| 7904 | | > hide #!21 atoms |
| 7905 | | |
| 7906 | | > show #!21 cartoons |
| 7907 | | |
| 7908 | | > color #21 #ff557fff |
| 7909 | | |
| 7910 | | > select ::name="PIO" |
| 7911 | | |
| 7912 | | 282 atoms, 282 bonds, 6 residues, 1 model selected |
| 7913 | | |
| 7914 | | > show sel atoms |
| 7915 | | |
| 7916 | | > show #!1 models |
| 7917 | | |
| 7918 | | > hide #!1 models |
| 7919 | | |
| 7920 | | > show #!1 models |
| 7921 | | |
| 7922 | | > show #!2 models |
| 7923 | | |
| 7924 | | > hide #!2 models |
| 7925 | | |
| 7926 | | > show #!2 models |
| 7927 | | |
| 7928 | | > show #!3 models |
| 7929 | | |
| 7930 | | > hide #!3 models |
| 7931 | | |
| 7932 | | > select clear |
| 7933 | | |
| 7934 | | > hide #!2 models |
| 7935 | | |
| 7936 | | > hide #!1 models |
| 7937 | | |
| 7938 | | > show #!2 models |
| 7939 | | |
| 7940 | | > transparency 30 |
| 7941 | | |
| 7942 | | > select add #21 |
| 7943 | | |
| 7944 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 7945 | | |
| 7946 | | > ui mousemode right "translate selected models" |
| 7947 | | |
| 7948 | | > view matrix models #21,1,0,0,-38.016,0,1,0,-20.413,0,0,1,-99.273 |
| 7949 | | |
| 7950 | | > view matrix models #21,1,0,0,-63.406,0,1,0,-42.853,0,0,1,-124.46 |
| 7951 | | |
| 7952 | | > view matrix models #21,1,0,0,-88.421,0,1,0,-69.632,0,0,1,-109.58 |
| 7953 | | |
| 7954 | | > view matrix models #21,1,0,0,-57.048,0,1,0,-55.647,0,0,1,-83.181 |
| 7955 | | |
| 7956 | | > view matrix models #21,1,0,0,-66.548,0,1,0,-60.717,0,0,1,-79.857 |
| 7957 | | |
| 7958 | | > ui tool show "Fit in Map" |
| 7959 | | |
| 7960 | | > fitmap #21 inMap #1 |
| 7961 | | |
| 7962 | | Fit molecule 231006_From86_PIO_real_space_refined_090.pdb (#21) to map |
| 7963 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 7964 | | average map value = 0.1004, steps = 132 |
| 7965 | | shifted from previous position = 6.49 |
| 7966 | | rotated from previous position = 12.1 degrees |
| 7967 | | atoms outside contour = 7089, contour level = 0.097151 |
| 7968 | | |
| 7969 | | Position of 231006_From86_PIO_real_space_refined_090.pdb (#21) relative to |
| 7970 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 7971 | | Matrix rotation and translation |
| 7972 | | 0.51764976 0.85559262 -0.00000026 -63.30191413 |
| 7973 | | -0.85559262 0.51764976 -0.00000394 226.91542539 |
| 7974 | | -0.00000324 0.00000227 1.00000001 -5.24153078 |
| 7975 | | Axis 0.00000363 0.00000174 -1.00000000 |
| 7976 | | Axis point 169.60025893 169.60017669 0.00000000 |
| 7977 | | Rotation angle (degrees) 58.82526657 |
| 7978 | | Shift along axis 5.24169647 |
| 7979 | | |
| 7980 | | |
| 7981 | | > view matrix models |
| 7982 | | > #21,0.97778,-0.20963,1.3479e-05,-22.486,0.20963,0.97778,4.6066e-05,-92.668,-2.2837e-05,-4.2217e-05,1,-69.749 |
| 7983 | | |
| 7984 | | > fitmap #21 inMap #1 |
| 7985 | | |
| 7986 | | Fit molecule 231006_From86_PIO_real_space_refined_090.pdb (#21) to map |
| 7987 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 7988 | | average map value = 0.1776, steps = 68 |
| 7989 | | shifted from previous position = 1.6 |
| 7990 | | rotated from previous position = 1.21 degrees |
| 7991 | | atoms outside contour = 2082, contour level = 0.097151 |
| 7992 | | |
| 7993 | | Position of 231006_From86_PIO_real_space_refined_090.pdb (#21) relative to |
| 7994 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 7995 | | Matrix rotation and translation |
| 7996 | | 0.49950197 0.86631275 -0.00006353 -62.03103824 |
| 7997 | | -0.86631275 0.49950197 0.00004222 231.81045494 |
| 7998 | | 0.00006830 0.00003396 1.00000000 -0.01172360 |
| 7999 | | Axis -0.00000477 -0.00007609 -1.00000000 |
| 8000 | | Axis point 169.60500377 169.59003413 0.00000000 |
| 8001 | | Rotation angle (degrees) 60.03294397 |
| 8002 | | Shift along axis -0.00561937 |
| 8003 | | |
| 8004 | | |
| 8005 | | > select clear |
| 8006 | | |
| 8007 | | > select |
| 8008 | | |
| 8009 | | 73384 atoms, 75154 bonds, 42 pseudobonds, 8310 residues, 42 models selected |
| 8010 | | |
| 8011 | | > color sel byhetero |
| 8012 | | |
| 8013 | | > select clear |
| 8014 | | |
| 8015 | | > clip front 0 |
| 8016 | | |
| 8017 | | > clip front 1 |
| 8018 | | |
| 8019 | | [Repeated 3 time(s)] |
| 8020 | | |
| 8021 | | > show #!18 models |
| 8022 | | |
| 8023 | | > hide #!18,21 surfaces |
| 8024 | | |
| 8025 | | > select ::name="CLR" |
| 8026 | | |
| 8027 | | 504 atoms, 558 bonds, 18 residues, 2 models selected |
| 8028 | | |
| 8029 | | > show sel atoms |
| 8030 | | |
| 8031 | | > volume #2 level 0.1459 |
| 8032 | | |
| 8033 | | > hide #!21 models |
| 8034 | | |
| 8035 | | > hide #!2 models |
| 8036 | | |
| 8037 | | > show #!1 models |
| 8038 | | |
| 8039 | | > show #!21 models |
| 8040 | | |
| 8041 | | > hide #!21 models |
| 8042 | | |
| 8043 | | > volume #1 level 0.08407 |
| 8044 | | |
| 8045 | | > hide #!18 models |
| 8046 | | |
| 8047 | | > hide #!1 models |
| 8048 | | |
| 8049 | | > show #!1 models |
| 8050 | | |
| 8051 | | > show #!21 models |
| 8052 | | |
| 8053 | | > hide #!21 models |
| 8054 | | |
| 8055 | | > show #!18 models |
| 8056 | | |
| 8057 | | > show #!19 models |
| 8058 | | |
| 8059 | | > lighting simple |
| 8060 | | |
| 8061 | | > lighting soft |
| 8062 | | |
| 8063 | | > hide sel & #!18 surfaces |
| 8064 | | |
| 8065 | | > select clear |
| 8066 | | |
| 8067 | | > hide #!19 models |
| 8068 | | |
| 8069 | | > show #!19 models |
| 8070 | | |
| 8071 | | > hide #!18-19 surfaces |
| 8072 | | |
| 8073 | | > ~clip |
| 8074 | | |
| 8075 | | > hide #!1 models |
| 8076 | | |
| 8077 | | > select ::name="CLR" |
| 8078 | | |
| 8079 | | 504 atoms, 558 bonds, 18 residues, 2 models selected |
| 8080 | | |
| 8081 | | > color sel yellow |
| 8082 | | |
| 8083 | | > color sel byhetero |
| 8084 | | |
| 8085 | | > select clear |
| 8086 | | |
| 8087 | | > show #!11 models |
| 8088 | | |
| 8089 | | > hide #!11 models |
| 8090 | | |
| 8091 | | > show #!9 models |
| 8092 | | |
| 8093 | | > hide #!9 models |
| 8094 | | |
| 8095 | | > show #!10 models |
| 8096 | | |
| 8097 | | > hide #!10 models |
| 8098 | | |
| 8099 | | > show #!10 models |
| 8100 | | |
| 8101 | | > hide #!10 models |
| 8102 | | |
| 8103 | | > rename #11 id #30 |
| 8104 | | |
| 8105 | | > rename #12 id #31 |
| 8106 | | |
| 8107 | | > open "C:/Users/OJS/OneDrive - |
| 8108 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/N55H_POPE_C2_P58_J151_004_volume_map.mrc" |
| 8109 | | |
| 8110 | | Opened N55H_POPE_C2_P58_J151_004_volume_map.mrc as #11, grid size 256,256,256, |
| 8111 | | pixel 1.1, shown at level 0.209, step 1, values float32 |
| 8112 | | |
| 8113 | | > open "C:/Users/OJS/OneDrive - |
| 8114 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc" |
| 8115 | | |
| 8116 | | Opened N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc as #12, grid size |
| 8117 | | 256,256,256, pixel 1.1, shown at level 0.259, step 1, values float32 |
| 8118 | | |
| 8119 | | > close #9-10 |
| 8120 | | |
| 8121 | | > open "C:/Users/OJS/OneDrive - |
| 8122 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/N55H_POPE_C6_P58_J139_004_volume_map.mrc" |
| 8123 | | |
| 8124 | | Opened N55H_POPE_C6_P58_J139_004_volume_map.mrc as #9, grid size 256,256,256, |
| 8125 | | pixel 1.1, shown at level 0.213, step 1, values float32 |
| 8126 | | |
| 8127 | | > open "C:/Users/OJS/OneDrive - |
| 8128 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/N55H_POPE_C6_P58_J139_004_volume_map_sharp.mrc" |
| 8129 | | |
| 8130 | | Opened N55H_POPE_C6_P58_J139_004_volume_map_sharp.mrc as #10, grid size |
| 8131 | | 256,256,256, pixel 1.1, shown at level 0.251, step 1, values float32 |
| 8132 | | |
| 8133 | | > color #9 #ffaaffff models |
| 8134 | | |
| 8135 | | > color #10 #ffaaffff models |
| 8136 | | |
| 8137 | | > color #11 #5555ffff models |
| 8138 | | |
| 8139 | | > color #11 #55aa7fff models |
| 8140 | | |
| 8141 | | > color #11 #55ff7fff models |
| 8142 | | |
| 8143 | | > color #12 #55ff00ff models |
| 8144 | | |
| 8145 | | > color #12 #55ff7fff models |
| 8146 | | |
| 8147 | | > close #21 |
| 8148 | | |
| 8149 | | > close #17 |
| 8150 | | |
| 8151 | | > open "C:/Users/OJS/OneDrive - |
| 8152 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Models/231006_PIP2_HC_90.pdb" |
| 8153 | | |
| 8154 | | Chain information for 231006_PIP2_HC_90.pdb #17 |
| 8155 | | --- |
| 8156 | | Chain | Description |
| 8157 | | A B C D E F | No description available |
| 8158 | | |
| 8159 | | |
| 8160 | | > color #17 #ff557fff |
| 8161 | | |
| 8162 | | > hide #!17-19 atoms |
| 8163 | | |
| 8164 | | > show #!17-19 cartoons |
| 8165 | | |
| 8166 | | > color #17 #ff557fff |
| 8167 | | |
| 8168 | | > ribbon style thickness 0.6 |
| 8169 | | |
| 8170 | | > select clear |
| 8171 | | |
| 8172 | | > fitmap #17 inMap #1 |
| 8173 | | |
| 8174 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 8175 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 8176 | | average map value = 0.0003365, steps = 464 |
| 8177 | | shifted from previous position = 60.8 |
| 8178 | | rotated from previous position = 24.5 degrees |
| 8179 | | atoms outside contour = 11526, contour level = 0.084067 |
| 8180 | | |
| 8181 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 8182 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8183 | | Matrix rotation and translation |
| 8184 | | 0.12268988 0.98521157 -0.11960501 103.51842698 |
| 8185 | | -0.92084376 0.15795414 0.35650704 213.58576967 |
| 8186 | | 0.37012696 0.06639772 0.92660530 63.99014458 |
| 8187 | | Axis -0.14583979 -0.24619136 -0.95818608 |
| 8188 | | Axis point 152.16987089 49.52669903 0.00000000 |
| 8189 | | Rotation angle (degrees) 84.05206677 |
| 8190 | | Shift along axis -128.99454312 |
| 8191 | | |
| 8192 | | |
| 8193 | | > ui mousemode right "translate selected models" |
| 8194 | | |
| 8195 | | > select add #17 |
| 8196 | | |
| 8197 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 8198 | | |
| 8199 | | > view matrix models |
| 8200 | | > #17,0.91038,0.17268,-0.37601,-46.057,-0.18495,0.98274,0.0035092,-60.982,0.37013,0.066349,0.92661,-141.03 |
| 8201 | | |
| 8202 | | > hide #!9 models |
| 8203 | | |
| 8204 | | > hide #!10 models |
| 8205 | | |
| 8206 | | > hide #!11 models |
| 8207 | | |
| 8208 | | > hide #!12 models |
| 8209 | | |
| 8210 | | > ui mousemode right "translate selected models" |
| 8211 | | |
| 8212 | | > view matrix models |
| 8213 | | > #17,0.91038,0.17268,-0.37601,-17.729,-0.18495,0.98274,0.0035092,-40.744,0.37013,0.066349,0.92661,-124.51 |
| 8214 | | |
| 8215 | | > ui mousemode right "rotate selected models" |
| 8216 | | |
| 8217 | | > view matrix models |
| 8218 | | > #17,0.59061,-0.78584,0.1834,102.65,0.78528,0.61203,0.093574,-157.95,-0.18578,0.088755,0.97857,-42.987 |
| 8219 | | |
| 8220 | | > view matrix models |
| 8221 | | > #17,0.69309,0.31893,-0.64645,40.933,-0.52553,0.83739,-0.15032,68.186,0.49339,0.44392,0.748,-178.67 |
| 8222 | | |
| 8223 | | > view matrix models |
| 8224 | | > #17,0.25819,0.9349,0.2435,-143.17,-0.95936,0.21841,0.17868,190.03,0.11387,-0.27974,0.9533,-26.955 |
| 8225 | | |
| 8226 | | > view matrix models |
| 8227 | | > #17,-0.49385,0.68738,-0.53256,160.12,-0.83163,-0.55225,0.058386,319.81,-0.25398,0.47173,0.84437,-73.242 |
| 8228 | | |
| 8229 | | > view matrix models |
| 8230 | | > #17,-0.88482,0.43784,0.15932,149.5,-0.38946,-0.88272,0.26291,265.61,0.25574,0.17058,0.95158,-127.09 |
| 8231 | | |
| 8232 | | > view matrix models |
| 8233 | | > #17,-0.95517,0.26487,-0.13229,241.03,-0.26326,-0.96426,-0.029796,308.49,-0.13546,0.0063684,0.99076,-39.65 |
| 8234 | | |
| 8235 | | > ui mousemode right "translate selected models" |
| 8236 | | |
| 8237 | | > view matrix models |
| 8238 | | > #17,-0.95517,0.26487,-0.13229,255.7,-0.26326,-0.96426,-0.029796,315.7,-0.13546,0.0063684,0.99076,-43.241 |
| 8239 | | |
| 8240 | | > fitmap #17 inMap #1 |
| 8241 | | |
| 8242 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 8243 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 8244 | | average map value = 0.1776, steps = 108 |
| 8245 | | shifted from previous position = 10.7 |
| 8246 | | rotated from previous position = 9 degrees |
| 8247 | | atoms outside contour = 1312, contour level = 0.084067 |
| 8248 | | |
| 8249 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 8250 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8251 | | Matrix rotation and translation |
| 8252 | | -0.49939248 -0.86637588 -0.00007891 401.24114656 |
| 8253 | | 0.86637588 -0.49939248 -0.00000801 107.35493075 |
| 8254 | | -0.00003246 -0.00007237 1.00000001 0.02478257 |
| 8255 | | Axis -0.00003714 -0.00002680 1.00000000 |
| 8256 | | Axis point 169.60477101 169.59963292 0.00000000 |
| 8257 | | Rotation angle (degrees) 119.95981452 |
| 8258 | | Shift along axis 0.00700158 |
| 8259 | | |
| 8260 | | |
| 8261 | | > view matrix models |
| 8262 | | > #17,-0.98201,0.18885,-8.3786e-06,248.32,-0.18885,-0.98201,-2.9595e-05,309.49,-1.3816e-05,-2.748e-05,1,-71.796 |
| 8263 | | |
| 8264 | | > view matrix models |
| 8265 | | > #17,-0.98201,0.18885,-8.3786e-06,246.28,-0.18885,-0.98201,-2.9595e-05,308.4,-1.3816e-05,-2.748e-05,1,-71.813 |
| 8266 | | |
| 8267 | | > ui mousemode right "rotate selected models" |
| 8268 | | |
| 8269 | | > view matrix models |
| 8270 | | > #17,-0.55538,-0.62177,-0.55222,406.59,0.79754,-0.58633,-0.14194,98.465,-0.23553,-0.51925,0.82152,86.954 |
| 8271 | | |
| 8272 | | > view matrix models |
| 8273 | | > #17,-0.32594,-0.93222,0.15723,298.04,0.91303,-0.26726,0.30815,-52.814,-0.24524,0.244,0.93825,-60.966 |
| 8274 | | |
| 8275 | | > view matrix models |
| 8276 | | > #17,0.24737,-0.9686,0.025075,229.76,0.9688,0.24686,-0.022042,-92.554,0.01516,0.029745,0.99944,-79.34 |
| 8277 | | |
| 8278 | | > view matrix models |
| 8279 | | > #17,0.57134,-0.79843,-0.18995,183.01,0.79497,0.59591,-0.11367,-106.48,0.20395,-0.08606,0.97519,-87.538 |
| 8280 | | |
| 8281 | | > view matrix models |
| 8282 | | > #17,0.73963,-0.65643,0.14848,72.057,0.65382,0.75314,0.072749,-141.34,-0.15958,0.043274,0.98624,-49.721 |
| 8283 | | |
| 8284 | | > view matrix models |
| 8285 | | > #17,0.91,-0.41459,-0.0024811,28.167,0.41448,0.90987,-0.018234,-111.65,0.0098171,0.015564,0.99983,-76.096 |
| 8286 | | |
| 8287 | | > fitmap #17 inMap #1 |
| 8288 | | |
| 8289 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 8290 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 8291 | | average map value = 0.1776, steps = 108 |
| 8292 | | shifted from previous position = 3.55 |
| 8293 | | rotated from previous position = 13.6 degrees |
| 8294 | | atoms outside contour = 1311, contour level = 0.084067 |
| 8295 | | |
| 8296 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 8297 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8298 | | Matrix rotation and translation |
| 8299 | | 0.49939449 0.86637472 -0.00015750 -62.01244167 |
| 8300 | | -0.86637473 0.49939446 -0.00017212 231.86485271 |
| 8301 | | -0.00007047 0.00022241 0.99999999 -0.02032724 |
| 8302 | | Axis 0.00022769 -0.00005023 -0.99999997 |
| 8303 | | Axis point 169.63264160 169.59345189 0.00000000 |
| 8304 | | Rotation angle (degrees) 60.04005412 |
| 8305 | | Shift along axis -0.00543780 |
| 8306 | | |
| 8307 | | |
| 8308 | | > select clear |
| 8309 | | |
| 8310 | | > hide #!19 models |
| 8311 | | |
| 8312 | | > hide #!18 models |
| 8313 | | |
| 8314 | | > show #!1 models |
| 8315 | | |
| 8316 | | > hide #!1 models |
| 8317 | | |
| 8318 | | > show #!3 models |
| 8319 | | |
| 8320 | | > hide #!3 models |
| 8321 | | |
| 8322 | | > show #!3 models |
| 8323 | | |
| 8324 | | > hide #!3 models |
| 8325 | | |
| 8326 | | > show #!18 models |
| 8327 | | |
| 8328 | | > select add #17 |
| 8329 | | |
| 8330 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 8331 | | |
| 8332 | | > ui tool show "Selection Inspector" |
| 8333 | | |
| 8334 | | > size =sel stickRadius 0.3 |
| 8335 | | |
| 8336 | | Changed 11724 bond radii |
| 8337 | | |
| 8338 | | > setattr =sel p display false |
| 8339 | | |
| 8340 | | Assigning display attribute to 6 items |
| 8341 | | |
| 8342 | | > select #17:200 |
| 8343 | | |
| 8344 | | 48 atoms, 42 bonds, 6 residues, 1 model selected |
| 8345 | | |
| 8346 | | > ui tool show "Selection Inspector" |
| 8347 | | |
| 8348 | | > setattr sel r ss_type 0 |
| 8349 | | |
| 8350 | | Assigning ss_type attribute to 6 items |
| 8351 | | |
| 8352 | | > show #!20 models |
| 8353 | | |
| 8354 | | > hide sel surfaces |
| 8355 | | |
| 8356 | | [Repeated 1 time(s)] |
| 8357 | | |
| 8358 | | > select add #20 |
| 8359 | | |
| 8360 | | 11832 atoms, 12108 bonds, 6 pseudobonds, 1242 residues, 3 models selected |
| 8361 | | |
| 8362 | | > hide sel surfaces |
| 8363 | | |
| 8364 | | > select subtract #20 |
| 8365 | | |
| 8366 | | 48 atoms, 42 bonds, 6 residues, 7 models selected |
| 8367 | | |
| 8368 | | > show #!19 models |
| 8369 | | |
| 8370 | | > hide #!20 models |
| 8371 | | |
| 8372 | | > hide #!19 models |
| 8373 | | |
| 8374 | | > hide #!18 models |
| 8375 | | |
| 8376 | | > select #17:45-52 |
| 8377 | | |
| 8378 | | 396 atoms, 408 bonds, 48 residues, 1 model selected |
| 8379 | | |
| 8380 | | > select #17:45-54 |
| 8381 | | |
| 8382 | | 498 atoms, 510 bonds, 60 residues, 1 model selected |
| 8383 | | |
| 8384 | | > ui tool show "Selection Inspector" |
| 8385 | | |
| 8386 | | > setattr sel r ss_type 0 |
| 8387 | | |
| 8388 | | Assigning ss_type attribute to 60 items |
| 8389 | | |
| 8390 | | > select clear |
| 8391 | | |
| 8392 | | > select ::name="PIO" |
| 8393 | | |
| 8394 | | 282 atoms, 282 bonds, 6 residues, 1 model selected |
| 8395 | | |
| 8396 | | > show sel atoms |
| 8397 | | |
| 8398 | | > color sel orange |
| 8399 | | |
| 8400 | | > color sel byhetero |
| 8401 | | |
| 8402 | | > select clear |
| 8403 | | |
| 8404 | | > select down |
| 8405 | | |
| 8406 | | Nothing selected |
| 8407 | | |
| 8408 | | > select down |
| 8409 | | |
| 8410 | | Nothing selected |
| 8411 | | |
| 8412 | | > select ::name="PIO" |
| 8413 | | |
| 8414 | | 282 atoms, 282 bonds, 6 residues, 1 model selected |
| 8415 | | |
| 8416 | | > color sel green |
| 8417 | | |
| 8418 | | > color sel cyan |
| 8419 | | |
| 8420 | | > color sel byhetero |
| 8421 | | |
| 8422 | | > select clear |
| 8423 | | |
| 8424 | | > show #!18 models |
| 8425 | | |
| 8426 | | > select ::name="CLR" |
| 8427 | | |
| 8428 | | 504 atoms, 558 bonds, 18 residues, 2 models selected |
| 8429 | | |
| 8430 | | > show sel atoms |
| 8431 | | |
| 8432 | | > hide #!17 models |
| 8433 | | |
| 8434 | | > mlp sel & #!18 |
| 8435 | | |
| 8436 | | mlp: no amino acids specified |
| 8437 | | |
| 8438 | | > select add #20 |
| 8439 | | |
| 8440 | | 11952 atoms, 12252 bonds, 6 pseudobonds, 1242 residues, 3 models selected |
| 8441 | | |
| 8442 | | > select subtract #20 |
| 8443 | | |
| 8444 | | 168 atoms, 186 bonds, 6 residues, 7 models selected |
| 8445 | | |
| 8446 | | > select add #18 |
| 8447 | | |
| 8448 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 8449 | | |
| 8450 | | > select subtract #18 |
| 8451 | | |
| 8452 | | 6 models selected |
| 8453 | | |
| 8454 | | > select add #18 |
| 8455 | | |
| 8456 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 8457 | | |
| 8458 | | > mlp sel |
| 8459 | | |
| 8460 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 8461 | | mean 0.2399, maximum 23.77 |
| 8462 | | Map values for surface "230904_Chol_HC_150.pdb_B SES surface": minimum -28.02, |
| 8463 | | mean 0.1571, maximum 25.31 |
| 8464 | | Map values for surface "230904_Chol_HC_150.pdb_C SES surface": minimum -27.97, |
| 8465 | | mean 0.1452, maximum 24.75 |
| 8466 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.84, |
| 8467 | | mean 0.223, maximum 24.9 |
| 8468 | | Map values for surface "230904_Chol_HC_150.pdb_E SES surface": minimum -27.89, |
| 8469 | | mean 0.1406, maximum 24.79 |
| 8470 | | Map values for surface "230904_Chol_HC_150.pdb_F SES surface": minimum -27.69, |
| 8471 | | mean 0.1485, maximum 25.26 |
| 8472 | | To also show corresponding color key, enter the above mlp command and add key |
| 8473 | | true |
| 8474 | | |
| 8475 | | > clip front 0 |
| 8476 | | |
| 8477 | | > ~clip |
| 8478 | | |
| 8479 | | > hide sel cartoons |
| 8480 | | |
| 8481 | | > hide sel surfaces |
| 8482 | | |
| 8483 | | > show sel cartoons |
| 8484 | | |
| 8485 | | > select clear |
| 8486 | | |
| 8487 | | > show #!17 models |
| 8488 | | |
| 8489 | | > morph #17,18 |
| 8490 | | |
| 8491 | | Computed 51 frame morph #21 |
| 8492 | | |
| 8493 | | > coordset #21 1,51 |
| 8494 | | |
| 8495 | | > close #17 |
| 8496 | | |
| 8497 | | > close #21 |
| 8498 | | |
| 8499 | | > undo |
| 8500 | | |
| 8501 | | [Repeated 1 time(s)] |
| 8502 | | |
| 8503 | | > open "C:/Users/OJS/OneDrive - |
| 8504 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Models/231006_PIP2_HC_90.pdb" |
| 8505 | | |
| 8506 | | Chain information for 231006_PIP2_HC_90.pdb #17 |
| 8507 | | --- |
| 8508 | | Chain | Description |
| 8509 | | A B C D E F | No description available |
| 8510 | | |
| 8511 | | |
| 8512 | | > color #17 #ff557fff |
| 8513 | | |
| 8514 | | > hide #!17 atoms |
| 8515 | | |
| 8516 | | > show #!17 cartoons |
| 8517 | | |
| 8518 | | > color #17 #ff557fff |
| 8519 | | |
| 8520 | | > fitmap #17 inMap #1 |
| 8521 | | |
| 8522 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 8523 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 8524 | | average map value = 0.0003365, steps = 464 |
| 8525 | | shifted from previous position = 60.8 |
| 8526 | | rotated from previous position = 24.5 degrees |
| 8527 | | atoms outside contour = 11526, contour level = 0.084067 |
| 8528 | | |
| 8529 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 8530 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8531 | | Matrix rotation and translation |
| 8532 | | 0.12268988 0.98521157 -0.11960501 103.51842698 |
| 8533 | | -0.92084376 0.15795414 0.35650704 213.58576967 |
| 8534 | | 0.37012696 0.06639772 0.92660530 63.99014458 |
| 8535 | | Axis -0.14583979 -0.24619136 -0.95818608 |
| 8536 | | Axis point 152.16987089 49.52669903 0.00000000 |
| 8537 | | Rotation angle (degrees) 84.05206677 |
| 8538 | | Shift along axis -128.99454312 |
| 8539 | | |
| 8540 | | |
| 8541 | | > show #!3 models |
| 8542 | | |
| 8543 | | > hide #!3 models |
| 8544 | | |
| 8545 | | > show #!18 models |
| 8546 | | |
| 8547 | | > select subtract #18 |
| 8548 | | |
| 8549 | | 6 models selected |
| 8550 | | |
| 8551 | | > ui mousemode right "translate selected models" |
| 8552 | | |
| 8553 | | > select add #17 |
| 8554 | | |
| 8555 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 8556 | | |
| 8557 | | > view matrix models |
| 8558 | | > #17,0.91038,0.17268,-0.37601,63.716,-0.18495,0.98274,0.0035092,-71.828,0.37013,0.066349,0.92661,-126.45 |
| 8559 | | |
| 8560 | | > view matrix models |
| 8561 | | > #17,0.91038,0.17268,-0.37601,-13.502,-0.18495,0.98274,0.0035092,-22.938,0.37013,0.066349,0.92661,-115.33 |
| 8562 | | |
| 8563 | | > view matrix models |
| 8564 | | > #17,0.91038,0.17268,-0.37601,-2.7055,-0.18495,0.98274,0.0035092,-24.895,0.37013,0.066349,0.92661,-133.5 |
| 8565 | | |
| 8566 | | > fitmap #17 inMap #1 |
| 8567 | | |
| 8568 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 8569 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 8570 | | average map value = 0.06834, steps = 72 |
| 8571 | | shifted from previous position = 2.99 |
| 8572 | | rotated from previous position = 5.25 degrees |
| 8573 | | atoms outside contour = 8196, contour level = 0.084067 |
| 8574 | | |
| 8575 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 8576 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8577 | | Matrix rotation and translation |
| 8578 | | 0.12947023 0.98727610 -0.09232209 0.97975031 |
| 8579 | | -0.94974864 0.15022797 0.27460717 251.30132577 |
| 8580 | | 0.28498245 0.05212933 0.95711418 -47.66813956 |
| 8581 | | Axis -0.11202700 -0.18998880 -0.97537388 |
| 8582 | | Axis point 148.17541530 129.81546918 0.00000000 |
| 8583 | | Rotation angle (degrees) 83.19987218 |
| 8584 | | Shift along axis -1.35993665 |
| 8585 | | |
| 8586 | | |
| 8587 | | > ui mousemode right "rotate selected models" |
| 8588 | | |
| 8589 | | > view matrix models |
| 8590 | | > #17,0.77406,-0.62014,-0.12751,112.21,0.3209,0.55791,-0.76535,93.893,0.54576,0.5515,0.63086,-191.51 |
| 8591 | | |
| 8592 | | > view matrix models |
| 8593 | | > #17,0.41356,-0.90536,0.096395,183.12,0.90974,0.40664,-0.083773,-97.818,0.036647,0.12234,0.99181,-94.607 |
| 8594 | | |
| 8595 | | > fitmap #17 inMap #1 |
| 8596 | | |
| 8597 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 8598 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 8599 | | average map value = 0.1779, steps = 144 |
| 8600 | | shifted from previous position = 8.28 |
| 8601 | | rotated from previous position = 9 degrees |
| 8602 | | atoms outside contour = 1297, contour level = 0.084067 |
| 8603 | | |
| 8604 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 8605 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8606 | | Matrix rotation and translation |
| 8607 | | 0.99999975 0.00070003 0.00011261 -0.12840814 |
| 8608 | | -0.00070003 0.99999976 0.00001442 0.11692133 |
| 8609 | | -0.00011260 -0.00001449 1.00000000 0.02751741 |
| 8610 | | Axis -0.02038098 0.15877969 -0.98710366 |
| 8611 | | Axis point 168.31477364 183.66649757 0.00000000 |
| 8612 | | Rotation angle (degrees) 0.04063292 |
| 8613 | | Shift along axis -0.00598071 |
| 8614 | | |
| 8615 | | |
| 8616 | | > view matrix models |
| 8617 | | > #17,0.57709,-0.80933,0.10933,129.09,0.78258,0.5863,0.20932,-159.69,-0.23351,-0.035237,0.97172,-20.706 |
| 8618 | | |
| 8619 | | > view matrix models |
| 8620 | | > #17,0.84555,-0.52807,-0.078665,68.264,0.49174,0.82766,-0.27049,-68.586,0.20795,0.19003,0.9595,-131.68 |
| 8621 | | |
| 8622 | | > view matrix models |
| 8623 | | > #17,0.95288,-0.29805,-0.056488,7.226,0.29421,0.95336,-0.067378,-91.418,0.073935,0.047584,0.99613,-91.104 |
| 8624 | | |
| 8625 | | > fitmap #17 inMap #1 |
| 8626 | | |
| 8627 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 8628 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 8629 | | average map value = 0.1776, steps = 100 |
| 8630 | | shifted from previous position = 0.229 |
| 8631 | | rotated from previous position = 8.13 degrees |
| 8632 | | atoms outside contour = 1305, contour level = 0.084067 |
| 8633 | | |
| 8634 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 8635 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8636 | | Matrix rotation and translation |
| 8637 | | 0.49936269 0.86639304 0.00002022 -62.03372790 |
| 8638 | | -0.86639303 0.49936268 0.00018202 231.82679916 |
| 8639 | | 0.00014760 -0.00010840 0.99999999 0.00003691 |
| 8640 | | Axis -0.00016760 -0.00007352 -0.99999998 |
| 8641 | | Axis point 169.58057604 169.59057282 0.00000000 |
| 8642 | | Rotation angle (degrees) 60.04215595 |
| 8643 | | Shift along axis -0.00668272 |
| 8644 | | |
| 8645 | | |
| 8646 | | > select clear |
| 8647 | | |
| 8648 | | > select #17:200 |
| 8649 | | |
| 8650 | | 48 atoms, 42 bonds, 6 residues, 1 model selected |
| 8651 | | |
| 8652 | | > ui tool show "Selection Inspector" |
| 8653 | | |
| 8654 | | > setattr sel r ss_type 0 |
| 8655 | | |
| 8656 | | Assigning ss_type attribute to 6 items |
| 8657 | | |
| 8658 | | > select #17:46-55 |
| 8659 | | |
| 8660 | | 462 atoms, 462 bonds, 60 residues, 1 model selected |
| 8661 | | |
| 8662 | | > ui tool show "Selection Inspector" |
| 8663 | | |
| 8664 | | > setattr sel r ss_type 0 |
| 8665 | | |
| 8666 | | Assigning ss_type attribute to 60 items |
| 8667 | | |
| 8668 | | > select clear |
| 8669 | | |
| 8670 | | > select add #17 |
| 8671 | | |
| 8672 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 8673 | | |
| 8674 | | > ui tool show "Selection Inspector" |
| 8675 | | |
| 8676 | | > setattr =sel p display false |
| 8677 | | |
| 8678 | | Assigning display attribute to 6 items |
| 8679 | | |
| 8680 | | > size =sel stickRadius 0.3 |
| 8681 | | |
| 8682 | | Changed 11724 bond radii |
| 8683 | | |
| 8684 | | > select clear |
| 8685 | | |
| 8686 | | > ribbon style thickness 0.6 |
| 8687 | | |
| 8688 | | > select clear |
| 8689 | | |
| 8690 | | > select ::name="PIO" |
| 8691 | | |
| 8692 | | 282 atoms, 282 bonds, 6 residues, 1 model selected |
| 8693 | | |
| 8694 | | > show sel atoms |
| 8695 | | |
| 8696 | | > color sel cyan |
| 8697 | | |
| 8698 | | > color sel byhetero |
| 8699 | | |
| 8700 | | > select clear |
| 8701 | | |
| 8702 | | > hide #!18 models |
| 8703 | | |
| 8704 | | > show #!18 models |
| 8705 | | |
| 8706 | | > hide #!18 models |
| 8707 | | |
| 8708 | | > show #!18 models |
| 8709 | | |
| 8710 | | > select clear |
| 8711 | | |
| 8712 | | > show #!20 models |
| 8713 | | |
| 8714 | | > color #20 #aaaaffff |
| 8715 | | |
| 8716 | | > color #20 magenta |
| 8717 | | |
| 8718 | | > color #20 #ffaaffff |
| 8719 | | |
| 8720 | | > color #7 #ffaaffb3 models |
| 8721 | | |
| 8722 | | > color #8 #ffaaffb3 models |
| 8723 | | |
| 8724 | | > save "C:/Users/OJS/OneDrive - |
| 8725 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 8726 | | |
| 8727 | | > color #9 #aa5500ff models |
| 8728 | | |
| 8729 | | > color #10 #aa5500ff models |
| 8730 | | |
| 8731 | | > color #11 #00aa00ff models |
| 8732 | | |
| 8733 | | > color #12 #00aa00ff models |
| 8734 | | |
| 8735 | | > hide #!20 models |
| 8736 | | |
| 8737 | | > show #!20 models |
| 8738 | | |
| 8739 | | > hide #!20 models |
| 8740 | | |
| 8741 | | > hide #!18 models |
| 8742 | | |
| 8743 | | > hide #!17 models |
| 8744 | | |
| 8745 | | > show #!4 models |
| 8746 | | |
| 8747 | | > hide #!4 models |
| 8748 | | |
| 8749 | | > show #!3 models |
| 8750 | | |
| 8751 | | > transparency 0 |
| 8752 | | |
| 8753 | | > show #!7 models |
| 8754 | | |
| 8755 | | > hide #!7 models |
| 8756 | | |
| 8757 | | > show #!7 models |
| 8758 | | |
| 8759 | | > hide #!3 models |
| 8760 | | |
| 8761 | | > show #!3 models |
| 8762 | | |
| 8763 | | > hide #!7 models |
| 8764 | | |
| 8765 | | > show #!7 models |
| 8766 | | |
| 8767 | | > hide #!7 models |
| 8768 | | |
| 8769 | | > show #!7 models |
| 8770 | | |
| 8771 | | > hide #!7 models |
| 8772 | | |
| 8773 | | > show #!7 models |
| 8774 | | |
| 8775 | | > hide #!3 models |
| 8776 | | |
| 8777 | | > show #!3 models |
| 8778 | | |
| 8779 | | > volume #3 level 0.1805 |
| 8780 | | |
| 8781 | | > hide #!7 models |
| 8782 | | |
| 8783 | | > hide #!3 models |
| 8784 | | |
| 8785 | | > show #!3 models |
| 8786 | | |
| 8787 | | > hide #!3 models |
| 8788 | | |
| 8789 | | > show #!7 models |
| 8790 | | |
| 8791 | | > show #!20 models |
| 8792 | | |
| 8793 | | > hide #!7 models |
| 8794 | | |
| 8795 | | > show #!3 models |
| 8796 | | |
| 8797 | | > hide #!3 models |
| 8798 | | |
| 8799 | | > show #!18 models |
| 8800 | | |
| 8801 | | > morph #18,20,17 |
| 8802 | | |
| 8803 | | Computed 101 frame morph #21 |
| 8804 | | |
| 8805 | | > coordset #21 1,101 |
| 8806 | | |
| 8807 | | > hide #!21 models |
| 8808 | | |
| 8809 | | > close #21 |
| 8810 | | |
| 8811 | | > show #!5 models |
| 8812 | | |
| 8813 | | > hide #!5 models |
| 8814 | | |
| 8815 | | > show #!7 models |
| 8816 | | |
| 8817 | | > show #!9 models |
| 8818 | | |
| 8819 | | > volume #9 level 0.6345 |
| 8820 | | |
| 8821 | | > show #!10 models |
| 8822 | | |
| 8823 | | > hide #!10 models |
| 8824 | | |
| 8825 | | > fitmap #9 inMap #1 |
| 8826 | | |
| 8827 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 8828 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 8829 | | correlation = 0.7241, correlation about mean = 0.1056, overlap = 1838 |
| 8830 | | steps = 260, shift = 32.7, angle = 16.5 degrees |
| 8831 | | |
| 8832 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 8833 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8834 | | Matrix rotation and translation |
| 8835 | | 0.33525711 0.89895582 -0.28192393 63.01461047 |
| 8836 | | -0.93379245 0.35677972 0.02720110 239.33114414 |
| 8837 | | 0.12503732 0.25413908 0.95905110 -4.81702597 |
| 8838 | | Axis 0.12000610 -0.21520342 -0.96916770 |
| 8839 | | Axis point 198.19355642 71.21595615 0.00000000 |
| 8840 | | Rotation angle (degrees) 71.00146607 |
| 8841 | | Shift along axis -39.27423735 |
| 8842 | | |
| 8843 | | |
| 8844 | | > ui mousemode right "rotate selected models" |
| 8845 | | |
| 8846 | | > select add #9 |
| 8847 | | |
| 8848 | | 2 models selected |
| 8849 | | |
| 8850 | | > view matrix models |
| 8851 | | > #9,0.97202,0.2346,0.011801,-46.176,-0.23019,0.96135,-0.15105,50.824,-0.046781,0.1441,0.98846,-40.308 |
| 8852 | | |
| 8853 | | > ui mousemode right "translate selected models" |
| 8854 | | |
| 8855 | | > view matrix models |
| 8856 | | > #9,0.97202,0.2346,0.011801,-65.054,-0.23019,0.96135,-0.15105,29.672,-0.046781,0.1441,0.98846,-49.027 |
| 8857 | | |
| 8858 | | > view matrix models |
| 8859 | | > #9,0.97202,0.2346,0.011801,-69.753,-0.23019,0.96135,-0.15105,21.828,-0.046781,0.1441,0.98846,-49.368 |
| 8860 | | |
| 8861 | | > view matrix models |
| 8862 | | > #9,0.97202,0.2346,0.011801,-66.31,-0.23019,0.96135,-0.15105,31.882,-0.046781,0.1441,0.98846,-56.283 |
| 8863 | | |
| 8864 | | > ui mousemode right "rotate selected models" |
| 8865 | | |
| 8866 | | > view matrix models |
| 8867 | | > #9,0.99375,0.10519,-0.037404,-44.443,-0.10609,0.9941,-0.022722,-7.6899,0.034793,0.026548,0.99904,-52.66 |
| 8868 | | |
| 8869 | | > view matrix models |
| 8870 | | > #9,0.99775,-0.065319,-0.015173,-24.028,0.061278,0.98,-0.18932,-6.567,0.027236,0.18797,0.9818,-71.974 |
| 8871 | | |
| 8872 | | > ui mousemode right "translate selected models" |
| 8873 | | |
| 8874 | | > view matrix models |
| 8875 | | > #9,0.99775,-0.065319,-0.015173,-21.575,0.061278,0.98,-0.18932,-14.341,0.027236,0.18797,0.9818,-74.116 |
| 8876 | | |
| 8877 | | > fitmap #9 inMap #1 |
| 8878 | | |
| 8879 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 8880 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 8881 | | correlation = 0.9011, correlation about mean = 0.3642, overlap = 4905 |
| 8882 | | steps = 100, shift = 5.56, angle = 11 degrees |
| 8883 | | |
| 8884 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 8885 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8886 | | Matrix rotation and translation |
| 8887 | | 0.40874414 0.91264902 -0.00000336 -16.45053949 |
| 8888 | | -0.91264902 0.40874414 -0.00002185 240.54929908 |
| 8889 | | -0.00001857 0.00001201 1.00000001 30.15206210 |
| 8890 | | Axis 0.00001855 0.00000833 -1.00000000 |
| 8891 | | Axis point 177.42840075 132.97068170 0.00000000 |
| 8892 | | Rotation angle (degrees) 65.87403199 |
| 8893 | | Shift along axis -30.15036328 |
| 8894 | | |
| 8895 | | |
| 8896 | | > fitmap #9 inMap #1 |
| 8897 | | |
| 8898 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 8899 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 8900 | | correlation = 0.9012, correlation about mean = 0.3644, overlap = 4905 |
| 8901 | | steps = 48, shift = 0.0038, angle = 0.0154 degrees |
| 8902 | | |
| 8903 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 8904 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8905 | | Matrix rotation and translation |
| 8906 | | 0.40898936 0.91253915 0.00000223 -16.46790190 |
| 8907 | | -0.91253915 0.40898936 -0.00003981 240.49880525 |
| 8908 | | -0.00003724 0.00001425 1.00000001 30.15418165 |
| 8909 | | Axis 0.00002962 0.00002163 -1.00000000 |
| 8910 | | Axis point 177.43588722 132.96252036 0.00000000 |
| 8911 | | Rotation angle (degrees) 65.85863600 |
| 8912 | | Shift along axis -30.14946832 |
| 8913 | | |
| 8914 | | |
| 8915 | | > fitmap #9 inMap #1 |
| 8916 | | |
| 8917 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 8918 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 8919 | | correlation = 0.9012, correlation about mean = 0.3643, overlap = 4905 |
| 8920 | | steps = 28, shift = 0.017, angle = 0.014 degrees |
| 8921 | | |
| 8922 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 8923 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8924 | | Matrix rotation and translation |
| 8925 | | 0.40877490 0.91263525 -0.00000446 -16.45953480 |
| 8926 | | -0.91263525 0.40877490 0.00002735 240.54773100 |
| 8927 | | 0.00002678 -0.00000711 1.00000001 30.14676293 |
| 8928 | | Axis -0.00001888 -0.00001711 -1.00000000 |
| 8929 | | Axis point 177.42839260 132.97779659 0.00000000 |
| 8930 | | Rotation angle (degrees) 65.87210099 |
| 8931 | | Shift along axis -30.15056838 |
| 8932 | | |
| 8933 | | |
| 8934 | | > view matrix models |
| 8935 | | > #9,0.99611,-0.088091,-1.7463e-05,-19.746,0.088091,0.99611,5.2324e-05,-45.183,1.2786e-05,-5.3659e-05,1,-42.381 |
| 8936 | | |
| 8937 | | > fitmap #9 inMap #1 |
| 8938 | | |
| 8939 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 8940 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 8941 | | correlation = 0.9012, correlation about mean = 0.3643, overlap = 4905 |
| 8942 | | steps = 56, shift = 1.79, angle = 0.00141 degrees |
| 8943 | | |
| 8944 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 8945 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8946 | | Matrix rotation and translation |
| 8947 | | 0.40877252 0.91263631 -0.00000384 -16.45891324 |
| 8948 | | -0.91263631 0.40877252 0.00000287 240.54535440 |
| 8949 | | 0.00000418 0.00000234 1.00000001 30.14932904 |
| 8950 | | Axis -0.00000029 -0.00000440 -1.00000000 |
| 8951 | | Axis point 177.42691471 132.97585146 0.00000000 |
| 8952 | | Rotation angle (degrees) 65.87225037 |
| 8953 | | Shift along axis -30.15038159 |
| 8954 | | |
| 8955 | | |
| 8956 | | > fitmap #9 inMap #1 |
| 8957 | | |
| 8958 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 8959 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 8960 | | correlation = 0.9012, correlation about mean = 0.3644, overlap = 4905 |
| 8961 | | steps = 44, shift = 0.0159, angle = 0.0132 degrees |
| 8962 | | |
| 8963 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 8964 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8965 | | Matrix rotation and translation |
| 8966 | | 0.40897100 0.91254738 0.00005459 -16.46693254 |
| 8967 | | -0.91254738 0.40897100 -0.00004666 240.50711129 |
| 8968 | | -0.00006490 -0.00003072 1.00000000 30.16495060 |
| 8969 | | Axis 0.00000873 0.00006547 -1.00000000 |
| 8970 | | Axis point 177.43939564 132.96679241 0.00000000 |
| 8971 | | Rotation angle (degrees) 65.85978897 |
| 8972 | | Shift along axis -30.14934828 |
| 8973 | | |
| 8974 | | |
| 8975 | | > fitmap #9 inMap #1 |
| 8976 | | |
| 8977 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 8978 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 8979 | | correlation = 0.9012, correlation about mean = 0.3644, overlap = 4905 |
| 8980 | | steps = 40, shift = 0.0179, angle = 0.0082 degrees |
| 8981 | | |
| 8982 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 8983 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 8984 | | Matrix rotation and translation |
| 8985 | | 0.40895999 0.91255232 -0.00006546 -16.46769070 |
| 8986 | | -0.91255232 0.40895999 0.00003038 240.50164754 |
| 8987 | | 0.00005449 0.00004732 1.00000000 30.13646863 |
| 8988 | | Axis 0.00000928 -0.00006572 -1.00000000 |
| 8989 | | Axis point 177.42929860 132.96248706 0.00000000 |
| 8990 | | Rotation angle (degrees) 65.86048018 |
| 8991 | | Shift along axis -30.15242789 |
| 8992 | | |
| 8993 | | |
| 8994 | | > fitmap #9 inMap #1 |
| 8995 | | |
| 8996 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 8997 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 8998 | | correlation = 0.9012, correlation about mean = 0.3642, overlap = 4905 |
| 8999 | | steps = 40, shift = 0.00294, angle = 0.0137 degrees |
| 9000 | | |
| 9001 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 9002 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9003 | | Matrix rotation and translation |
| 9004 | | 0.40875338 0.91264487 -0.00014222 -16.44358710 |
| 9005 | | -0.91264488 0.40875340 0.00003684 240.54107813 |
| 9006 | | 0.00009176 0.00011475 1.00000000 30.12118952 |
| 9007 | | Axis 0.00004268 -0.00012819 -0.99999999 |
| 9008 | | Axis point 177.42478055 132.95872863 0.00000000 |
| 9009 | | Rotation angle (degrees) 65.87345156 |
| 9010 | | Shift along axis -30.15272579 |
| 9011 | | |
| 9012 | | |
| 9013 | | > fitmap #9 inMap #1 |
| 9014 | | |
| 9015 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 9016 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 9017 | | correlation = 0.9012, correlation about mean = 0.3643, overlap = 4905 |
| 9018 | | steps = 40, shift = 0.0151, angle = 0.013 degrees |
| 9019 | | |
| 9020 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 9021 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9022 | | Matrix rotation and translation |
| 9023 | | 0.40879877 0.91262455 0.00007654 -16.46213826 |
| 9024 | | -0.91262455 0.40879877 0.00000936 240.54024547 |
| 9025 | | -0.00002275 -0.00007367 1.00000000 30.16398353 |
| 9026 | | Axis -0.00004549 0.00005440 -1.00000000 |
| 9027 | | Axis point 177.42789760 132.97812510 0.00000000 |
| 9028 | | Rotation angle (degrees) 65.87060228 |
| 9029 | | Shift along axis -30.15014956 |
| 9030 | | |
| 9031 | | |
| 9032 | | > fitmap #9 inMap #1 |
| 9033 | | |
| 9034 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 9035 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 9036 | | correlation = 0.9012, correlation about mean = 0.3644, overlap = 4905 |
| 9037 | | steps = 40, shift = 0.0056, angle = 0.0101 degrees |
| 9038 | | |
| 9039 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 9040 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9041 | | Matrix rotation and translation |
| 9042 | | 0.40895855 0.91255296 0.00008860 -16.47310036 |
| 9043 | | -0.91255296 0.40895855 0.00002954 240.50960092 |
| 9044 | | -0.00000928 -0.00009293 1.00000000 30.16546844 |
| 9045 | | Axis -0.00006710 0.00005363 -1.00000000 |
| 9046 | | Axis point 177.43403883 132.97419523 0.00000000 |
| 9047 | | Rotation angle (degrees) 65.86057067 |
| 9048 | | Shift along axis -30.15146436 |
| 9049 | | |
| 9050 | | |
| 9051 | | > show #!10 models |
| 9052 | | |
| 9053 | | > hide #!9 models |
| 9054 | | |
| 9055 | | > view matrix models |
| 9056 | | > #9,0.99609,-0.088291,1.0874e-05,-25.247,0.088291,0.99609,0.00014099,-56.878,-2.328e-05,-0.00013948,1,-61.109 |
| 9057 | | |
| 9058 | | > select subtract #9 |
| 9059 | | |
| 9060 | | Nothing selected |
| 9061 | | |
| 9062 | | > show #!9 models |
| 9063 | | |
| 9064 | | > fitmap #9 inMap #1 |
| 9065 | | |
| 9066 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 9067 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 9068 | | correlation = 0.9012, correlation about mean = 0.3643, overlap = 4905 |
| 9069 | | steps = 196, shift = 24.5, angle = 0.0121 degrees |
| 9070 | | |
| 9071 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 9072 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9073 | | Matrix rotation and translation |
| 9074 | | 0.40878315 0.91263155 0.00000213 -16.45417490 |
| 9075 | | -0.91263155 0.40878315 0.00000930 240.53510094 |
| 9076 | | 0.00000762 -0.00000574 1.00000001 30.14999359 |
| 9077 | | Axis -0.00000824 -0.00000301 -1.00000000 |
| 9078 | | Axis point 177.42365263 132.96743568 0.00000000 |
| 9079 | | Rotation angle (degrees) 65.87158281 |
| 9080 | | Shift along axis -30.15058144 |
| 9081 | | |
| 9082 | | |
| 9083 | | > select add #10 |
| 9084 | | |
| 9085 | | 2 models selected |
| 9086 | | |
| 9087 | | > view matrix models #10,1,0,0,-13.919,0,1,0,-37.915,0,0,1,-41.314 |
| 9088 | | |
| 9089 | | > view matrix models #10,1,0,0,-24.288,0,1,0,-36.559,0,0,1,-48.086 |
| 9090 | | |
| 9091 | | > view matrix models #10,1,0,0,-26.82,0,1,0,-34.667,0,0,1,-47.904 |
| 9092 | | |
| 9093 | | > view matrix models #10,1,0,0,-26.329,0,1,0,-34.246,0,0,1,-46.821 |
| 9094 | | |
| 9095 | | > volume #10 level 0.8465 |
| 9096 | | |
| 9097 | | > fitmap #9 inMap #1 |
| 9098 | | |
| 9099 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map.mrc in map |
| 9100 | | WT_PIP2_P68_J150_009_volume_map.mrc using 29710 points |
| 9101 | | correlation = 0.9012, correlation about mean = 0.3643, overlap = 4905 |
| 9102 | | steps = 40, shift = 0.0161, angle = 0.0103 degrees |
| 9103 | | |
| 9104 | | Position of N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) relative to |
| 9105 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9106 | | Matrix rotation and translation |
| 9107 | | 0.40877232 0.91263640 0.00001451 -16.46019496 |
| 9108 | | -0.91263639 0.40877231 0.00018814 240.52859413 |
| 9109 | | 0.00016577 -0.00009014 0.99999999 30.13976421 |
| 9110 | | Axis -0.00015246 -0.00008287 -0.99999998 |
| 9111 | | Axis point 177.40917383 132.97081684 0.00000000 |
| 9112 | | Rotation angle (degrees) 65.87226369 |
| 9113 | | Shift along axis -30.15718633 |
| 9114 | | |
| 9115 | | |
| 9116 | | > fitmap #10 inMap #1 |
| 9117 | | |
| 9118 | | Fit map N55H_POPE_C6_P58_J139_004_volume_map_sharp.mrc in map |
| 9119 | | WT_PIP2_P68_J150_009_volume_map.mrc using 36934 points |
| 9120 | | correlation = 0.8863, correlation about mean = 0.4119, overlap = 9897 |
| 9121 | | steps = 92, shift = 8.59, angle = 4.99 degrees |
| 9122 | | |
| 9123 | | Position of N55H_POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) relative to |
| 9124 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9125 | | Matrix rotation and translation |
| 9126 | | 0.40781172 0.91306605 -0.00003523 -16.37612283 |
| 9127 | | -0.91306604 0.40781172 -0.00011985 240.74713954 |
| 9128 | | -0.00009507 0.00008105 1.00000000 30.25073311 |
| 9129 | | Axis 0.00011002 0.00003277 -0.99999999 |
| 9130 | | Axis point 177.41246647 132.99627023 0.00000000 |
| 9131 | | Rotation angle (degrees) 65.93255577 |
| 9132 | | Shift along axis -30.24464639 |
| 9133 | | |
| 9134 | | |
| 9135 | | > select clear |
| 9136 | | |
| 9137 | | > hide #!10 models |
| 9138 | | |
| 9139 | | > show #!10 models |
| 9140 | | |
| 9141 | | > hide #!10 models |
| 9142 | | |
| 9143 | | > show #!10 models |
| 9144 | | |
| 9145 | | > hide #!10 models |
| 9146 | | |
| 9147 | | > show #!10 models |
| 9148 | | |
| 9149 | | > hide #!10 models |
| 9150 | | |
| 9151 | | > show #!10 models |
| 9152 | | |
| 9153 | | > hide #!10 models |
| 9154 | | |
| 9155 | | > show #!11 models |
| 9156 | | |
| 9157 | | > volume #11 level 0.3969 |
| 9158 | | |
| 9159 | | > volume #12 level 0.5738 |
| 9160 | | |
| 9161 | | > hide #!9 models |
| 9162 | | |
| 9163 | | > show #!9 models |
| 9164 | | |
| 9165 | | > hide #!9 models |
| 9166 | | |
| 9167 | | > hide #!7 models |
| 9168 | | |
| 9169 | | > show #!1 models |
| 9170 | | |
| 9171 | | > select add #11 |
| 9172 | | |
| 9173 | | 2 models selected |
| 9174 | | |
| 9175 | | > volume #1 level 0.1232 |
| 9176 | | |
| 9177 | | > view matrix models #11,1,0,0,-1.812,0,1,0,-2.1757,0,0,1,-99.584 |
| 9178 | | |
| 9179 | | > ui mousemode right "rotate selected models" |
| 9180 | | |
| 9181 | | > view matrix models |
| 9182 | | > #11,-0.83034,0.55005,-0.089292,191.72,0.48927,0.79632,0.35564,-95.245,0.26673,0.25162,-0.93035,114.33 |
| 9183 | | |
| 9184 | | > view matrix models |
| 9185 | | > #11,-0.82989,0.55031,0.091836,164.7,0.55297,0.78941,0.26658,-90.002,0.074204,0.27201,-0.95943,142.89 |
| 9186 | | |
| 9187 | | > ui mousemode right "rotate selected models" |
| 9188 | | |
| 9189 | | > view matrix models |
| 9190 | | > #11,-0.90721,0.38715,0.1646,187.75,0.41221,0.8962,0.16406,-69.983,-0.084002,0.21668,-0.97262,174.92 |
| 9191 | | |
| 9192 | | > ui mousemode right "translate selected models" |
| 9193 | | |
| 9194 | | > view matrix models |
| 9195 | | > #11,-0.90721,0.38715,0.1646,159.25,0.41221,0.8962,0.16406,-93.449,-0.084002,0.21668,-0.97262,220.86 |
| 9196 | | |
| 9197 | | > view matrix models |
| 9198 | | > #11,-0.90721,0.38715,0.1646,157.82,0.41221,0.8962,0.16406,-97.959,-0.084002,0.21668,-0.97262,221.04 |
| 9199 | | |
| 9200 | | > fitmap #11 inMap #1 |
| 9201 | | |
| 9202 | | Fit map N55H_POPE_C2_P58_J151_004_volume_map.mrc in map |
| 9203 | | WT_PIP2_P68_J150_009_volume_map.mrc using 62015 points |
| 9204 | | correlation = 0.7958, correlation about mean = 0.3491, overlap = 5144 |
| 9205 | | steps = 228, shift = 2.1, angle = 26.9 degrees |
| 9206 | | |
| 9207 | | Position of N55H_POPE_C2_P58_J151_004_volume_map.mrc (#11) relative to |
| 9208 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9209 | | Matrix rotation and translation |
| 9210 | | 0.47291422 0.88110847 -0.00009613 -21.03134436 |
| 9211 | | 0.88110846 -0.47291422 -0.00007861 112.13161583 |
| 9212 | | -0.00011472 -0.00004753 -0.99999999 314.73122979 |
| 9213 | | Axis 0.85826414 0.51320821 -0.00008484 |
| 9214 | | Axis point 0.00000000 62.35210624 157.36506009 |
| 9215 | | Rotation angle (degrees) 179.99896243 |
| 9216 | | Shift along axis 39.46971640 |
| 9217 | | |
| 9218 | | |
| 9219 | | > fitmap #11 inMap #1 |
| 9220 | | |
| 9221 | | Fit map N55H_POPE_C2_P58_J151_004_volume_map.mrc in map |
| 9222 | | WT_PIP2_P68_J150_009_volume_map.mrc using 62015 points |
| 9223 | | correlation = 0.7958, correlation about mean = 0.3491, overlap = 5144 |
| 9224 | | steps = 24, shift = 0.0032, angle = 0.0236 degrees |
| 9225 | | |
| 9226 | | Position of N55H_POPE_C2_P58_J151_004_volume_map.mrc (#11) relative to |
| 9227 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9228 | | Matrix rotation and translation |
| 9229 | | 0.47296324 0.88108216 0.00005720 -21.05803408 |
| 9230 | | 0.88108211 -0.47296323 0.00029930 112.08402861 |
| 9231 | | 0.00029077 -0.00009116 -0.99999996 314.68247501 |
| 9232 | | Axis -0.85817764 -0.51335283 -0.00010323 |
| 9233 | | Axis point 0.00000000 62.36121640 157.33641962 |
| 9234 | | Rotation angle (degrees) 179.98696528 |
| 9235 | | Shift along axis -39.49960319 |
| 9236 | | |
| 9237 | | |
| 9238 | | > fitmap #11 inMap #1 |
| 9239 | | |
| 9240 | | Fit map N55H_POPE_C2_P58_J151_004_volume_map.mrc in map |
| 9241 | | WT_PIP2_P68_J150_009_volume_map.mrc using 62015 points |
| 9242 | | correlation = 0.7958, correlation about mean = 0.3491, overlap = 5144 |
| 9243 | | steps = 24, shift = 0.00353, angle = 0.0161 degrees |
| 9244 | | |
| 9245 | | Position of N55H_POPE_C2_P58_J151_004_volume_map.mrc (#11) relative to |
| 9246 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9247 | | Matrix rotation and translation |
| 9248 | | 0.47287464 0.88112971 0.00008749 -21.05659220 |
| 9249 | | 0.88112955 -0.47287461 0.00056058 112.02267496 |
| 9250 | | 0.00053532 -0.00018799 -0.99999984 314.66106472 |
| 9251 | | Axis -0.85815538 -0.51339002 -0.00018241 |
| 9252 | | Axis point 0.00000000 62.34985300 157.32111320 |
| 9253 | | Rotation angle (degrees) 179.97501047 |
| 9254 | | Shift along axis -39.49889255 |
| 9255 | | |
| 9256 | | |
| 9257 | | > select add #12 |
| 9258 | | |
| 9259 | | 4 models selected |
| 9260 | | |
| 9261 | | > select subtract #11 |
| 9262 | | |
| 9263 | | 2 models selected |
| 9264 | | |
| 9265 | | > view matrix models #12,1,0,0,-42.098,0,1,0,51.193,0,0,1,-54.94 |
| 9266 | | |
| 9267 | | > ui mousemode right "rotate selected models" |
| 9268 | | |
| 9269 | | > view matrix models |
| 9270 | | > #12,-0.93262,-0.015062,0.36056,178.32,-0.23686,0.77934,-0.58011,202.19,-0.27226,-0.62642,-0.73039,329.84 |
| 9271 | | |
| 9272 | | > view matrix models |
| 9273 | | > #12,-0.88284,-0.45953,0.097047,273.22,-0.46951,0.86881,-0.15724,159.24,-0.012057,-0.18439,-0.98278,268.64 |
| 9274 | | |
| 9275 | | > view matrix models |
| 9276 | | > #12,-0.88152,-0.46593,-0.076302,299.81,-0.46169,0.8845,-0.06718,142.49,0.09879,-0.023993,-0.99482,232.24 |
| 9277 | | |
| 9278 | | > view matrix models |
| 9279 | | > #12,-0.68232,-0.37191,-0.62938,341.07,-0.39981,0.9106,-0.10465,135.69,0.61204,0.18023,-0.77002,97.675 |
| 9280 | | |
| 9281 | | > ui mousemode right "translate selected models" |
| 9282 | | |
| 9283 | | > view matrix models |
| 9284 | | > #12,-0.68232,-0.37191,-0.62938,356.61,-0.39981,0.9106,-0.10465,52.559,0.61204,0.18023,-0.77002,108.01 |
| 9285 | | |
| 9286 | | > ui mousemode right "rotate selected models" |
| 9287 | | |
| 9288 | | > view matrix models |
| 9289 | | > #12,-0.79949,-0.59033,-0.11102,326.5,-0.59843,0.79876,0.062196,71.372,0.05196,0.11616,-0.99187,229 |
| 9290 | | |
| 9291 | | > fitmap #12 inMap #1 |
| 9292 | | |
| 9293 | | Fit map N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc in map |
| 9294 | | WT_PIP2_P68_J150_009_volume_map.mrc using 60925 points |
| 9295 | | correlation = 0.6371, correlation about mean = 0.08177, overlap = 5462 |
| 9296 | | steps = 84, shift = 5.08, angle = 7.31 degrees |
| 9297 | | |
| 9298 | | Position of N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc (#12) relative to |
| 9299 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9300 | | Matrix rotation and translation |
| 9301 | | -0.81866939 0.57340622 0.03139652 201.57314020 |
| 9302 | | 0.56201085 0.78876723 0.24897806 -62.89701946 |
| 9303 | | 0.11800102 0.22147591 -0.96800010 267.41680881 |
| 9304 | | Axis -0.30031340 -0.94568928 -0.12443327 |
| 9305 | | Axis point 107.58640960 0.00000000 140.16278109 |
| 9306 | | Rotation angle (degrees) 177.37556104 |
| 9307 | | Shift along axis -34.32962586 |
| 9308 | | |
| 9309 | | |
| 9310 | | > view matrix models |
| 9311 | | > #12,-0.95982,-0.22242,-0.17108,306.1,-0.23089,0.97248,0.031101,-0.18635,0.15946,0.069354,-0.98477,214.33 |
| 9312 | | |
| 9313 | | > fitmap #12 inMap #1 |
| 9314 | | |
| 9315 | | Fit map N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc in map |
| 9316 | | WT_PIP2_P68_J150_009_volume_map.mrc using 60925 points |
| 9317 | | correlation = 0.7905, correlation about mean = 0.3902, overlap = 8881 |
| 9318 | | steps = 120, shift = 7.97, angle = 9.99 degrees |
| 9319 | | |
| 9320 | | Position of N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc (#12) relative to |
| 9321 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9322 | | Matrix rotation and translation |
| 9323 | | -0.52571249 0.85066225 0.00035241 123.78995881 |
| 9324 | | 0.85066221 0.52571217 0.00071906 -24.30442978 |
| 9325 | | 0.00042641 0.00067780 -0.99999968 314.23055756 |
| 9326 | | Axis -0.48692116 -0.87344583 -0.00039378 |
| 9327 | | Axis point 68.66568299 0.00000000 157.12202710 |
| 9328 | | Rotation angle (degrees) 179.99757277 |
| 9329 | | Shift along axis -39.17108455 |
| 9330 | | |
| 9331 | | |
| 9332 | | > hide #!1 models |
| 9333 | | |
| 9334 | | > volume #12 level 1.031 |
| 9335 | | |
| 9336 | | > hide #!12 models |
| 9337 | | |
| 9338 | | > show #!12 models |
| 9339 | | |
| 9340 | | > hide #!11 models |
| 9341 | | |
| 9342 | | > show #!11 models |
| 9343 | | |
| 9344 | | > hide #!11 models |
| 9345 | | |
| 9346 | | > show #!11 models |
| 9347 | | |
| 9348 | | > hide #!11 models |
| 9349 | | |
| 9350 | | > show #!11 models |
| 9351 | | |
| 9352 | | > view matrix models |
| 9353 | | > #12,-0.98416,-0.1763,0.018707,269.16,-0.17625,0.98434,0.0043907,-5.892,-0.019188,0.0010241,-0.99982,245.75 |
| 9354 | | |
| 9355 | | > ui mousemode right "translate selected models" |
| 9356 | | |
| 9357 | | > view matrix models |
| 9358 | | > #12,-0.98416,-0.1763,0.018707,268.16,-0.17625,0.98434,0.0043907,-5.1865,-0.019188,0.0010241,-0.99982,240.89 |
| 9359 | | |
| 9360 | | > fitmap #12 inMap #1 |
| 9361 | | |
| 9362 | | Fit map N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc in map |
| 9363 | | WT_PIP2_P68_J150_009_volume_map.mrc using 28800 points |
| 9364 | | correlation = 0.8142, correlation about mean = 0.3067, overlap = 6964 |
| 9365 | | steps = 88, shift = 4.93, angle = 2.72 degrees |
| 9366 | | |
| 9367 | | Position of N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc (#12) relative to |
| 9368 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9369 | | Matrix rotation and translation |
| 9370 | | -0.52560458 0.85072899 -0.00013292 123.84850017 |
| 9371 | | 0.85072899 0.52560459 0.00006149 -24.20616178 |
| 9372 | | 0.00012218 -0.00008075 -0.99999999 314.30337194 |
| 9373 | | Axis -0.48701413 -0.87339409 0.00000720 |
| 9374 | | Axis point 68.65992225 0.00000000 157.15596584 |
| 9375 | | Rotation angle (degrees) 179.99163258 |
| 9376 | | Shift along axis -39.17218753 |
| 9377 | | |
| 9378 | | |
| 9379 | | > fitmap #12 inMap #1 |
| 9380 | | |
| 9381 | | Fit map N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc in map |
| 9382 | | WT_PIP2_P68_J150_009_volume_map.mrc using 28800 points |
| 9383 | | correlation = 0.8141, correlation about mean = 0.3066, overlap = 6964 |
| 9384 | | steps = 48, shift = 0.0198, angle = 0.0108 degrees |
| 9385 | | |
| 9386 | | Position of N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc (#12) relative to |
| 9387 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9388 | | Matrix rotation and translation |
| 9389 | | -0.52569534 0.85067291 0.00000428 123.83458467 |
| 9390 | | 0.85067291 0.52569535 -0.00001073 -24.18586712 |
| 9391 | | -0.00001138 -0.00000200 -1.00000000 314.31107552 |
| 9392 | | Axis 0.48723283 0.87327210 0.00002378 |
| 9393 | | Axis point 68.66522185 0.00000000 157.15559831 |
| 9394 | | Rotation angle (degrees) 179.99948646 |
| 9395 | | Shift along axis 39.22290623 |
| 9396 | | |
| 9397 | | |
| 9398 | | > fitmap #12 inMap #1 |
| 9399 | | |
| 9400 | | Fit map N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc in map |
| 9401 | | WT_PIP2_P68_J150_009_volume_map.mrc using 28800 points |
| 9402 | | correlation = 0.8142, correlation about mean = 0.3068, overlap = 6964 |
| 9403 | | steps = 44, shift = 0.00322, angle = 0.026 degrees |
| 9404 | | |
| 9405 | | Position of N55H_POPE_C2_P58_J151_004_volume_map_sharp.mrc (#12) relative to |
| 9406 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 9407 | | Matrix rotation and translation |
| 9408 | | -0.52554464 0.85076599 0.00025590 123.76050051 |
| 9409 | | 0.85076592 0.52554470 -0.00034324 -24.12464091 |
| 9410 | | -0.00042650 0.00003733 -0.99999991 314.36398442 |
| 9411 | | Axis 0.48706595 0.87336519 -0.00008694 |
| 9412 | | Axis point 68.64242627 0.00000000 157.16908566 |
| 9413 | | Rotation angle (degrees) 179.97761619 |
| 9414 | | Shift along axis 39.18257426 |
| 9415 | | |
| 9416 | | |
| 9417 | | > hide #!12 models |
| 9418 | | |
| 9419 | | > show #!12 models |
| 9420 | | |
| 9421 | | > hide #!11 models |
| 9422 | | |
| 9423 | | > volume #12 level 0.558 |
| 9424 | | |
| 9425 | | > show #!11 models |
| 9426 | | |
| 9427 | | > hide #!12 models |
| 9428 | | |
| 9429 | | > show #!12 models |
| 9430 | | |
| 9431 | | > hide #!11 models |
| 9432 | | |
| 9433 | | > volume #12 level 0.8101 |
| 9434 | | |
| 9435 | | > show #!11 models |
| 9436 | | |
| 9437 | | > hide #!12 models |
| 9438 | | |
| 9439 | | > show #!13 models |
| 9440 | | |
| 9441 | | > show #!14 models |
| 9442 | | |
| 9443 | | > hide #!14 models |
| 9444 | | |
| 9445 | | > show #!12 models |
| 9446 | | |
| 9447 | | > hide #!11 models |
| 9448 | | |
| 9449 | | > hide #!12 models |
| 9450 | | |
| 9451 | | > hide #!13 models |
| 9452 | | |
| 9453 | | > show #!12 models |
| 9454 | | |
| 9455 | | > show #!11 models |
| 9456 | | |
| 9457 | | > hide #!12 models |
| 9458 | | |
| 9459 | | > show #!15 models |
| 9460 | | |
| 9461 | | > hide #!11 models |
| 9462 | | |
| 9463 | | > volume #16 level 0.3389 |
| 9464 | | |
| 9465 | | > show #!12 models |
| 9466 | | |
| 9467 | | > hide #!12 models |
| 9468 | | |
| 9469 | | > save "C:/Users/OJS/OneDrive - |
| 9470 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 9471 | | |
| 9472 | | > hide #!15 models |
| 9473 | | |
| 9474 | | > hide #!16 models |
| 9475 | | |
| 9476 | | > show #!9 models |
| 9477 | | |
| 9478 | | > volume #9 level 0.3437 |
| 9479 | | |
| 9480 | | > volume #9 level 0.2579 |
| 9481 | | |
| 9482 | | > volume #9 level 0.3294 |
| 9483 | | |
| 9484 | | > show #!10 models |
| 9485 | | |
| 9486 | | > hide #!9 models |
| 9487 | | |
| 9488 | | > volume #10 level 0.5672 |
| 9489 | | |
| 9490 | | > open |
| 9491 | | > C:/Users/OJS/Desktop/Phenix/230725_Cx43_N55H_POPE/RealSpaceRefine_27/231009_From25_real_space_refined_027.pdb |
| 9492 | | |
| 9493 | | Chain information for 231009_From25_real_space_refined_027.pdb #21 |
| 9494 | | --- |
| 9495 | | Chain | Description |
| 9496 | | A B C D E F | No description available |
| 9497 | | |
| 9498 | | |
| 9499 | | > select add #21 |
| 9500 | | |
| 9501 | | 8706 atoms, 8964 bonds, 6 pseudobonds, 1062 residues, 4 models selected |
| 9502 | | |
| 9503 | | > hide sel atoms |
| 9504 | | |
| 9505 | | > show sel cartoons |
| 9506 | | |
| 9507 | | > color #21 #55ffffff |
| 9508 | | |
| 9509 | | > ui mousemode right "rotate selected models" |
| 9510 | | |
| 9511 | | > ui mousemode right "translate selected models" |
| 9512 | | |
| 9513 | | > view matrix models |
| 9514 | | > #12,-0.9758,-0.21867,0.00039818,227.55,-0.21867,0.9758,8.2084e-05,-17.604,-0.00040649,-6.9711e-06,-1,202.86,#21,1,0,0,-49.101,0,1,0,-19.525,0,0,1,-40.338 |
| 9515 | | |
| 9516 | | > view matrix models |
| 9517 | | > #12,-0.9758,-0.21867,0.00039818,244.35,-0.21867,0.9758,8.2084e-05,-29.018,-0.00040649,-6.9711e-06,-1,195.32,#21,1,0,0,-32.3,0,1,0,-30.939,0,0,1,-47.882 |
| 9518 | | |
| 9519 | | > hide #!10 models |
| 9520 | | |
| 9521 | | > show #!20 models |
| 9522 | | |
| 9523 | | > view matrix models |
| 9524 | | > #12,-0.9758,-0.21867,0.00039818,244.97,-0.21867,0.9758,8.2084e-05,-30.095,-0.00040649,-6.9711e-06,-1,202.27,#21,1,0,0,-31.683,0,1,0,-32.016,0,0,1,-40.932 |
| 9525 | | |
| 9526 | | > ui mousemode right "rotate selected models" |
| 9527 | | |
| 9528 | | > view matrix models |
| 9529 | | > #12,-0.73851,-0.64935,0.18152,273.56,-0.61865,0.75965,0.20051,26.235,-0.26809,0.03578,-0.96273,219.95,#21,0.8627,-0.47213,-0.18121,79.871,0.43765,0.87656,-0.20026,-47.823,0.25339,0.093457,0.96284,-84.498 |
| 9530 | | |
| 9531 | | > view matrix models |
| 9532 | | > #12,-0.44589,-0.85395,-0.26823,322.93,-0.82583,0.50806,-0.2447,133.98,0.34524,0.1124,-0.93176,141.47,#21,0.62172,-0.73581,0.26842,87.058,0.69465,0.67633,0.24503,-119.09,-0.36184,0.034112,0.93162,14.94 |
| 9533 | | |
| 9534 | | > view matrix models |
| 9535 | | > #12,-0.042345,-0.99023,-0.13287,290.51,-0.99829,0.036571,0.0456,200.16,-0.040295,0.13457,-0.99008,183.11,#21,0.2578,-0.95702,0.13289,188.71,0.96615,0.25398,-0.045194,-56.628,0.0094996,0.14004,0.9901,-60.581 |
| 9536 | | |
| 9537 | | > view matrix models |
| 9538 | | > #12,0.64273,-0.6971,0.31772,126.51,-0.7608,-0.62948,0.15792,274.57,0.089913,-0.34322,-0.93494,243.16,#21,-0.47461,-0.82075,-0.31798,336.73,0.8801,-0.44787,-0.1576,70.279,-0.013058,-0.35465,0.93491,20.088 |
| 9539 | | |
| 9540 | | > view matrix models |
| 9541 | | > #12,0.72192,-0.66497,0.19144,125.88,-0.6862,-0.72364,0.074057,290.98,0.089286,-0.18483,-0.97871,221.48,#21,-0.55896,-0.80672,-0.19173,328.7,0.82785,-0.55607,-0.073773,80.961,-0.047099,-0.19996,0.97867,-3.1151 |
| 9542 | | |
| 9543 | | > view matrix models |
| 9544 | | > #12,0.65181,-0.7487,0.12079,154.02,-0.75799,-0.64825,0.072226,286.05,0.024226,-0.13863,-0.99005,221.65,#21,-0.47228,-0.8731,-0.12105,315.79,0.88143,-0.46681,-0.071914,60.585,0.0062815,-0.14066,0.99004,-20.597 |
| 9545 | | |
| 9546 | | > fitmap #21 inMap #10 |
| 9547 | | |
| 9548 | | Fit molecule 231009_From25_real_space_refined_027.pdb (#21) to map |
| 9549 | | N55H_POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) using 8706 atoms |
| 9550 | | average map value = 1.103, steps = 84 |
| 9551 | | shifted from previous position = 1.33 |
| 9552 | | rotated from previous position = 10.6 degrees |
| 9553 | | atoms outside contour = 2389, contour level = 0.56725 |
| 9554 | | |
| 9555 | | Position of 231009_From25_real_space_refined_027.pdb (#21) relative to |
| 9556 | | N55H_POPE_C6_P58_J139_004_volume_map_sharp.mrc (#10) coordinates: |
| 9557 | | Matrix rotation and translation |
| 9558 | | -0.50003754 -0.86600346 0.00068022 333.04652030 |
| 9559 | | 0.86600361 -0.50003772 -0.00010983 89.29271650 |
| 9560 | | 0.00043525 0.00053415 0.99999976 -0.18267864 |
| 9561 | | Axis 0.00037181 0.00014144 0.99999992 |
| 9562 | | Axis point 140.74800078 140.78379317 0.00000000 |
| 9563 | | Rotation angle (degrees) 120.00249780 |
| 9564 | | Shift along axis -0.04621835 |
| 9565 | | |
| 9566 | | |
| 9567 | | > select clear |
| 9568 | | |
| 9569 | | > show #!18 models |
| 9570 | | |
| 9571 | | > hide #!20 models |
| 9572 | | |
| 9573 | | > morph #18,21 |
| 9574 | | |
| 9575 | | Computed 51 frame morph #22 |
| 9576 | | |
| 9577 | | > coordset #22 1,51 |
| 9578 | | |
| 9579 | | > morph #21,19 |
| 9580 | | |
| 9581 | | Computed 51 frame morph #23 |
| 9582 | | |
| 9583 | | > coordset #23 1,51 |
| 9584 | | |
| 9585 | | > close #23 |
| 9586 | | |
| 9587 | | > close #22 |
| 9588 | | |
| 9589 | | > morph #21,18 |
| 9590 | | |
| 9591 | | Computed 51 frame morph #22 |
| 9592 | | |
| 9593 | | > coordset #22 1,51 |
| 9594 | | |
| 9595 | | > morph #21,18,20,17 |
| 9596 | | |
| 9597 | | Computed 151 frame morph #23 |
| 9598 | | |
| 9599 | | > coordset #23 1,151 |
| 9600 | | |
| 9601 | | > close #22 |
| 9602 | | |
| 9603 | | > morph #21,17 |
| 9604 | | |
| 9605 | | Computed 51 frame morph #22 |
| 9606 | | |
| 9607 | | > coordset #22 1,51 |
| 9608 | | |
| 9609 | | > hide #!22 models |
| 9610 | | |
| 9611 | | > show #!22 models |
| 9612 | | |
| 9613 | | > hide #!23 models |
| 9614 | | |
| 9615 | | > hide #!22 models |
| 9616 | | |
| 9617 | | > close #22 |
| 9618 | | |
| 9619 | | > close #23 |
| 9620 | | |
| 9621 | | > show #!21 models |
| 9622 | | |
| 9623 | | > select #21:200 |
| 9624 | | |
| 9625 | | 48 atoms, 42 bonds, 6 residues, 1 model selected |
| 9626 | | |
| 9627 | | > ui tool show "Selection Inspector" |
| 9628 | | |
| 9629 | | > setattr sel r ss_type 0 |
| 9630 | | |
| 9631 | | Assigning ss_type attribute to 6 items |
| 9632 | | |
| 9633 | | > ui tool show "Selection Inspector" |
| 9634 | | |
| 9635 | | > select #21:196-200 |
| 9636 | | |
| 9637 | | 240 atoms, 240 bonds, 30 residues, 1 model selected |
| 9638 | | |
| 9639 | | > ui tool show "Selection Inspector" |
| 9640 | | |
| 9641 | | > setattr sel r ss_type 0 |
| 9642 | | |
| 9643 | | Assigning ss_type attribute to 30 items |
| 9644 | | |
| 9645 | | > setattr sel r ss_type 2 |
| 9646 | | |
| 9647 | | Assigning ss_type attribute to 30 items |
| 9648 | | |
| 9649 | | > setattr sel r ss_type 0 |
| 9650 | | |
| 9651 | | Assigning ss_type attribute to 30 items |
| 9652 | | |
| 9653 | | > select down |
| 9654 | | |
| 9655 | | 240 atoms, 240 bonds, 30 residues, 1 model selected |
| 9656 | | |
| 9657 | | > select #21:196-199 |
| 9658 | | |
| 9659 | | 192 atoms, 192 bonds, 24 residues, 1 model selected |
| 9660 | | |
| 9661 | | > ui tool show "Selection Inspector" |
| 9662 | | |
| 9663 | | > setattr sel r ss_type 2 |
| 9664 | | |
| 9665 | | Assigning ss_type attribute to 24 items |
| 9666 | | |
| 9667 | | > select clear |
| 9668 | | |
| 9669 | | > select #21:196-200 |
| 9670 | | |
| 9671 | | 240 atoms, 240 bonds, 30 residues, 1 model selected |
| 9672 | | |
| 9673 | | > ui tool show "Selection Inspector" |
| 9674 | | |
| 9675 | | > setattr sel r ss_type 2 |
| 9676 | | |
| 9677 | | Assigning ss_type attribute to 30 items |
| 9678 | | |
| 9679 | | > select clear |
| 9680 | | |
| 9681 | | > save "C:/Users/OJS/OneDrive - |
| 9682 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 9683 | | |
| 9684 | | > select :196-200 |
| 9685 | | |
| 9686 | | 1680 atoms, 1680 bonds, 210 residues, 7 models selected |
| 9687 | | |
| 9688 | | > ui tool show "Selection Inspector" |
| 9689 | | |
| 9690 | | > setattr sel r ss_id 1 |
| 9691 | | |
| 9692 | | Assigning ss_id attribute to 210 items |
| 9693 | | |
| 9694 | | > setattr sel r ss_type 2 |
| 9695 | | |
| 9696 | | Assigning ss_type attribute to 210 items |
| 9697 | | |
| 9698 | | > hide #!21 models |
| 9699 | | |
| 9700 | | > show #!20 models |
| 9701 | | |
| 9702 | | > hide #!20 models |
| 9703 | | |
| 9704 | | > show #!20 models |
| 9705 | | |
| 9706 | | > show #!19 models |
| 9707 | | |
| 9708 | | > show #!18 models |
| 9709 | | |
| 9710 | | > show #!17 models |
| 9711 | | |
| 9712 | | > show #!21 models |
| 9713 | | |
| 9714 | | > select :52-55 |
| 9715 | | |
| 9716 | | 1548 atoms, 1566 bonds, 168 residues, 7 models selected |
| 9717 | | |
| 9718 | | > select :52-54 |
| 9719 | | |
| 9720 | | 1176 atoms, 1176 bonds, 126 residues, 7 models selected |
| 9721 | | |
| 9722 | | > select :52-53 |
| 9723 | | |
| 9724 | | 924 atoms, 924 bonds, 84 residues, 7 models selected |
| 9725 | | |
| 9726 | | > hide #!18 models |
| 9727 | | |
| 9728 | | > hide #!19 models |
| 9729 | | |
| 9730 | | > hide #!20 models |
| 9731 | | |
| 9732 | | > hide #!21 models |
| 9733 | | |
| 9734 | | > show #!21 models |
| 9735 | | |
| 9736 | | > select :52-54 |
| 9737 | | |
| 9738 | | 1176 atoms, 1176 bonds, 126 residues, 7 models selected |
| 9739 | | |
| 9740 | | > ui tool show "Selection Inspector" |
| 9741 | | |
| 9742 | | > setattr sel r ss_type 2 |
| 9743 | | |
| 9744 | | Assigning ss_type attribute to 126 items |
| 9745 | | |
| 9746 | | > setattr sel r ss_id 1 |
| 9747 | | |
| 9748 | | Assigning ss_id attribute to 126 items |
| 9749 | | |
| 9750 | | > hide #!21 models |
| 9751 | | |
| 9752 | | > show #!18 models |
| 9753 | | |
| 9754 | | > show #!19 models |
| 9755 | | |
| 9756 | | > hide #!18 models |
| 9757 | | |
| 9758 | | > hide #!17 models |
| 9759 | | |
| 9760 | | > show #!20 models |
| 9761 | | |
| 9762 | | > hide #!20 models |
| 9763 | | |
| 9764 | | > show #!20 models |
| 9765 | | |
| 9766 | | > show #!21 models |
| 9767 | | |
| 9768 | | > select clear |
| 9769 | | |
| 9770 | | > show #!18 models |
| 9771 | | |
| 9772 | | > show #!17 models |
| 9773 | | |
| 9774 | | > hide #!21 models |
| 9775 | | |
| 9776 | | > hide #!20 models |
| 9777 | | |
| 9778 | | > hide #!17 models |
| 9779 | | |
| 9780 | | > hide #!19 models |
| 9781 | | |
| 9782 | | > show #!19 models |
| 9783 | | |
| 9784 | | > show #!21 models |
| 9785 | | |
| 9786 | | > hide #!21 models |
| 9787 | | |
| 9788 | | > hide #!19 models |
| 9789 | | |
| 9790 | | > select add #18 |
| 9791 | | |
| 9792 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 9793 | | |
| 9794 | | > mlp sel |
| 9795 | | |
| 9796 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 9797 | | mean 0.2399, maximum 23.77 |
| 9798 | | Map values for surface "230904_Chol_HC_150.pdb_B SES surface": minimum -28.02, |
| 9799 | | mean 0.1571, maximum 25.31 |
| 9800 | | Map values for surface "230904_Chol_HC_150.pdb_C SES surface": minimum -27.97, |
| 9801 | | mean 0.1452, maximum 24.75 |
| 9802 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.84, |
| 9803 | | mean 0.223, maximum 24.9 |
| 9804 | | Map values for surface "230904_Chol_HC_150.pdb_E SES surface": minimum -27.89, |
| 9805 | | mean 0.1406, maximum 24.79 |
| 9806 | | Map values for surface "230904_Chol_HC_150.pdb_F SES surface": minimum -27.69, |
| 9807 | | mean 0.1485, maximum 25.26 |
| 9808 | | To also show corresponding color key, enter the above mlp command and add key |
| 9809 | | true |
| 9810 | | |
| 9811 | | > select clear |
| 9812 | | |
| 9813 | | > hide #!18 models |
| 9814 | | |
| 9815 | | > show #!17 models |
| 9816 | | |
| 9817 | | > mlp #!17 |
| 9818 | | |
| 9819 | | Map values for surface "231006_PIP2_HC_90.pdb_A SES surface": minimum -27.87, |
| 9820 | | mean 0.03369, maximum 24.9 |
| 9821 | | Map values for surface "231006_PIP2_HC_90.pdb_B SES surface": minimum -27.78, |
| 9822 | | mean 0.02849, maximum 26.04 |
| 9823 | | Map values for surface "231006_PIP2_HC_90.pdb_C SES surface": minimum -28.51, |
| 9824 | | mean -0.003208, maximum 23.51 |
| 9825 | | Map values for surface "231006_PIP2_HC_90.pdb_D SES surface": minimum -27.99, |
| 9826 | | mean 0.03851, maximum 26.17 |
| 9827 | | Map values for surface "231006_PIP2_HC_90.pdb_E SES surface": minimum -27.97, |
| 9828 | | mean 0.03483, maximum 25.07 |
| 9829 | | Map values for surface "231006_PIP2_HC_90.pdb_F SES surface": minimum -27.97, |
| 9830 | | mean -0.01962, maximum 23.57 |
| 9831 | | To also show corresponding color key, enter the above mlp command and add key |
| 9832 | | true |
| 9833 | | |
| 9834 | | > show #!18 models |
| 9835 | | |
| 9836 | | > hide #!17 models |
| 9837 | | |
| 9838 | | > show #!19 models |
| 9839 | | |
| 9840 | | > hide #!18 models |
| 9841 | | |
| 9842 | | > color bfactor #!19 |
| 9843 | | |
| 9844 | | 8634 atoms, 1020 residues, 6 surfaces, atom bfactor range 96.3 to 171 |
| 9845 | | |
| 9846 | | > mlp #!19 |
| 9847 | | |
| 9848 | | Map values for surface "230926_CBX_HC_181.pdb_A SES surface": minimum -27.57, |
| 9849 | | mean 0.8045, maximum 24.47 |
| 9850 | | Map values for surface "230926_CBX_HC_181.pdb_B SES surface": minimum -26.7, |
| 9851 | | mean 0.8385, maximum 24.42 |
| 9852 | | Map values for surface "230926_CBX_HC_181.pdb_C SES surface": minimum -28.15, |
| 9853 | | mean 0.8719, maximum 24.27 |
| 9854 | | Map values for surface "230926_CBX_HC_181.pdb_D SES surface": minimum -27.92, |
| 9855 | | mean 0.8499, maximum 24.31 |
| 9856 | | Map values for surface "230926_CBX_HC_181.pdb_E SES surface": minimum -27.7, |
| 9857 | | mean 0.8051, maximum 24.33 |
| 9858 | | Map values for surface "230926_CBX_HC_181.pdb_F SES surface": minimum -28.95, |
| 9859 | | mean 0.8538, maximum 24.25 |
| 9860 | | To also show corresponding color key, enter the above mlp command and add key |
| 9861 | | true |
| 9862 | | |
| 9863 | | > hide #!19 models |
| 9864 | | |
| 9865 | | > show #!18 models |
| 9866 | | |
| 9867 | | > hide #!18 models |
| 9868 | | |
| 9869 | | > show #!18 models |
| 9870 | | |
| 9871 | | > show #!17 models |
| 9872 | | |
| 9873 | | > hide #!18 models |
| 9874 | | |
| 9875 | | > show #!18 models |
| 9876 | | |
| 9877 | | > hide #!17 models |
| 9878 | | |
| 9879 | | > show #!19 models |
| 9880 | | |
| 9881 | | > hide #!18 models |
| 9882 | | |
| 9883 | | > hide #!19 models |
| 9884 | | |
| 9885 | | > show #!19 models |
| 9886 | | |
| 9887 | | > hide #!19 surfaces |
| 9888 | | |
| 9889 | | > select #19 |
| 9890 | | |
| 9891 | | 8634 atoms, 8916 bonds, 6 pseudobonds, 1020 residues, 2 models selected |
| 9892 | | |
| 9893 | | > color #19 #aa55ffff |
| 9894 | | |
| 9895 | | > select clear |
| 9896 | | |
| 9897 | | > select ::name="CBO" |
| 9898 | | |
| 9899 | | 246 atoms, 270 bonds, 6 residues, 1 model selected |
| 9900 | | |
| 9901 | | > color sel dark green |
| 9902 | | |
| 9903 | | > color sel byhetero |
| 9904 | | |
| 9905 | | > select clear |
| 9906 | | |
| 9907 | | > show #!18 models |
| 9908 | | |
| 9909 | | > hide #!18-19 surfaces |
| 9910 | | |
| 9911 | | > select #19:203:235 |
| 9912 | | |
| 9913 | | 42 atoms, 42 bonds, 6 residues, 1 model selected |
| 9914 | | |
| 9915 | | > select #19:203-235 |
| 9916 | | |
| 9917 | | 1536 atoms, 1572 bonds, 186 residues, 1 model selected |
| 9918 | | |
| 9919 | | > ui tool show "Selection Inspector" |
| 9920 | | |
| 9921 | | > setattr sel r ss_type 1 |
| 9922 | | |
| 9923 | | Assigning ss_type attribute to 186 items |
| 9924 | | |
| 9925 | | > select clear |
| 9926 | | |
| 9927 | | > hide #!18 models |
| 9928 | | |
| 9929 | | > show #!18 models |
| 9930 | | |
| 9931 | | > select #19:74-110 |
| 9932 | | |
| 9933 | | 1686 atoms, 1740 bonds, 192 residues, 1 model selected |
| 9934 | | |
| 9935 | | > select #19:74-103 |
| 9936 | | |
| 9937 | | 1578 atoms, 1632 bonds, 180 residues, 1 model selected |
| 9938 | | |
| 9939 | | > ui tool show "Selection Inspector" |
| 9940 | | |
| 9941 | | > setattr sel r ss_type 1 |
| 9942 | | |
| 9943 | | Assigning ss_type attribute to 180 items |
| 9944 | | |
| 9945 | | > select clear |
| 9946 | | |
| 9947 | | > select add #18 |
| 9948 | | |
| 9949 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 9950 | | |
| 9951 | | > select subtract #18 |
| 9952 | | |
| 9953 | | 6 models selected |
| 9954 | | |
| 9955 | | > hide #!19 models |
| 9956 | | |
| 9957 | | > select add #18 |
| 9958 | | |
| 9959 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 9960 | | |
| 9961 | | > mlp sel |
| 9962 | | |
| 9963 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 9964 | | mean 0.2399, maximum 23.77 |
| 9965 | | Map values for surface "230904_Chol_HC_150.pdb_B SES surface": minimum -28.02, |
| 9966 | | mean 0.1571, maximum 25.31 |
| 9967 | | Map values for surface "230904_Chol_HC_150.pdb_C SES surface": minimum -27.97, |
| 9968 | | mean 0.1452, maximum 24.75 |
| 9969 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.84, |
| 9970 | | mean 0.223, maximum 24.9 |
| 9971 | | Map values for surface "230904_Chol_HC_150.pdb_E SES surface": minimum -27.89, |
| 9972 | | mean 0.1406, maximum 24.79 |
| 9973 | | Map values for surface "230904_Chol_HC_150.pdb_F SES surface": minimum -27.69, |
| 9974 | | mean 0.1485, maximum 25.26 |
| 9975 | | To also show corresponding color key, enter the above mlp command and add key |
| 9976 | | true |
| 9977 | | |
| 9978 | | > hide sel surfaces |
| 9979 | | |
| 9980 | | > show sel surfaces |
| 9981 | | |
| 9982 | | > hide sel surfaces |
| 9983 | | |
| 9984 | | > show sel surfaces |
| 9985 | | |
| 9986 | | > show #!19 models |
| 9987 | | |
| 9988 | | > hide #!18 models |
| 9989 | | |
| 9990 | | > select add #19 |
| 9991 | | |
| 9992 | | 20034 atoms, 20568 bonds, 12 pseudobonds, 2256 residues, 10 models selected |
| 9993 | | |
| 9994 | | > hide sel & #!19 surfaces |
| 9995 | | |
| 9996 | | > show sel & #!19 surfaces |
| 9997 | | |
| 9998 | | > mlp sel & #!19 |
| 9999 | | |
| 10000 | | Map values for surface "230926_CBX_HC_181.pdb_A SES surface": minimum -27.57, |
| 10001 | | mean 0.8045, maximum 24.47 |
| 10002 | | Map values for surface "230926_CBX_HC_181.pdb_B SES surface": minimum -26.7, |
| 10003 | | mean 0.8385, maximum 24.42 |
| 10004 | | Map values for surface "230926_CBX_HC_181.pdb_C SES surface": minimum -28.15, |
| 10005 | | mean 0.8719, maximum 24.27 |
| 10006 | | Map values for surface "230926_CBX_HC_181.pdb_D SES surface": minimum -27.92, |
| 10007 | | mean 0.8499, maximum 24.31 |
| 10008 | | Map values for surface "230926_CBX_HC_181.pdb_E SES surface": minimum -27.7, |
| 10009 | | mean 0.8051, maximum 24.33 |
| 10010 | | Map values for surface "230926_CBX_HC_181.pdb_F SES surface": minimum -28.95, |
| 10011 | | mean 0.8538, maximum 24.25 |
| 10012 | | To also show corresponding color key, enter the above mlp command and add key |
| 10013 | | true |
| 10014 | | |
| 10015 | | > show #!18 models |
| 10016 | | |
| 10017 | | > hide #!18 models |
| 10018 | | |
| 10019 | | > show #!18 models |
| 10020 | | |
| 10021 | | > hide #!18 models |
| 10022 | | |
| 10023 | | > hide #!19 models |
| 10024 | | |
| 10025 | | > show #!18 models |
| 10026 | | |
| 10027 | | > select #18:1-21 |
| 10028 | | |
| 10029 | | 876 atoms, 888 bonds, 120 residues, 1 model selected |
| 10030 | | |
| 10031 | | > hide sel surfaces |
| 10032 | | |
| 10033 | | > hide sel ribbons |
| 10034 | | |
| 10035 | | > show #!19 models |
| 10036 | | |
| 10037 | | > hide #!18 models |
| 10038 | | |
| 10039 | | > show #!18 models |
| 10040 | | |
| 10041 | | > hide #!18 models |
| 10042 | | |
| 10043 | | > hide #!19 surfaces |
| 10044 | | |
| 10045 | | > show #!18 models |
| 10046 | | |
| 10047 | | > hide sel surfaces |
| 10048 | | |
| 10049 | | > select add #18 |
| 10050 | | |
| 10051 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 8 models selected |
| 10052 | | |
| 10053 | | > select subtract #18 |
| 10054 | | |
| 10055 | | 6 models selected |
| 10056 | | |
| 10057 | | > hide #!18-19 surfaces |
| 10058 | | |
| 10059 | | > hide #!19 models |
| 10060 | | |
| 10061 | | > select add #18 |
| 10062 | | |
| 10063 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 10064 | | |
| 10065 | | > hide sel surfaces |
| 10066 | | |
| 10067 | | > show sel surfaces |
| 10068 | | |
| 10069 | | > hide #!18 models |
| 10070 | | |
| 10071 | | > show #!19 models |
| 10072 | | |
| 10073 | | > select subtract #18 |
| 10074 | | |
| 10075 | | 6 models selected |
| 10076 | | |
| 10077 | | > select add #19 |
| 10078 | | |
| 10079 | | 8634 atoms, 8916 bonds, 6 pseudobonds, 1020 residues, 2 models selected |
| 10080 | | |
| 10081 | | > show sel surfaces |
| 10082 | | |
| 10083 | | > show #!18 models |
| 10084 | | |
| 10085 | | > hide #!18 models |
| 10086 | | |
| 10087 | | > show #!18 models |
| 10088 | | |
| 10089 | | > select #18:1-20 |
| 10090 | | |
| 10091 | | 852 atoms, 864 bonds, 114 residues, 1 model selected |
| 10092 | | |
| 10093 | | > hide sel ribbons |
| 10094 | | |
| 10095 | | > hide sel surfaces |
| 10096 | | |
| 10097 | | > hide #!19 models |
| 10098 | | |
| 10099 | | > show #!19 models |
| 10100 | | |
| 10101 | | > hide #!19 models |
| 10102 | | |
| 10103 | | > hide sel surfaces |
| 10104 | | |
| 10105 | | [Repeated 1 time(s)] |
| 10106 | | |
| 10107 | | > select add #18 |
| 10108 | | |
| 10109 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 8 models selected |
| 10110 | | |
| 10111 | | > select subtract #18 |
| 10112 | | |
| 10113 | | 6 models selected |
| 10114 | | |
| 10115 | | > hide #!18 surfaces |
| 10116 | | |
| 10117 | | > select #17 |
| 10118 | | |
| 10119 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 10120 | | |
| 10121 | | > select #18 |
| 10122 | | |
| 10123 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 10124 | | |
| 10125 | | > show sel atoms |
| 10126 | | |
| 10127 | | > undo |
| 10128 | | |
| 10129 | | > show sel ribbons |
| 10130 | | |
| 10131 | | > select clear |
| 10132 | | |
| 10133 | | > show #!19 models |
| 10134 | | |
| 10135 | | > hide #!19 models |
| 10136 | | |
| 10137 | | > mlp #!18 |
| 10138 | | |
| 10139 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 10140 | | mean 0.2399, maximum 23.77 |
| 10141 | | Map values for surface "230904_Chol_HC_150.pdb_B SES surface": minimum -28.02, |
| 10142 | | mean 0.1571, maximum 25.31 |
| 10143 | | Map values for surface "230904_Chol_HC_150.pdb_C SES surface": minimum -27.97, |
| 10144 | | mean 0.1452, maximum 24.75 |
| 10145 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.84, |
| 10146 | | mean 0.223, maximum 24.9 |
| 10147 | | Map values for surface "230904_Chol_HC_150.pdb_E SES surface": minimum -27.89, |
| 10148 | | mean 0.1406, maximum 24.79 |
| 10149 | | Map values for surface "230904_Chol_HC_150.pdb_F SES surface": minimum -27.69, |
| 10150 | | mean 0.1485, maximum 25.26 |
| 10151 | | To also show corresponding color key, enter the above mlp command and add key |
| 10152 | | true |
| 10153 | | |
| 10154 | | > hide #!18 models |
| 10155 | | |
| 10156 | | > show #!19 models |
| 10157 | | |
| 10158 | | > mlp #!19 |
| 10159 | | |
| 10160 | | Map values for surface "230926_CBX_HC_181.pdb_A SES surface": minimum -27.57, |
| 10161 | | mean 0.8045, maximum 24.47 |
| 10162 | | Map values for surface "230926_CBX_HC_181.pdb_B SES surface": minimum -26.7, |
| 10163 | | mean 0.8385, maximum 24.42 |
| 10164 | | Map values for surface "230926_CBX_HC_181.pdb_C SES surface": minimum -28.15, |
| 10165 | | mean 0.8719, maximum 24.27 |
| 10166 | | Map values for surface "230926_CBX_HC_181.pdb_D SES surface": minimum -27.92, |
| 10167 | | mean 0.8499, maximum 24.31 |
| 10168 | | Map values for surface "230926_CBX_HC_181.pdb_E SES surface": minimum -27.7, |
| 10169 | | mean 0.8051, maximum 24.33 |
| 10170 | | Map values for surface "230926_CBX_HC_181.pdb_F SES surface": minimum -28.95, |
| 10171 | | mean 0.8538, maximum 24.25 |
| 10172 | | To also show corresponding color key, enter the above mlp command and add key |
| 10173 | | true |
| 10174 | | |
| 10175 | | > hide #!19 models |
| 10176 | | |
| 10177 | | > show #!18 models |
| 10178 | | |
| 10179 | | > hide #!18 models |
| 10180 | | |
| 10181 | | > show #!19 models |
| 10182 | | |
| 10183 | | > show #!18 models |
| 10184 | | |
| 10185 | | > hide #!19 models |
| 10186 | | |
| 10187 | | > show #!19 models |
| 10188 | | |
| 10189 | | > hide #!18 models |
| 10190 | | |
| 10191 | | > show #!18 models |
| 10192 | | |
| 10193 | | > hide #!19 models |
| 10194 | | |
| 10195 | | > show #!19 models |
| 10196 | | |
| 10197 | | > hide #!18 models |
| 10198 | | |
| 10199 | | > show #!18 models |
| 10200 | | |
| 10201 | | > hide #!19 models |
| 10202 | | |
| 10203 | | > hide #!18 models |
| 10204 | | |
| 10205 | | > show #!18 models |
| 10206 | | |
| 10207 | | > hide #!18 surfaces |
| 10208 | | |
| 10209 | | > mlp #!18 |
| 10210 | | |
| 10211 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 10212 | | mean 0.2399, maximum 23.77 |
| 10213 | | Map values for surface "230904_Chol_HC_150.pdb_B SES surface": minimum -28.02, |
| 10214 | | mean 0.1571, maximum 25.31 |
| 10215 | | Map values for surface "230904_Chol_HC_150.pdb_C SES surface": minimum -27.97, |
| 10216 | | mean 0.1452, maximum 24.75 |
| 10217 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.84, |
| 10218 | | mean 0.223, maximum 24.9 |
| 10219 | | Map values for surface "230904_Chol_HC_150.pdb_E SES surface": minimum -27.89, |
| 10220 | | mean 0.1406, maximum 24.79 |
| 10221 | | Map values for surface "230904_Chol_HC_150.pdb_F SES surface": minimum -27.69, |
| 10222 | | mean 0.1485, maximum 25.26 |
| 10223 | | To also show corresponding color key, enter the above mlp command and add key |
| 10224 | | true |
| 10225 | | |
| 10226 | | > hide #!18 models |
| 10227 | | |
| 10228 | | > show #!19 models |
| 10229 | | |
| 10230 | | > show #!18 models |
| 10231 | | |
| 10232 | | > hide #!19 models |
| 10233 | | |
| 10234 | | > show #!19 models |
| 10235 | | |
| 10236 | | > hide #!19 models |
| 10237 | | |
| 10238 | | > hide #!18 models |
| 10239 | | |
| 10240 | | > show #!18 models |
| 10241 | | |
| 10242 | | > show #!19 models |
| 10243 | | |
| 10244 | | > hide #!18 models |
| 10245 | | |
| 10246 | | > show #!18 models |
| 10247 | | |
| 10248 | | > hide #!18 models |
| 10249 | | |
| 10250 | | > show #!18 models |
| 10251 | | |
| 10252 | | > hide #!18 models |
| 10253 | | |
| 10254 | | > show #!18 models |
| 10255 | | |
| 10256 | | > hide #!18 models |
| 10257 | | |
| 10258 | | > show #!18 models |
| 10259 | | |
| 10260 | | > hide #!19 models |
| 10261 | | |
| 10262 | | > show #!19 models |
| 10263 | | |
| 10264 | | > hide #!19 models |
| 10265 | | |
| 10266 | | > show #!19 models |
| 10267 | | |
| 10268 | | > hide #!19 models |
| 10269 | | |
| 10270 | | > show #!19 models |
| 10271 | | |
| 10272 | | > hide #!19 models |
| 10273 | | |
| 10274 | | > show #!19 models |
| 10275 | | |
| 10276 | | > hide #!19 models |
| 10277 | | |
| 10278 | | > show #!19 models |
| 10279 | | |
| 10280 | | > hide #!19 models |
| 10281 | | |
| 10282 | | > show #!19 models |
| 10283 | | |
| 10284 | | > hide #!19 models |
| 10285 | | |
| 10286 | | > show #!19 models |
| 10287 | | |
| 10288 | | > hide #!19 models |
| 10289 | | |
| 10290 | | > show #!19 models |
| 10291 | | |
| 10292 | | > hide #!19 models |
| 10293 | | |
| 10294 | | > show #!19 models |
| 10295 | | |
| 10296 | | > hide #!19 models |
| 10297 | | |
| 10298 | | > show #!19 models |
| 10299 | | |
| 10300 | | > hide #!19 models |
| 10301 | | |
| 10302 | | > show #!19 models |
| 10303 | | |
| 10304 | | > hide #!19 models |
| 10305 | | |
| 10306 | | > show #!19 models |
| 10307 | | |
| 10308 | | > hide #!19 models |
| 10309 | | |
| 10310 | | > show #!19 models |
| 10311 | | |
| 10312 | | > hide #!19 models |
| 10313 | | |
| 10314 | | > show #!19 models |
| 10315 | | |
| 10316 | | > hide #!19 models |
| 10317 | | |
| 10318 | | > show #!19 models |
| 10319 | | |
| 10320 | | > hide #!19 models |
| 10321 | | |
| 10322 | | > show #!19 models |
| 10323 | | |
| 10324 | | > hide #!19 models |
| 10325 | | |
| 10326 | | > show #!19 models |
| 10327 | | |
| 10328 | | > hide #!19 models |
| 10329 | | |
| 10330 | | > show #!19 models |
| 10331 | | |
| 10332 | | > hide #!19 models |
| 10333 | | |
| 10334 | | > show #!19 models |
| 10335 | | |
| 10336 | | > hide #!19 models |
| 10337 | | |
| 10338 | | > show #!19 models |
| 10339 | | |
| 10340 | | > hide #!19 models |
| 10341 | | |
| 10342 | | > show #!19 models |
| 10343 | | |
| 10344 | | > hide #!19 models |
| 10345 | | |
| 10346 | | > show #!19 models |
| 10347 | | |
| 10348 | | > hide #!19 models |
| 10349 | | |
| 10350 | | > show #!19 models |
| 10351 | | |
| 10352 | | > hide #!19 models |
| 10353 | | |
| 10354 | | > show #!19 models |
| 10355 | | |
| 10356 | | > hide #!19 models |
| 10357 | | |
| 10358 | | > show #!19 models |
| 10359 | | |
| 10360 | | > hide #!19 models |
| 10361 | | |
| 10362 | | > show #!19 models |
| 10363 | | |
| 10364 | | > hide #!19 models |
| 10365 | | |
| 10366 | | > show #!19 models |
| 10367 | | |
| 10368 | | > hide #!19 models |
| 10369 | | |
| 10370 | | > show #!19 models |
| 10371 | | |
| 10372 | | > hide #!19 models |
| 10373 | | |
| 10374 | | > hide #!18 surfaces |
| 10375 | | |
| 10376 | | > show #!19 models |
| 10377 | | |
| 10378 | | > hide #!18-19 surfaces |
| 10379 | | |
| 10380 | | > morph #18,19 |
| 10381 | | |
| 10382 | | Computed 51 frame morph #22 |
| 10383 | | |
| 10384 | | > coordset #22 1,51 |
| 10385 | | |
| 10386 | | > hide #!22 models |
| 10387 | | |
| 10388 | | > show #!19 models |
| 10389 | | |
| 10390 | | > show #!18 models |
| 10391 | | |
| 10392 | | > show #!22 models |
| 10393 | | |
| 10394 | | > hide #!19 models |
| 10395 | | |
| 10396 | | > hide #!18 models |
| 10397 | | |
| 10398 | | > hide #!22 models |
| 10399 | | |
| 10400 | | > show #!18 models |
| 10401 | | |
| 10402 | | > color bfactor #!18 |
| 10403 | | |
| 10404 | | 11400 atoms, 1236 residues, 6 surfaces, atom bfactor range 0 to 142 |
| 10405 | | |
| 10406 | | > mlp #!18 |
| 10407 | | |
| 10408 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 10409 | | mean 0.2399, maximum 23.77 |
| 10410 | | Map values for surface "230904_Chol_HC_150.pdb_B SES surface": minimum -28.02, |
| 10411 | | mean 0.1571, maximum 25.31 |
| 10412 | | Map values for surface "230904_Chol_HC_150.pdb_C SES surface": minimum -27.97, |
| 10413 | | mean 0.1452, maximum 24.75 |
| 10414 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.84, |
| 10415 | | mean 0.223, maximum 24.9 |
| 10416 | | Map values for surface "230904_Chol_HC_150.pdb_E SES surface": minimum -27.89, |
| 10417 | | mean 0.1406, maximum 24.79 |
| 10418 | | Map values for surface "230904_Chol_HC_150.pdb_F SES surface": minimum -27.69, |
| 10419 | | mean 0.1485, maximum 25.26 |
| 10420 | | To also show corresponding color key, enter the above mlp command and add key |
| 10421 | | true |
| 10422 | | |
| 10423 | | > hide #!18 models |
| 10424 | | |
| 10425 | | > show #!18 models |
| 10426 | | |
| 10427 | | > hide #!18 surfaces |
| 10428 | | |
| 10429 | | > select #18 |
| 10430 | | |
| 10431 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 10432 | | |
| 10433 | | > color #18 #00aaffff |
| 10434 | | |
| 10435 | | > select ::name="CLR" |
| 10436 | | |
| 10437 | | 504 atoms, 558 bonds, 18 residues, 2 models selected |
| 10438 | | |
| 10439 | | > color sel yellow |
| 10440 | | |
| 10441 | | > select #18 |
| 10442 | | |
| 10443 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 10444 | | |
| 10445 | | > color sel byhetero |
| 10446 | | |
| 10447 | | > save "C:/Users/OJS/OneDrive - |
| 10448 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 10449 | | |
| 10450 | | > hide #!18 models |
| 10451 | | |
| 10452 | | > show #!22 models |
| 10453 | | |
| 10454 | | > show #!18 models |
| 10455 | | |
| 10456 | | > hide #!22 models |
| 10457 | | |
| 10458 | | > show #!19 models |
| 10459 | | |
| 10460 | | > select clear |
| 10461 | | |
| 10462 | | > hide #!19 models |
| 10463 | | |
| 10464 | | > hide #!18 models |
| 10465 | | |
| 10466 | | > show #!20 models |
| 10467 | | |
| 10468 | | > select ::name="6OU" |
| 10469 | | |
| 10470 | | 3528 atoms, 3456 bonds, 72 residues, 3 models selected |
| 10471 | | |
| 10472 | | > show sel atoms |
| 10473 | | |
| 10474 | | > color sel byhetero |
| 10475 | | |
| 10476 | | > select clear |
| 10477 | | |
| 10478 | | > select ::name="6OU" |
| 10479 | | |
| 10480 | | 3528 atoms, 3456 bonds, 72 residues, 3 models selected |
| 10481 | | |
| 10482 | | > color sel gray |
| 10483 | | |
| 10484 | | > color sel byhetero |
| 10485 | | |
| 10486 | | > select clear |
| 10487 | | |
| 10488 | | > show #!22 models |
| 10489 | | |
| 10490 | | > hide #!22 models |
| 10491 | | |
| 10492 | | > select clear |
| 10493 | | |
| 10494 | | > show #!19 models |
| 10495 | | |
| 10496 | | > hide #!20 models |
| 10497 | | |
| 10498 | | > select ::name="CBO" |
| 10499 | | |
| 10500 | | 246 atoms, 270 bonds, 6 residues, 1 model selected |
| 10501 | | |
| 10502 | | > show sel atoms |
| 10503 | | |
| 10504 | | > select clear |
| 10505 | | |
| 10506 | | > show #!18 models |
| 10507 | | |
| 10508 | | > show #!22 models |
| 10509 | | |
| 10510 | | > hide #!19 models |
| 10511 | | |
| 10512 | | > hide #!18 models |
| 10513 | | |
| 10514 | | > hide #!22 models |
| 10515 | | |
| 10516 | | > morph #17,20 |
| 10517 | | |
| 10518 | | Computed 51 frame morph #23 |
| 10519 | | |
| 10520 | | > coordset #23 1,51 |
| 10521 | | |
| 10522 | | > select #23 |
| 10523 | | |
| 10524 | | 9606 atoms, 9882 bonds, 6 pseudobonds, 1182 residues, 2 models selected |
| 10525 | | |
| 10526 | | > show sel atoms |
| 10527 | | |
| 10528 | | > style sel stick |
| 10529 | | |
| 10530 | | Changed 9606 atom styles |
| 10531 | | |
| 10532 | | > color sel byhetero |
| 10533 | | |
| 10534 | | > select clear |
| 10535 | | |
| 10536 | | > select #23/b,c,e,f |
| 10537 | | |
| 10538 | | 6404 atoms, 6588 bonds, 4 pseudobonds, 788 residues, 2 models selected |
| 10539 | | |
| 10540 | | > hide sel ribbons |
| 10541 | | |
| 10542 | | > hide sel atoms |
| 10543 | | |
| 10544 | | > select up |
| 10545 | | |
| 10546 | | 9606 atoms, 9882 bonds, 6 pseudobonds, 1182 residues, 2 models selected |
| 10547 | | |
| 10548 | | > select down |
| 10549 | | |
| 10550 | | 6404 atoms, 6588 bonds, 4 pseudobonds, 788 residues, 2 models selected |
| 10551 | | |
| 10552 | | > select up |
| 10553 | | |
| 10554 | | 9606 atoms, 9882 bonds, 6 pseudobonds, 1182 residues, 2 models selected |
| 10555 | | |
| 10556 | | > select up |
| 10557 | | |
| 10558 | | 88570 atoms, 90922 bonds, 6 pseudobonds, 10296 residues, 42 models selected |
| 10559 | | |
| 10560 | | > select clear |
| 10561 | | |
| 10562 | | > show #!21 models |
| 10563 | | |
| 10564 | | > hide #!21 models |
| 10565 | | |
| 10566 | | > show #!21 models |
| 10567 | | |
| 10568 | | > hide #!21 models |
| 10569 | | |
| 10570 | | > show #!20 models |
| 10571 | | |
| 10572 | | > hide #!23 models |
| 10573 | | |
| 10574 | | > show #!18 models |
| 10575 | | |
| 10576 | | > nirog #18,20 |
| 10577 | | |
| 10578 | | Unknown command: nirog #18,20 |
| 10579 | | |
| 10580 | | > morph #18,20 |
| 10581 | | |
| 10582 | | Computed 51 frame morph #24 |
| 10583 | | |
| 10584 | | > coordset #24 1,51 |
| 10585 | | |
| 10586 | | > close #23 |
| 10587 | | |
| 10588 | | > close #22 |
| 10589 | | |
| 10590 | | > hide #!24 models |
| 10591 | | |
| 10592 | | > open "C:/Users/OJS/OneDrive - |
| 10593 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Models/231009_CBX_HC_185.pdb" |
| 10594 | | |
| 10595 | | Chain information for 231009_CBX_HC_185.pdb #22 |
| 10596 | | --- |
| 10597 | | Chain | Description |
| 10598 | | A B C D E F | No description available |
| 10599 | | |
| 10600 | | |
| 10601 | | > color #22 #aa55ffff |
| 10602 | | |
| 10603 | | > select add #22 |
| 10604 | | |
| 10605 | | 8550 atoms, 8838 bonds, 6 pseudobonds, 1014 residues, 2 models selected |
| 10606 | | |
| 10607 | | > hide sel atoms |
| 10608 | | |
| 10609 | | > show sel cartoons |
| 10610 | | |
| 10611 | | > show #!19 models |
| 10612 | | |
| 10613 | | > ribbon style thickness 0.6 |
| 10614 | | |
| 10615 | | > ui tool show "Selection Inspector" |
| 10616 | | |
| 10617 | | > setattr =sel p display false |
| 10618 | | |
| 10619 | | Assigning display attribute to 6 items |
| 10620 | | |
| 10621 | | > size =sel stickRadius 0.3 |
| 10622 | | |
| 10623 | | Changed 8838 bond radii |
| 10624 | | |
| 10625 | | > ui mousemode right "translate selected models" |
| 10626 | | |
| 10627 | | > view matrix models #22,1,0,0,-61.977,0,1,0,-58.498,0,0,1,-12.461 |
| 10628 | | |
| 10629 | | > view matrix models #22,1,0,0,-39.409,0,1,0,-50.734,0,0,1,-44.154 |
| 10630 | | |
| 10631 | | > view matrix models #22,1,0,0,-54.676,0,1,0,-57.409,0,0,1,-63.388 |
| 10632 | | |
| 10633 | | > fitmap #22 inMap #4 |
| 10634 | | |
| 10635 | | Fit molecule 231009_CBX_HC_185.pdb (#22) to map |
| 10636 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) using 8550 atoms |
| 10637 | | average map value = 0.07426, steps = 60 |
| 10638 | | shifted from previous position = 0.805 |
| 10639 | | rotated from previous position = 2.27 degrees |
| 10640 | | atoms outside contour = 7588, contour level = 0.28686 |
| 10641 | | |
| 10642 | | Position of 231009_CBX_HC_185.pdb (#22) relative to |
| 10643 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 10644 | | Matrix rotation and translation |
| 10645 | | 0.99143154 -0.13062735 -0.00002495 25.76792514 |
| 10646 | | 0.13061225 0.99131981 -0.01501571 -16.68051252 |
| 10647 | | 0.00198619 0.01488379 0.99988726 -1.81490954 |
| 10648 | | Axis 0.11370673 -0.00764831 0.99348492 |
| 10649 | | Axis point 140.06320313 186.98348468 0.00000000 |
| 10650 | | Rotation angle (degrees) 7.55491475 |
| 10651 | | Shift along axis 1.25447903 |
| 10652 | | |
| 10653 | | |
| 10654 | | > view matrix models |
| 10655 | | > #22,0.99932,0.036698,-0.0025584,-60.11,-0.036731,0.99922,-0.014759,-50.082,0.0020148,0.014843,0.99989,-69.396 |
| 10656 | | |
| 10657 | | > view matrix models |
| 10658 | | > #22,0.99932,0.036698,-0.0025584,-64.711,-0.036731,0.99922,-0.014759,-51.573,0.0020148,0.014843,0.99989,-69.749 |
| 10659 | | |
| 10660 | | > ui mousemode right "rotate selected models" |
| 10661 | | |
| 10662 | | > view matrix models |
| 10663 | | > #22,-0.66458,-0.73684,0.12412,319.43,0.68264,-0.53117,0.50185,-0.40154,-0.30386,0.41825,0.856,-62.696 |
| 10664 | | |
| 10665 | | > view matrix models |
| 10666 | | > #22,-0.68358,-0.72103,0.11329,321.71,0.72987,-0.67604,0.10127,80.504,0.0035655,0.15191,0.98839,-90.901 |
| 10667 | | |
| 10668 | | > view matrix models |
| 10669 | | > #22,-0.091595,-0.99507,-0.037941,293.35,0.99499,-0.092987,0.036715,-49.858,-0.040062,-0.034388,0.99861,-54.385 |
| 10670 | | |
| 10671 | | > view matrix models |
| 10672 | | > #22,-0.12199,-0.98526,-0.11995,310.01,0.99248,-0.11985,-0.024859,-35.037,0.010116,-0.12208,0.99247,-47.168 |
| 10673 | | |
| 10674 | | > view matrix models |
| 10675 | | > #22,-0.12106,-0.98901,-0.084909,304.82,0.97743,-0.10384,-0.184,-9.4926,0.17316,-0.10527,0.97925,-74.889 |
| 10676 | | |
| 10677 | | > view matrix models |
| 10678 | | > #22,-0.63138,0.70869,0.31483,43.177,-0.51434,-0.68654,0.51393,222.13,0.58036,0.16255,0.79797,-157.66 |
| 10679 | | |
| 10680 | | > view matrix models |
| 10681 | | > #22,-0.61598,0.73656,0.27937,41.724,-0.73832,-0.66346,0.12129,318.9,0.27469,-0.13155,0.95249,-83.057 |
| 10682 | | |
| 10683 | | > view matrix models |
| 10684 | | > #22,-0.23087,0.92155,0.31215,-58.206,-0.90911,-0.31864,0.26832,266.27,0.34674,-0.22183,0.91135,-73.387 |
| 10685 | | |
| 10686 | | > view matrix models |
| 10687 | | > #22,-0.1927,0.98125,-0.0050125,-23.225,-0.97988,-0.19215,0.053985,291.64,0.052009,0.015314,0.99853,-77.907 |
| 10688 | | |
| 10689 | | > fitmap #22 inMap #4 |
| 10690 | | |
| 10691 | | Fit molecule 231009_CBX_HC_185.pdb (#22) to map |
| 10692 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) using 8550 atoms |
| 10693 | | average map value = 0.3149, steps = 92 |
| 10694 | | shifted from previous position = 5.53 |
| 10695 | | rotated from previous position = 8.26 degrees |
| 10696 | | atoms outside contour = 5217, contour level = 0.28686 |
| 10697 | | |
| 10698 | | Position of 231009_CBX_HC_185.pdb (#22) relative to |
| 10699 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 10700 | | Matrix rotation and translation |
| 10701 | | 0.10742601 0.99421305 0.00021706 -16.90770752 |
| 10702 | | -0.99421307 0.10742599 0.00011727 313.16910087 |
| 10703 | | 0.00009328 -0.00022840 0.99999996 1.38485607 |
| 10704 | | Axis -0.00017384 0.00006225 -0.99999998 |
| 10705 | | Axis point 165.96120129 166.00123546 0.00000000 |
| 10706 | | Rotation angle (degrees) 83.83304408 |
| 10707 | | Shift along axis -1.36242139 |
| 10708 | | |
| 10709 | | |
| 10710 | | > select clear |
| 10711 | | |
| 10712 | | > hide #!22 models |
| 10713 | | |
| 10714 | | > show #!22 models |
| 10715 | | |
| 10716 | | > hide #!22 models |
| 10717 | | |
| 10718 | | > show #!22 models |
| 10719 | | |
| 10720 | | > hide #!22 models |
| 10721 | | |
| 10722 | | > show #!22 models |
| 10723 | | |
| 10724 | | > fitmap #22 inMap #4 |
| 10725 | | |
| 10726 | | Fit molecule 231009_CBX_HC_185.pdb (#22) to map |
| 10727 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) using 8550 atoms |
| 10728 | | average map value = 0.315, steps = 28 |
| 10729 | | shifted from previous position = 0.0228 |
| 10730 | | rotated from previous position = 0.0138 degrees |
| 10731 | | atoms outside contour = 5212, contour level = 0.28686 |
| 10732 | | |
| 10733 | | Position of 231009_CBX_HC_185.pdb (#22) relative to |
| 10734 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 10735 | | Matrix rotation and translation |
| 10736 | | 0.10758166 0.99419624 0.00011349 -16.92937765 |
| 10737 | | -0.99419621 0.10758163 0.00026806 313.13387605 |
| 10738 | | 0.00025429 -0.00014167 0.99999995 1.34446101 |
| 10739 | | Axis -0.00020606 -0.00007081 -0.99999998 |
| 10740 | | Axis point 165.95809172 165.99711052 0.00000000 |
| 10741 | | Rotation angle (degrees) 83.82407491 |
| 10742 | | Shift along axis -1.36314582 |
| 10743 | | |
| 10744 | | |
| 10745 | | > fitmap #22 inMap #4 |
| 10746 | | |
| 10747 | | Fit molecule 231009_CBX_HC_185.pdb (#22) to map |
| 10748 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) using 8550 atoms |
| 10749 | | average map value = 0.315, steps = 36 |
| 10750 | | shifted from previous position = 0.00466 |
| 10751 | | rotated from previous position = 0.00577 degrees |
| 10752 | | atoms outside contour = 5211, contour level = 0.28686 |
| 10753 | | |
| 10754 | | Position of 231009_CBX_HC_185.pdb (#22) relative to |
| 10755 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 10756 | | Matrix rotation and translation |
| 10757 | | 0.10763247 0.99419075 0.00005485 -16.92478353 |
| 10758 | | -0.99419070 0.10763244 0.00033211 313.11074633 |
| 10759 | | 0.00032427 -0.00009028 0.99999993 1.32426515 |
| 10760 | | Axis -0.00021243 -0.00013550 -0.99999997 |
| 10761 | | Axis point 165.95642037 165.98343403 0.00000000 |
| 10762 | | Rotation angle (degrees) 83.82114690 |
| 10763 | | Shift along axis -1.36309530 |
| 10764 | | |
| 10765 | | |
| 10766 | | > fitmap #22 inMap #4 |
| 10767 | | |
| 10768 | | Fit molecule 231009_CBX_HC_185.pdb (#22) to map |
| 10769 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) using 8550 atoms |
| 10770 | | average map value = 0.315, steps = 28 |
| 10771 | | shifted from previous position = 0.0137 |
| 10772 | | rotated from previous position = 0.0105 degrees |
| 10773 | | atoms outside contour = 5220, contour level = 0.28686 |
| 10774 | | |
| 10775 | | Position of 231009_CBX_HC_185.pdb (#22) relative to |
| 10776 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 10777 | | Matrix rotation and translation |
| 10778 | | 0.10767053 0.99418661 0.00017475 -16.93930578 |
| 10779 | | -0.99418661 0.10767049 0.00019963 313.11528995 |
| 10780 | | 0.00017966 -0.00019523 0.99999996 1.36568073 |
| 10781 | | Axis -0.00019858 -0.00000247 -0.99999998 |
| 10782 | | Axis point 165.95851113 165.99423628 0.00000000 |
| 10783 | | Rotation angle (degrees) 83.81895333 |
| 10784 | | Shift along axis -1.36308978 |
| 10785 | | |
| 10786 | | |
| 10787 | | > fitmap #22 inMap #4 |
| 10788 | | |
| 10789 | | Fit molecule 231009_CBX_HC_185.pdb (#22) to map |
| 10790 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) using 8550 atoms |
| 10791 | | average map value = 0.315, steps = 28 |
| 10792 | | shifted from previous position = 0.0193 |
| 10793 | | rotated from previous position = 0.0119 degrees |
| 10794 | | atoms outside contour = 5208, contour level = 0.28686 |
| 10795 | | |
| 10796 | | Position of 231009_CBX_HC_185.pdb (#22) relative to |
| 10797 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 10798 | | Matrix rotation and translation |
| 10799 | | 0.10765536 0.99418827 0.00002763 -16.92860828 |
| 10800 | | -0.99418821 0.10765535 0.00034662 313.10736323 |
| 10801 | | 0.00034163 -0.00006478 0.99999993 1.31758225 |
| 10802 | | Axis -0.00020691 -0.00015792 -0.99999997 |
| 10803 | | Axis point 165.95665162 165.98407308 0.00000000 |
| 10804 | | Rotation angle (degrees) 83.81982732 |
| 10805 | | Shift along axis -1.36352567 |
| 10806 | | |
| 10807 | | |
| 10808 | | > fitmap #22 inMap #4 |
| 10809 | | |
| 10810 | | Fit molecule 231009_CBX_HC_185.pdb (#22) to map |
| 10811 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) using 8550 atoms |
| 10812 | | average map value = 0.315, steps = 40 |
| 10813 | | shifted from previous position = 0.0178 |
| 10814 | | rotated from previous position = 0.0106 degrees |
| 10815 | | atoms outside contour = 5219, contour level = 0.28686 |
| 10816 | | |
| 10817 | | Position of 231009_CBX_HC_185.pdb (#22) relative to |
| 10818 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 10819 | | Matrix rotation and translation |
| 10820 | | 0.10761681 0.99419243 0.00015601 -16.92946496 |
| 10821 | | -0.99419242 0.10761677 0.00022040 313.12299434 |
| 10822 | | 0.00020233 -0.00017883 0.99999995 1.35915099 |
| 10823 | | Axis -0.00020078 -0.00002329 -0.99999998 |
| 10824 | | Axis point 165.95822724 165.99208140 0.00000000 |
| 10825 | | Rotation angle (degrees) 83.82204911 |
| 10826 | | Shift along axis -1.36304552 |
| 10827 | | |
| 10828 | | |
| 10829 | | > fitmap #22 inMap #4 |
| 10830 | | |
| 10831 | | Fit molecule 231009_CBX_HC_185.pdb (#22) to map |
| 10832 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) using 8550 atoms |
| 10833 | | average map value = 0.315, steps = 28 |
| 10834 | | shifted from previous position = 0.0151 |
| 10835 | | rotated from previous position = 0.0112 degrees |
| 10836 | | atoms outside contour = 5208, contour level = 0.28686 |
| 10837 | | |
| 10838 | | Position of 231009_CBX_HC_185.pdb (#22) relative to |
| 10839 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 10840 | | Matrix rotation and translation |
| 10841 | | 0.10767950 0.99418566 0.00001893 -16.92906219 |
| 10842 | | -0.99418560 0.10767949 0.00034485 313.10108602 |
| 10843 | | 0.00034080 -0.00005596 0.99999993 1.31590365 |
| 10844 | | Axis -0.00020157 -0.00016187 -0.99999997 |
| 10845 | | Axis point 165.95718860 165.98141112 0.00000000 |
| 10846 | | Rotation angle (degrees) 83.81843603 |
| 10847 | | Shift along axis -1.36317433 |
| 10848 | | |
| 10849 | | |
| 10850 | | > select clear |
| 10851 | | |
| 10852 | | > hide #!19 models |
| 10853 | | |
| 10854 | | > show #!19 models |
| 10855 | | |
| 10856 | | > hide #!19 models |
| 10857 | | |
| 10858 | | > show #!19 models |
| 10859 | | |
| 10860 | | > hide #!19 models |
| 10861 | | |
| 10862 | | > show #!19 models |
| 10863 | | |
| 10864 | | > hide #!19 models |
| 10865 | | |
| 10866 | | > show #!19 models |
| 10867 | | |
| 10868 | | > hide #!22 models |
| 10869 | | |
| 10870 | | > show #!22 models |
| 10871 | | |
| 10872 | | > hide #!19 models |
| 10873 | | |
| 10874 | | > select #22:74-103 |
| 10875 | | |
| 10876 | | 1578 atoms, 1632 bonds, 180 residues, 1 model selected |
| 10877 | | |
| 10878 | | > ui tool show "Selection Inspector" |
| 10879 | | |
| 10880 | | > setattr sel r ss_type 1 |
| 10881 | | |
| 10882 | | Assigning ss_type attribute to 180 items |
| 10883 | | |
| 10884 | | > select clear |
| 10885 | | |
| 10886 | | > select #22:203-235 |
| 10887 | | |
| 10888 | | 1536 atoms, 1572 bonds, 186 residues, 1 model selected |
| 10889 | | |
| 10890 | | > select #22:203-230 |
| 10891 | | |
| 10892 | | 1362 atoms, 1386 bonds, 168 residues, 1 model selected |
| 10893 | | |
| 10894 | | > ui tool show "Selection Inspector" |
| 10895 | | |
| 10896 | | > setattr sel r ss_type 1 |
| 10897 | | |
| 10898 | | Assigning ss_type attribute to 168 items |
| 10899 | | |
| 10900 | | > select clear |
| 10901 | | |
| 10902 | | > color #19 #ffff7fff |
| 10903 | | |
| 10904 | | > show #!19 models |
| 10905 | | |
| 10906 | | > hide #!19 models |
| 10907 | | |
| 10908 | | > morph #18,22 |
| 10909 | | |
| 10910 | | Computed 51 frame morph #23 |
| 10911 | | |
| 10912 | | > coordset #23 1,51 |
| 10913 | | |
| 10914 | | > close #19 |
| 10915 | | |
| 10916 | | > rename #22 id #19 |
| 10917 | | |
| 10918 | | > select clear |
| 10919 | | |
| 10920 | | > close #24 |
| 10921 | | |
| 10922 | | > save "C:/Users/OJS/OneDrive - |
| 10923 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 10924 | | |
| 10925 | | > hide #!23 models |
| 10926 | | |
| 10927 | | > show #!19 models |
| 10928 | | |
| 10929 | | > show #!18 models |
| 10930 | | |
| 10931 | | > hide #!19 models |
| 10932 | | |
| 10933 | | > show #!19 models |
| 10934 | | |
| 10935 | | > hide #!18 models |
| 10936 | | |
| 10937 | | > hide #!19 models |
| 10938 | | |
| 10939 | | > show #!18 models |
| 10940 | | |
| 10941 | | > hide #!18 models |
| 10942 | | |
| 10943 | | > show #!18 models |
| 10944 | | |
| 10945 | | > hide #!18 models |
| 10946 | | |
| 10947 | | > show #!19 models |
| 10948 | | |
| 10949 | | > mlp #!19 |
| 10950 | | |
| 10951 | | Map values for surface "231009_CBX_HC_185.pdb_A SES surface": minimum -27.25, |
| 10952 | | mean 0.8939, maximum 24.32 |
| 10953 | | Map values for surface "231009_CBX_HC_185.pdb_B SES surface": minimum -27.68, |
| 10954 | | mean 0.9203, maximum 24.56 |
| 10955 | | Map values for surface "231009_CBX_HC_185.pdb_C SES surface": minimum -27.75, |
| 10956 | | mean 0.9056, maximum 24.54 |
| 10957 | | Map values for surface "231009_CBX_HC_185.pdb_D SES surface": minimum -27.64, |
| 10958 | | mean 0.9218, maximum 24.13 |
| 10959 | | Map values for surface "231009_CBX_HC_185.pdb_E SES surface": minimum -27.6, |
| 10960 | | mean 0.8945, maximum 23.94 |
| 10961 | | Map values for surface "231009_CBX_HC_185.pdb_F SES surface": minimum -26.79, |
| 10962 | | mean 0.9031, maximum 24.3 |
| 10963 | | To also show corresponding color key, enter the above mlp command and add key |
| 10964 | | true |
| 10965 | | |
| 10966 | | > select #19/b,c,e,f |
| 10967 | | |
| 10968 | | 5700 atoms, 5892 bonds, 4 pseudobonds, 676 residues, 2 models selected |
| 10969 | | |
| 10970 | | > hide sel surfaces |
| 10971 | | |
| 10972 | | > select clear |
| 10973 | | |
| 10974 | | > select #19/b,c,e,f |
| 10975 | | |
| 10976 | | 5700 atoms, 5892 bonds, 4 pseudobonds, 676 residues, 2 models selected |
| 10977 | | |
| 10978 | | > show sel surfaces |
| 10979 | | |
| 10980 | | > select #19/b,c,d,e, |
| 10981 | | |
| 10982 | | Expected an objects specifier or a keyword |
| 10983 | | |
| 10984 | | > select #19/b,c,d,e |
| 10985 | | |
| 10986 | | 5700 atoms, 5892 bonds, 4 pseudobonds, 676 residues, 2 models selected |
| 10987 | | |
| 10988 | | > hide sel surfaces |
| 10989 | | |
| 10990 | | > select clear |
| 10991 | | |
| 10992 | | > show #!5 models |
| 10993 | | |
| 10994 | | > hide #!5 models |
| 10995 | | |
| 10996 | | > show #!6 models |
| 10997 | | |
| 10998 | | > show #!5 models |
| 10999 | | |
| 11000 | | > hide #!6 models |
| 11001 | | |
| 11002 | | > hide #!5 models |
| 11003 | | |
| 11004 | | > show #!6 models |
| 11005 | | |
| 11006 | | > hide #!6 models |
| 11007 | | |
| 11008 | | > show #!6 models |
| 11009 | | |
| 11010 | | > hide #!19 surfaces |
| 11011 | | |
| 11012 | | > hide #!19 models |
| 11013 | | |
| 11014 | | > show #!19 models |
| 11015 | | |
| 11016 | | > hide #!6 models |
| 11017 | | |
| 11018 | | > show #!6 models |
| 11019 | | |
| 11020 | | > hide #!6 models |
| 11021 | | |
| 11022 | | > show #!6 models |
| 11023 | | |
| 11024 | | > hide #!6 models |
| 11025 | | |
| 11026 | | > show #!18 models |
| 11027 | | |
| 11028 | | > hide #!18 models |
| 11029 | | |
| 11030 | | > show #!18 models |
| 11031 | | |
| 11032 | | > select ::name="CBO" |
| 11033 | | |
| 11034 | | 246 atoms, 270 bonds, 6 residues, 1 model selected |
| 11035 | | |
| 11036 | | > show sel atoms |
| 11037 | | |
| 11038 | | > color sel dark green |
| 11039 | | |
| 11040 | | > color sel byhetero |
| 11041 | | |
| 11042 | | > select clear |
| 11043 | | |
| 11044 | | > show #!5 models |
| 11045 | | |
| 11046 | | > hide #!5 models |
| 11047 | | |
| 11048 | | > show #!6 models |
| 11049 | | |
| 11050 | | > volume #6 level 0.1169 |
| 11051 | | |
| 11052 | | > show #!5 models |
| 11053 | | |
| 11054 | | > hide #!6 models |
| 11055 | | |
| 11056 | | > volume #5 level 0.07217 |
| 11057 | | |
| 11058 | | > volume #5 level 0.06717 |
| 11059 | | |
| 11060 | | > open "C:/Users/OJS/OneDrive - |
| 11061 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/C1/cryosparc_P52_J654_003_volume_map.mrc" |
| 11062 | | |
| 11063 | | Opened cryosparc_P52_J654_003_volume_map.mrc as #22, grid size 400,400,400, |
| 11064 | | pixel 0.83, shown at level 0.0434, step 2, values float32 |
| 11065 | | |
| 11066 | | > volume #22 step 1 |
| 11067 | | |
| 11068 | | > volume #22 level 0.08678 |
| 11069 | | |
| 11070 | | > volume #22 level 0.07438 |
| 11071 | | |
| 11072 | | > fitmap #22 inMap #4 |
| 11073 | | |
| 11074 | | Fit map cryosparc_P52_J654_003_volume_map.mrc in map |
| 11075 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc using 165931 points |
| 11076 | | correlation = 0.3467, correlation about mean = 0.06451, overlap = 1020 |
| 11077 | | steps = 572, shift = 66.6, angle = 13.5 degrees |
| 11078 | | |
| 11079 | | Position of cryosparc_P52_J654_003_volume_map.mrc (#22) relative to |
| 11080 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 11081 | | Matrix rotation and translation |
| 11082 | | 0.96842316 -0.20253930 -0.14537678 79.98562775 |
| 11083 | | 0.17515572 0.96768712 -0.18138941 36.16399589 |
| 11084 | | 0.17741772 0.15019813 0.97260654 -34.22847996 |
| 11085 | | Axis 0.55511851 -0.54039787 0.63230814 |
| 11086 | | Axis point -141.10209622 408.09928033 0.00000000 |
| 11087 | | Rotation angle (degrees) 17.37736162 |
| 11088 | | Shift along axis 3.21560923 |
| 11089 | | |
| 11090 | | |
| 11091 | | > select add #22 |
| 11092 | | |
| 11093 | | 2 models selected |
| 11094 | | |
| 11095 | | > view matrix models |
| 11096 | | > #22,0.98592,0.0050434,-0.16715,-6.5265,-0.042711,0.97399,-0.22255,17.631,0.16167,0.22655,0.96049,-106.2 |
| 11097 | | |
| 11098 | | > ui mousemode right "translate selected models" |
| 11099 | | |
| 11100 | | > view matrix models |
| 11101 | | > #22,0.98592,0.0050434,-0.16715,-31.173,-0.042711,0.97399,-0.22255,-17.116,0.16167,0.22655,0.96049,-111.92 |
| 11102 | | |
| 11103 | | > fitmap #22 inMap #4 |
| 11104 | | |
| 11105 | | Fit map cryosparc_P52_J654_003_volume_map.mrc in map |
| 11106 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc using 165931 points |
| 11107 | | correlation = 0.3213, correlation about mean = 0.05285, overlap = 1453 |
| 11108 | | steps = 128, shift = 9.51, angle = 9.02 degrees |
| 11109 | | |
| 11110 | | Position of cryosparc_P52_J654_003_volume_map.mrc (#22) relative to |
| 11111 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 11112 | | Matrix rotation and translation |
| 11113 | | 0.97945409 -0.20054069 0.02128659 32.70629724 |
| 11114 | | 0.20011701 0.95343264 -0.22565323 3.84721168 |
| 11115 | | 0.02495733 0.22527679 0.97397510 -36.84600292 |
| 11116 | | Axis 0.74753457 -0.00608522 0.66419503 |
| 11117 | | Axis point 0.00000000 161.53781159 -16.28811236 |
| 11118 | | Rotation angle (degrees) 17.55441842 |
| 11119 | | Shift along axis -0.04725542 |
| 11120 | | |
| 11121 | | |
| 11122 | | > fitmap #22 inMap #4 |
| 11123 | | |
| 11124 | | Fit map cryosparc_P52_J654_003_volume_map.mrc in map |
| 11125 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc using 165931 points |
| 11126 | | correlation = 0.3214, correlation about mean = 0.05297, overlap = 1453 |
| 11127 | | steps = 28, shift = 0.00919, angle = 0.00766 degrees |
| 11128 | | |
| 11129 | | Position of cryosparc_P52_J654_003_volume_map.mrc (#22) relative to |
| 11130 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 11131 | | Matrix rotation and translation |
| 11132 | | 0.97945312 -0.20053508 0.02138361 32.68653409 |
| 11133 | | 0.20013112 0.95340858 -0.22574237 3.85542181 |
| 11134 | | 0.02488195 0.22538359 0.97395232 -36.85123096 |
| 11135 | | Axis 0.74767209 -0.00579796 0.66404279 |
| 11136 | | Axis point 0.00000000 161.46661792 -16.24795805 |
| 11137 | | Rotation angle (degrees) 17.55895877 |
| 11138 | | Shift along axis -0.05433839 |
| 11139 | | |
| 11140 | | |
| 11141 | | > view matrix models |
| 11142 | | > #22,0.99912,-0.038564,-0.016629,-48.006,0.033812,0.97352,-0.2261,-18.585,0.024908,0.22534,0.97396,-95.994 |
| 11143 | | |
| 11144 | | > fitmap #22 inMap #4 |
| 11145 | | |
| 11146 | | Fit map cryosparc_P52_J654_003_volume_map.mrc in map |
| 11147 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc using 165931 points |
| 11148 | | correlation = 0.3069, correlation about mean = 0.02999, overlap = 1323 |
| 11149 | | steps = 68, shift = 2.74, angle = 4.15 degrees |
| 11150 | | |
| 11151 | | Position of cryosparc_P52_J654_003_volume_map.mrc (#22) relative to |
| 11152 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 11153 | | Matrix rotation and translation |
| 11154 | | 0.96580729 -0.25894060 0.01288570 48.17115881 |
| 11155 | | 0.25310559 0.93094561 -0.26320682 15.23376552 |
| 11156 | | 0.05615905 0.25746851 0.96465337 -42.89725488 |
| 11157 | | Axis 0.71174179 -0.05915289 0.69994611 |
| 11158 | | Axis point 0.00000000 177.40180007 12.08958003 |
| 11159 | | Rotation angle (degrees) 21.45531225 |
| 11160 | | Shift along axis 3.35853846 |
| 11161 | | |
| 11162 | | |
| 11163 | | > view matrix models |
| 11164 | | > #22,0.99451,-0.099901,-0.031261,-32.996,0.088323,0.96112,-0.26162,-23.268,0.056182,0.25743,0.96466,-106.78 |
| 11165 | | |
| 11166 | | > ui mousemode right "rotate selected models" |
| 11167 | | |
| 11168 | | > view matrix models |
| 11169 | | > #22,0.94056,-0.33741,0.038869,3.6007,0.33686,0.9121,-0.23366,-61.125,0.043385,0.23286,0.97154,-101.73 |
| 11170 | | |
| 11171 | | > fitmap #22 inMap #4 |
| 11172 | | |
| 11173 | | Fit map cryosparc_P52_J654_003_volume_map.mrc in map |
| 11174 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc using 165931 points |
| 11175 | | correlation = 0.6097, correlation about mean = 0.3097, overlap = 3564 |
| 11176 | | steps = 144, shift = 2.74, angle = 15.3 degrees |
| 11177 | | |
| 11178 | | Position of cryosparc_P52_J654_003_volume_map.mrc (#22) relative to |
| 11179 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 11180 | | Matrix rotation and translation |
| 11181 | | 0.80390349 -0.59475705 0.00179629 130.97442642 |
| 11182 | | 0.59475832 0.80390453 -0.00022466 -66.15064711 |
| 11183 | | -0.00131042 0.00124897 0.99999836 1.08546927 |
| 11184 | | Axis 0.00123884 0.00261174 0.99999582 |
| 11185 | | Axis point 165.80842923 165.54430252 0.00000000 |
| 11186 | | Rotation angle (degrees) 36.49553695 |
| 11187 | | Shift along axis 1.07495343 |
| 11188 | | |
| 11189 | | |
| 11190 | | > select clear |
| 11191 | | |
| 11192 | | > hide #!19 models |
| 11193 | | |
| 11194 | | > hide #!5 models |
| 11195 | | |
| 11196 | | > volume #22 level 0.08213 |
| 11197 | | |
| 11198 | | > close #23 |
| 11199 | | |
| 11200 | | > open "C:/Users/OJS/OneDrive - |
| 11201 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/C1/cryosparc_P52_J576_005_volume_map_sharp.mrc" |
| 11202 | | |
| 11203 | | Opened cryosparc_P52_J576_005_volume_map_sharp.mrc as #23, grid size |
| 11204 | | 400,400,400, pixel 0.83, shown at level 0.0627, step 2, values float32 |
| 11205 | | |
| 11206 | | > volume #23 step 1 |
| 11207 | | |
| 11208 | | > volume #23 level 0.1292 |
| 11209 | | |
| 11210 | | > ui mousemode right "translate selected models" |
| 11211 | | |
| 11212 | | > select add #23 |
| 11213 | | |
| 11214 | | 2 models selected |
| 11215 | | |
| 11216 | | > view matrix models #23,1,0,0,-118.06,0,1,0,10.474,0,0,1,-51.83 |
| 11217 | | |
| 11218 | | > ui mousemode right "rotate selected models" |
| 11219 | | |
| 11220 | | > view matrix models |
| 11221 | | > #23,0.15214,-0.9763,0.15391,158.38,-0.97312,-0.17521,-0.14945,390.98,0.17287,-0.12704,-0.97672,269.02 |
| 11222 | | |
| 11223 | | > view matrix models |
| 11224 | | > #23,0.15108,-0.97253,0.1771,154.08,-0.9771,-0.17408,-0.12239,386.96,0.14986,-0.15455,-0.97655,277.36 |
| 11225 | | |
| 11226 | | > ui mousemode right "translate selected models" |
| 11227 | | |
| 11228 | | > view matrix models |
| 11229 | | > #23,0.15108,-0.97253,0.1771,213.39,-0.9771,-0.17408,-0.12239,314.96,0.14986,-0.15455,-0.97655,273.58 |
| 11230 | | |
| 11231 | | > fitmap #23 inMap #4 |
| 11232 | | |
| 11233 | | Fit map cryosparc_P52_J576_005_volume_map_sharp.mrc in map |
| 11234 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc using 135057 points |
| 11235 | | correlation = 0.305, correlation about mean = 0.04649, overlap = 2002 |
| 11236 | | steps = 108, shift = 3.09, angle = 6.14 degrees |
| 11237 | | |
| 11238 | | Position of cryosparc_P52_J576_005_volume_map_sharp.mrc (#23) relative to |
| 11239 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 11240 | | Matrix rotation and translation |
| 11241 | | 0.40209643 -0.88761580 0.22462557 209.98474510 |
| 11242 | | -0.90584892 -0.42136236 -0.04349136 385.87731932 |
| 11243 | | 0.13325238 -0.18598911 -0.97347412 345.78265697 |
| 11244 | | Axis -0.83696156 0.53668108 -0.10709234 |
| 11245 | | Axis point 0.00000000 269.05537442 149.54960651 |
| 11246 | | Rotation angle (degrees) 175.11661382 |
| 11247 | | Shift along axis -5.68677532 |
| 11248 | | |
| 11249 | | |
| 11250 | | > view matrix models |
| 11251 | | > #23,0.24523,-0.9455,0.21424,187.97,-0.96026,-0.26728,-0.080421,327.55,0.1333,-0.186,-0.97346,280.59 |
| 11252 | | |
| 11253 | | > fitmap #23 inMap #4 |
| 11254 | | |
| 11255 | | Fit map cryosparc_P52_J576_005_volume_map_sharp.mrc in map |
| 11256 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc using 135057 points |
| 11257 | | correlation = 0.8603, correlation about mean = 0.647, overlap = 9416 |
| 11258 | | steps = 160, shift = 8.45, angle = 14.6 degrees |
| 11259 | | |
| 11260 | | Position of cryosparc_P52_J576_005_volume_map_sharp.mrc (#23) relative to |
| 11261 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 11262 | | Matrix rotation and translation |
| 11263 | | 0.31563628 -0.94888011 0.00052745 271.02238398 |
| 11264 | | -0.94887884 -0.31563672 -0.00154948 376.18647696 |
| 11265 | | 0.00163676 -0.00001141 -0.99999866 331.69993023 |
| 11266 | | Axis 0.81105923 -0.58496366 0.00066653 |
| 11267 | | Axis point 0.00000000 285.73160074 165.84854606 |
| 11268 | | Rotation angle (degrees) 179.94567290 |
| 11269 | | Shift along axis -0.01912620 |
| 11270 | | |
| 11271 | | |
| 11272 | | > fitmap #23 inMap #4 |
| 11273 | | |
| 11274 | | Fit map cryosparc_P52_J576_005_volume_map_sharp.mrc in map |
| 11275 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc using 135057 points |
| 11276 | | correlation = 0.8602, correlation about mean = 0.6468, overlap = 9418 |
| 11277 | | steps = 28, shift = 0.0154, angle = 0.0139 degrees |
| 11278 | | |
| 11279 | | Position of cryosparc_P52_J576_005_volume_map_sharp.mrc (#23) relative to |
| 11280 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 11281 | | Matrix rotation and translation |
| 11282 | | 0.31567177 -0.94886832 0.00049440 271.02375417 |
| 11283 | | -0.94886741 -0.31567215 -0.00131212 376.13442832 |
| 11284 | | 0.00140110 -0.00005492 -0.99999902 331.74657898 |
| 11285 | | Axis 0.81107004 -0.58494875 0.00058357 |
| 11286 | | Axis point 0.00000000 285.71997067 165.86564190 |
| 11287 | | Rotation angle (degrees) 179.95559425 |
| 11288 | | Shift along axis -0.00651986 |
| 11289 | | |
| 11290 | | |
| 11291 | | > fitmap #22 inMap #5 |
| 11292 | | |
| 11293 | | Fit map cryosparc_P52_J654_003_volume_map.mrc in map |
| 11294 | | N55H_CBX_P52_J650_003_volume_map.mrc using 130729 points |
| 11295 | | correlation = 0.9632, correlation about mean = 0.7971, overlap = 2392 |
| 11296 | | steps = 44, shift = 0.254, angle = 0.091 degrees |
| 11297 | | |
| 11298 | | Position of cryosparc_P52_J654_003_volume_map.mrc (#22) relative to |
| 11299 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 11300 | | Matrix rotation and translation |
| 11301 | | 0.99999955 0.00001703 0.00094844 -0.16665372 |
| 11302 | | -0.00001626 0.99999966 -0.00081873 0.12291641 |
| 11303 | | -0.00094845 0.00081871 0.99999922 0.02575101 |
| 11304 | | Axis 0.65338259 0.75691131 -0.01328377 |
| 11305 | | Axis point 26.78752666 0.00000000 164.57025866 |
| 11306 | | Rotation angle (degrees) 0.07179440 |
| 11307 | | Shift along axis -0.01619388 |
| 11308 | | |
| 11309 | | |
| 11310 | | > fitmap #22 inMap #5 |
| 11311 | | |
| 11312 | | Fit map cryosparc_P52_J654_003_volume_map.mrc in map |
| 11313 | | N55H_CBX_P52_J650_003_volume_map.mrc using 130729 points |
| 11314 | | correlation = 0.9633, correlation about mean = 0.7973, overlap = 2392 |
| 11315 | | steps = 44, shift = 0.0151, angle = 0.00594 degrees |
| 11316 | | |
| 11317 | | Position of cryosparc_P52_J654_003_volume_map.mrc (#22) relative to |
| 11318 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 11319 | | Matrix rotation and translation |
| 11320 | | 0.99999949 -0.00003922 0.00100982 -0.16368183 |
| 11321 | | 0.00004011 0.99999961 -0.00088034 0.13810945 |
| 11322 | | -0.00100979 0.00088038 0.99999910 0.02611190 |
| 11323 | | Axis 0.65685378 0.75343694 0.02959526 |
| 11324 | | Axis point 25.79503361 0.00000000 160.35609606 |
| 11325 | | Rotation angle (degrees) 0.07679147 |
| 11326 | | Shift along axis -0.00268547 |
| 11327 | | |
| 11328 | | |
| 11329 | | > fitmap #22 inMap #5 |
| 11330 | | |
| 11331 | | Fit map cryosparc_P52_J654_003_volume_map.mrc in map |
| 11332 | | N55H_CBX_P52_J650_003_volume_map.mrc using 130729 points |
| 11333 | | correlation = 0.9633, correlation about mean = 0.7973, overlap = 2392 |
| 11334 | | steps = 44, shift = 0.00341, angle = 0.0132 degrees |
| 11335 | | |
| 11336 | | Position of cryosparc_P52_J654_003_volume_map.mrc (#22) relative to |
| 11337 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 11338 | | Matrix rotation and translation |
| 11339 | | 0.99999950 0.00018527 0.00097840 -0.19810161 |
| 11340 | | -0.00018445 0.99999963 -0.00083669 0.16586021 |
| 11341 | | -0.00097855 0.00083651 0.99999917 0.02726457 |
| 11342 | | Axis 0.64325441 0.75234295 -0.14214026 |
| 11343 | | Axis point 26.74699936 0.00000000 198.20125343 |
| 11344 | | Rotation angle (degrees) 0.07451734 |
| 11345 | | Shift along axis -0.00652137 |
| 11346 | | |
| 11347 | | |
| 11348 | | > fitmap #22 inMap #5 |
| 11349 | | |
| 11350 | | Fit map cryosparc_P52_J654_003_volume_map.mrc in map |
| 11351 | | N55H_CBX_P52_J650_003_volume_map.mrc using 130729 points |
| 11352 | | correlation = 0.9633, correlation about mean = 0.7971, overlap = 2392 |
| 11353 | | steps = 40, shift = 0.0132, angle = 0.00959 degrees |
| 11354 | | |
| 11355 | | Position of cryosparc_P52_J654_003_volume_map.mrc (#22) relative to |
| 11356 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 11357 | | Matrix rotation and translation |
| 11358 | | 0.99999956 0.00002401 0.00094127 -0.16855976 |
| 11359 | | -0.00002324 0.99999967 -0.00081166 0.12248084 |
| 11360 | | -0.00094129 0.00081163 0.99999923 0.02597335 |
| 11361 | | Axis 0.65291425 0.75719336 -0.01900510 |
| 11362 | | Axis point 27.09713293 0.00000000 166.73849084 |
| 11363 | | Rotation angle (degrees) 0.07122507 |
| 11364 | | Shift along axis -0.01780702 |
| 11365 | | |
| 11366 | | |
| 11367 | | > fitmap #22 inMap #5 |
| 11368 | | |
| 11369 | | Fit map cryosparc_P52_J654_003_volume_map.mrc in map |
| 11370 | | N55H_CBX_P52_J650_003_volume_map.mrc using 130729 points |
| 11371 | | correlation = 0.9633, correlation about mean = 0.7972, overlap = 2392 |
| 11372 | | steps = 40, shift = 0.0103, angle = 0.00611 degrees |
| 11373 | | |
| 11374 | | Position of cryosparc_P52_J654_003_volume_map.mrc (#22) relative to |
| 11375 | | N55H_CBX_P52_J650_003_volume_map.mrc (#5) coordinates: |
| 11376 | | Matrix rotation and translation |
| 11377 | | 0.99999954 0.00013015 0.00094930 -0.18396882 |
| 11378 | | -0.00012938 0.99999966 -0.00081834 0.15073787 |
| 11379 | | -0.00094941 0.00081822 0.99999921 0.02542331 |
| 11380 | | Axis 0.64940673 0.75343561 -0.10298388 |
| 11381 | | Axis point 25.69858790 0.00000000 187.97907948 |
| 11382 | | Rotation angle (degrees) 0.07219485 |
| 11383 | | Shift along axis -0.00851751 |
| 11384 | | |
| 11385 | | |
| 11386 | | > select clear |
| 11387 | | |
| 11388 | | > hide #!22 models |
| 11389 | | |
| 11390 | | > volume #23 level 0.1577 |
| 11391 | | |
| 11392 | | > hide #!23 models |
| 11393 | | |
| 11394 | | > show #!22 models |
| 11395 | | |
| 11396 | | > hide #!22 models |
| 11397 | | |
| 11398 | | > show #!23 models |
| 11399 | | |
| 11400 | | > volume #23 level 0.1406 |
| 11401 | | |
| 11402 | | > hide #!23 models |
| 11403 | | |
| 11404 | | > show #!22 models |
| 11405 | | |
| 11406 | | > hide #!18 models |
| 11407 | | |
| 11408 | | > volume #22 level 0.07671 |
| 11409 | | |
| 11410 | | > show #!18 models |
| 11411 | | |
| 11412 | | > volume #22 level 0.07129 |
| 11413 | | |
| 11414 | | > hide #!18 models |
| 11415 | | |
| 11416 | | > show #!19 models |
| 11417 | | |
| 11418 | | > hide #!19 models |
| 11419 | | |
| 11420 | | > show #!18 models |
| 11421 | | |
| 11422 | | > hide #!22 models |
| 11423 | | |
| 11424 | | > hide #!18 models |
| 11425 | | |
| 11426 | | > show #!18 models |
| 11427 | | |
| 11428 | | > show #!22 models |
| 11429 | | |
| 11430 | | > hide #!22 models |
| 11431 | | |
| 11432 | | > open |
| 11433 | | > C:/Users/OJS/Desktop/Phenix/220302_Cx43_N55H_CBX/RealSpaceRefine_186/231006_From150_real_space_refined_186.pdb |
| 11434 | | |
| 11435 | | Chain information for 231006_From150_real_space_refined_186.pdb #24 |
| 11436 | | --- |
| 11437 | | Chain | Description |
| 11438 | | A B C D E F | No description available |
| 11439 | | |
| 11440 | | |
| 11441 | | > select add #24 |
| 11442 | | |
| 11443 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 11444 | | |
| 11445 | | > hide sel atoms |
| 11446 | | |
| 11447 | | > show sel cartoons |
| 11448 | | |
| 11449 | | [Repeated 1 time(s)] |
| 11450 | | |
| 11451 | | > color #24 cyan |
| 11452 | | |
| 11453 | | > ui mousemode right "rotate selected models" |
| 11454 | | |
| 11455 | | > ui mousemode right "translate selected models" |
| 11456 | | |
| 11457 | | > view matrix models #24,1,0,0,17.94,0,1,0,-55.06,0,0,1,-46.911 |
| 11458 | | |
| 11459 | | > view matrix models #24,1,0,0,-29.604,0,1,0,-53.506,0,0,1,-14.078 |
| 11460 | | |
| 11461 | | > view matrix models #24,1,0,0,-51.608,0,1,0,-56.51,0,0,1,-69.13 |
| 11462 | | |
| 11463 | | > view matrix models #24,1,0,0,-55.583,0,1,0,-56.931,0,0,1,-65.026 |
| 11464 | | |
| 11465 | | > view matrix models #24,1,0,0,-57.655,0,1,0,-56.087,0,0,1,-63.3 |
| 11466 | | |
| 11467 | | > ui mousemode right "rotate selected models" |
| 11468 | | |
| 11469 | | > view matrix models |
| 11470 | | > #24,0.99475,0.097018,-0.032611,-67.517,-0.093494,0.99096,0.096206,-54.914,0.04165,-0.092651,0.99483,-53.981 |
| 11471 | | |
| 11472 | | > view matrix models |
| 11473 | | > #24,0.98922,0.14641,-0.003361,-79.616,-0.14642,0.98922,-0.0028217,-29.532,0.0029117,0.0032834,0.99999,-64.327 |
| 11474 | | |
| 11475 | | > fitmap #24 inMap #4 |
| 11476 | | |
| 11477 | | Fit molecule 231006_From150_real_space_refined_186.pdb (#24) to map |
| 11478 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) using 11400 atoms |
| 11479 | | average map value = 0.3613, steps = 68 |
| 11480 | | shifted from previous position = 1.53 |
| 11481 | | rotated from previous position = 1.22 degrees |
| 11482 | | atoms outside contour = 6635, contour level = 0.28686 |
| 11483 | | |
| 11484 | | Position of 231006_From150_real_space_refined_186.pdb (#24) relative to |
| 11485 | | N55H_CBX_P52_J575_011_volume_map_sharp.mrc (#4) coordinates: |
| 11486 | | Matrix rotation and translation |
| 11487 | | 0.99999999 -0.00000349 0.00012771 -0.01838810 |
| 11488 | | 0.00000351 0.99999999 -0.00012401 0.01842138 |
| 11489 | | -0.00012771 0.00012401 0.99999998 -0.01640801 |
| 11490 | | Axis 0.69651395 0.71727430 0.01964457 |
| 11491 | | Axis point -128.51406025 0.00000000 144.43406313 |
| 11492 | | Rotation angle (degrees) 0.01020110 |
| 11493 | | Shift along axis 0.00008328 |
| 11494 | | |
| 11495 | | |
| 11496 | | > select clear |
| 11497 | | |
| 11498 | | > morph #18,24 |
| 11499 | | |
| 11500 | | Computed 51 frame morph #25 |
| 11501 | | |
| 11502 | | > coordset #25 1,51 |
| 11503 | | |
| 11504 | | > hide #!25 models |
| 11505 | | |
| 11506 | | > show #!25 models |
| 11507 | | |
| 11508 | | > close #25 |
| 11509 | | |
| 11510 | | > morph #24,19 |
| 11511 | | |
| 11512 | | Computed 51 frame morph #25 |
| 11513 | | |
| 11514 | | > coordset #25 1,51 |
| 11515 | | |
| 11516 | | > show #!24 models |
| 11517 | | |
| 11518 | | > hide #!24 models |
| 11519 | | |
| 11520 | | > show #!24 models |
| 11521 | | |
| 11522 | | > hide #!25 models |
| 11523 | | |
| 11524 | | > show #!18 models |
| 11525 | | |
| 11526 | | > morph #18,19 |
| 11527 | | |
| 11528 | | Computed 51 frame morph #26 |
| 11529 | | |
| 11530 | | > coordset #26 1,51 |
| 11531 | | |
| 11532 | | > hide #!24 models |
| 11533 | | |
| 11534 | | > select #25,26 |
| 11535 | | |
| 11536 | | 16608 atoms, 17136 bonds, 12 pseudobonds, 2016 residues, 4 models selected |
| 11537 | | |
| 11538 | | > show sel atoms |
| 11539 | | |
| 11540 | | > style sel stick |
| 11541 | | |
| 11542 | | Changed 16608 atom styles |
| 11543 | | |
| 11544 | | > select clear |
| 11545 | | |
| 11546 | | > select #25,26/b,c,e,f |
| 11547 | | |
| 11548 | | 11072 atoms, 11424 bonds, 8 pseudobonds, 1344 residues, 4 models selected |
| 11549 | | |
| 11550 | | > hide sel ribbons |
| 11551 | | |
| 11552 | | > hide sel atoms |
| 11553 | | |
| 11554 | | > select #26/A:86 |
| 11555 | | |
| 11556 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 11557 | | |
| 11558 | | > select #26/A:89@CA |
| 11559 | | |
| 11560 | | 1 atom, 1 residue, 1 model selected |
| 11561 | | |
| 11562 | | > select #26/A:84 |
| 11563 | | |
| 11564 | | 11 atoms, 11 bonds, 1 residue, 1 model selected |
| 11565 | | |
| 11566 | | > select #26/A:87 |
| 11567 | | |
| 11568 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 11569 | | |
| 11570 | | > select #26/A:37 |
| 11571 | | |
| 11572 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 11573 | | |
| 11574 | | > select #26/A:83 |
| 11575 | | |
| 11576 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 11577 | | |
| 11578 | | > select #26/A:86 |
| 11579 | | |
| 11580 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 11581 | | |
| 11582 | | > select #26/A:82@CA |
| 11583 | | |
| 11584 | | 1 atom, 1 residue, 1 model selected |
| 11585 | | |
| 11586 | | > select #26/A:86 |
| 11587 | | |
| 11588 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 11589 | | |
| 11590 | | > select #26/A:82@CA |
| 11591 | | |
| 11592 | | 1 atom, 1 residue, 1 model selected |
| 11593 | | |
| 11594 | | > select #26:82-85 |
| 11595 | | |
| 11596 | | 204 atoms, 204 bonds, 24 residues, 1 model selected |
| 11597 | | |
| 11598 | | > color sel black |
| 11599 | | |
| 11600 | | > color sel byhetero |
| 11601 | | |
| 11602 | | > color sel gray |
| 11603 | | |
| 11604 | | > color sel magenta |
| 11605 | | |
| 11606 | | > select #26/A:86 |
| 11607 | | |
| 11608 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 11609 | | |
| 11610 | | > undo |
| 11611 | | |
| 11612 | | [Repeated 5 time(s)] |
| 11613 | | |
| 11614 | | > select clear |
| 11615 | | |
| 11616 | | > hide #!26 models |
| 11617 | | |
| 11618 | | > show #!25 models |
| 11619 | | |
| 11620 | | > select #25 |
| 11621 | | |
| 11622 | | 8304 atoms, 8568 bonds, 6 pseudobonds, 1008 residues, 2 models selected |
| 11623 | | |
| 11624 | | > color sel byhetero |
| 11625 | | |
| 11626 | | > select clear |
| 11627 | | |
| 11628 | | > show #!26 models |
| 11629 | | |
| 11630 | | > hide #!25 models |
| 11631 | | |
| 11632 | | > hide #!26 models |
| 11633 | | |
| 11634 | | > show #!24 models |
| 11635 | | |
| 11636 | | > show #!21 models |
| 11637 | | |
| 11638 | | > hide #!21 models |
| 11639 | | |
| 11640 | | > show #!18 models |
| 11641 | | |
| 11642 | | > hide #!18 models |
| 11643 | | |
| 11644 | | > select #24/b,c,e,f |
| 11645 | | |
| 11646 | | 7600 atoms, 7768 bonds, 4 pseudobonds, 824 residues, 2 models selected |
| 11647 | | |
| 11648 | | > hide sel ribbons |
| 11649 | | |
| 11650 | | > show #!18 models |
| 11651 | | |
| 11652 | | > select #18/b,c,e,f |
| 11653 | | |
| 11654 | | 7600 atoms, 7768 bonds, 4 pseudobonds, 824 residues, 2 models selected |
| 11655 | | |
| 11656 | | > hide sel ribbons |
| 11657 | | |
| 11658 | | > select clear |
| 11659 | | |
| 11660 | | > hide #!24 models |
| 11661 | | |
| 11662 | | > hide #!18 models |
| 11663 | | |
| 11664 | | > show #!24 models |
| 11665 | | |
| 11666 | | > show #!18 models |
| 11667 | | |
| 11668 | | > hide #!18 models |
| 11669 | | |
| 11670 | | > show #!18 models |
| 11671 | | |
| 11672 | | > hide #!18 models |
| 11673 | | |
| 11674 | | > show #!18 models |
| 11675 | | |
| 11676 | | > hide #!18 models |
| 11677 | | |
| 11678 | | > hide #!24 models |
| 11679 | | |
| 11680 | | > show #!18 models |
| 11681 | | |
| 11682 | | > hide #!18 models |
| 11683 | | |
| 11684 | | > show #!24 models |
| 11685 | | |
| 11686 | | > show #!18 models |
| 11687 | | |
| 11688 | | > hide #!24 models |
| 11689 | | |
| 11690 | | > hide #!18 models |
| 11691 | | |
| 11692 | | > show #!24 models |
| 11693 | | |
| 11694 | | > ribbon style thickness 0.6 |
| 11695 | | |
| 11696 | | > show #!18 models |
| 11697 | | |
| 11698 | | > hide #!24 models |
| 11699 | | |
| 11700 | | > show #!24 models |
| 11701 | | |
| 11702 | | > hide #!18 models |
| 11703 | | |
| 11704 | | > hide #!24 models |
| 11705 | | |
| 11706 | | > show #!18 models |
| 11707 | | |
| 11708 | | > show #!19 models |
| 11709 | | |
| 11710 | | > hide #!19 models |
| 11711 | | |
| 11712 | | > hide #!18 models |
| 11713 | | |
| 11714 | | > show #!26 models |
| 11715 | | |
| 11716 | | > hide #!26 models |
| 11717 | | |
| 11718 | | > show #!25 models |
| 11719 | | |
| 11720 | | > select |
| 11721 | | |
| 11722 | | 98584 atoms, 101182 bonds, 60 pseudobonds, 11352 residues, 56 models selected |
| 11723 | | |
| 11724 | | > select #25 |
| 11725 | | |
| 11726 | | 8304 atoms, 8568 bonds, 6 pseudobonds, 1008 residues, 2 models selected |
| 11727 | | |
| 11728 | | > ribbon style thickness 0.6 |
| 11729 | | |
| 11730 | | > select |
| 11731 | | |
| 11732 | | 98584 atoms, 101182 bonds, 60 pseudobonds, 11352 residues, 56 models selected |
| 11733 | | |
| 11734 | | > select #25,26 |
| 11735 | | |
| 11736 | | 16608 atoms, 17136 bonds, 12 pseudobonds, 2016 residues, 4 models selected |
| 11737 | | |
| 11738 | | > hide sel atoms |
| 11739 | | |
| 11740 | | > select clear |
| 11741 | | |
| 11742 | | > show #!26 models |
| 11743 | | |
| 11744 | | > hide #!26 models |
| 11745 | | |
| 11746 | | > show #!26 models |
| 11747 | | |
| 11748 | | > hide #!25 models |
| 11749 | | |
| 11750 | | > show #!25 models |
| 11751 | | |
| 11752 | | > hide #!25 models |
| 11753 | | |
| 11754 | | > hide #!26 models |
| 11755 | | |
| 11756 | | > show #!25 models |
| 11757 | | |
| 11758 | | > hide #!25 models |
| 11759 | | |
| 11760 | | > show #!26 models |
| 11761 | | |
| 11762 | | > hide #!26 models |
| 11763 | | |
| 11764 | | > show #!25 models |
| 11765 | | |
| 11766 | | > hide #!25 models |
| 11767 | | |
| 11768 | | > show #!19 models |
| 11769 | | |
| 11770 | | > close #26 |
| 11771 | | |
| 11772 | | > close #25 |
| 11773 | | |
| 11774 | | > show #!18 models |
| 11775 | | |
| 11776 | | > hide #!19 models |
| 11777 | | |
| 11778 | | > show #!24 models |
| 11779 | | |
| 11780 | | > show #!19 models |
| 11781 | | |
| 11782 | | > hide #!18 models |
| 11783 | | |
| 11784 | | > hide #!24 models |
| 11785 | | |
| 11786 | | > select add #19 |
| 11787 | | |
| 11788 | | 8550 atoms, 8838 bonds, 6 pseudobonds, 1014 residues, 2 models selected |
| 11789 | | |
| 11790 | | > mlp sel |
| 11791 | | |
| 11792 | | Map values for surface "231009_CBX_HC_185.pdb_A SES surface": minimum -27.25, |
| 11793 | | mean 0.8939, maximum 24.32 |
| 11794 | | Map values for surface "231009_CBX_HC_185.pdb_B SES surface": minimum -27.68, |
| 11795 | | mean 0.9203, maximum 24.56 |
| 11796 | | Map values for surface "231009_CBX_HC_185.pdb_C SES surface": minimum -27.75, |
| 11797 | | mean 0.9056, maximum 24.54 |
| 11798 | | Map values for surface "231009_CBX_HC_185.pdb_D SES surface": minimum -27.64, |
| 11799 | | mean 0.9218, maximum 24.13 |
| 11800 | | Map values for surface "231009_CBX_HC_185.pdb_E SES surface": minimum -27.6, |
| 11801 | | mean 0.8945, maximum 23.94 |
| 11802 | | Map values for surface "231009_CBX_HC_185.pdb_F SES surface": minimum -26.79, |
| 11803 | | mean 0.9031, maximum 24.3 |
| 11804 | | To also show corresponding color key, enter the above mlp command and add key |
| 11805 | | true |
| 11806 | | |
| 11807 | | > select clear |
| 11808 | | |
| 11809 | | > show #!20 models |
| 11810 | | |
| 11811 | | > hide #!19 models |
| 11812 | | |
| 11813 | | > mlp #!20 |
| 11814 | | |
| 11815 | | Map values for surface "230926_MBCD_HC_10.pdb_A SES surface": minimum -28.57, |
| 11816 | | mean -0.03631, maximum 25.41 |
| 11817 | | Map values for surface "230926_MBCD_HC_10.pdb_B SES surface": minimum -28, |
| 11818 | | mean -0.02772, maximum 25.92 |
| 11819 | | Map values for surface "230926_MBCD_HC_10.pdb_C SES surface": minimum -28.3, |
| 11820 | | mean -0.1041, maximum 25.64 |
| 11821 | | Map values for surface "230926_MBCD_HC_10.pdb_D SES surface": minimum -28.28, |
| 11822 | | mean -0.05149, maximum 25.19 |
| 11823 | | Map values for surface "230926_MBCD_HC_10.pdb_E SES surface": minimum -27.35, |
| 11824 | | mean -0.03333, maximum 24.83 |
| 11825 | | Map values for surface "230926_MBCD_HC_10.pdb_F SES surface": minimum -27.13, |
| 11826 | | mean -0.07316, maximum 24.98 |
| 11827 | | To also show corresponding color key, enter the above mlp command and add key |
| 11828 | | true |
| 11829 | | |
| 11830 | | > hide #!20 models |
| 11831 | | |
| 11832 | | > show #!19 models |
| 11833 | | |
| 11834 | | > hide #!19 models |
| 11835 | | |
| 11836 | | > show #!18 models |
| 11837 | | |
| 11838 | | > mlp #!18 |
| 11839 | | |
| 11840 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 11841 | | mean 0.2399, maximum 23.77 |
| 11842 | | Map values for surface "230904_Chol_HC_150.pdb_B SES surface": minimum -28.02, |
| 11843 | | mean 0.1571, maximum 25.31 |
| 11844 | | Map values for surface "230904_Chol_HC_150.pdb_C SES surface": minimum -27.97, |
| 11845 | | mean 0.1452, maximum 24.75 |
| 11846 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.84, |
| 11847 | | mean 0.223, maximum 24.9 |
| 11848 | | Map values for surface "230904_Chol_HC_150.pdb_E SES surface": minimum -27.89, |
| 11849 | | mean 0.1406, maximum 24.79 |
| 11850 | | Map values for surface "230904_Chol_HC_150.pdb_F SES surface": minimum -27.69, |
| 11851 | | mean 0.1485, maximum 25.26 |
| 11852 | | To also show corresponding color key, enter the above mlp command and add key |
| 11853 | | true |
| 11854 | | |
| 11855 | | > undo |
| 11856 | | |
| 11857 | | [Repeated 1 time(s)] |
| 11858 | | |
| 11859 | | > show #!18 models |
| 11860 | | |
| 11861 | | > hide #!18 models |
| 11862 | | |
| 11863 | | > show #!18 models |
| 11864 | | |
| 11865 | | > select #18 |
| 11866 | | |
| 11867 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 11868 | | |
| 11869 | | > hide sel surfaces |
| 11870 | | |
| 11871 | | > select #18/a,d |
| 11872 | | |
| 11873 | | 3800 atoms, 3884 bonds, 2 pseudobonds, 412 residues, 2 models selected |
| 11874 | | |
| 11875 | | > show sel surfaces |
| 11876 | | |
| 11877 | | > mlp sel |
| 11878 | | |
| 11879 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 11880 | | mean 0.2399, maximum 23.77 |
| 11881 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.84, |
| 11882 | | mean 0.223, maximum 24.9 |
| 11883 | | To also show corresponding color key, enter the above mlp command and add key |
| 11884 | | true |
| 11885 | | |
| 11886 | | > select clear |
| 11887 | | |
| 11888 | | > show #!17 models |
| 11889 | | |
| 11890 | | > hide #!18 models |
| 11891 | | |
| 11892 | | > select #17 |
| 11893 | | |
| 11894 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 11895 | | |
| 11896 | | > hide sel surfaces |
| 11897 | | |
| 11898 | | > select #17/b,c,e,f |
| 11899 | | |
| 11900 | | 7684 atoms, 7816 bonds, 4 pseudobonds, 844 residues, 2 models selected |
| 11901 | | |
| 11902 | | > hide sel ribbons |
| 11903 | | |
| 11904 | | > select #17/a,d |
| 11905 | | |
| 11906 | | 3842 atoms, 3908 bonds, 2 pseudobonds, 422 residues, 2 models selected |
| 11907 | | |
| 11908 | | > show sel surfaces |
| 11909 | | |
| 11910 | | > coulombic sel |
| 11911 | | |
| 11912 | | Using Amber 20 recommended default charges and atom types for standard |
| 11913 | | residues |
| 11914 | | Coulombic values for 231006_PIP2_HC_90.pdb_A SES surface #17.2: minimum, |
| 11915 | | -10.90, mean 0.18, maximum 12.83 |
| 11916 | | Coulombic values for 231006_PIP2_HC_90.pdb_D SES surface #17.5: minimum, |
| 11917 | | -10.87, mean 0.17, maximum 12.73 |
| 11918 | | To also show corresponding color key, enter the above coulombic command and |
| 11919 | | add key true |
| 11920 | | |
| 11921 | | > select #17 |
| 11922 | | |
| 11923 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 11924 | | |
| 11925 | | > hide sel surfaces |
| 11926 | | |
| 11927 | | > show sel atoms |
| 11928 | | |
| 11929 | | > style sel stick |
| 11930 | | |
| 11931 | | Changed 11526 atom styles |
| 11932 | | |
| 11933 | | > color sel byhetero |
| 11934 | | |
| 11935 | | > select #17/b,c,e,f |
| 11936 | | |
| 11937 | | 7684 atoms, 7816 bonds, 4 pseudobonds, 844 residues, 2 models selected |
| 11938 | | |
| 11939 | | > hide sel atoms |
| 11940 | | |
| 11941 | | > view matrix models |
| 11942 | | > #17,0.89118,-0.15271,0.42717,-89.601,0.13778,0.98827,0.065846,-93.665,-0.43222,0.00017537,0.90177,18.875 |
| 11943 | | |
| 11944 | | > select #17/a,d |
| 11945 | | |
| 11946 | | 3842 atoms, 3908 bonds, 2 pseudobonds, 422 residues, 2 models selected |
| 11947 | | |
| 11948 | | > show sel surfaces |
| 11949 | | |
| 11950 | | > coulombic sel |
| 11951 | | |
| 11952 | | Coulombic values for 231006_PIP2_HC_90.pdb_A SES surface #17.2: minimum, |
| 11953 | | -10.90, mean 0.18, maximum 12.83 |
| 11954 | | Coulombic values for 231006_PIP2_HC_90.pdb_D SES surface #17.5: minimum, |
| 11955 | | -10.87, mean 0.17, maximum 12.73 |
| 11956 | | To also show corresponding color key, enter the above coulombic command and |
| 11957 | | add key true |
| 11958 | | |
| 11959 | | > select #17/a,d:1-24 |
| 11960 | | |
| 11961 | | 332 atoms, 336 bonds, 46 residues, 1 model selected |
| 11962 | | |
| 11963 | | > hide sel surfaces |
| 11964 | | |
| 11965 | | > select #17/a,d:1-24 |
| 11966 | | |
| 11967 | | 332 atoms, 336 bonds, 46 residues, 1 model selected |
| 11968 | | |
| 11969 | | > show sel surfaces |
| 11970 | | |
| 11971 | | > select #17/a,d:1-10 |
| 11972 | | |
| 11973 | | 132 atoms, 134 bonds, 18 residues, 1 model selected |
| 11974 | | |
| 11975 | | > hide sel surfaces |
| 11976 | | |
| 11977 | | > show sel surfaces |
| 11978 | | |
| 11979 | | > select clear |
| 11980 | | |
| 11981 | | > select add #17 |
| 11982 | | |
| 11983 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 11984 | | |
| 11985 | | > hide sel surfaces |
| 11986 | | |
| 11987 | | > select clear |
| 11988 | | |
| 11989 | | > select add #17 |
| 11990 | | |
| 11991 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 11992 | | |
| 11993 | | > hide sel atoms |
| 11994 | | |
| 11995 | | > undo |
| 11996 | | |
| 11997 | | > hide sel atoms |
| 11998 | | |
| 11999 | | > select ::name="PIO" |
| 12000 | | |
| 12001 | | 282 atoms, 282 bonds, 6 residues, 1 model selected |
| 12002 | | |
| 12003 | | > show sel atoms |
| 12004 | | |
| 12005 | | > select clear |
| 12006 | | |
| 12007 | | > save "C:/Users/OJS/OneDrive - |
| 12008 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 12009 | | |
| 12010 | | > select #17/b,c,e,f |
| 12011 | | |
| 12012 | | 7684 atoms, 7816 bonds, 4 pseudobonds, 844 residues, 2 models selected |
| 12013 | | |
| 12014 | | > hide sel atoms |
| 12015 | | |
| 12016 | | > select clear |
| 12017 | | |
| 12018 | | [Repeated 1 time(s)] |
| 12019 | | |
| 12020 | | > show #!21 models |
| 12021 | | |
| 12022 | | > hide #!21 models |
| 12023 | | |
| 12024 | | > show #!21 models |
| 12025 | | |
| 12026 | | > show #!20 models |
| 12027 | | |
| 12028 | | > hide #!20 models |
| 12029 | | |
| 12030 | | > ui tool show "Fit in Map" |
| 12031 | | |
| 12032 | | > fitmap #21 inMap #9 |
| 12033 | | |
| 12034 | | Fit molecule 231009_From25_real_space_refined_027.pdb (#21) to map |
| 12035 | | N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) using 8706 atoms |
| 12036 | | average map value = 0.5856, steps = 48 |
| 12037 | | shifted from previous position = 0.132 |
| 12038 | | rotated from previous position = 0.0452 degrees |
| 12039 | | atoms outside contour = 2555, contour level = 0.32943 |
| 12040 | | |
| 12041 | | Position of 231009_From25_real_space_refined_027.pdb (#21) relative to |
| 12042 | | N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 12043 | | Matrix rotation and translation |
| 12044 | | -0.49881499 -0.86670840 0.00040190 333.00119717 |
| 12045 | | 0.86670849 -0.49881496 0.00016782 88.99067360 |
| 12046 | | 0.00005503 0.00043205 0.99999990 -0.14454104 |
| 12047 | | Axis 0.00015243 0.00020011 0.99999997 |
| 12048 | | Axis point 140.77062126 140.77640419 0.00000000 |
| 12049 | | Rotation angle (degrees) 119.92163353 |
| 12050 | | Shift along axis -0.07597335 |
| 12051 | | |
| 12052 | | |
| 12053 | | > select add #21 |
| 12054 | | |
| 12055 | | 8706 atoms, 8964 bonds, 6 pseudobonds, 1062 residues, 2 models selected |
| 12056 | | |
| 12057 | | > hide #!17 models |
| 12058 | | |
| 12059 | | > show #!18 models |
| 12060 | | |
| 12061 | | > hide #!18 models |
| 12062 | | |
| 12063 | | > show #!19 models |
| 12064 | | |
| 12065 | | > hide sel surfaces |
| 12066 | | |
| 12067 | | > select add #19 |
| 12068 | | |
| 12069 | | 17256 atoms, 17802 bonds, 12 pseudobonds, 2076 residues, 4 models selected |
| 12070 | | |
| 12071 | | > hide sel surfaces |
| 12072 | | |
| 12073 | | > fitmap #21 inMap #9 |
| 12074 | | |
| 12075 | | Fit molecule 231009_From25_real_space_refined_027.pdb (#21) to map |
| 12076 | | N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) using 8706 atoms |
| 12077 | | average map value = 0.5856, steps = 40 |
| 12078 | | shifted from previous position = 0.018 |
| 12079 | | rotated from previous position = 0.0171 degrees |
| 12080 | | atoms outside contour = 2552, contour level = 0.32943 |
| 12081 | | |
| 12082 | | Position of 231009_From25_real_space_refined_027.pdb (#21) relative to |
| 12083 | | N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 12084 | | Matrix rotation and translation |
| 12085 | | -0.49894784 -0.86663183 0.00056367 333.00382739 |
| 12086 | | 0.86663196 -0.49894793 -0.00002960 89.04113276 |
| 12087 | | 0.00030690 0.00047372 0.99999984 -0.18533346 |
| 12088 | | Axis 0.00029039 0.00014814 0.99999995 |
| 12089 | | Axis point 140.76191983 140.78535862 0.00000000 |
| 12090 | | Rotation angle (degrees) 119.93042251 |
| 12091 | | Shift along axis -0.07544115 |
| 12092 | | |
| 12093 | | |
| 12094 | | > fitmap #21 inMap #9 |
| 12095 | | |
| 12096 | | Fit molecule 231009_From25_real_space_refined_027.pdb (#21) to map |
| 12097 | | N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) using 8706 atoms |
| 12098 | | average map value = 0.5856, steps = 44 |
| 12099 | | shifted from previous position = 0.0183 |
| 12100 | | rotated from previous position = 0.0121 degrees |
| 12101 | | atoms outside contour = 2550, contour level = 0.32943 |
| 12102 | | |
| 12103 | | Position of 231009_From25_real_space_refined_027.pdb (#21) relative to |
| 12104 | | N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 12105 | | Matrix rotation and translation |
| 12106 | | -0.49911103 -0.86653791 0.00046898 333.01099065 |
| 12107 | | 0.86653800 -0.49911110 -0.00004957 89.07043372 |
| 12108 | | 0.00027702 0.00038165 0.99999988 -0.16715924 |
| 12109 | | Axis 0.00024881 0.00011076 0.99999996 |
| 12110 | | Axis point 140.76261974 140.78116041 0.00000000 |
| 12111 | | Rotation angle (degrees) 119.94120973 |
| 12112 | | Shift along axis -0.07443617 |
| 12113 | | |
| 12114 | | |
| 12115 | | > fitmap #21 inMap #9 |
| 12116 | | |
| 12117 | | Fit molecule 231009_From25_real_space_refined_027.pdb (#21) to map |
| 12118 | | N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) using 8706 atoms |
| 12119 | | average map value = 0.5856, steps = 40 |
| 12120 | | shifted from previous position = 0.0184 |
| 12121 | | rotated from previous position = 0.00607 degrees |
| 12122 | | atoms outside contour = 2552, contour level = 0.32943 |
| 12123 | | |
| 12124 | | Position of 231009_From25_real_space_refined_027.pdb (#21) relative to |
| 12125 | | N55H_POPE_C6_P58_J139_004_volume_map.mrc (#9) coordinates: |
| 12126 | | Matrix rotation and translation |
| 12127 | | -0.49906117 -0.86656658 0.00055023 333.01394615 |
| 12128 | | 0.86656671 -0.49906125 -0.00001310 89.06128702 |
| 12129 | | 0.00028595 0.00047028 0.99999984 -0.18133126 |
| 12130 | | Axis 0.00027890 0.00015249 0.99999995 |
| 12131 | | Axis point 140.76503600 140.78383528 0.00000000 |
| 12132 | | Rotation angle (degrees) 119.93791479 |
| 12133 | | Shift along axis -0.07487231 |
| 12134 | | |
| 12135 | | |
| 12136 | | > show #!18 models |
| 12137 | | |
| 12138 | | > select add #18 |
| 12139 | | |
| 12140 | | 28656 atoms, 29454 bonds, 18 pseudobonds, 3312 residues, 12 models selected |
| 12141 | | |
| 12142 | | > hide sel surfaces |
| 12143 | | |
| 12144 | | > select #17,18,19,20,21 |
| 12145 | | |
| 12146 | | 51966 atoms, 53244 bonds, 30 pseudobonds, 5814 residues, 10 models selected |
| 12147 | | |
| 12148 | | > show sel ribbons |
| 12149 | | |
| 12150 | | > select clear |
| 12151 | | |
| 12152 | | > save "C:/Users/OJS/OneDrive - |
| 12153 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 12154 | | |
| 12155 | | > hide #!18 models |
| 12156 | | |
| 12157 | | > show #!18 models |
| 12158 | | |
| 12159 | | > hide #!21 models |
| 12160 | | |
| 12161 | | > show #!7 models |
| 12162 | | |
| 12163 | | > hide #!7 models |
| 12164 | | |
| 12165 | | > show #!9 models |
| 12166 | | |
| 12167 | | > hide #!9 models |
| 12168 | | |
| 12169 | | > color #21 #aa5500ff |
| 12170 | | |
| 12171 | | > show #!21 models |
| 12172 | | |
| 12173 | | > hide #!19 models |
| 12174 | | |
| 12175 | | > hide #!18 models |
| 12176 | | |
| 12177 | | > show #!9 models |
| 12178 | | |
| 12179 | | > show #!10 models |
| 12180 | | |
| 12181 | | > hide #!10 models |
| 12182 | | |
| 12183 | | > volume #9 level 0.274 |
| 12184 | | |
| 12185 | | > hide #!9 models |
| 12186 | | |
| 12187 | | > show #!11 models |
| 12188 | | |
| 12189 | | > hide #!11 models |
| 12190 | | |
| 12191 | | > show #!1 models |
| 12192 | | |
| 12193 | | > hide #!1 models |
| 12194 | | |
| 12195 | | > hide #!21 models |
| 12196 | | |
| 12197 | | > show #!18 models |
| 12198 | | |
| 12199 | | > show #!19 models |
| 12200 | | |
| 12201 | | > hide #!19 models |
| 12202 | | |
| 12203 | | > hide #!18 models |
| 12204 | | |
| 12205 | | > show #!23 models |
| 12206 | | |
| 12207 | | > hide #!23 models |
| 12208 | | |
| 12209 | | > show #!20 models |
| 12210 | | |
| 12211 | | > hide #!20 models |
| 12212 | | |
| 12213 | | > show #!20 models |
| 12214 | | |
| 12215 | | > select add #20 |
| 12216 | | |
| 12217 | | 11784 atoms, 12066 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 12218 | | |
| 12219 | | > select subtract #20 |
| 12220 | | |
| 12221 | | 6 models selected |
| 12222 | | |
| 12223 | | > hide #!20 surfaces |
| 12224 | | |
| 12225 | | > select #20/b,c,e,f |
| 12226 | | |
| 12227 | | 7856 atoms, 8044 bonds, 4 pseudobonds, 824 residues, 2 models selected |
| 12228 | | |
| 12229 | | > hide sel ribbons |
| 12230 | | |
| 12231 | | > hide sel atoms |
| 12232 | | |
| 12233 | | > show #!18 models |
| 12234 | | |
| 12235 | | > select #18/b,c,e,f |
| 12236 | | |
| 12237 | | 7600 atoms, 7768 bonds, 4 pseudobonds, 824 residues, 2 models selected |
| 12238 | | |
| 12239 | | > hide sel ribbons |
| 12240 | | |
| 12241 | | > hide sel atoms |
| 12242 | | |
| 12243 | | > hide #!18 models |
| 12244 | | |
| 12245 | | > show #!18 models |
| 12246 | | |
| 12247 | | > hide #!18 models |
| 12248 | | |
| 12249 | | > show #!18 models |
| 12250 | | |
| 12251 | | > hide #!20 models |
| 12252 | | |
| 12253 | | > show #!3 models |
| 12254 | | |
| 12255 | | > hide #!3 models |
| 12256 | | |
| 12257 | | > show #!3 models |
| 12258 | | |
| 12259 | | > hide #!3 models |
| 12260 | | |
| 12261 | | > show #!4 models |
| 12262 | | |
| 12263 | | > volume #4 level 0.1208 |
| 12264 | | |
| 12265 | | > volume #4 level 0.19 |
| 12266 | | |
| 12267 | | > hide #!4 models |
| 12268 | | |
| 12269 | | > show #!8 models |
| 12270 | | |
| 12271 | | > hide #!8 models |
| 12272 | | |
| 12273 | | > show #!7 models |
| 12274 | | |
| 12275 | | > hide #!7 models |
| 12276 | | |
| 12277 | | > show #!20 models |
| 12278 | | |
| 12279 | | > select #20,18 |
| 12280 | | |
| 12281 | | 23184 atoms, 23718 bonds, 12 pseudobonds, 2472 residues, 4 models selected |
| 12282 | | |
| 12283 | | > select #20,18:30 |
| 12284 | | |
| 12285 | | 132 atoms, 132 bonds, 12 residues, 2 models selected |
| 12286 | | |
| 12287 | | > select #20,18/a,d |
| 12288 | | |
| 12289 | | 7728 atoms, 7906 bonds, 4 pseudobonds, 824 residues, 4 models selected |
| 12290 | | |
| 12291 | | > select #20,18:30 |
| 12292 | | |
| 12293 | | 132 atoms, 132 bonds, 12 residues, 2 models selected |
| 12294 | | |
| 12295 | | > show sel atoms |
| 12296 | | |
| 12297 | | > select #18/A:7 |
| 12298 | | |
| 12299 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 12300 | | |
| 12301 | | > show sel atoms |
| 12302 | | |
| 12303 | | > select clear |
| 12304 | | |
| 12305 | | > select #18/A:15 |
| 12306 | | |
| 12307 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 12308 | | |
| 12309 | | > show sel atoms |
| 12310 | | |
| 12311 | | > hide #!20 models |
| 12312 | | |
| 12313 | | > select #18/A:27 |
| 12314 | | |
| 12315 | | 6 atoms, 5 bonds, 1 residue, 1 model selected |
| 12316 | | |
| 12317 | | > select #18/a |
| 12318 | | |
| 12319 | | 1900 atoms, 1942 bonds, 1 pseudobond, 206 residues, 2 models selected |
| 12320 | | |
| 12321 | | > show sel atoms |
| 12322 | | |
| 12323 | | > select clear |
| 12324 | | |
| 12325 | | > show #!20 models |
| 12326 | | |
| 12327 | | > select ::name="6OU" |
| 12328 | | |
| 12329 | | 4704 atoms, 4608 bonds, 96 residues, 4 models selected |
| 12330 | | |
| 12331 | | > help help:user |
| 12332 | | |
| 12333 | | > hide sel atoms |
| 12334 | | |
| 12335 | | > select clear |
| 12336 | | |
| 12337 | | > hide #!20 models |
| 12338 | | |
| 12339 | | > show #!20 models |
| 12340 | | |
| 12341 | | > select #20/a |
| 12342 | | |
| 12343 | | 1964 atoms, 2011 bonds, 1 pseudobond, 206 residues, 2 models selected |
| 12344 | | |
| 12345 | | > show sel atoms |
| 12346 | | |
| 12347 | | > select clear |
| 12348 | | |
| 12349 | | > select #20 |
| 12350 | | |
| 12351 | | 11784 atoms, 12066 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 12352 | | |
| 12353 | | > color sel byhetero |
| 12354 | | |
| 12355 | | > select ::name="6OU" |
| 12356 | | |
| 12357 | | 4704 atoms, 4608 bonds, 96 residues, 4 models selected |
| 12358 | | |
| 12359 | | > hide sel atoms |
| 12360 | | |
| 12361 | | > select clear |
| 12362 | | |
| 12363 | | > select ::name="6OU" |
| 12364 | | |
| 12365 | | 4704 atoms, 4608 bonds, 96 residues, 4 models selected |
| 12366 | | |
| 12367 | | > show sel atoms |
| 12368 | | |
| 12369 | | > select #20/b,c,e,f |
| 12370 | | |
| 12371 | | 7856 atoms, 8044 bonds, 4 pseudobonds, 824 residues, 2 models selected |
| 12372 | | |
| 12373 | | > hide sel atoms |
| 12374 | | |
| 12375 | | > hide #!20 models |
| 12376 | | |
| 12377 | | > show #!20 models |
| 12378 | | |
| 12379 | | > hide #!20 models |
| 12380 | | |
| 12381 | | > show #!20 models |
| 12382 | | |
| 12383 | | > hide #!18 models |
| 12384 | | |
| 12385 | | > select #20/b |
| 12386 | | |
| 12387 | | 1964 atoms, 2011 bonds, 1 pseudobond, 206 residues, 2 models selected |
| 12388 | | |
| 12389 | | > show sel ribbons |
| 12390 | | |
| 12391 | | > show sel atoms |
| 12392 | | |
| 12393 | | > show #!18 models |
| 12394 | | |
| 12395 | | > show #!17 models |
| 12396 | | |
| 12397 | | > select add #17 |
| 12398 | | |
| 12399 | | 13490 atoms, 13735 bonds, 7 pseudobonds, 1472 residues, 5 models selected |
| 12400 | | |
| 12401 | | > fitmap #17 inMap #1 |
| 12402 | | |
| 12403 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 12404 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 12405 | | average map value = 0.07176, steps = 100 |
| 12406 | | shifted from previous position = 0.97 |
| 12407 | | rotated from previous position = 4.14 degrees |
| 12408 | | atoms outside contour = 9330, contour level = 0.12324 |
| 12409 | | |
| 12410 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 12411 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 12412 | | Matrix rotation and translation |
| 12413 | | 0.43716680 0.87933724 0.18881531 -85.41819673 |
| 12414 | | -0.76178368 0.47363148 -0.44199418 293.02168898 |
| 12415 | | -0.47809082 0.04938877 0.87692071 93.64250597 |
| 12416 | | Axis 0.26729691 0.36277601 -0.89271828 |
| 12417 | | Axis point 220.22249076 238.05740158 0.00000000 |
| 12418 | | Rotation angle (degrees) 66.80513742 |
| 12419 | | Shift along axis -0.12715882 |
| 12420 | | |
| 12421 | | |
| 12422 | | > ui mousemode right "rotate selected models" |
| 12423 | | |
| 12424 | | > view matrix models |
| 12425 | | > #20,0.87426,0.40254,-0.27135,-2.5398,-0.37324,0.91478,0.15452,34.893,0.31042,-0.033811,0.95,-25.534,#17,0.95013,0.24343,0.1949,-125.69,-0.24579,0.96924,-0.012398,-11.758,-0.19192,-0.036123,0.98075,-29.453 |
| 12426 | | |
| 12427 | | > select add #20 |
| 12428 | | |
| 12429 | | 23310 atoms, 23790 bonds, 12 pseudobonds, 2502 residues, 11 models selected |
| 12430 | | |
| 12431 | | > select subtract #20 |
| 12432 | | |
| 12433 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 14 models selected |
| 12434 | | |
| 12435 | | > select clear |
| 12436 | | |
| 12437 | | > undo |
| 12438 | | |
| 12439 | | [Repeated 1 time(s)] |
| 12440 | | |
| 12441 | | > select clear |
| 12442 | | |
| 12443 | | > select add #20 |
| 12444 | | |
| 12445 | | 11784 atoms, 12066 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 12446 | | |
| 12447 | | > hide #!18 models |
| 12448 | | |
| 12449 | | > hide #!17 models |
| 12450 | | |
| 12451 | | > show #!7 models |
| 12452 | | |
| 12453 | | > hide #!7 models |
| 12454 | | |
| 12455 | | > show #!3 models |
| 12456 | | |
| 12457 | | > hide #!3 models |
| 12458 | | |
| 12459 | | > show #!3 models |
| 12460 | | |
| 12461 | | > hide #!3 models |
| 12462 | | |
| 12463 | | > show #!18 models |
| 12464 | | |
| 12465 | | > view matrix models |
| 12466 | | > #20,0.98567,0.12363,0.11473,-22.214,-0.10818,0.98528,-0.13234,27.816,-0.1294,0.11803,0.98454,1.1307 |
| 12467 | | |
| 12468 | | > fitmap #20 inMap #7 |
| 12469 | | |
| 12470 | | Fit molecule 230926_MBCD_HC_10.pdb (#20) to map |
| 12471 | | MBCD_P41_J50_013_volume_map.mrc (#7) using 11784 atoms |
| 12472 | | average map value = 0.1298, steps = 112 |
| 12473 | | shifted from previous position = 2.33 |
| 12474 | | rotated from previous position = 12.1 degrees |
| 12475 | | atoms outside contour = 5794, contour level = 0.11674 |
| 12476 | | |
| 12477 | | Position of 230926_MBCD_HC_10.pdb (#20) relative to |
| 12478 | | MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 12479 | | Matrix rotation and translation |
| 12480 | | 0.99999995 0.00032196 0.00004132 -0.03936431 |
| 12481 | | -0.00032196 0.99999995 -0.00005833 0.04120307 |
| 12482 | | -0.00004134 0.00005832 1.00000000 -0.01066129 |
| 12483 | | Axis 0.17684872 0.12530643 -0.97622888 |
| 12484 | | Axis point 124.60457629 127.01376510 0.00000000 |
| 12485 | | Rotation angle (degrees) 0.01889610 |
| 12486 | | Shift along axis 0.00860934 |
| 12487 | | |
| 12488 | | |
| 12489 | | > select clear |
| 12490 | | |
| 12491 | | > hide #!20 models |
| 12492 | | |
| 12493 | | > show #!20 models |
| 12494 | | |
| 12495 | | > hide #!18 models |
| 12496 | | |
| 12497 | | > show #!18 models |
| 12498 | | |
| 12499 | | > hide #!18 models |
| 12500 | | |
| 12501 | | > show #!18 models |
| 12502 | | |
| 12503 | | > hide #!18 models |
| 12504 | | |
| 12505 | | > show #!18 models |
| 12506 | | |
| 12507 | | > hide #!18 models |
| 12508 | | |
| 12509 | | > show #!18 models |
| 12510 | | |
| 12511 | | > hide #!18 models |
| 12512 | | |
| 12513 | | > show #!18 models |
| 12514 | | |
| 12515 | | > select #18 |
| 12516 | | |
| 12517 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 12518 | | |
| 12519 | | > select ::name="6OU" |
| 12520 | | |
| 12521 | | 4704 atoms, 4608 bonds, 96 residues, 4 models selected |
| 12522 | | |
| 12523 | | > show sel atoms |
| 12524 | | |
| 12525 | | > select clear |
| 12526 | | |
| 12527 | | > hide #!20 models |
| 12528 | | |
| 12529 | | > select #18/b,c,e |
| 12530 | | |
| 12531 | | 5700 atoms, 5826 bonds, 3 pseudobonds, 618 residues, 2 models selected |
| 12532 | | |
| 12533 | | > hide sel atoms |
| 12534 | | |
| 12535 | | > select ::name="PTY" |
| 12536 | | |
| 12537 | | 594 atoms, 576 bonds, 18 residues, 3 models selected |
| 12538 | | |
| 12539 | | > select clear |
| 12540 | | |
| 12541 | | > show #!20 models |
| 12542 | | |
| 12543 | | > open |
| 12544 | | > C:/Users/OJS/Desktop/Phenix/230901_MBCD_Chol_N55H/2301009_From10_POPEHEAD.pdb |
| 12545 | | |
| 12546 | | Summary of feedback from opening |
| 12547 | | C:/Users/OJS/Desktop/Phenix/230901_MBCD_Chol_N55H/2301009_From10_POPEHEAD.pdb |
| 12548 | | --- |
| 12549 | | warnings | Duplicate atom serial number found: 5893 |
| 12550 | | Duplicate atom serial number found: 5894 |
| 12551 | | Duplicate atom serial number found: 5895 |
| 12552 | | Duplicate atom serial number found: 5896 |
| 12553 | | Duplicate atom serial number found: 5897 |
| 12554 | | 9815 messages similar to the above omitted |
| 12555 | | |
| 12556 | | Chain information for 2301009_From10_POPEHEAD.pdb #25 |
| 12557 | | --- |
| 12558 | | Chain | Description |
| 12559 | | A B C D E F | No description available |
| 12560 | | |
| 12561 | | |
| 12562 | | > hide #!20 models |
| 12563 | | |
| 12564 | | > hide #!18 models |
| 12565 | | |
| 12566 | | > color #25 lime |
| 12567 | | |
| 12568 | | > select add #25 |
| 12569 | | |
| 12570 | | 11784 atoms, 12054 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 12571 | | |
| 12572 | | > hide sel atoms |
| 12573 | | |
| 12574 | | > show sel cartoons |
| 12575 | | |
| 12576 | | > show #!7 models |
| 12577 | | |
| 12578 | | > select |
| 12579 | | > ::name="6OU"::name="CBO"::name="CLR"::name="MC3"::name="PIO"::name="PTY" |
| 12580 | | |
| 12581 | | 9942 atoms, 9816 bonds, 294 residues, 6 models selected |
| 12582 | | |
| 12583 | | > show sel atoms |
| 12584 | | |
| 12585 | | > color sel byhetero |
| 12586 | | |
| 12587 | | > select clear |
| 12588 | | |
| 12589 | | > hide #!7 models |
| 12590 | | |
| 12591 | | > show #!18 models |
| 12592 | | |
| 12593 | | > show #!20 models |
| 12594 | | |
| 12595 | | > hide #!20 models |
| 12596 | | |
| 12597 | | > hide #!18 models |
| 12598 | | |
| 12599 | | > show #!17 models |
| 12600 | | |
| 12601 | | > hide #!25 models |
| 12602 | | |
| 12603 | | > select |
| 12604 | | > ::name="6OU"::name="CBO"::name="CLR"::name="MC3"::name="PIO"::name="PTY" |
| 12605 | | |
| 12606 | | 9942 atoms, 9816 bonds, 294 residues, 6 models selected |
| 12607 | | |
| 12608 | | > show sel atoms |
| 12609 | | |
| 12610 | | > select clear |
| 12611 | | |
| 12612 | | > show #!18 models |
| 12613 | | |
| 12614 | | > select add #17 |
| 12615 | | |
| 12616 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 12617 | | |
| 12618 | | > fitmap #17 inMap #1 |
| 12619 | | |
| 12620 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 12621 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 12622 | | average map value = 0.07335, steps = 112 |
| 12623 | | shifted from previous position = 2.45 |
| 12624 | | rotated from previous position = 5.97 degrees |
| 12625 | | atoms outside contour = 9303, contour level = 0.12324 |
| 12626 | | |
| 12627 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 12628 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 12629 | | Matrix rotation and translation |
| 12630 | | 0.07402966 0.99644500 0.04021172 -18.54660546 |
| 12631 | | -0.99327025 0.07727530 -0.08627143 336.88328831 |
| 12632 | | -0.08907211 -0.03355446 0.99545983 23.15033210 |
| 12633 | | Axis 0.02642974 0.06481667 -0.99754713 |
| 12634 | | Axis point 172.83135861 179.17407947 0.00000000 |
| 12635 | | Rotation angle (degrees) 85.79171561 |
| 12636 | | Shift along axis -1.74807722 |
| 12637 | | |
| 12638 | | |
| 12639 | | > ui mousemode right "rotate selected models" |
| 12640 | | |
| 12641 | | > view matrix models |
| 12642 | | > #17,0.97936,-0.14347,-0.14238,-5.7938,0.089552,0.93948,-0.3307,-9.6199,0.18121,0.31113,0.93293,-141.54 |
| 12643 | | |
| 12644 | | > view matrix models |
| 12645 | | > #17,0.95021,-0.3093,0.037966,-3.809,0.30924,0.92087,-0.23742,-59.803,0.038472,0.23733,0.97067,-111.32 |
| 12646 | | |
| 12647 | | > view matrix models |
| 12648 | | > #17,0.89573,-0.44248,0.043242,27.107,0.44446,0.89359,-0.062881,-108.19,-0.010817,0.075544,0.99708,-80.072 |
| 12649 | | |
| 12650 | | > fitmap #17 inMap #1 |
| 12651 | | |
| 12652 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 12653 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 12654 | | average map value = 0.07812, steps = 92 |
| 12655 | | shifted from previous position = 3.72 |
| 12656 | | rotated from previous position = 5.23 degrees |
| 12657 | | atoms outside contour = 9110, contour level = 0.12324 |
| 12658 | | |
| 12659 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 12660 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 12661 | | Matrix rotation and translation |
| 12662 | | 0.66957884 0.74242814 0.02155522 -71.86318179 |
| 12663 | | -0.74109869 0.66974576 -0.04704617 183.65657547 |
| 12664 | | -0.04936492 0.01552659 0.99866012 6.22775039 |
| 12665 | | Axis 0.04209293 0.04770824 -0.99797400 |
| 12666 | | Axis point 170.84211235 172.80177961 0.00000000 |
| 12667 | | Rotation angle (degrees) 48.01065757 |
| 12668 | | Shift along axis -0.47813322 |
| 12669 | | |
| 12670 | | |
| 12671 | | > view matrix models |
| 12672 | | > #17,0.84862,-0.36767,-0.38034,98.914,0.43958,0.89011,0.12032,-138.09,0.29431,-0.2693,0.91699,-60.844 |
| 12673 | | |
| 12674 | | > view matrix models |
| 12675 | | > #17,0.94575,0.16677,-0.27881,-25.702,-0.066436,0.93933,0.33651,-97.878,0.31802,-0.29973,0.89946,-56.682 |
| 12676 | | |
| 12677 | | > view matrix models |
| 12678 | | > #17,0.92214,0.21324,-0.32279,-21.998,-0.2274,0.97378,-0.0063197,-17.33,0.31298,0.079228,0.94645,-128.2 |
| 12679 | | |
| 12680 | | > view matrix models |
| 12681 | | > #17,0.83467,0.19445,-0.51528,29.201,-0.3504,0.90931,-0.22444,52.061,0.42491,0.36789,0.82711,-175.57 |
| 12682 | | |
| 12683 | | > ui mousemode right "translate selected models" |
| 12684 | | |
| 12685 | | > view matrix models |
| 12686 | | > #17,0.83467,0.19445,-0.51528,22.682,-0.3504,0.90931,-0.22444,48.046,0.42491,0.36789,0.82711,-175 |
| 12687 | | |
| 12688 | | > fitmap #17 inMap #1 |
| 12689 | | |
| 12690 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 12691 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 12692 | | average map value = 0.06975, steps = 96 |
| 12693 | | shifted from previous position = 3.12 |
| 12694 | | rotated from previous position = 3.42 degrees |
| 12695 | | atoms outside contour = 9462, contour level = 0.12324 |
| 12696 | | |
| 12697 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 12698 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 12699 | | Matrix rotation and translation |
| 12700 | | -0.05668158 0.94151932 -0.33215744 72.14363881 |
| 12701 | | -0.91442852 0.08458668 0.39581003 243.59131623 |
| 12702 | | 0.40075888 0.32616938 0.85615762 -96.38639745 |
| 12703 | | Axis -0.03487898 -0.36707543 -0.92953703 |
| 12704 | | Axis point 161.08524950 104.25035395 0.00000000 |
| 12705 | | Rotation angle (degrees) 93.32322155 |
| 12706 | | Shift along axis -2.33795941 |
| 12707 | | |
| 12708 | | |
| 12709 | | > hide #!18 models |
| 12710 | | |
| 12711 | | > show #!1 models |
| 12712 | | |
| 12713 | | > view matrix models |
| 12714 | | > #17,0.8457,0.22774,-0.48262,5.0618,-0.35238,0.91748,-0.18453,39.918,0.40077,0.32612,0.85617,-164.88 |
| 12715 | | |
| 12716 | | > view matrix models |
| 12717 | | > #17,0.8457,0.22774,-0.48262,-5.6919,-0.35238,0.91748,-0.18453,42.428,0.40077,0.32612,0.85617,-168.9 |
| 12718 | | |
| 12719 | | > ui mousemode right "rotate selected models" |
| 12720 | | |
| 12721 | | > view matrix models |
| 12722 | | > #17,0.89294,0.15756,-0.42171,-12.299,-0.26426,0.94183,-0.20767,27.344,0.36445,0.29688,0.88263,-162.34 |
| 12723 | | |
| 12724 | | > view matrix models |
| 12725 | | > #17,0.87103,0.21801,-0.44021,-15.646,-0.17947,0.97541,0.12795,-50.582,0.45728,-0.032444,0.88873,-123.28 |
| 12726 | | |
| 12727 | | > view matrix models |
| 12728 | | > #17,0.90901,0.11131,-0.40163,-10.643,-0.074858,0.99161,0.1054,-67.185,0.40999,-0.065749,0.90972,-113.23 |
| 12729 | | |
| 12730 | | > view matrix models |
| 12731 | | > #17,0.91035,0.02355,-0.41317,6.006,-0.12841,0.96518,-0.22791,3.8323,0.39342,0.26054,0.88167,-160.92 |
| 12732 | | |
| 12733 | | > view matrix models |
| 12734 | | > #17,0.94848,-0.11094,-0.29679,2.2879,0.034409,0.96723,-0.25157,-20.052,0.31497,0.2284,0.92121,-148.98 |
| 12735 | | |
| 12736 | | > view matrix models |
| 12737 | | > #17,0.88801,-0.18295,-0.42186,46.315,0.11788,0.97736,-0.17571,-49.003,0.44446,0.10631,0.88947,-144.77 |
| 12738 | | |
| 12739 | | > ui mousemode right "translate selected models" |
| 12740 | | |
| 12741 | | > view matrix models |
| 12742 | | > #17,0.88801,-0.18295,-0.42186,53.262,0.11788,0.97736,-0.17571,-48.255,0.44446,0.10631,0.88947,-143.56 |
| 12743 | | |
| 12744 | | > fitmap #17 inMap #1 |
| 12745 | | |
| 12746 | | Fit molecule 231006_PIP2_HC_90.pdb (#17) to map |
| 12747 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) using 11526 atoms |
| 12748 | | average map value = 0.1776, steps = 204 |
| 12749 | | shifted from previous position = 7.77 |
| 12750 | | rotated from previous position = 27.2 degrees |
| 12751 | | atoms outside contour = 3807, contour level = 0.12324 |
| 12752 | | |
| 12753 | | Position of 231006_PIP2_HC_90.pdb (#17) relative to |
| 12754 | | WT_PIP2_P68_J150_009_volume_map.mrc (#1) coordinates: |
| 12755 | | Matrix rotation and translation |
| 12756 | | 0.49939923 0.86637198 -0.00004010 -62.03278309 |
| 12757 | | -0.86637198 0.49939924 0.00002960 231.82502572 |
| 12758 | | 0.00004567 0.00001997 1.00000000 -0.00561421 |
| 12759 | | Axis -0.00000556 -0.00004950 -1.00000000 |
| 12760 | | Axis point 169.58928151 169.59148137 0.00000000 |
| 12761 | | Rotation angle (degrees) 60.03973817 |
| 12762 | | Shift along axis -0.00551651 |
| 12763 | | |
| 12764 | | |
| 12765 | | > hide #!1 models |
| 12766 | | |
| 12767 | | > show #!3 models |
| 12768 | | |
| 12769 | | > hide #!3 models |
| 12770 | | |
| 12771 | | > show #!18 models |
| 12772 | | |
| 12773 | | > show #!20 models |
| 12774 | | |
| 12775 | | > hide #!20 models |
| 12776 | | |
| 12777 | | > show #!20 models |
| 12778 | | |
| 12779 | | > hide #!20 models |
| 12780 | | |
| 12781 | | > select clear |
| 12782 | | |
| 12783 | | > hide #!18 models |
| 12784 | | |
| 12785 | | > select #17/b,c,e,f |
| 12786 | | |
| 12787 | | 7684 atoms, 7816 bonds, 4 pseudobonds, 844 residues, 2 models selected |
| 12788 | | |
| 12789 | | > hide sel ribbons |
| 12790 | | |
| 12791 | | > hide sel atoms |
| 12792 | | |
| 12793 | | > select #17/a:95-110 |
| 12794 | | |
| 12795 | | 145 atoms, 147 bonds, 16 residues, 1 model selected |
| 12796 | | |
| 12797 | | > show sel atoms |
| 12798 | | |
| 12799 | | > select clear |
| 12800 | | |
| 12801 | | > select #17/b |
| 12802 | | |
| 12803 | | 1921 atoms, 1954 bonds, 1 pseudobond, 211 residues, 2 models selected |
| 12804 | | |
| 12805 | | > show sel ribbons |
| 12806 | | |
| 12807 | | > select clear |
| 12808 | | |
| 12809 | | > morph #18,20,17 |
| 12810 | | |
| 12811 | | Computed 101 frame morph #26 |
| 12812 | | |
| 12813 | | > coordset #26 1,101 |
| 12814 | | |
| 12815 | | > select #26 |
| 12816 | | |
| 12817 | | 9582 atoms, 9858 bonds, 6 pseudobonds, 1182 residues, 2 models selected |
| 12818 | | |
| 12819 | | > hide sel atoms |
| 12820 | | |
| 12821 | | > select clear |
| 12822 | | |
| 12823 | | > morph #18,20 |
| 12824 | | |
| 12825 | | Computed 51 frame morph #27 |
| 12826 | | |
| 12827 | | > coordset #27 1,51 |
| 12828 | | |
| 12829 | | > hide #!26 models |
| 12830 | | |
| 12831 | | > close #26 |
| 12832 | | |
| 12833 | | > close #27 |
| 12834 | | |
| 12835 | | > morph #18,20 |
| 12836 | | |
| 12837 | | Computed 51 frame morph #26 |
| 12838 | | |
| 12839 | | > coordset #26 1,51 |
| 12840 | | |
| 12841 | | > open "C:/Users/OJS/OneDrive - |
| 12842 | | > korea.ac.kr/MCSB/논문/Models/Previous_Models/Nanodisc/WT-pope-chs- |
| 12843 | | > ph8/Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb" |
| 12844 | | |
| 12845 | | Summary of feedback from opening C:/Users/OJS/OneDrive - |
| 12846 | | korea.ac.kr/MCSB/논문/Models/Previous_Models/Nanodisc/WT-pope-chs-ph8/Cx43-nano- |
| 12847 | | pope-chs-pH8-rs37-final-for-revision.pdb |
| 12848 | | --- |
| 12849 | | warnings | Ignored bad PDB record found on line 193 |
| 12850 | | |
| 12851 | | |
| 12852 | | Ignored bad PDB record found on line 194 |
| 12853 | | |
| 12854 | | |
| 12855 | | Ignored bad PDB record found on line 195 |
| 12856 | | ALLOWED : 4.25 % |
| 12857 | | |
| 12858 | | Ignored bad PDB record found on line 196 |
| 12859 | | CIS-PROLINE : 16.6666666667 |
| 12860 | | |
| 12861 | | Ignored bad PDB record found on line 197 |
| 12862 | | CIS-GENERAL : 0.0 |
| 12863 | | |
| 12864 | | 18 messages similar to the above omitted |
| 12865 | | |
| 12866 | | Chain information for Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb #27 |
| 12867 | | --- |
| 12868 | | Chain | Description |
| 12869 | | A B C D E F G H I J K L | No description available |
| 12870 | | |
| 12871 | | |
| 12872 | | > color #27 #aaaaffff |
| 12873 | | |
| 12874 | | > hide #!26-27 atoms |
| 12875 | | |
| 12876 | | > show #!26-27 cartoons |
| 12877 | | |
| 12878 | | > select add #27 |
| 12879 | | |
| 12880 | | 48276 atoms, 48744 bonds, 12 pseudobonds, 2568 residues, 2 models selected |
| 12881 | | |
| 12882 | | > view matrix models #27,1,0,0,-38.184,0,1,0,-15.794,0,0,1,-84.832 |
| 12883 | | |
| 12884 | | > view matrix models #27,1,0,0,-30.731,0,1,0,-34.825,0,0,1,-87.356 |
| 12885 | | |
| 12886 | | > select #27/g-n |
| 12887 | | |
| 12888 | | 24138 atoms, 24372 bonds, 6 pseudobonds, 1284 residues, 2 models selected |
| 12889 | | |
| 12890 | | > delete sel |
| 12891 | | |
| 12892 | | > select add #27 |
| 12893 | | |
| 12894 | | 24138 atoms, 24372 bonds, 6 pseudobonds, 1284 residues, 2 models selected |
| 12895 | | |
| 12896 | | > ui mousemode right "rotate selected models" |
| 12897 | | |
| 12898 | | > view matrix models |
| 12899 | | > #27,0.29316,0.94254,-0.16026,-48.228,0.94996,-0.30607,-0.06234,21.823,-0.10781,-0.13397,-0.9851,143.88 |
| 12900 | | |
| 12901 | | > ui mousemode right "translate selected models" |
| 12902 | | |
| 12903 | | > view matrix models |
| 12904 | | > #27,0.29316,0.94254,-0.16026,-55.707,0.94996,-0.30607,-0.06234,31.65,-0.10781,-0.13397,-0.9851,229.94 |
| 12905 | | |
| 12906 | | > view matrix models |
| 12907 | | > #27,0.29316,0.94254,-0.16026,-45.989,0.94996,-0.30607,-0.06234,25.77,-0.10781,-0.13397,-0.9851,226.77 |
| 12908 | | |
| 12909 | | > view matrix models |
| 12910 | | > #27,0.29316,0.94254,-0.16026,-51.794,0.94996,-0.30607,-0.06234,25.724,-0.10781,-0.13397,-0.9851,236.57 |
| 12911 | | |
| 12912 | | > ui mousemode right "rotate selected models" |
| 12913 | | |
| 12914 | | > view matrix models |
| 12915 | | > #27,0.40113,0.91577,-0.021501,-77.074,0.91052,-0.40118,-0.10002,48.536,-0.10022,0.020543,-0.99475,214.55 |
| 12916 | | |
| 12917 | | > view matrix models |
| 12918 | | > #27,0.55984,0.76443,-0.31972,-48.531,0.76805,-0.62354,-0.14595,104.81,-0.31092,-0.16385,-0.9362,264.75 |
| 12919 | | |
| 12920 | | > view matrix models |
| 12921 | | > #27,0.87698,0.47984,0.025595,-87.413,0.47923,-0.86947,-0.11981,178.02,-0.035237,0.11734,-0.99247,191.39 |
| 12922 | | |
| 12923 | | > view matrix models |
| 12924 | | > #27,0.82866,0.54418,0.13114,-100.15,0.55599,-0.82731,-0.080246,157.23,0.064824,0.13941,-0.98811,173.65 |
| 12925 | | |
| 12926 | | > view matrix models |
| 12927 | | > #27,0.82734,0.54116,0.15052,-101.46,0.5597,-0.81685,-0.13962,161.12,0.047391,0.19976,-0.9787,166.63 |
| 12928 | | |
| 12929 | | > ui mousemode right "translate selected models" |
| 12930 | | |
| 12931 | | > view matrix models |
| 12932 | | > #27,0.82734,0.54116,0.15052,-98.873,0.5597,-0.81685,-0.13962,159.42,0.047391,0.19976,-0.9787,163.86 |
| 12933 | | |
| 12934 | | > ui mousemode right "rotate selected models" |
| 12935 | | |
| 12936 | | > view matrix models |
| 12937 | | > #27,0.70793,0.68188,0.18403,-105.22,0.70438,-0.70075,-0.11314,119.82,0.051814,0.20972,-0.97639,161.59 |
| 12938 | | |
| 12939 | | > ui mousemode right "translate selected models" |
| 12940 | | |
| 12941 | | > view matrix models |
| 12942 | | > #27,0.70793,0.68188,0.18403,-102.67,0.70438,-0.70075,-0.11314,117.25,0.051814,0.20972,-0.97639,161.53 |
| 12943 | | |
| 12944 | | > fitmap #27 inMap #3 |
| 12945 | | |
| 12946 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 12947 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 24138 atoms |
| 12948 | | average map value = 0.1152, steps = 108 |
| 12949 | | shifted from previous position = 4.75 |
| 12950 | | rotated from previous position = 12.9 degrees |
| 12951 | | atoms outside contour = 18957, contour level = 0.18046 |
| 12952 | | |
| 12953 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 12954 | | to N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 12955 | | Matrix rotation and translation |
| 12956 | | 0.53799775 0.84294625 0.00024963 -29.76097737 |
| 12957 | | 0.84294627 -0.53799776 -0.00001904 122.75614070 |
| 12958 | | 0.00011825 0.00022067 -0.99999997 265.31002431 |
| 12959 | | Axis 0.87692439 0.48062834 0.00009903 |
| 12960 | | Axis point 0.00000000 69.52349257 132.66085903 |
| 12961 | | Rotation angle (degrees) 179.99216915 |
| 12962 | | Shift along axis 32.92822703 |
| 12963 | | |
| 12964 | | |
| 12965 | | > select clear |
| 12966 | | |
| 12967 | | > show #!20 models |
| 12968 | | |
| 12969 | | > select |
| 12970 | | |
| 12971 | | 127504 atoms, 130360 bonds, 66 pseudobonds, 13038 residues, 58 models selected |
| 12972 | | |
| 12973 | | > hide sel atoms |
| 12974 | | |
| 12975 | | > select clear |
| 12976 | | |
| 12977 | | > select #20,18,27 |
| 12978 | | |
| 12979 | | 47322 atoms, 48090 bonds, 18 pseudobonds, 3756 residues, 6 models selected |
| 12980 | | |
| 12981 | | > select #20,18,27/b,c,e,f |
| 12982 | | |
| 12983 | | 31548 atoms, 32060 bonds, 12 pseudobonds, 2504 residues, 6 models selected |
| 12984 | | |
| 12985 | | > hide sel ribbons |
| 12986 | | |
| 12987 | | > select add #20 |
| 12988 | | |
| 12989 | | 35476 atoms, 36082 bonds, 14 pseudobonds, 2916 residues, 14 models selected |
| 12990 | | |
| 12991 | | > select subtract #20 |
| 12992 | | |
| 12993 | | 23692 atoms, 24016 bonds, 8 pseudobonds, 1680 residues, 14 models selected |
| 12994 | | |
| 12995 | | > select add #20 |
| 12996 | | |
| 12997 | | 35476 atoms, 36082 bonds, 14 pseudobonds, 2916 residues, 10 models selected |
| 12998 | | |
| 12999 | | > ui mousemode right "rotate selected models" |
| 13000 | | |
| 13001 | | > select add #18 |
| 13002 | | |
| 13003 | | 39276 atoms, 39966 bonds, 16 pseudobonds, 3328 residues, 16 models selected |
| 13004 | | |
| 13005 | | > select subtract #18 |
| 13006 | | |
| 13007 | | 27876 atoms, 28314 bonds, 10 pseudobonds, 2092 residues, 16 models selected |
| 13008 | | |
| 13009 | | > select add #18 |
| 13010 | | |
| 13011 | | 39276 atoms, 39966 bonds, 16 pseudobonds, 3328 residues, 12 models selected |
| 13012 | | |
| 13013 | | > select subtract #18 |
| 13014 | | |
| 13015 | | 27876 atoms, 28314 bonds, 10 pseudobonds, 2092 residues, 16 models selected |
| 13016 | | |
| 13017 | | > select subtract #20 |
| 13018 | | |
| 13019 | | 16092 atoms, 16248 bonds, 4 pseudobonds, 856 residues, 8 models selected |
| 13020 | | |
| 13021 | | > select add #20 |
| 13022 | | |
| 13023 | | 27876 atoms, 28314 bonds, 10 pseudobonds, 2092 residues, 4 models selected |
| 13024 | | |
| 13025 | | > select subtract #20 |
| 13026 | | |
| 13027 | | 16092 atoms, 16248 bonds, 4 pseudobonds, 856 residues, 8 models selected |
| 13028 | | |
| 13029 | | > select #20,18,27/b,c,e,f |
| 13030 | | |
| 13031 | | 31548 atoms, 32060 bonds, 12 pseudobonds, 2504 residues, 6 models selected |
| 13032 | | |
| 13033 | | > hide #!26 models |
| 13034 | | |
| 13035 | | > select add #27 |
| 13036 | | |
| 13037 | | 39594 atoms, 40184 bonds, 14 pseudobonds, 2932 residues, 14 models selected |
| 13038 | | |
| 13039 | | > select subtract #27 |
| 13040 | | |
| 13041 | | 15456 atoms, 15812 bonds, 8 pseudobonds, 1648 residues, 12 models selected |
| 13042 | | |
| 13043 | | > select add #27 |
| 13044 | | |
| 13045 | | 39594 atoms, 40184 bonds, 14 pseudobonds, 2932 residues, 14 models selected |
| 13046 | | |
| 13047 | | > view matrix models |
| 13048 | | > #18,0.98017,0.14589,0.13408,-100.71,-0.14135,0.98903,-0.042817,-25.064,-0.13885,0.023016,0.99005,-43.062,#20,0.99075,-0.01978,0.13425,-10.62,0.025726,0.99876,-0.042703,1.7119,-0.13324,0.045762,0.99003,10.465,#27,0.64943,0.74854,-0.13391,-76.374,0.75842,-0.65037,0.042665,88.972,-0.055155,-0.12927,-0.99007,226.57 |
| 13049 | | |
| 13050 | | > ui mousemode right "rotate selected models" |
| 13051 | | |
| 13052 | | > select add #20 |
| 13053 | | |
| 13054 | | 43522 atoms, 44206 bonds, 16 pseudobonds, 3344 residues, 14 models selected |
| 13055 | | |
| 13056 | | > select subtract #20 |
| 13057 | | |
| 13058 | | 31738 atoms, 32140 bonds, 10 pseudobonds, 2108 residues, 14 models selected |
| 13059 | | |
| 13060 | | > select subtract #27 |
| 13061 | | |
| 13062 | | 7600 atoms, 7768 bonds, 4 pseudobonds, 824 residues, 6 models selected |
| 13063 | | |
| 13064 | | > select add #27 |
| 13065 | | |
| 13066 | | 31738 atoms, 32140 bonds, 10 pseudobonds, 2108 residues, 8 models selected |
| 13067 | | |
| 13068 | | > view matrix models |
| 13069 | | > #18,0.55806,0.74737,0.36056,-168.15,-0.82938,0.48854,0.27102,120.1,0.026406,-0.45029,0.89249,24.305,#27,0.93015,0.069493,-0.36055,2.527,-0.033273,-0.96194,-0.27124,276.51,-0.36567,0.26429,-0.89243,205.15 |
| 13070 | | |
| 13071 | | > view matrix models |
| 13072 | | > #18,0.39533,0.90526,0.15562,-133.31,-0.91574,0.40165,-0.010091,195.56,-0.071641,-0.13852,0.98776,-27.017,#27,0.97595,-0.15261,-0.15566,7.1698,-0.15295,-0.98818,0.0098661,269.3,-0.15533,0.014179,-0.98776,220.22 |
| 13073 | | |
| 13074 | | > fitmap #27 inMap #3 |
| 13075 | | |
| 13076 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 13077 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 24138 atoms |
| 13078 | | average map value = 0.1152, steps = 104 |
| 13079 | | shifted from previous position = 0.256 |
| 13080 | | rotated from previous position = 9.56 degrees |
| 13081 | | atoms outside contour = 18945, contour level = 0.18046 |
| 13082 | | |
| 13083 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 13084 | | to N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13085 | | Matrix rotation and translation |
| 13086 | | 0.99900649 -0.04456506 0.00008172 30.69516423 |
| 13087 | | -0.04456504 -0.99900646 -0.00024822 313.93619642 |
| 13088 | | 0.00009270 0.00024433 -0.99999997 265.30492652 |
| 13089 | | Axis 0.99975163 -0.02228646 0.00004452 |
| 13090 | | Axis point 0.00000000 157.29388403 132.67115042 |
| 13091 | | Rotation angle (degrees) 179.98588611 |
| 13092 | | Shift along axis 23.70282638 |
| 13093 | | |
| 13094 | | |
| 13095 | | > view matrix models |
| 13096 | | > #18,0.42934,0.88656,0.17226,-138.61,-0.89874,0.43821,-0.015303,187.53,-0.089051,-0.14824,0.98493,-22.041,#27,0.98495,-0.17206,-0.016494,-5.0575,-0.17189,-0.98505,0.011214,271.4,-0.018177,-0.0082097,-0.9998,205.15 |
| 13097 | | |
| 13098 | | > ui mousemode right "translate selected models" |
| 13099 | | |
| 13100 | | > view matrix models |
| 13101 | | > #18,0.42934,0.88656,0.17226,-138.34,-0.89874,0.43821,-0.015303,188.01,-0.089051,-0.14824,0.98493,-18.388,#27,0.98495,-0.17206,-0.016494,-4.7865,-0.17189,-0.98505,0.011214,271.88,-0.018177,-0.0082097,-0.9998,208.81 |
| 13102 | | |
| 13103 | | > fitmap #27 inMap #3 |
| 13104 | | |
| 13105 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 13106 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 24138 atoms |
| 13107 | | average map value = 0.1152, steps = 64 |
| 13108 | | shifted from previous position = 3.69 |
| 13109 | | rotated from previous position = 2.5 degrees |
| 13110 | | atoms outside contour = 18948, contour level = 0.18046 |
| 13111 | | |
| 13112 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 13113 | | to N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13114 | | Matrix rotation and translation |
| 13115 | | 0.99901091 -0.04446596 -0.00001510 30.70041734 |
| 13116 | | -0.04446596 -0.99901087 -0.00025656 313.92295641 |
| 13117 | | -0.00000368 0.00025698 -0.99999997 265.31893759 |
| 13118 | | Axis 0.99975273 -0.02223694 -0.00000383 |
| 13119 | | Axis point 0.00000000 157.28586431 132.67972293 |
| 13120 | | Rotation angle (degrees) 179.98528450 |
| 13121 | | Shift along axis 23.71112558 |
| 13122 | | |
| 13123 | | |
| 13124 | | > view matrix models |
| 13125 | | > #18,0.42934,0.88656,0.17226,-143.22,-0.89874,0.43821,-0.015303,186.99,-0.089051,-0.14824,0.98493,-20.607,#27,0.97768,-0.2101,-1.7211e-05,-5.1351,-0.2101,-0.97768,-0.00021188,275.89,2.769e-05,0.00021077,-1,199.18 |
| 13126 | | |
| 13127 | | > ui mousemode right "rotate selected models" |
| 13128 | | |
| 13129 | | > view matrix models |
| 13130 | | > #18,0.43545,0.86682,0.24291,-152.44,-0.89455,0.44689,0.0088969,180.91,-0.10084,-0.22117,0.97001,-4.0935,#27,0.97823,-0.19463,-0.071987,-0.26359,-0.19667,-0.98021,-0.022387,276.55,-0.066206,0.036057,-0.99715,203.21 |
| 13131 | | |
| 13132 | | > ui mousemode right "translate selected models" |
| 13133 | | |
| 13134 | | > view matrix models |
| 13135 | | > #18,0.43545,0.86682,0.24291,-146.78,-0.89455,0.44689,0.0088969,182.07,-0.10084,-0.22117,0.97001,-1.3774,#27,0.97823,-0.19463,-0.071987,5.3896,-0.19667,-0.98021,-0.022387,277.7,-0.066206,0.036057,-0.99715,205.93 |
| 13136 | | |
| 13137 | | > fitmap #27 inMap #3 |
| 13138 | | |
| 13139 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 13140 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 24138 atoms |
| 13141 | | average map value = 0.1152, steps = 64 |
| 13142 | | shifted from previous position = 0.877 |
| 13143 | | rotated from previous position = 4.4 degrees |
| 13144 | | atoms outside contour = 18961, contour level = 0.18046 |
| 13145 | | |
| 13146 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 13147 | | to N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13148 | | Matrix rotation and translation |
| 13149 | | 0.99901339 -0.04441019 0.00004124 30.67584011 |
| 13150 | | -0.04441018 -0.99901335 -0.00026996 313.91851147 |
| 13151 | | 0.00005318 0.00026787 -0.99999997 265.32198490 |
| 13152 | | Axis 0.99975335 -0.02220910 0.00002444 |
| 13153 | | Axis point 0.00000000 157.28213507 132.68176775 |
| 13154 | | Rotation angle (degrees) 179.98458849 |
| 13155 | | Shift along axis 23.70291089 |
| 13156 | | |
| 13157 | | |
| 13158 | | > select add #18 |
| 13159 | | |
| 13160 | | 35538 atoms, 36024 bonds, 12 pseudobonds, 2520 residues, 8 models selected |
| 13161 | | |
| 13162 | | > show #!18 models |
| 13163 | | |
| 13164 | | > hide #!18 models |
| 13165 | | |
| 13166 | | > select subtract #18 |
| 13167 | | |
| 13168 | | 24138 atoms, 24372 bonds, 6 pseudobonds, 1284 residues, 8 models selected |
| 13169 | | |
| 13170 | | > show #!18 models |
| 13171 | | |
| 13172 | | > select #18-30 |
| 13173 | | |
| 13174 | | 106330 atoms, 108712 bonds, 54 pseudobonds, 10584 residues, 22 models selected |
| 13175 | | |
| 13176 | | > show sel ribbons |
| 13177 | | |
| 13178 | | > select clear |
| 13179 | | |
| 13180 | | > show #!3 models |
| 13181 | | |
| 13182 | | > hide #!27 models |
| 13183 | | |
| 13184 | | > hide #!20 models |
| 13185 | | |
| 13186 | | > hide #!18 models |
| 13187 | | |
| 13188 | | > show #!18 models |
| 13189 | | |
| 13190 | | > select add #18 |
| 13191 | | |
| 13192 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 13193 | | |
| 13194 | | > view matrix models |
| 13195 | | > #18,0.43545,0.86682,0.24291,-144.01,-0.89455,0.44689,0.0088969,179.42,-0.10084,-0.22117,0.97001,-4.1112 |
| 13196 | | |
| 13197 | | > fitmap #18 inMap #3 |
| 13198 | | |
| 13199 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13200 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13201 | | average map value = 0.166, steps = 116 |
| 13202 | | shifted from previous position = 4.03 |
| 13203 | | rotated from previous position = 15.4 degrees |
| 13204 | | atoms outside contour = 7012, contour level = 0.18046 |
| 13205 | | |
| 13206 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13207 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13208 | | Matrix rotation and translation |
| 13209 | | 0.49900007 0.86660194 -0.00004538 -60.68494796 |
| 13210 | | -0.86660194 0.49900007 -0.00008250 227.04136658 |
| 13211 | | -0.00004885 0.00008049 1.00000000 -0.01100686 |
| 13212 | | Axis 0.00009404 0.00000200 -1.00000000 |
| 13213 | | Axis point 166.01932001 166.00541576 0.00000000 |
| 13214 | | Rotation angle (degrees) 60.06613282 |
| 13215 | | Shift along axis 0.00575510 |
| 13216 | | |
| 13217 | | |
| 13218 | | > select clear |
| 13219 | | |
| 13220 | | > hide #!18 models |
| 13221 | | |
| 13222 | | > show #!18 models |
| 13223 | | |
| 13224 | | > hide #!3 models |
| 13225 | | |
| 13226 | | > show #!20 models |
| 13227 | | |
| 13228 | | > show #!7 models |
| 13229 | | |
| 13230 | | > fitmap #20 inMap #7 |
| 13231 | | |
| 13232 | | Fit molecule 230926_MBCD_HC_10.pdb (#20) to map |
| 13233 | | MBCD_P41_J50_013_volume_map.mrc (#7) using 11784 atoms |
| 13234 | | average map value = 0.1298, steps = 84 |
| 13235 | | shifted from previous position = 0.231 |
| 13236 | | rotated from previous position = 8.21 degrees |
| 13237 | | atoms outside contour = 5793, contour level = 0.11674 |
| 13238 | | |
| 13239 | | Position of 230926_MBCD_HC_10.pdb (#20) relative to |
| 13240 | | MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 13241 | | Matrix rotation and translation |
| 13242 | | 0.99999997 0.00021565 -0.00007063 -0.01562552 |
| 13243 | | -0.00021566 0.99999996 -0.00019277 0.04475525 |
| 13244 | | 0.00007058 0.00019279 0.99999998 -0.03065823 |
| 13245 | | Axis 0.64744849 -0.23712894 -0.72427917 |
| 13246 | | Axis point 209.13353167 76.91398535 0.00000000 |
| 13247 | | Rotation angle (degrees) 0.01705982 |
| 13248 | | Shift along axis 0.00147563 |
| 13249 | | |
| 13250 | | |
| 13251 | | > hide #!7 models |
| 13252 | | |
| 13253 | | > hide #!20 models |
| 13254 | | |
| 13255 | | > hide #!18 models |
| 13256 | | |
| 13257 | | > show #!20 models |
| 13258 | | |
| 13259 | | > show #!27 models |
| 13260 | | |
| 13261 | | > select clear |
| 13262 | | |
| 13263 | | > show #!18 models |
| 13264 | | |
| 13265 | | > select #18,20,27 |
| 13266 | | |
| 13267 | | 47322 atoms, 48090 bonds, 18 pseudobonds, 3756 residues, 6 models selected |
| 13268 | | |
| 13269 | | > select #18,20,27/b |
| 13270 | | |
| 13271 | | 7887 atoms, 8015 bonds, 3 pseudobonds, 626 residues, 6 models selected |
| 13272 | | |
| 13273 | | > select #18,20,27/a |
| 13274 | | |
| 13275 | | 7887 atoms, 8015 bonds, 3 pseudobonds, 626 residues, 6 models selected |
| 13276 | | |
| 13277 | | > select #18,20,27/b-f |
| 13278 | | |
| 13279 | | 39435 atoms, 40075 bonds, 15 pseudobonds, 3130 residues, 6 models selected |
| 13280 | | |
| 13281 | | > hide sel ribbons |
| 13282 | | |
| 13283 | | > select add #20 |
| 13284 | | |
| 13285 | | 41399 atoms, 42086 bonds, 16 pseudobonds, 3336 residues, 16 models selected |
| 13286 | | |
| 13287 | | > select subtract #20 |
| 13288 | | |
| 13289 | | 29615 atoms, 30020 bonds, 10 pseudobonds, 2100 residues, 15 models selected |
| 13290 | | |
| 13291 | | > select add #18 |
| 13292 | | |
| 13293 | | 31515 atoms, 31962 bonds, 11 pseudobonds, 2306 residues, 9 models selected |
| 13294 | | |
| 13295 | | > select subtract #18 |
| 13296 | | |
| 13297 | | 20115 atoms, 20310 bonds, 5 pseudobonds, 1070 residues, 8 models selected |
| 13298 | | |
| 13299 | | > select add #18 |
| 13300 | | |
| 13301 | | 31515 atoms, 31962 bonds, 11 pseudobonds, 2306 residues, 4 models selected |
| 13302 | | |
| 13303 | | > ui mousemode right "rotate selected models" |
| 13304 | | |
| 13305 | | > view matrix models |
| 13306 | | > #18,0.3232,0.94598,0.025928,-106.87,-0.94591,0.32375,-0.021132,215.14,-0.028385,-0.017696,0.99944,-56.712,#27,0.97157,-0.23533,-0.026,6.3311,-0.23483,-0.97181,0.020787,277.31,-0.030159,-0.01409,-0.99945,207.14 |
| 13307 | | |
| 13308 | | > fitmap #27 inMap #7 |
| 13309 | | |
| 13310 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 13311 | | MBCD_P41_J50_013_volume_map.mrc (#7) using 24138 atoms |
| 13312 | | average map value = 0.09324, steps = 72 |
| 13313 | | shifted from previous position = 0.769 |
| 13314 | | rotated from previous position = 2.36 degrees |
| 13315 | | atoms outside contour = 16407, contour level = 0.11674 |
| 13316 | | |
| 13317 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 13318 | | to MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 13319 | | Matrix rotation and translation |
| 13320 | | 0.97738895 -0.21144938 0.00007412 -0.04081000 |
| 13321 | | -0.21144935 -0.97738891 -0.00033092 277.08117276 |
| 13322 | | 0.00014242 0.00030776 -0.99999995 201.47105643 |
| 13323 | | Axis 0.99433106 -0.10632850 0.00005322 |
| 13324 | | Axis point 0.00000000 138.52213579 100.75764995 |
| 13325 | | Rotation angle (degrees) 179.98159875 |
| 13326 | | Shift along axis -29.49148207 |
| 13327 | | |
| 13328 | | |
| 13329 | | > fitmap #27 inMap #7 |
| 13330 | | |
| 13331 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 13332 | | MBCD_P41_J50_013_volume_map.mrc (#7) using 24138 atoms |
| 13333 | | average map value = 0.09324, steps = 40 |
| 13334 | | shifted from previous position = 0.00292 |
| 13335 | | rotated from previous position = 0.0199 degrees |
| 13336 | | atoms outside contour = 16401, contour level = 0.11674 |
| 13337 | | |
| 13338 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 13339 | | to MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 13340 | | Matrix rotation and translation |
| 13341 | | 0.97746003 -0.21112057 -0.00000429 -0.09081784 |
| 13342 | | -0.21112055 -0.97745997 -0.00037320 277.05106037 |
| 13343 | | 0.00007460 0.00036570 -0.99999993 201.47399420 |
| 13344 | | Axis 0.99434894 -0.10616111 0.00001662 |
| 13345 | | Axis point 0.00000000 138.50186135 100.76258610 |
| 13346 | | Rotation angle (degrees) 179.97871180 |
| 13347 | | Shift along axis -29.49900450 |
| 13348 | | |
| 13349 | | |
| 13350 | | > fitmap #27 inMap #7 |
| 13351 | | |
| 13352 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 13353 | | MBCD_P41_J50_013_volume_map.mrc (#7) using 24138 atoms |
| 13354 | | average map value = 0.09324, steps = 28 |
| 13355 | | shifted from previous position = 0.00625 |
| 13356 | | rotated from previous position = 0.00545 degrees |
| 13357 | | atoms outside contour = 16401, contour level = 0.11674 |
| 13358 | | |
| 13359 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 13360 | | to MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 13361 | | Matrix rotation and translation |
| 13362 | | 0.97745198 -0.21115783 0.00006353 -0.09183431 |
| 13363 | | -0.21115780 -0.97745194 -0.00031840 277.04913807 |
| 13364 | | 0.00012933 0.00029780 -0.99999995 201.46967316 |
| 13365 | | Axis 0.99434690 -0.10618024 0.00004722 |
| 13366 | | Axis point 0.00000000 138.50397053 100.75617783 |
| 13367 | | Rotation angle (degrees) 179.98224678 |
| 13368 | | Shift along axis -29.49894571 |
| 13369 | | |
| 13370 | | |
| 13371 | | > fitmap #27 inMap #7 |
| 13372 | | |
| 13373 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 13374 | | MBCD_P41_J50_013_volume_map.mrc (#7) using 24138 atoms |
| 13375 | | average map value = 0.09324, steps = 28 |
| 13376 | | shifted from previous position = 0.0224 |
| 13377 | | rotated from previous position = 0.000781 degrees |
| 13378 | | atoms outside contour = 16415, contour level = 0.11674 |
| 13379 | | |
| 13380 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 13381 | | to MBCD_P41_J50_013_volume_map.mrc (#7) coordinates: |
| 13382 | | Matrix rotation and translation |
| 13383 | | 0.97745096 -0.21116256 0.00006167 -0.08869672 |
| 13384 | | -0.21116253 -0.97745091 -0.00033100 277.05256975 |
| 13385 | | 0.00013017 0.00031051 -0.99999995 201.49000011 |
| 13386 | | Axis 0.99434665 -0.10618260 0.00004701 |
| 13387 | | Axis point 0.00000000 138.50520754 100.76721790 |
| 13388 | | Rotation angle (degrees) 179.98151767 |
| 13389 | | Shift along axis -29.49688549 |
| 13390 | | |
| 13391 | | |
| 13392 | | > fitmap #18 inMap #3 |
| 13393 | | |
| 13394 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13395 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13396 | | average map value = 0.166, steps = 60 |
| 13397 | | shifted from previous position = 0.741 |
| 13398 | | rotated from previous position = 2.41 degrees |
| 13399 | | atoms outside contour = 7015, contour level = 0.18046 |
| 13400 | | |
| 13401 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13402 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13403 | | Matrix rotation and translation |
| 13404 | | 0.49898756 0.86660915 0.00010479 -60.69842360 |
| 13405 | | -0.86660912 0.49898757 -0.00020368 227.04693194 |
| 13406 | | -0.00022880 0.00001082 0.99999998 0.02958979 |
| 13407 | | Axis 0.00012376 0.00019247 -0.99999997 |
| 13408 | | Axis point 166.01412712 166.01898214 0.00000000 |
| 13409 | | Rotation angle (degrees) 60.06696066 |
| 13410 | | Shift along axis 0.00659721 |
| 13411 | | |
| 13412 | | |
| 13413 | | > select add #27 |
| 13414 | | |
| 13415 | | 35538 atoms, 36024 bonds, 12 pseudobonds, 2520 residues, 10 models selected |
| 13416 | | |
| 13417 | | > select subtract #27 |
| 13418 | | |
| 13419 | | 11400 atoms, 11652 bonds, 6 pseudobonds, 1236 residues, 8 models selected |
| 13420 | | |
| 13421 | | > view matrix models |
| 13422 | | > #18,0.46068,0.88268,0.093064,-128.01,-0.88754,0.45897,0.040206,175.24,-0.0072253,-0.10112,0.99485,-46.293 |
| 13423 | | |
| 13424 | | > view matrix models |
| 13425 | | > #18,0.92146,0.29989,0.24693,-129.57,-0.25001,0.94432,-0.2139,49.125,-0.29733,0.13537,0.94513,-32.792 |
| 13426 | | |
| 13427 | | > ui mousemode right "translate selected models" |
| 13428 | | |
| 13429 | | > view matrix models |
| 13430 | | > #18,0.92146,0.29989,0.24693,-124.16,-0.25001,0.94432,-0.2139,38.972,-0.29733,0.13537,0.94513,-38.297 |
| 13431 | | |
| 13432 | | > ui mousemode right "translate selected models" |
| 13433 | | |
| 13434 | | > view matrix models |
| 13435 | | > #18,0.92146,0.29989,0.24693,-120.71,-0.25001,0.94432,-0.2139,35.72,-0.29733,0.13537,0.94513,-37.004 |
| 13436 | | |
| 13437 | | > ui mousemode right "rotate selected models" |
| 13438 | | |
| 13439 | | > view matrix models |
| 13440 | | > #18,0.98081,0.17494,0.086011,-83.362,-0.17665,0.98419,0.012558,-18.454,-0.082454,-0.027511,0.99622,-51.264 |
| 13441 | | |
| 13442 | | > fitmap #18 inMap #3 |
| 13443 | | |
| 13444 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13445 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13446 | | average map value = 0.06518, steps = 116 |
| 13447 | | shifted from previous position = 7.86 |
| 13448 | | rotated from previous position = 3.23 degrees |
| 13449 | | atoms outside contour = 10302, contour level = 0.18046 |
| 13450 | | |
| 13451 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13452 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13453 | | Matrix rotation and translation |
| 13454 | | 0.99027672 0.01461111 0.13834211 -15.61961396 |
| 13455 | | -0.01889220 0.99938081 0.02968319 6.55327789 |
| 13456 | | -0.13782275 -0.03200816 0.98993958 29.21169812 |
| 13457 | | Axis -0.21650044 0.96917657 -0.11757696 |
| 13458 | | Axis point 208.73133255 0.00000000 117.71961422 |
| 13459 | | Rotation angle (degrees) 8.19102944 |
| 13460 | | Shift along axis 6.29831400 |
| 13461 | | |
| 13462 | | |
| 13463 | | > fitmap #18 inMap #3 |
| 13464 | | |
| 13465 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13466 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13467 | | average map value = 0.06518, steps = 44 |
| 13468 | | shifted from previous position = 0.00738 |
| 13469 | | rotated from previous position = 0.00541 degrees |
| 13470 | | atoms outside contour = 10301, contour level = 0.18046 |
| 13471 | | |
| 13472 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13473 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13474 | | Matrix rotation and translation |
| 13475 | | 0.99027435 0.01464938 0.13835497 -15.62603126 |
| 13476 | | -0.01894225 0.99937751 0.02976232 6.54991886 |
| 13477 | | -0.13783285 -0.03209362 0.98993540 29.22107744 |
| 13478 | | Axis -0.21702600 0.96902479 -0.11785865 |
| 13479 | | Axis point 208.78814122 0.00000000 117.74493355 |
| 13480 | | Rotation angle (degrees) 8.19300689 |
| 13481 | | Shift along axis 6.29433210 |
| 13482 | | |
| 13483 | | |
| 13484 | | > view matrix models |
| 13485 | | > #18,0.87475,0.4503,0.17902,-130.92,-0.47248,0.87462,0.10867,23.459,-0.10764,-0.17964,0.97783,-14.13 |
| 13486 | | |
| 13487 | | > view matrix models |
| 13488 | | > #18,0.98354,0.0067218,0.18056,-77.959,-0.071079,0.93313,0.35245,-84.066,-0.16611,-0.35948,0.91825,32.15 |
| 13489 | | |
| 13490 | | > view matrix models |
| 13491 | | > #18,0.37408,-0.87094,0.31863,124.24,0.49079,0.47744,0.72882,-156.74,-0.78688,-0.11626,0.60605,135.85 |
| 13492 | | |
| 13493 | | > view matrix models |
| 13494 | | > #18,0.77562,-0.24762,0.58061,-74.165,0.23646,0.96684,0.096453,-91.738,-0.58524,0.062481,0.80845,45.421 |
| 13495 | | |
| 13496 | | > view matrix models |
| 13497 | | > #18,0.39114,-0.91167,0.12599,159.85,0.67272,0.18979,-0.71514,99.609,0.62805,0.36448,0.68753,-157.67 |
| 13498 | | |
| 13499 | | > view matrix models |
| 13500 | | > #18,0.93213,-0.28393,0.22477,-32.574,0.17004,-0.20485,-0.96391,274.94,0.31973,0.93671,-0.14267,-65.11 |
| 13501 | | |
| 13502 | | > view matrix models |
| 13503 | | > #18,0.45081,0.83032,0.32763,-153.02,-0.89147,0.43743,0.11806,150.71,-0.04529,-0.34529,0.9374,9.2544 |
| 13504 | | |
| 13505 | | > view matrix models |
| 13506 | | > #18,0.067468,0.9917,-0.10948,-50.455,-0.98658,0.049956,-0.15547,269.87,-0.14871,0.1185,0.98176,-55.198 |
| 13507 | | |
| 13508 | | > view matrix models |
| 13509 | | > #18,0.1434,0.9854,-0.091772,-63.413,-0.98409,0.13215,-0.11879,250.68,-0.10493,0.10735,0.98867,-60.955 |
| 13510 | | |
| 13511 | | > ui mousemode right "translate selected models" |
| 13512 | | |
| 13513 | | > view matrix models |
| 13514 | | > #18,0.1434,0.9854,-0.091772,-71.947,-0.98409,0.13215,-0.11879,249.67,-0.10493,0.10735,0.98867,-64.273 |
| 13515 | | |
| 13516 | | > fitmap #18 inMap #3 |
| 13517 | | |
| 13518 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13519 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13520 | | average map value = 0.06183, steps = 128 |
| 13521 | | shifted from previous position = 7.57 |
| 13522 | | rotated from previous position = 6.33 degrees |
| 13523 | | atoms outside contour = 10468, contour level = 0.18046 |
| 13524 | | |
| 13525 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13526 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13527 | | Matrix rotation and translation |
| 13528 | | 0.23669356 0.95891439 -0.15639475 -12.91849740 |
| 13529 | | -0.96869598 0.22050971 -0.11403305 295.38063165 |
| 13530 | | -0.07486137 0.17848986 0.98108976 -14.37878155 |
| 13531 | | Axis 0.14990536 -0.04178234 -0.98781710 |
| 13532 | | Axis point 179.26573138 156.15783373 0.00000000 |
| 13533 | | Rotation angle (degrees) 77.34109132 |
| 13534 | | Shift along axis -0.07463916 |
| 13535 | | |
| 13536 | | |
| 13537 | | > ui mousemode right "rotate selected models" |
| 13538 | | |
| 13539 | | > view matrix models |
| 13540 | | > #18,0.17963,0.92096,-0.34579,-23.963,-0.98303,0.15477,-0.098462,251.12,-0.037163,0.35761,0.93313,-103.73 |
| 13541 | | |
| 13542 | | > view matrix models |
| 13543 | | > #18,0.052928,0.85988,-0.50775,30.617,-0.91757,-0.15875,-0.3645,334.24,-0.39403,0.48519,0.7806,-46.65 |
| 13544 | | |
| 13545 | | > view matrix models |
| 13546 | | > #18,0.31441,0.73382,-0.60221,27.856,-0.92387,0.38234,-0.016453,193.62,0.21818,0.56154,0.79817,-150.25 |
| 13547 | | |
| 13548 | | > view matrix models |
| 13549 | | > #18,0.6711,0.6985,-0.24844,-76.714,-0.59217,0.70667,0.38723,28.502,0.44605,-0.11275,0.88788,-93.211 |
| 13550 | | |
| 13551 | | > view matrix models |
| 13552 | | > #18,0.76794,0.64052,0.0032238,-123.23,-0.57343,0.68525,0.44901,18.933,0.28539,-0.34666,0.89352,-34.444 |
| 13553 | | |
| 13554 | | > view matrix models |
| 13555 | | > #18,0.99827,-0.034034,0.047927,-59.083,0.042263,0.98224,-0.18279,-12.466,-0.040855,0.1845,0.98198,-84.313 |
| 13556 | | |
| 13557 | | > ui mousemode right "translate selected models" |
| 13558 | | |
| 13559 | | > view matrix models |
| 13560 | | > #18,0.99827,-0.034034,0.047927,-67.51,0.042263,0.98224,-0.18279,-17.224,-0.040855,0.1845,0.98198,-83.208 |
| 13561 | | |
| 13562 | | > view matrix models |
| 13563 | | > #18,0.99827,-0.034034,0.047927,-65.117,0.042263,0.98224,-0.18279,-24.891,-0.040855,0.1845,0.98198,-86.953 |
| 13564 | | |
| 13565 | | > ui mousemode right "rotate selected models" |
| 13566 | | |
| 13567 | | > view matrix models |
| 13568 | | > #18,0.97308,-0.17178,-0.15363,-6.8126,0.18318,0.98104,0.063301,-85.712,0.13984,-0.089739,0.9861,-71.19 |
| 13569 | | |
| 13570 | | > fitmap #18 inMap #3 |
| 13571 | | |
| 13572 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13573 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13574 | | average map value = 0.06771, steps = 100 |
| 13575 | | shifted from previous position = 5.3 |
| 13576 | | rotated from previous position = 9.22 degrees |
| 13577 | | atoms outside contour = 10137, contour level = 0.18046 |
| 13578 | | |
| 13579 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13580 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13581 | | Matrix rotation and translation |
| 13582 | | 0.96280912 -0.26344655 -0.05995400 56.00286217 |
| 13583 | | 0.26057269 0.96406949 -0.05169006 -22.19165970 |
| 13584 | | 0.07141739 0.03414529 0.99686189 -18.61055148 |
| 13585 | | Axis 0.15691671 -0.24016172 0.95796633 |
| 13586 | | Axis point 115.94540238 198.41996026 0.00000000 |
| 13587 | | Rotation angle (degrees) 15.87300668 |
| 13588 | | Shift along axis -3.71090990 |
| 13589 | | |
| 13590 | | |
| 13591 | | > fitmap #18 inMap #3 |
| 13592 | | |
| 13593 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13594 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13595 | | average map value = 0.06771, steps = 60 |
| 13596 | | shifted from previous position = 0.00507 |
| 13597 | | rotated from previous position = 0.00694 degrees |
| 13598 | | atoms outside contour = 10135, contour level = 0.18046 |
| 13599 | | |
| 13600 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13601 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13602 | | Matrix rotation and translation |
| 13603 | | 0.96282043 -0.26338544 -0.06004089 56.00239638 |
| 13604 | | 0.26051287 0.96408891 -0.05162936 -22.19053373 |
| 13605 | | 0.07148318 0.03406838 0.99685980 -18.60769559 |
| 13606 | | Axis 0.15669400 -0.24048514 0.95792165 |
| 13607 | | Axis point 115.96556600 198.46445446 0.00000000 |
| 13608 | | Rotation angle (degrees) 15.87000672 |
| 13609 | | Shift along axis -3.71298169 |
| 13610 | | |
| 13611 | | |
| 13612 | | > fitmap #18 inMap #3 |
| 13613 | | |
| 13614 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13615 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13616 | | average map value = 0.06771, steps = 76 |
| 13617 | | shifted from previous position = 0.0103 |
| 13618 | | rotated from previous position = 0.0116 degrees |
| 13619 | | atoms outside contour = 10135, contour level = 0.18046 |
| 13620 | | |
| 13621 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13622 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13623 | | Matrix rotation and translation |
| 13624 | | 0.96281647 -0.26343186 -0.05990055 55.99354026 |
| 13625 | | 0.26055410 0.96407023 -0.05176980 -22.17993574 |
| 13626 | | 0.07138615 0.03423749 0.99686096 -18.62102041 |
| 13627 | | Axis 0.15723828 -0.24001796 0.95794963 |
| 13628 | | Axis point 115.90376552 198.40878973 0.00000000 |
| 13629 | | Rotation angle (degrees) 15.87225605 |
| 13630 | | Shift along axis -3.71008851 |
| 13631 | | |
| 13632 | | |
| 13633 | | > show #!3 models |
| 13634 | | |
| 13635 | | > view matrix models |
| 13636 | | > #18,0.96675,-0.23848,0.092346,-32.207,0.24055,0.97056,-0.011828,-80.689,-0.086807,0.033649,0.99566,-59.297 |
| 13637 | | |
| 13638 | | > fitmap #18 inMap #3 |
| 13639 | | |
| 13640 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13641 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13642 | | average map value = 0.166, steps = 180 |
| 13643 | | shifted from previous position = 12 |
| 13644 | | rotated from previous position = 24.1 degrees |
| 13645 | | atoms outside contour = 7011, contour level = 0.18046 |
| 13646 | | |
| 13647 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13648 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13649 | | Matrix rotation and translation |
| 13650 | | 0.99999931 0.00116491 -0.00001064 -0.18360613 |
| 13651 | | -0.00116491 0.99999930 -0.00008849 0.20975451 |
| 13652 | | 0.00001053 0.00008850 0.99999998 -0.02241553 |
| 13653 | | Axis 0.07574667 -0.00905799 -0.99708595 |
| 13654 | | Axis point 180.01837363 158.14393864 0.00000000 |
| 13655 | | Rotation angle (degrees) 0.06693969 |
| 13656 | | Shift along axis 0.00654270 |
| 13657 | | |
| 13658 | | |
| 13659 | | > fitmap #18 inMap #3 |
| 13660 | | |
| 13661 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13662 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13663 | | average map value = 0.166, steps = 24 |
| 13664 | | shifted from previous position = 0.00496 |
| 13665 | | rotated from previous position = 0.00177 degrees |
| 13666 | | atoms outside contour = 7006, contour level = 0.18046 |
| 13667 | | |
| 13668 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13669 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13670 | | Matrix rotation and translation |
| 13671 | | 0.99999930 0.00116960 -0.00002147 -0.18213232 |
| 13672 | | -0.00116960 0.99999930 -0.00005994 0.20987990 |
| 13673 | | 0.00002140 0.00005996 0.99999998 -0.02238291 |
| 13674 | | Axis 0.05118001 -0.01829945 -0.99852178 |
| 13675 | | Axis point 179.49830139 156.22934560 0.00000000 |
| 13676 | | Rotation angle (degrees) 0.06711223 |
| 13677 | | Shift along axis 0.00918760 |
| 13678 | | |
| 13679 | | |
| 13680 | | > fitmap #18 inMap #3 |
| 13681 | | |
| 13682 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13683 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13684 | | average map value = 0.166, steps = 28 |
| 13685 | | shifted from previous position = 0.0202 |
| 13686 | | rotated from previous position = 0.00202 degrees |
| 13687 | | atoms outside contour = 7011, contour level = 0.18046 |
| 13688 | | |
| 13689 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13690 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13691 | | Matrix rotation and translation |
| 13692 | | 0.99999931 0.00116654 0.00000171 -0.19898984 |
| 13693 | | -0.00116654 0.99999930 -0.00008634 0.19873886 |
| 13694 | | -0.00000181 0.00008634 0.99999998 -0.02264338 |
| 13695 | | Axis 0.07381505 0.00150394 -0.99727081 |
| 13696 | | Axis point 170.25522301 171.19898456 0.00000000 |
| 13697 | | Rotation angle (degrees) 0.06702071 |
| 13698 | | Shift along axis 0.00819203 |
| 13699 | | |
| 13700 | | |
| 13701 | | > fitmap #18 inMap #3 |
| 13702 | | |
| 13703 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13704 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13705 | | average map value = 0.166, steps = 28 |
| 13706 | | shifted from previous position = 0.0182 |
| 13707 | | rotated from previous position = 0.000706 degrees |
| 13708 | | atoms outside contour = 7004, contour level = 0.18046 |
| 13709 | | |
| 13710 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13711 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13712 | | Matrix rotation and translation |
| 13713 | | 0.99999931 0.00116709 0.00000492 -0.18663747 |
| 13714 | | -0.00116709 0.99999930 -0.00009823 0.21314736 |
| 13715 | | -0.00000504 0.00009823 0.99999998 -0.02740001 |
| 13716 | | Axis 0.08387007 0.00425057 -0.99646763 |
| 13717 | | Axis point 182.49170589 160.92614808 0.00000000 |
| 13718 | | Rotation angle (degrees) 0.06710621 |
| 13719 | | Shift along axis 0.01255592 |
| 13720 | | |
| 13721 | | |
| 13722 | | > fitmap #18 inMap #3 |
| 13723 | | |
| 13724 | | Fit molecule 230904_Chol_HC_150.pdb (#18) to map |
| 13725 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) using 11400 atoms |
| 13726 | | average map value = 0.166, steps = 28 |
| 13727 | | shifted from previous position = 0.00515 |
| 13728 | | rotated from previous position = 0.00329 degrees |
| 13729 | | atoms outside contour = 7006, contour level = 0.18046 |
| 13730 | | |
| 13731 | | Position of 230904_Chol_HC_150.pdb (#18) relative to |
| 13732 | | N55H_CBX_P52_J575_011_volume_map.mrc (#3) coordinates: |
| 13733 | | Matrix rotation and translation |
| 13734 | | 0.99999930 0.00117384 0.00005665 -0.19556550 |
| 13735 | | -0.00117383 0.99999929 -0.00007429 0.20783145 |
| 13736 | | -0.00005674 0.00007423 0.99999998 -0.01926749 |
| 13737 | | Axis 0.06306348 0.04814536 -0.99684754 |
| 13738 | | Axis point 176.26253215 167.61410103 0.00000000 |
| 13739 | | Rotation angle (degrees) 0.06746852 |
| 13740 | | Shift along axis 0.01687983 |
| 13741 | | |
| 13742 | | |
| 13743 | | > hide #!3 models |
| 13744 | | |
| 13745 | | > show #!3 models |
| 13746 | | |
| 13747 | | > hide #!3 models |
| 13748 | | |
| 13749 | | > select clear |
| 13750 | | |
| 13751 | | > select #18,20,27/b,e |
| 13752 | | |
| 13753 | | 15774 atoms, 16030 bonds, 6 pseudobonds, 1252 residues, 6 models selected |
| 13754 | | |
| 13755 | | > select #18,20,27/a-f |
| 13756 | | |
| 13757 | | 47322 atoms, 48090 bonds, 18 pseudobonds, 3756 residues, 6 models selected |
| 13758 | | |
| 13759 | | > show sel ribbons |
| 13760 | | |
| 13761 | | > select #18,20,27/b,c,e |
| 13762 | | |
| 13763 | | 23661 atoms, 24045 bonds, 9 pseudobonds, 1878 residues, 6 models selected |
| 13764 | | |
| 13765 | | > select #18,20,27/b,c,e,f |
| 13766 | | |
| 13767 | | 31548 atoms, 32060 bonds, 12 pseudobonds, 2504 residues, 6 models selected |
| 13768 | | |
| 13769 | | > hide sel ribbons |
| 13770 | | |
| 13771 | | > select clear |
| 13772 | | |
| 13773 | | > show #!17 models |
| 13774 | | |
| 13775 | | > select #17/b/ |
| 13776 | | |
| 13777 | | Expected an objects specifier or a keyword |
| 13778 | | |
| 13779 | | > select #17/b |
| 13780 | | |
| 13781 | | 1921 atoms, 1954 bonds, 1 pseudobond, 211 residues, 2 models selected |
| 13782 | | |
| 13783 | | > hide sel ribbons |
| 13784 | | |
| 13785 | | > select clear |
| 13786 | | |
| 13787 | | > morph #18,20,17 |
| 13788 | | |
| 13789 | | Computed 101 frame morph #28 |
| 13790 | | |
| 13791 | | > coordset #28 1,101 |
| 13792 | | |
| 13793 | | > hide #!27 models |
| 13794 | | |
| 13795 | | > close #26 |
| 13796 | | |
| 13797 | | > select #17,20 |
| 13798 | | |
| 13799 | | 23310 atoms, 23790 bonds, 12 pseudobonds, 2502 residues, 4 models selected |
| 13800 | | |
| 13801 | | > show sel atoms |
| 13802 | | |
| 13803 | | > undo |
| 13804 | | |
| 13805 | | > select #17,20/a,d |
| 13806 | | |
| 13807 | | 7770 atoms, 7930 bonds, 4 pseudobonds, 834 residues, 4 models selected |
| 13808 | | |
| 13809 | | > show sel atoms |
| 13810 | | |
| 13811 | | > hide #!28 models |
| 13812 | | |
| 13813 | | > show #!17 models |
| 13814 | | |
| 13815 | | > show #!20 models |
| 13816 | | |
| 13817 | | > select add #20 |
| 13818 | | |
| 13819 | | 15626 atoms, 15974 bonds, 8 pseudobonds, 1658 residues, 8 models selected |
| 13820 | | |
| 13821 | | > select add #17 |
| 13822 | | |
| 13823 | | 23310 atoms, 23790 bonds, 12 pseudobonds, 2502 residues, 12 models selected |
| 13824 | | |
| 13825 | | > select subtract #20 |
| 13826 | | |
| 13827 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 14 models selected |
| 13828 | | |
| 13829 | | > select subtract #17 |
| 13830 | | |
| 13831 | | 6 models selected |
| 13832 | | |
| 13833 | | > select clear |
| 13834 | | |
| 13835 | | > select |
| 13836 | | > ::name="6OU"::name="CBO"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 13837 | | |
| 13838 | | 14490 atoms, 14322 bonds, 384 residues, 7 models selected |
| 13839 | | |
| 13840 | | > hide sel atoms |
| 13841 | | |
| 13842 | | > select clear |
| 13843 | | |
| 13844 | | > hide #!20 models |
| 13845 | | |
| 13846 | | > show #!28 models |
| 13847 | | |
| 13848 | | > hide #!17 models |
| 13849 | | |
| 13850 | | > show #!19 models |
| 13851 | | |
| 13852 | | > hide #!19 models |
| 13853 | | |
| 13854 | | > show #!4 models |
| 13855 | | |
| 13856 | | > hide #!4 models |
| 13857 | | |
| 13858 | | > show #!3 models |
| 13859 | | |
| 13860 | | > volume #3 level 0.1695 |
| 13861 | | |
| 13862 | | > hide #!3 models |
| 13863 | | |
| 13864 | | > hide #!28 models |
| 13865 | | |
| 13866 | | > show #!3 models |
| 13867 | | |
| 13868 | | > show #!5 models |
| 13869 | | |
| 13870 | | > hide #!5 models |
| 13871 | | |
| 13872 | | > hide #!3 models |
| 13873 | | |
| 13874 | | > show #!18 models |
| 13875 | | |
| 13876 | | > show #!20 models |
| 13877 | | |
| 13878 | | > show #!17 models |
| 13879 | | |
| 13880 | | > select #17,18,20 |
| 13881 | | |
| 13882 | | 34710 atoms, 35442 bonds, 18 pseudobonds, 3738 residues, 6 models selected |
| 13883 | | |
| 13884 | | > hide sel atoms |
| 13885 | | |
| 13886 | | > select #17,18,20:189 |
| 13887 | | |
| 13888 | | 198 atoms, 180 bonds, 18 residues, 3 models selected |
| 13889 | | |
| 13890 | | > show sel atoms |
| 13891 | | |
| 13892 | | > undo |
| 13893 | | |
| 13894 | | > select #17,18,20/a,d:189 |
| 13895 | | |
| 13896 | | 66 atoms, 60 bonds, 6 residues, 3 models selected |
| 13897 | | |
| 13898 | | > show sel atoms |
| 13899 | | |
| 13900 | | > select clear |
| 13901 | | |
| 13902 | | > show #!7 models |
| 13903 | | |
| 13904 | | > hide #!7 models |
| 13905 | | |
| 13906 | | > show #!5 models |
| 13907 | | |
| 13908 | | > hide #!5 models |
| 13909 | | |
| 13910 | | > show #!6 models |
| 13911 | | |
| 13912 | | > hide #!6 models |
| 13913 | | |
| 13914 | | > show #!19 models |
| 13915 | | |
| 13916 | | > hide #!20 models |
| 13917 | | |
| 13918 | | > hide #!18 models |
| 13919 | | |
| 13920 | | > hide #!17 models |
| 13921 | | |
| 13922 | | > show #!6 models |
| 13923 | | |
| 13924 | | > clip front 0 |
| 13925 | | |
| 13926 | | > transparency 50 |
| 13927 | | |
| 13928 | | > select add #19 |
| 13929 | | |
| 13930 | | 8550 atoms, 8838 bonds, 6 pseudobonds, 1014 residues, 2 models selected |
| 13931 | | |
| 13932 | | > toolshed show |
| 13933 | | |
| 13934 | | > ui tool show "Map Coordinates" |
| 13935 | | |
| 13936 | | > mlp sel |
| 13937 | | |
| 13938 | | Map values for surface "231009_CBX_HC_185.pdb_A SES surface": minimum -27.25, |
| 13939 | | mean 0.8939, maximum 24.32 |
| 13940 | | Map values for surface "231009_CBX_HC_185.pdb_B SES surface": minimum -27.68, |
| 13941 | | mean 0.9203, maximum 24.56 |
| 13942 | | Map values for surface "231009_CBX_HC_185.pdb_C SES surface": minimum -27.75, |
| 13943 | | mean 0.9056, maximum 24.54 |
| 13944 | | Map values for surface "231009_CBX_HC_185.pdb_D SES surface": minimum -27.64, |
| 13945 | | mean 0.9218, maximum 24.13 |
| 13946 | | Map values for surface "231009_CBX_HC_185.pdb_E SES surface": minimum -27.6, |
| 13947 | | mean 0.8945, maximum 23.94 |
| 13948 | | Map values for surface "231009_CBX_HC_185.pdb_F SES surface": minimum -26.79, |
| 13949 | | mean 0.9031, maximum 24.3 |
| 13950 | | To also show corresponding color key, enter the above mlp command and add key |
| 13951 | | true |
| 13952 | | |
| 13953 | | > hide sel surfaces |
| 13954 | | |
| 13955 | | > ~clip |
| 13956 | | |
| 13957 | | > hide #!6 models |
| 13958 | | |
| 13959 | | > select clear |
| 13960 | | |
| 13961 | | > show #!18 models |
| 13962 | | |
| 13963 | | > select #19/b,c,e,f |
| 13964 | | |
| 13965 | | 5700 atoms, 5892 bonds, 4 pseudobonds, 676 residues, 2 models selected |
| 13966 | | |
| 13967 | | > hide sel ribbons |
| 13968 | | |
| 13969 | | > select clear |
| 13970 | | |
| 13971 | | > select #19/A:189 |
| 13972 | | |
| 13973 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 13974 | | |
| 13975 | | > show sel atoms |
| 13976 | | |
| 13977 | | > style sel stick |
| 13978 | | |
| 13979 | | Changed 11 atom styles |
| 13980 | | |
| 13981 | | > select clear |
| 13982 | | |
| 13983 | | > show #!17 models |
| 13984 | | |
| 13985 | | > select #18,19 |
| 13986 | | |
| 13987 | | 19950 atoms, 20490 bonds, 12 pseudobonds, 2250 residues, 4 models selected |
| 13988 | | |
| 13989 | | > show sel ribbons |
| 13990 | | |
| 13991 | | > select clear |
| 13992 | | |
| 13993 | | > select add #17 |
| 13994 | | |
| 13995 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 13996 | | |
| 13997 | | > select add #18 |
| 13998 | | |
| 13999 | | 22926 atoms, 23376 bonds, 12 pseudobonds, 2502 residues, 10 models selected |
| 14000 | | |
| 14001 | | > select add #19 |
| 14002 | | |
| 14003 | | 31476 atoms, 32214 bonds, 18 pseudobonds, 3516 residues, 18 models selected |
| 14004 | | |
| 14005 | | > mlp sel |
| 14006 | | |
| 14007 | | Map values for surface "230904_Chol_HC_150.pdb_A SES surface": minimum -27.81, |
| 14008 | | mean 0.2398, maximum 23.77 |
| 14009 | | Map values for surface "230904_Chol_HC_150.pdb_B SES surface": minimum -28.02, |
| 14010 | | mean 0.1575, maximum 25.32 |
| 14011 | | Map values for surface "230904_Chol_HC_150.pdb_C SES surface": minimum -27.98, |
| 14012 | | mean 0.1448, maximum 24.75 |
| 14013 | | Map values for surface "230904_Chol_HC_150.pdb_D SES surface": minimum -27.85, |
| 14014 | | mean 0.2229, maximum 24.89 |
| 14015 | | Map values for surface "230904_Chol_HC_150.pdb_E SES surface": minimum -27.89, |
| 14016 | | mean 0.1407, maximum 24.78 |
| 14017 | | Map values for surface "230904_Chol_HC_150.pdb_F SES surface": minimum -27.69, |
| 14018 | | mean 0.1488, maximum 25.26 |
| 14019 | | Map values for surface "231006_PIP2_HC_90.pdb_A SES surface": minimum -27.87, |
| 14020 | | mean 0.03368, maximum 24.91 |
| 14021 | | Map values for surface "231006_PIP2_HC_90.pdb_B SES surface": minimum -27.78, |
| 14022 | | mean 0.02854, maximum 26.05 |
| 14023 | | Map values for surface "231006_PIP2_HC_90.pdb_C SES surface": minimum -28.52, |
| 14024 | | mean -0.002751, maximum 23.5 |
| 14025 | | Map values for surface "231006_PIP2_HC_90.pdb_D SES surface": minimum -27.98, |
| 14026 | | mean 0.0383, maximum 26.17 |
| 14027 | | Map values for surface "231006_PIP2_HC_90.pdb_E SES surface": minimum -27.97, |
| 14028 | | mean 0.03508, maximum 25.06 |
| 14029 | | Map values for surface "231006_PIP2_HC_90.pdb_F SES surface": minimum -27.96, |
| 14030 | | mean -0.0197, maximum 23.57 |
| 14031 | | Map values for surface "231009_CBX_HC_185.pdb_A SES surface": minimum -27.25, |
| 14032 | | mean 0.8939, maximum 24.32 |
| 14033 | | Map values for surface "231009_CBX_HC_185.pdb_B SES surface": minimum -27.68, |
| 14034 | | mean 0.9203, maximum 24.56 |
| 14035 | | Map values for surface "231009_CBX_HC_185.pdb_C SES surface": minimum -27.75, |
| 14036 | | mean 0.9056, maximum 24.54 |
| 14037 | | Map values for surface "231009_CBX_HC_185.pdb_D SES surface": minimum -27.64, |
| 14038 | | mean 0.9218, maximum 24.13 |
| 14039 | | Map values for surface "231009_CBX_HC_185.pdb_E SES surface": minimum -27.6, |
| 14040 | | mean 0.8945, maximum 23.94 |
| 14041 | | Map values for surface "231009_CBX_HC_185.pdb_F SES surface": minimum -26.79, |
| 14042 | | mean 0.9031, maximum 24.3 |
| 14043 | | To also show corresponding color key, enter the above mlp command and add key |
| 14044 | | true |
| 14045 | | |
| 14046 | | > hide #!19 models |
| 14047 | | |
| 14048 | | > hide #!18 models |
| 14049 | | |
| 14050 | | > select subtract #19 |
| 14051 | | |
| 14052 | | 22926 atoms, 23376 bonds, 12 pseudobonds, 2502 residues, 22 models selected |
| 14053 | | |
| 14054 | | > select subtract #18 |
| 14055 | | |
| 14056 | | 11526 atoms, 11724 bonds, 6 pseudobonds, 1266 residues, 14 models selected |
| 14057 | | |
| 14058 | | > select subtract #17 |
| 14059 | | |
| 14060 | | 6 models selected |
| 14061 | | |
| 14062 | | > select clear |
| 14063 | | |
| 14064 | | > show #!18 models |
| 14065 | | |
| 14066 | | > hide #!17 models |
| 14067 | | |
| 14068 | | > show #!19 models |
| 14069 | | |
| 14070 | | > hide #!18 models |
| 14071 | | |
| 14072 | | > show #!18 models |
| 14073 | | |
| 14074 | | > hide #!19 models |
| 14075 | | |
| 14076 | | > show #!19 models |
| 14077 | | |
| 14078 | | > hide #!18 models |
| 14079 | | |
| 14080 | | > show #!18 models |
| 14081 | | |
| 14082 | | > hide #!19 models |
| 14083 | | |
| 14084 | | > show #!19 models |
| 14085 | | |
| 14086 | | > hide #!18 models |
| 14087 | | |
| 14088 | | > select ::name="CBO" |
| 14089 | | |
| 14090 | | 246 atoms, 270 bonds, 6 residues, 1 model selected |
| 14091 | | |
| 14092 | | > show sel atoms |
| 14093 | | |
| 14094 | | > select clear |
| 14095 | | |
| 14096 | | > show #!18 models |
| 14097 | | |
| 14098 | | > hide #!18 models |
| 14099 | | |
| 14100 | | > show #!5 models |
| 14101 | | |
| 14102 | | > hide #!5 models |
| 14103 | | |
| 14104 | | > show #!6 models |
| 14105 | | |
| 14106 | | > save "C:/Users/OJS/OneDrive - |
| 14107 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/230903_All_Align.cxs" |
| 14108 | | |
| 14109 | | ——— End of log from Mon Oct 9 18:51:11 2023 ——— |
| 14110 | | |
| 14111 | | opened ChimeraX session |
| 14112 | | |
| 14113 | | > save "C:/Users/OJS/OneDrive - |
| 14114 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 14115 | | |
| 14116 | | > close #9-12 |
| 14117 | | |
| 14118 | | > close #13-16 |
| 14119 | | |
| 14120 | | > show #!17 models |
| 14121 | | |
| 14122 | | > hide #!17 models |
| 14123 | | |
| 14124 | | > hide #!6 models |
| 14125 | | |
| 14126 | | > hide #!19 models |
| 14127 | | |
| 14128 | | > show #!27 models |
| 14129 | | |
| 14130 | | > close #28 |
| 14131 | | |
| 14132 | | > close #30-31 |
| 14133 | | |
| 14134 | | > show #!23 models |
| 14135 | | |
| 14136 | | > close #21 |
| 14137 | | |
| 14138 | | > hide #!23 models |
| 14139 | | |
| 14140 | | > hide #!27 models |
| 14141 | | |
| 14142 | | > show #!1 models |
| 14143 | | |
| 14144 | | > hide #!1 models |
| 14145 | | |
| 14146 | | > show #!17 models |
| 14147 | | |
| 14148 | | > hide #!17 atoms |
| 14149 | | |
| 14150 | | > show #!17 cartoons |
| 14151 | | |
| 14152 | | > hide #!17 surfaces |
| 14153 | | |
| 14154 | | > save "C:/Users/OJS/OneDrive - |
| 14155 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 14156 | | |
| 14157 | | ——— End of log from Wed Oct 11 22:08:58 2023 ——— |
| 14158 | | |
| 14159 | | opened ChimeraX session |
| 14160 | | |
| 14161 | | > close #1 |
| 14162 | | |
| 14163 | | > close #5-6 |
| 14164 | | |
| 14165 | | > close #24-25 |
| 14166 | | |
| 14167 | | > close #23 |
| 14168 | | |
| 14169 | | > close #22 |
| 14170 | | |
| 14171 | | > rename #2 id #1 |
| 14172 | | |
| 14173 | | > select clear |
| 14174 | | |
| 14175 | | > open "C:/Users/OJS/OneDrive - |
| 14176 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/N55H_Chol_P52_J694_007_volume_map_sharp.mrc" |
| 14177 | | |
| 14178 | | Opened N55H_Chol_P52_J694_007_volume_map_sharp.mrc as #2, grid size |
| 14179 | | 400,400,400, pixel 0.83, shown at level 0.0479, step 2, values float32 |
| 14180 | | |
| 14181 | | > open "C:/Users/OJS/OneDrive - |
| 14182 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/N55H_MBCD_P74_J90_011_volume_map_sharp.mrc" |
| 14183 | | |
| 14184 | | Opened N55H_MBCD_P74_J90_011_volume_map_sharp.mrc as #3, grid size |
| 14185 | | 320,320,320, pixel 0.848, shown at level 0.0961, step 2, values float32 |
| 14186 | | |
| 14187 | | > close #17 |
| 14188 | | |
| 14189 | | > hide #!3 models |
| 14190 | | |
| 14191 | | > show #!3 models |
| 14192 | | |
| 14193 | | > hide #!3 models |
| 14194 | | |
| 14195 | | > color #2 #00aaffff models |
| 14196 | | |
| 14197 | | > color #3 #aaff7fff models |
| 14198 | | |
| 14199 | | > volume #3 step 1 |
| 14200 | | |
| 14201 | | > volume #2 step 1 |
| 14202 | | |
| 14203 | | > volume #2 level 0.1116 |
| 14204 | | |
| 14205 | | > volume #3 level 0.2065 |
| 14206 | | |
| 14207 | | > hide #!2 models |
| 14208 | | |
| 14209 | | > hide #!3 models |
| 14210 | | |
| 14211 | | > show #!3 models |
| 14212 | | |
| 14213 | | > show #!1 models |
| 14214 | | |
| 14215 | | > transparency 0 |
| 14216 | | |
| 14217 | | > select clear |
| 14218 | | |
| 14219 | | > volume #1 level 0.1806 |
| 14220 | | |
| 14221 | | > select add #1 |
| 14222 | | |
| 14223 | | 2 models selected |
| 14224 | | |
| 14225 | | > ui mousemode right "rotate selected models" |
| 14226 | | |
| 14227 | | > view matrix models |
| 14228 | | > #1,-0.79312,0.52083,-0.31575,208.34,0.41275,0.84084,0.35017,-163.53,0.44788,0.1474,-0.88186,147.46 |
| 14229 | | |
| 14230 | | > ui mousemode right "translate selected models" |
| 14231 | | |
| 14232 | | > view matrix models |
| 14233 | | > #1,-0.79312,0.52083,-0.31575,244.16,0.41275,0.84084,0.35017,-141.54,0.44788,0.1474,-0.88186,187.53 |
| 14234 | | |
| 14235 | | > view matrix models |
| 14236 | | > #1,-0.79312,0.52083,-0.31575,226.98,0.41275,0.84084,0.35017,-127.74,0.44788,0.1474,-0.88186,196.76 |
| 14237 | | |
| 14238 | | > ui mousemode right "rotate selected models" |
| 14239 | | |
| 14240 | | > view matrix models |
| 14241 | | > #1,-0.92951,0.14352,-0.33972,318.17,0.028796,0.9466,0.32112,-75.624,0.36767,0.2887,-0.88401,186.76 |
| 14242 | | |
| 14243 | | > view matrix models |
| 14244 | | > #1,-0.98197,0.12694,-0.14005,295.97,0.089563,0.96495,0.24666,-76.397,0.16646,0.22967,-0.95893,243.62 |
| 14245 | | |
| 14246 | | > toolshed show |
| 14247 | | |
| 14248 | | > ui tool show "Fit in Map" |
| 14249 | | |
| 14250 | | > fitmap #1 inMap #3 |
| 14251 | | |
| 14252 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 14253 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 14254 | | correlation = 0.248, correlation about mean = 0.03376, overlap = 2667 |
| 14255 | | steps = 76, shift = 2.69, angle = 4.35 degrees |
| 14256 | | |
| 14257 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 14258 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 14259 | | Matrix rotation and translation |
| 14260 | | -0.96800472 0.13024566 -0.21448297 305.25999499 |
| 14261 | | 0.07646141 0.96719665 0.24224841 -72.08097845 |
| 14262 | | 0.23899901 0.21809793 -0.94620969 233.17143977 |
| 14263 | | Axis -0.05281119 -0.99165425 -0.11761300 |
| 14264 | | Axis point 140.73621938 0.00000000 138.77882372 |
| 14265 | | Rotation angle (degrees) 166.78244019 |
| 14266 | | Shift along axis 27.93427222 |
| 14267 | | |
| 14268 | | |
| 14269 | | > view matrix models |
| 14270 | | > #1,-0.69836,0.63297,-0.33412,194.58,0.58026,0.77399,0.25345,-126.66,0.41903,-0.016874,-0.90782,235.97 |
| 14271 | | |
| 14272 | | > view matrix models |
| 14273 | | > #1,-0.72837,0.67163,-0.13563,159.41,0.68297,0.72755,-0.06494,-82.133,0.05506,-0.13993,-0.98863,332.29 |
| 14274 | | |
| 14275 | | > ui mousemode right "translate selected models" |
| 14276 | | |
| 14277 | | > view matrix models |
| 14278 | | > #1,-0.72837,0.67163,-0.13563,165.63,0.68297,0.72755,-0.06494,-91.481,0.05506,-0.13993,-0.98863,325.42 |
| 14279 | | |
| 14280 | | > ui mousemode right "rotate selected models" |
| 14281 | | |
| 14282 | | > view matrix models |
| 14283 | | > #1,-0.70787,0.70342,0.064143,122.83,0.69248,0.70902,-0.13328,-78.344,-0.13923,-0.04993,-0.989,343.17 |
| 14284 | | |
| 14285 | | > view matrix models |
| 14286 | | > #1,-0.80406,0.59026,0.071239,157.13,0.58326,0.80635,-0.098009,-82.318,-0.11529,-0.037254,-0.99263,337.58 |
| 14287 | | |
| 14288 | | > view matrix models |
| 14289 | | > #1,-0.80153,0.59795,-0.00097825,167.66,0.59723,0.80048,-0.050363,-91.785,-0.029332,-0.040952,-0.99873,324.66 |
| 14290 | | |
| 14291 | | > view matrix models |
| 14292 | | > #1,-0.99762,0.056818,-0.03917,299.18,0.055237,0.99766,0.040323,-48.704,0.041369,0.038063,-0.99842,299.22 |
| 14293 | | |
| 14294 | | > fitmap #1 inMap #3 |
| 14295 | | |
| 14296 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 14297 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 14298 | | correlation = 0.8993, correlation about mean = 0.7271, overlap = 1.914e+04 |
| 14299 | | steps = 68, shift = 3.26, angle = 4.36 degrees |
| 14300 | | |
| 14301 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 14302 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 14303 | | Matrix rotation and translation |
| 14304 | | -0.99998879 0.00473509 0.00001750 304.47209732 |
| 14305 | | 0.00473509 0.99998879 -0.00001293 -34.72064256 |
| 14306 | | -0.00001756 -0.00001284 -1.00000000 314.58735126 |
| 14307 | | Axis 0.00237420 0.99999718 -0.00000513 |
| 14308 | | Axis point 152.27864430 0.00000000 157.29225175 |
| 14309 | | Rotation angle (degrees) 179.99899558 |
| 14310 | | Shift along axis -33.99928351 |
| 14311 | | |
| 14312 | | |
| 14313 | | > fitmap #1 inMap #3 |
| 14314 | | |
| 14315 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 14316 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 14317 | | correlation = 0.8992, correlation about mean = 0.727, overlap = 1.915e+04 |
| 14318 | | steps = 28, shift = 0.00965, angle = 0.014 degrees |
| 14319 | | |
| 14320 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 14321 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 14322 | | Matrix rotation and translation |
| 14323 | | -0.99998926 0.00463256 0.00016946 304.47199012 |
| 14324 | | 0.00463253 0.99998926 -0.00017326 -34.68167225 |
| 14325 | | -0.00017026 -0.00017248 -0.99999997 314.63977891 |
| 14326 | | Axis 0.00231696 0.99999731 -0.00008630 |
| 14327 | | Axis point 152.28953408 0.00000000 157.30546041 |
| 14328 | | Rotation angle (degrees) 179.99026794 |
| 14329 | | Shift along axis -34.00328200 |
| 14330 | | |
| 14331 | | |
| 14332 | | > fitmap #1 inMap #3 |
| 14333 | | |
| 14334 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 14335 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 14336 | | correlation = 0.8992, correlation about mean = 0.727, overlap = 1.915e+04 |
| 14337 | | steps = 28, shift = 0.00937, angle = 0.0112 degrees |
| 14338 | | |
| 14339 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 14340 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 14341 | | Matrix rotation and translation |
| 14342 | | -0.99998933 0.00461524 0.00021359 304.47096569 |
| 14343 | | 0.00461524 0.99998935 0.00001560 -34.70185674 |
| 14344 | | -0.00021351 0.00001659 -0.99999998 314.61478599 |
| 14345 | | Axis 0.00230817 0.99999734 0.00000815 |
| 14346 | | Axis point 152.29232858 0.00000000 157.29127515 |
| 14347 | | Rotation angle (degrees) 179.98776438 |
| 14348 | | Shift along axis -33.99642777 |
| 14349 | | |
| 14350 | | |
| 14351 | | > select clear |
| 14352 | | |
| 14353 | | > rename #3 id #4 |
| 14354 | | |
| 14355 | | > select clear |
| 14356 | | |
| 14357 | | > open "C:/Users/OJS/OneDrive - |
| 14358 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/N55H_CBX_P52_J660_003_volume_map_sharp.mrc" |
| 14359 | | |
| 14360 | | Opened N55H_CBX_P52_J660_003_volume_map_sharp.mrc as #3, grid size |
| 14361 | | 400,400,400, pixel 0.83, shown at level 0.0426, step 2, values float32 |
| 14362 | | |
| 14363 | | > color #3 #aa55ffff models |
| 14364 | | |
| 14365 | | > volume #3 step 1 |
| 14366 | | |
| 14367 | | > volume #3 level 0.07019 |
| 14368 | | |
| 14369 | | > ui mousemode right "rotate selected models" |
| 14370 | | |
| 14371 | | > select add #3 |
| 14372 | | |
| 14373 | | 2 models selected |
| 14374 | | |
| 14375 | | > view matrix models |
| 14376 | | > #3,-0.45256,-0.89173,-0.0031919,389.67,-0.88947,0.45167,-0.069603,249.9,0.063508,-0.028661,-0.99757,316.42 |
| 14377 | | |
| 14378 | | > ui mousemode right "translate selected models" |
| 14379 | | |
| 14380 | | > view matrix models |
| 14381 | | > #3,-0.45256,-0.89173,-0.0031919,383.69,-0.88947,0.45167,-0.069603,217.56,0.063508,-0.028661,-0.99757,325.58 |
| 14382 | | |
| 14383 | | > view matrix models |
| 14384 | | > #3,-0.45256,-0.89173,-0.0031919,365.91,-0.88947,0.45167,-0.069603,227.14,0.063508,-0.028661,-0.99757,306.19 |
| 14385 | | |
| 14386 | | > view matrix models |
| 14387 | | > #3,-0.45256,-0.89173,-0.0031919,358.12,-0.88947,0.45167,-0.069603,223.17,0.063508,-0.028661,-0.99757,306.19 |
| 14388 | | |
| 14389 | | > ui mousemode right "rotate selected models" |
| 14390 | | |
| 14391 | | > view matrix models |
| 14392 | | > #3,-0.67587,-0.73692,0.011781,367.08,-0.7363,0.67443,-0.05472,158.37,0.032379,-0.045659,-0.99843,314.32 |
| 14393 | | |
| 14394 | | > view matrix models |
| 14395 | | > #3,-0.67692,-0.73329,-0.063747,378.83,-0.73518,0.6778,0.0099676,147.19,0.035899,0.053613,-0.99792,297.17 |
| 14396 | | |
| 14397 | | > ui mousemode right "translate selected models" |
| 14398 | | |
| 14399 | | > view matrix models |
| 14400 | | > #3,-0.67692,-0.73329,-0.063747,378.4,-0.73518,0.6778,0.0099676,142.95,0.035899,0.053613,-0.99792,297.64 |
| 14401 | | |
| 14402 | | > ui tool show "Fit in Map" |
| 14403 | | |
| 14404 | | > fitmap #1 inMap #4 |
| 14405 | | |
| 14406 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 14407 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 14408 | | correlation = 0.8993, correlation about mean = 0.7271, overlap = 1.913e+04 |
| 14409 | | steps = 40, shift = 0.0183, angle = 0.0205 degrees |
| 14410 | | |
| 14411 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 14412 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 14413 | | Matrix rotation and translation |
| 14414 | | -0.99998848 0.00480089 -0.00008628 304.47230288 |
| 14415 | | 0.00480090 0.99998848 -0.00004151 -34.72885365 |
| 14416 | | 0.00008608 -0.00004193 -1.00000000 314.57499947 |
| 14417 | | Axis -0.00239910 -0.99999712 0.00002113 |
| 14418 | | Axis point 152.27103308 0.00000000 157.29369455 |
| 14419 | | Rotation angle (degrees) 179.99506223 |
| 14420 | | Shift along axis 34.00493870 |
| 14421 | | |
| 14422 | | |
| 14423 | | > fitmap #1 inMap #4 |
| 14424 | | |
| 14425 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 14426 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 14427 | | correlation = 0.8993, correlation about mean = 0.7271, overlap = 1.913e+04 |
| 14428 | | steps = 40, shift = 0.0122, angle = 0.0122 degrees |
| 14429 | | |
| 14430 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 14431 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 14432 | | Matrix rotation and translation |
| 14433 | | -0.99998873 0.00474826 0.00009038 304.46153879 |
| 14434 | | 0.00474827 0.99998873 0.00006400 -34.73078697 |
| 14435 | | -0.00009007 0.00006443 -1.00000000 314.58645395 |
| 14436 | | Axis 0.00237543 0.99999718 0.00003236 |
| 14437 | | Axis point 152.27911560 0.00000000 157.28691968 |
| 14438 | | Rotation angle (degrees) 179.99483056 |
| 14439 | | Shift along axis -33.99728205 |
| 14440 | | |
| 14441 | | |
| 14442 | | > fitmap #3 inMap #4 |
| 14443 | | |
| 14444 | | Fit map N55H_CBX_P52_J660_003_volume_map_sharp.mrc in map |
| 14445 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 148192 points |
| 14446 | | correlation = 0.3593, correlation about mean = 0.113, overlap = 2580 |
| 14447 | | steps = 80, shift = 6.8, angle = 5.24 degrees |
| 14448 | | |
| 14449 | | Position of N55H_CBX_P52_J660_003_volume_map_sharp.mrc (#3) relative to |
| 14450 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 14451 | | Matrix rotation and translation |
| 14452 | | -0.72412235 -0.68967154 0.00003392 370.35945177 |
| 14453 | | -0.68967154 0.72412235 0.00000524 129.96262540 |
| 14454 | | -0.00002818 -0.00001960 -1.00000000 306.21828459 |
| 14455 | | Axis -0.37140363 0.92847151 -0.00000463 |
| 14456 | | Axis point 211.17606000 0.00000000 153.10618832 |
| 14457 | | Rotation angle (degrees) 179.99808406 |
| 14458 | | Shift along axis -16.88766962 |
| 14459 | | |
| 14460 | | |
| 14461 | | > fitmap #3 inMap #4 |
| 14462 | | |
| 14463 | | Fit map N55H_CBX_P52_J660_003_volume_map_sharp.mrc in map |
| 14464 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 148192 points |
| 14465 | | correlation = 0.3593, correlation about mean = 0.113, overlap = 2580 |
| 14466 | | steps = 48, shift = 0.00534, angle = 0.00559 degrees |
| 14467 | | |
| 14468 | | Position of N55H_CBX_P52_J660_003_volume_map_sharp.mrc (#3) relative to |
| 14469 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 14470 | | Matrix rotation and translation |
| 14471 | | -0.72415435 -0.68963794 -0.00005170 370.36932586 |
| 14472 | | -0.68963794 0.72415435 0.00001126 129.95481598 |
| 14473 | | 0.00002967 0.00004381 -1.00000000 306.19705658 |
| 14474 | | Axis 0.37137775 -0.92848186 -0.00001542 |
| 14475 | | Axis point 211.17096401 0.00000000 153.10174492 |
| 14476 | | Rotation angle (degrees) 179.99748956 |
| 14477 | | Shift along axis 16.88151512 |
| 14478 | | |
| 14479 | | |
| 14480 | | > select clear |
| 14481 | | |
| 14482 | | [Repeated 1 time(s)] |
| 14483 | | |
| 14484 | | > close #18-20 |
| 14485 | | |
| 14486 | | > hide #!3 models |
| 14487 | | |
| 14488 | | > hide #!4 models |
| 14489 | | |
| 14490 | | > hide #!1 models |
| 14491 | | |
| 14492 | | > show #!4 models |
| 14493 | | |
| 14494 | | > open |
| 14495 | | > C:/Users/OJS/Desktop/Phenix/230901_MBCD_Chol_N55H/RealSpaceRefine_37/231026_From37_real_space_refined_037.pdb |
| 14496 | | |
| 14497 | | Chain information for 231026_From37_real_space_refined_037.pdb #5 |
| 14498 | | --- |
| 14499 | | Chain | Description |
| 14500 | | A B C D E F | No description available |
| 14501 | | |
| 14502 | | |
| 14503 | | > hide #!5 atoms |
| 14504 | | |
| 14505 | | > show #!5 cartoons |
| 14506 | | |
| 14507 | | > color #4 #aaff7fff models |
| 14508 | | |
| 14509 | | > color #5 #aaff7fff |
| 14510 | | |
| 14511 | | > transparency 10 |
| 14512 | | |
| 14513 | | > transparency 50 |
| 14514 | | |
| 14515 | | > transparency 80 |
| 14516 | | |
| 14517 | | > select clear |
| 14518 | | |
| 14519 | | > transparency 50 |
| 14520 | | |
| 14521 | | > transparency 10 |
| 14522 | | |
| 14523 | | > lighting simple |
| 14524 | | |
| 14525 | | > transparency 30 |
| 14526 | | |
| 14527 | | > transparency 50 |
| 14528 | | |
| 14529 | | > select clear |
| 14530 | | |
| 14531 | | > volume #4 level 0.2772 |
| 14532 | | |
| 14533 | | > close #5 |
| 14534 | | |
| 14535 | | > open "C:/Users/OJS/OneDrive - |
| 14536 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/231026_N55H_MBCD_37_wo_water.pdb" |
| 14537 | | |
| 14538 | | Chain information for 231026_N55H_MBCD_37_wo_water.pdb #5 |
| 14539 | | --- |
| 14540 | | Chain | Description |
| 14541 | | A B C D E F | No description available |
| 14542 | | |
| 14543 | | |
| 14544 | | > volume #4 level 0.2065 |
| 14545 | | |
| 14546 | | > volume #4 level 0.1411 |
| 14547 | | |
| 14548 | | > hide #!5 models |
| 14549 | | |
| 14550 | | > open |
| 14551 | | > C:/Users/OJS/Desktop/Phenix/230901_MBCD_Chol_N55H/RealSpaceRefine_39/231030_From37_real_space_refined_037-coot-0_real_space_refined_039.pdb |
| 14552 | | |
| 14553 | | Chain information for |
| 14554 | | 231030_From37_real_space_refined_037-coot-0_real_space_refined_039.pdb #6 |
| 14555 | | --- |
| 14556 | | Chain | Description |
| 14557 | | A B C D E F | No description available |
| 14558 | | |
| 14559 | | |
| 14560 | | > show #!5 models |
| 14561 | | |
| 14562 | | > hide #!5 models |
| 14563 | | |
| 14564 | | > show #!5 models |
| 14565 | | |
| 14566 | | > hide #!5 models |
| 14567 | | |
| 14568 | | > show #!5 models |
| 14569 | | |
| 14570 | | > hide #!5 models |
| 14571 | | |
| 14572 | | > show #!5 models |
| 14573 | | |
| 14574 | | > hide #!5 models |
| 14575 | | |
| 14576 | | > show #!5 models |
| 14577 | | |
| 14578 | | > hide #!5 models |
| 14579 | | |
| 14580 | | > show #!5 models |
| 14581 | | |
| 14582 | | > hide #!5 models |
| 14583 | | |
| 14584 | | > show #!5 models |
| 14585 | | |
| 14586 | | > hide #!5 models |
| 14587 | | |
| 14588 | | > show #!5 models |
| 14589 | | |
| 14590 | | > hide #!5 models |
| 14591 | | |
| 14592 | | > show #!5 models |
| 14593 | | |
| 14594 | | > hide #!5 models |
| 14595 | | |
| 14596 | | > hide #!6 atoms |
| 14597 | | |
| 14598 | | > show #!6 cartoons |
| 14599 | | |
| 14600 | | > close #6 |
| 14601 | | |
| 14602 | | > rename #5 id #8 |
| 14603 | | |
| 14604 | | > select clear |
| 14605 | | |
| 14606 | | > show #!8 models |
| 14607 | | |
| 14608 | | > hide #!8 atoms |
| 14609 | | |
| 14610 | | > show #!8 cartoons |
| 14611 | | |
| 14612 | | > color #8 #aaff7fff |
| 14613 | | |
| 14614 | | > select clear |
| 14615 | | |
| 14616 | | > show #!3 models |
| 14617 | | |
| 14618 | | > hide #!3 models |
| 14619 | | |
| 14620 | | > show #!2 models |
| 14621 | | |
| 14622 | | > combine #4 |
| 14623 | | |
| 14624 | | No structures specified |
| 14625 | | |
| 14626 | | > combine #8 |
| 14627 | | |
| 14628 | | > select add #5 |
| 14629 | | |
| 14630 | | 11646 atoms, 11886 bonds, 6 pseudobonds, 1230 residues, 2 models selected |
| 14631 | | |
| 14632 | | > ui mousemode right "rotate selected models" |
| 14633 | | |
| 14634 | | > hide #!5 models |
| 14635 | | |
| 14636 | | > show #!5 models |
| 14637 | | |
| 14638 | | > hide #!8 models |
| 14639 | | |
| 14640 | | > hide #!4 models |
| 14641 | | |
| 14642 | | > view matrix models |
| 14643 | | > #5,0.99888,-0.042557,-0.020451,8.8276,0.038163,0.98274,-0.18101,22.85,0.027802,0.18003,0.98327,-25.824 |
| 14644 | | |
| 14645 | | > ui mousemode right "translate selected models" |
| 14646 | | |
| 14647 | | > view matrix models |
| 14648 | | > #5,0.99888,-0.042557,-0.020451,46.966,0.038163,0.98274,-0.18101,45.263,0.027802,0.18003,0.98327,-16.32 |
| 14649 | | |
| 14650 | | > view matrix models |
| 14651 | | > #5,0.99888,-0.042557,-0.020451,46.151,0.038163,0.98274,-0.18101,48.522,0.027802,0.18003,0.98327,0.076006 |
| 14652 | | |
| 14653 | | > ui mousemode right "rotate selected models" |
| 14654 | | |
| 14655 | | > view matrix models |
| 14656 | | > #5,0.97918,0.15163,0.13495,0.42631,-0.1337,0.98202,-0.1333,65.168,-0.15273,0.11248,0.98185,33.937 |
| 14657 | | |
| 14658 | | > ui mousemode right "translate selected models" |
| 14659 | | |
| 14660 | | > view matrix models |
| 14661 | | > #5,0.97918,0.15163,0.13495,-4.5765,-0.1337,0.98202,-0.1333,67.53,-0.15273,0.11248,0.98185,29.115 |
| 14662 | | |
| 14663 | | > view matrix models |
| 14664 | | > #5,0.97918,0.15163,0.13495,-3.136,-0.1337,0.98202,-0.1333,66.674,-0.15273,0.11248,0.98185,29.005 |
| 14665 | | |
| 14666 | | > view matrix models |
| 14667 | | > #5,0.97918,0.15163,0.13495,-5.0975,-0.1337,0.98202,-0.1333,66.444,-0.15273,0.11248,0.98185,33.531 |
| 14668 | | |
| 14669 | | > fitmap #3 inMap #4 |
| 14670 | | |
| 14671 | | Fit map N55H_CBX_P52_J660_003_volume_map_sharp.mrc in map |
| 14672 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 148192 points |
| 14673 | | correlation = 0.3593, correlation about mean = 0.113, overlap = 2580 |
| 14674 | | steps = 44, shift = 0.00592, angle = 0.00353 degrees |
| 14675 | | |
| 14676 | | Position of N55H_CBX_P52_J660_003_volume_map_sharp.mrc (#3) relative to |
| 14677 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 14678 | | Matrix rotation and translation |
| 14679 | | -0.72414853 -0.68964405 0.00000850 370.36472276 |
| 14680 | | -0.68964405 0.72414853 0.00000079 129.95511441 |
| 14681 | | -0.00000670 -0.00000529 -1.00000000 306.21206689 |
| 14682 | | Axis -0.37139361 0.92847552 -0.00000437 |
| 14683 | | Axis point 211.17429793 0.00000000 153.10553603 |
| 14684 | | Rotation angle (degrees) 179.99953072 |
| 14685 | | Shift along axis -16.89228728 |
| 14686 | | |
| 14687 | | |
| 14688 | | > fitmap #5 inMap #2 |
| 14689 | | |
| 14690 | | Fit molecule copy of 231026_N55H_MBCD_37_wo_water.pdb (#5) to map |
| 14691 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 11646 atoms |
| 14692 | | average map value = 0.1957, steps = 112 |
| 14693 | | shifted from previous position = 3.98 |
| 14694 | | rotated from previous position = 10.9 degrees |
| 14695 | | atoms outside contour = 5015, contour level = 0.11163 |
| 14696 | | |
| 14697 | | Position of copy of 231026_N55H_MBCD_37_wo_water.pdb (#5) relative to |
| 14698 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 14699 | | Matrix rotation and translation |
| 14700 | | 0.98819065 0.15322939 0.00004404 11.12409425 |
| 14701 | | -0.15322938 0.98819064 -0.00012641 52.73700166 |
| 14702 | | -0.00006289 0.00011817 0.99999999 24.64088949 |
| 14703 | | Axis 0.00079811 0.00034889 -0.99999962 |
| 14704 | | Axis point 347.76565965 -45.92363449 0.00000000 |
| 14705 | | Rotation angle (degrees) 8.81412433 |
| 14706 | | Shift along axis -24.61360236 |
| 14707 | | |
| 14708 | | |
| 14709 | | > select clear |
| 14710 | | |
| 14711 | | > save |
| 14712 | | > C:/Users/OJS/Desktop/Phenix/220302_Cx43_N55H_CBX/MBCD_37_N55H_Chol_P52_J694_Fit.pdb |
| 14713 | | > models #5 |
| 14714 | | |
| 14715 | | > hide #!5 models |
| 14716 | | |
| 14717 | | > close #5 |
| 14718 | | |
| 14719 | | > show #!8 models |
| 14720 | | |
| 14721 | | > show #!4 models |
| 14722 | | |
| 14723 | | > hide #!2 models |
| 14724 | | |
| 14725 | | > volume #4 level 0.2579 |
| 14726 | | |
| 14727 | | > combine #8 |
| 14728 | | |
| 14729 | | > hide #!4 models |
| 14730 | | |
| 14731 | | > hide #!8 models |
| 14732 | | |
| 14733 | | > show #!2 models |
| 14734 | | |
| 14735 | | > hide #!2 models |
| 14736 | | |
| 14737 | | > show #!3 models |
| 14738 | | |
| 14739 | | > volume #3 level 0.05963 |
| 14740 | | |
| 14741 | | > close #5 |
| 14742 | | |
| 14743 | | > show #!2 models |
| 14744 | | |
| 14745 | | > hide #!2 models |
| 14746 | | |
| 14747 | | > show #!2 models |
| 14748 | | |
| 14749 | | > show #!4 models |
| 14750 | | |
| 14751 | | > hide #!2 models |
| 14752 | | |
| 14753 | | > show #!1 models |
| 14754 | | |
| 14755 | | > hide #!1 models |
| 14756 | | |
| 14757 | | > volume #2 level 0.1711 |
| 14758 | | |
| 14759 | | > volume #3 level 0.07263 |
| 14760 | | |
| 14761 | | > ui mousemode right "translate selected models" |
| 14762 | | |
| 14763 | | > select add #2 |
| 14764 | | |
| 14765 | | 2 models selected |
| 14766 | | |
| 14767 | | > view matrix models #2,1,0,0,-38.708,0,1,0,-17.382,0,0,1,-23.787 |
| 14768 | | |
| 14769 | | > view matrix models #2,1,0,0,-28.694,0,1,0,-27.85,0,0,1,-19.125 |
| 14770 | | |
| 14771 | | > fitmap #2 inMap #4 |
| 14772 | | |
| 14773 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 14774 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 14775 | | correlation = 0.4013, correlation about mean = 0.1603, overlap = 3522 |
| 14776 | | steps = 72, shift = 2.96, angle = 6.4 degrees |
| 14777 | | |
| 14778 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 14779 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 14780 | | Matrix rotation and translation |
| 14781 | | 0.99375857 -0.11155222 -0.00000012 -10.76624969 |
| 14782 | | 0.11155222 0.99375857 -0.00000003 -47.80157480 |
| 14783 | | 0.00000012 0.00000002 1.00000000 -19.30991453 |
| 14784 | | Axis 0.00000023 -0.00000109 1.00000000 |
| 14785 | | Axis point 421.79280241 -120.11266469 0.00000000 |
| 14786 | | Rotation angle (degrees) 6.40480171 |
| 14787 | | Shift along axis -19.30986500 |
| 14788 | | |
| 14789 | | |
| 14790 | | > fitmap #2 inMap #4 |
| 14791 | | |
| 14792 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 14793 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 14794 | | correlation = 0.4013, correlation about mean = 0.1603, overlap = 3522 |
| 14795 | | steps = 24, shift = 0.00028, angle = 7.61e-05 degrees |
| 14796 | | |
| 14797 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 14798 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 14799 | | Matrix rotation and translation |
| 14800 | | 0.99375843 -0.11155353 -0.00000013 -10.76601669 |
| 14801 | | 0.11155353 0.99375843 0.00000005 -47.80180248 |
| 14802 | | 0.00000013 -0.00000006 1.00000000 -19.31018059 |
| 14803 | | Axis -0.00000049 -0.00000115 1.00000000 |
| 14804 | | Axis point 421.78987926 -120.10967791 0.00000000 |
| 14805 | | Rotation angle (degrees) 6.40487769 |
| 14806 | | Shift along axis -19.31012034 |
| 14807 | | |
| 14808 | | |
| 14809 | | > select clear |
| 14810 | | |
| 14811 | | > open |
| 14812 | | > C:/Users/OJS/Desktop/Phenix/220302_Cx43_N55H_CBX/RealSpaceRefine_193/231030_From192-coot-1_real_space_refined_193.pdb |
| 14813 | | |
| 14814 | | Chain information for 231030_From192-coot-1_real_space_refined_193.pdb #5 |
| 14815 | | --- |
| 14816 | | Chain | Description |
| 14817 | | A B C D E F | No description available |
| 14818 | | |
| 14819 | | |
| 14820 | | > color #5 #00aaffff |
| 14821 | | |
| 14822 | | > hide #!5 atoms |
| 14823 | | |
| 14824 | | > show #!5 cartoons |
| 14825 | | |
| 14826 | | > select add #2 |
| 14827 | | |
| 14828 | | 2 models selected |
| 14829 | | |
| 14830 | | > select subtract #2 |
| 14831 | | |
| 14832 | | Nothing selected |
| 14833 | | |
| 14834 | | > hide #!5 models |
| 14835 | | |
| 14836 | | > hide #!4 models |
| 14837 | | |
| 14838 | | > hide #!3 models |
| 14839 | | |
| 14840 | | > hide #!2 models |
| 14841 | | |
| 14842 | | > show #!5 models |
| 14843 | | |
| 14844 | | > select ::name="6OU"::name="CLR"::name="MC3"::name="PTY"::name="Y01" |
| 14845 | | |
| 14846 | | 7602 atoms, 7560 bonds, 162 residues, 3 models selected |
| 14847 | | |
| 14848 | | > show sel atoms |
| 14849 | | |
| 14850 | | > color sel gray |
| 14851 | | |
| 14852 | | > color sel byhetero |
| 14853 | | |
| 14854 | | > select clear |
| 14855 | | |
| 14856 | | > show #!3 models |
| 14857 | | |
| 14858 | | > hide #!3 models |
| 14859 | | |
| 14860 | | > show #!3 models |
| 14861 | | |
| 14862 | | > hide #!3 models |
| 14863 | | |
| 14864 | | > show #!2 models |
| 14865 | | |
| 14866 | | > ui mousemode right "translate selected models" |
| 14867 | | |
| 14868 | | > ui mousemode right zoom |
| 14869 | | |
| 14870 | | > ui mousemode right "translate selected models" |
| 14871 | | |
| 14872 | | > select add #5 |
| 14873 | | |
| 14874 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 14875 | | |
| 14876 | | > view matrix models #5,1,0,0,-26.236,0,1,0,-36.803,0,0,1,-10.901 |
| 14877 | | |
| 14878 | | > fitmap #2 inMap #4 |
| 14879 | | |
| 14880 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 14881 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 14882 | | correlation = 0.4013, correlation about mean = 0.1603, overlap = 3522 |
| 14883 | | steps = 24, shift = 0.000145, angle = 9.39e-05 degrees |
| 14884 | | |
| 14885 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 14886 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 14887 | | Matrix rotation and translation |
| 14888 | | 0.99375824 -0.11155515 0.00000006 -10.76574861 |
| 14889 | | 0.11155515 0.99375824 -0.00000004 -47.80204382 |
| 14890 | | -0.00000006 0.00000005 1.00000000 -19.31031219 |
| 14891 | | Axis 0.00000039 0.00000053 1.00000000 |
| 14892 | | Axis point 421.78566775 -120.10583262 0.00000000 |
| 14893 | | Rotation angle (degrees) 6.40497078 |
| 14894 | | Shift along axis -19.31034172 |
| 14895 | | |
| 14896 | | |
| 14897 | | > fitmap #2 inMap #4 |
| 14898 | | |
| 14899 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 14900 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 14901 | | correlation = 0.4013, correlation about mean = 0.1603, overlap = 3522 |
| 14902 | | steps = 24, shift = 0.000282, angle = 5.93e-05 degrees |
| 14903 | | |
| 14904 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 14905 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 14906 | | Matrix rotation and translation |
| 14907 | | 0.99375836 -0.11155413 0.00000020 -10.76597001 |
| 14908 | | 0.11155413 0.99375836 -0.00000010 -47.80188704 |
| 14909 | | -0.00000019 0.00000012 1.00000000 -19.31058408 |
| 14910 | | Axis 0.00000095 0.00000175 1.00000000 |
| 14911 | | Axis point 421.78787119 -120.10850757 0.00000000 |
| 14912 | | Rotation angle (degrees) 6.40491212 |
| 14913 | | Shift along axis -19.31067794 |
| 14914 | | |
| 14915 | | |
| 14916 | | > fitmap #5 inMap #2 |
| 14917 | | |
| 14918 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 14919 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 14920 | | average map value = 0.06865, steps = 192 |
| 14921 | | shifted from previous position = 3.7 |
| 14922 | | rotated from previous position = 7.95 degrees |
| 14923 | | atoms outside contour = 9100, contour level = 0.1711 |
| 14924 | | |
| 14925 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 14926 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 14927 | | Matrix rotation and translation |
| 14928 | | 0.97728566 0.18392584 0.10528070 -42.27920129 |
| 14929 | | -0.18963597 0.98072944 0.04698892 23.16069635 |
| 14930 | | -0.09460941 -0.06588660 0.99333177 35.01544100 |
| 14931 | | Axis -0.25743751 0.45589346 -0.85199007 |
| 14932 | | Axis point 116.28984958 255.97535920 0.00000000 |
| 14933 | | Rotation angle (degrees) 12.66375093 |
| 14934 | | Shift along axis -8.38974578 |
| 14935 | | |
| 14936 | | |
| 14937 | | > fitmap #5 inMap #2 |
| 14938 | | |
| 14939 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 14940 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 14941 | | average map value = 0.06865, steps = 100 |
| 14942 | | shifted from previous position = 0.0318 |
| 14943 | | rotated from previous position = 0.085 degrees |
| 14944 | | atoms outside contour = 9100, contour level = 0.1711 |
| 14945 | | |
| 14946 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 14947 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 14948 | | Matrix rotation and translation |
| 14949 | | 0.97706316 0.18430794 0.10666852 -42.55053272 |
| 14950 | | -0.19013425 0.98062192 0.04721889 23.21443950 |
| 14951 | | -0.09589867 -0.06641718 0.99317280 35.31492447 |
| 14952 | | Axis -0.25789536 0.45972318 -0.84979091 |
| 14953 | | Axis point 116.12425147 257.02215164 0.00000000 |
| 14954 | | Rotation angle (degrees) 12.72749438 |
| 14955 | | Shift along axis -8.36450073 |
| 14956 | | |
| 14957 | | |
| 14958 | | > ui mousemode right "rotate selected models" |
| 14959 | | |
| 14960 | | > view matrix models |
| 14961 | | > #5,0.98256,0.090989,-0.16215,-12.019,-0.048424,0.96721,0.24931,-62.613,0.17952,-0.23711,0.95475,5.1796 |
| 14962 | | |
| 14963 | | > view matrix models |
| 14964 | | > #5,0.98066,0.0018608,-0.19572,8.8234,0.10106,0.85155,0.51445,-113.5,0.16762,-0.52427,0.83489,75.289 |
| 14965 | | |
| 14966 | | > view matrix models |
| 14967 | | > #5,0.99717,0.0040589,-0.075089,-14.878,0.020228,0.94726,0.31983,-82.737,0.072426,-0.32044,0.9445,38.542 |
| 14968 | | |
| 14969 | | > view matrix models |
| 14970 | | > #5,0.98559,-0.034013,-0.16568,8.8298,0.12321,0.81544,0.56557,-119.91,0.11586,-0.57784,0.80788,97.384 |
| 14971 | | |
| 14972 | | > view matrix models |
| 14973 | | > #5,0.86475,-0.32392,-0.38378,114.25,0.46311,0.80994,0.35989,-140.3,0.19426,-0.48895,0.85041,62.354 |
| 14974 | | |
| 14975 | | > view matrix models |
| 14976 | | > #5,0.88847,-0.44116,-0.12648,85.846,0.45887,0.84945,0.26052,-129.19,-0.007496,-0.28951,0.95715,44.513 |
| 14977 | | |
| 14978 | | > fitmap #5 inMap #2 |
| 14979 | | |
| 14980 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 14981 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 14982 | | average map value = 0.06992, steps = 92 |
| 14983 | | shifted from previous position = 4.84 |
| 14984 | | rotated from previous position = 4.64 degrees |
| 14985 | | atoms outside contour = 9094, contour level = 0.1711 |
| 14986 | | |
| 14987 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 14988 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 14989 | | Matrix rotation and translation |
| 14990 | | 0.91043892 -0.38185848 -0.15901280 104.43746875 |
| 14991 | | 0.41277205 0.86364911 0.28936041 -100.79796552 |
| 14992 | | 0.02683654 -0.32908102 0.94392027 64.13290563 |
| 14993 | | Axis -0.60398373 -0.18150462 0.77605395 |
| 14994 | | Axis point 310.87005563 208.47486879 0.00000000 |
| 14995 | | Rotation angle (degrees) 30.79504738 |
| 14996 | | Shift along axis 4.98735885 |
| 14997 | | |
| 14998 | | |
| 14999 | | > fitmap #5 inMap #2 |
| 15000 | | |
| 15001 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15002 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15003 | | average map value = 0.06991, steps = 44 |
| 15004 | | shifted from previous position = 0.0154 |
| 15005 | | rotated from previous position = 0.0169 degrees |
| 15006 | | atoms outside contour = 9093, contour level = 0.1711 |
| 15007 | | |
| 15008 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15009 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15010 | | Matrix rotation and translation |
| 15011 | | 0.91038022 -0.38191726 -0.15920759 104.50101007 |
| 15012 | | 0.41288607 0.86366680 0.28914486 -100.77220766 |
| 15013 | | 0.02707290 -0.32896636 0.94395349 64.07002651 |
| 15014 | | Axis -0.60365354 -0.18192336 0.77621279 |
| 15015 | | Axis point 310.74431490 208.57871672 0.00000000 |
| 15016 | | Rotation angle (degrees) 30.79548338 |
| 15017 | | Shift along axis 4.98238911 |
| 15018 | | |
| 15019 | | |
| 15020 | | > fitmap #5 inMap #2 |
| 15021 | | |
| 15022 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15023 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15024 | | average map value = 0.06991, steps = 48 |
| 15025 | | shifted from previous position = 0.0138 |
| 15026 | | rotated from previous position = 0.0205 degrees |
| 15027 | | atoms outside contour = 9094, contour level = 0.1711 |
| 15028 | | |
| 15029 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15030 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15031 | | Matrix rotation and translation |
| 15032 | | 0.91042444 -0.38195633 -0.15886064 104.42803069 |
| 15033 | | 0.41280706 0.86372108 0.28909555 -100.76087051 |
| 15034 | | 0.02678941 -0.32877845 0.94402704 64.07763429 |
| 15035 | | Axis -0.60359205 -0.18135881 0.77639270 |
| 15036 | | Axis point 310.70127763 208.42573583 0.00000000 |
| 15037 | | Rotation angle (degrees) 30.78585529 |
| 15038 | | Shift along axis 4.99134999 |
| 15039 | | |
| 15040 | | |
| 15041 | | > view matrix models |
| 15042 | | > #5,0.82287,-0.56573,-0.05328,101.74,0.56421,0.8023,0.19488,-130.01,-0.067504,-0.19042,0.97938,31.417 |
| 15043 | | |
| 15044 | | > ui mousemode right "translate selected models" |
| 15045 | | |
| 15046 | | > view matrix models |
| 15047 | | > #5,0.82287,-0.56573,-0.05328,104.02,0.56421,0.8023,0.19488,-127.97,-0.067504,-0.19042,0.97938,29.813 |
| 15048 | | |
| 15049 | | > fitmap #5 inMap #2 |
| 15050 | | |
| 15051 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15052 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15053 | | average map value = 0.07186, steps = 100 |
| 15054 | | shifted from previous position = 1.03 |
| 15055 | | rotated from previous position = 4.12 degrees |
| 15056 | | atoms outside contour = 9062, contour level = 0.1711 |
| 15057 | | |
| 15058 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15059 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15060 | | Matrix rotation and translation |
| 15061 | | 0.91122002 -0.41001852 -0.03953346 91.92108592 |
| 15062 | | 0.40836710 0.88661249 0.21715112 -90.22302917 |
| 15063 | | -0.05398512 -0.21401661 0.97533712 51.13334573 |
| 15064 | | Axis -0.46606070 0.01562119 0.88461484 |
| 15065 | | Axis point 267.45257587 167.39449790 0.00000000 |
| 15066 | | Rotation angle (degrees) 27.55281574 |
| 15067 | | Shift along axis 0.98311953 |
| 15068 | | |
| 15069 | | |
| 15070 | | > fitmap #5 inMap #2 |
| 15071 | | |
| 15072 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15073 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15074 | | average map value = 0.07186, steps = 60 |
| 15075 | | shifted from previous position = 0.00168 |
| 15076 | | rotated from previous position = 0.00564 degrees |
| 15077 | | atoms outside contour = 9064, contour level = 0.1711 |
| 15078 | | |
| 15079 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15080 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15081 | | Matrix rotation and translation |
| 15082 | | 0.91124989 -0.40995505 -0.03950297 91.90073461 |
| 15083 | | 0.40829533 0.88663002 0.21721451 -90.22614441 |
| 15084 | | -0.05402367 -0.21406557 0.97532424 51.15104204 |
| 15085 | | Axis -0.46621549 0.01569693 0.88453192 |
| 15086 | | Axis point 267.49643208 167.38090021 0.00000000 |
| 15087 | | Rotation angle (degrees) 27.55067747 |
| 15088 | | Shift along axis 0.98291025 |
| 15089 | | |
| 15090 | | |
| 15091 | | > ui mousemode right "rotate selected models" |
| 15092 | | |
| 15093 | | > view matrix models |
| 15094 | | > #5,0.84117,-0.53381,0.086452,72.721,0.51066,0.83672,0.1978,-125.65,-0.17793,-0.12224,0.97642,36.978 |
| 15095 | | |
| 15096 | | > view matrix models |
| 15097 | | > #5,0.81779,-0.52679,0.23174,50.63,0.55127,0.83267,-0.05256,-88.971,-0.16527,0.17073,0.97136,-12.892 |
| 15098 | | |
| 15099 | | > view matrix models |
| 15100 | | > #5,0.94062,-0.26345,0.21406,-10.455,0.29038,0.95108,-0.10547,-56.287,-0.1758,0.16137,0.97111,-9.5474 |
| 15101 | | |
| 15102 | | > view matrix models |
| 15103 | | > #5,0.94828,-0.30789,0.07727,19.006,0.25801,0.88937,0.37743,-123.12,-0.18493,-0.33798,0.92281,83.107 |
| 15104 | | |
| 15105 | | > view matrix models |
| 15106 | | > #5,0.93193,-0.32857,0.15348,12.141,0.28053,0.92135,0.2691,-113.67,-0.22982,-0.20772,0.95081,64.157 |
| 15107 | | |
| 15108 | | > view matrix models |
| 15109 | | > #5,0.91272,-0.33983,0.22685,4.6717,0.29771,0.93338,0.20043,-106.79,-0.27985,-0.1154,0.95308,56.747 |
| 15110 | | |
| 15111 | | > view matrix models |
| 15112 | | > #5,0.94739,-0.18769,0.25928,-31.877,0.14703,0.9747,0.16832,-83.159,-0.28432,-0.12134,0.95102,58.827 |
| 15113 | | |
| 15114 | | > view matrix models |
| 15115 | | > #5,0.96777,-0.176,0.18014,-23.687,0.12951,0.96125,0.24338,-90.831,-0.21599,-0.2122,0.95306,62.22 |
| 15116 | | |
| 15117 | | > fitmap #5 inMap #2 |
| 15118 | | |
| 15119 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15120 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15121 | | average map value = 0.2284, steps = 120 |
| 15122 | | shifted from previous position = 5.42 |
| 15123 | | rotated from previous position = 17.8 degrees |
| 15124 | | atoms outside contour = 5356, contour level = 0.1711 |
| 15125 | | |
| 15126 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15127 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15128 | | Matrix rotation and translation |
| 15129 | | 0.99999996 -0.00021060 -0.00018067 0.07478475 |
| 15130 | | 0.00021062 0.99999997 0.00012622 -0.06338469 |
| 15131 | | 0.00018064 -0.00012626 0.99999998 -0.00121625 |
| 15132 | | Axis -0.41411606 -0.59260886 0.69088540 |
| 15133 | | Axis point 284.80516726 366.36081299 0.00000000 |
| 15134 | | Rotation angle (degrees) 0.01746629 |
| 15135 | | Shift along axis 0.00575248 |
| 15136 | | |
| 15137 | | |
| 15138 | | > fitmap #5 inMap #2 |
| 15139 | | |
| 15140 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15141 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15142 | | average map value = 0.2284, steps = 28 |
| 15143 | | shifted from previous position = 0.0209 |
| 15144 | | rotated from previous position = 0.0293 degrees |
| 15145 | | atoms outside contour = 5353, contour level = 0.1711 |
| 15146 | | |
| 15147 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15148 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15149 | | Matrix rotation and translation |
| 15150 | | 0.99999997 -0.00020933 0.00015446 0.00298312 |
| 15151 | | 0.00020937 0.99999994 -0.00025947 0.01751335 |
| 15152 | | -0.00015440 0.00025951 0.99999995 -0.00959806 |
| 15153 | | Axis 0.70620700 0.42029007 0.56976128 |
| 15154 | | Axis point 0.00000000 45.77629868 61.00889927 |
| 15155 | | Rotation angle (degrees) 0.02105279 |
| 15156 | | Shift along axis 0.00399879 |
| 15157 | | |
| 15158 | | |
| 15159 | | > fitmap #5 inMap #2 |
| 15160 | | |
| 15161 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15162 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15163 | | average map value = 0.2284, steps = 28 |
| 15164 | | shifted from previous position = 0.0171 |
| 15165 | | rotated from previous position = 0.0293 degrees |
| 15166 | | atoms outside contour = 5355, contour level = 0.1711 |
| 15167 | | |
| 15168 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15169 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15170 | | Matrix rotation and translation |
| 15171 | | 0.99999997 -0.00020967 -0.00010238 0.05609251 |
| 15172 | | 0.00020969 0.99999996 0.00018212 -0.07207096 |
| 15173 | | 0.00010235 -0.00018214 0.99999998 0.02109112 |
| 15174 | | Axis -0.61530483 -0.34583612 0.70837656 |
| 15175 | | Axis point 334.93688900 283.19285435 0.00000000 |
| 15176 | | Rotation angle (degrees) 0.01695925 |
| 15177 | | Shift along axis 0.00535120 |
| 15178 | | |
| 15179 | | |
| 15180 | | > select clear |
| 15181 | | |
| 15182 | | > hide #!5 models |
| 15183 | | |
| 15184 | | > hide #!2 models |
| 15185 | | |
| 15186 | | > show #!5 models |
| 15187 | | |
| 15188 | | > show #!8 models |
| 15189 | | |
| 15190 | | > hide #!8 models |
| 15191 | | |
| 15192 | | > show #!8 models |
| 15193 | | |
| 15194 | | > hide #!8 models |
| 15195 | | |
| 15196 | | > show #!8 models |
| 15197 | | |
| 15198 | | > show #!4 models |
| 15199 | | |
| 15200 | | > hide #!8 models |
| 15201 | | |
| 15202 | | > hide #!4 models |
| 15203 | | |
| 15204 | | > hide #!5 models |
| 15205 | | |
| 15206 | | > show #!4 models |
| 15207 | | |
| 15208 | | > show #!2 models |
| 15209 | | |
| 15210 | | > hide #!4 models |
| 15211 | | |
| 15212 | | > show #!4 models |
| 15213 | | |
| 15214 | | > fitmap #2 inMap #4 |
| 15215 | | |
| 15216 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 15217 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 15218 | | correlation = 0.4013, correlation about mean = 0.1603, overlap = 3522 |
| 15219 | | steps = 24, shift = 0.000325, angle = 7.49e-05 degrees |
| 15220 | | |
| 15221 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 15222 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15223 | | Matrix rotation and translation |
| 15224 | | 0.99375821 -0.11155543 0.00000016 -10.76569508 |
| 15225 | | 0.11155543 0.99375821 -0.00000012 -47.80209716 |
| 15226 | | -0.00000014 0.00000014 1.00000000 -19.31091762 |
| 15227 | | Axis 0.00000115 0.00000134 1.00000000 |
| 15228 | | Axis point 421.78495527 -120.10499944 0.00000000 |
| 15229 | | Rotation angle (degrees) 6.40498698 |
| 15230 | | Shift along axis -19.31099406 |
| 15231 | | |
| 15232 | | |
| 15233 | | > fitmap #2 inMap #4 |
| 15234 | | |
| 15235 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 15236 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 15237 | | correlation = 0.4013, correlation about mean = 0.1603, overlap = 3522 |
| 15238 | | steps = 24, shift = 0.000314, angle = 0.000186 degrees |
| 15239 | | |
| 15240 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 15241 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15242 | | Matrix rotation and translation |
| 15243 | | 0.99375857 -0.11155223 0.00000028 -10.76633014 |
| 15244 | | 0.11155223 0.99375857 -0.00000052 -47.80154827 |
| 15245 | | -0.00000022 0.00000055 1.00000000 -19.31128635 |
| 15246 | | Axis 0.00000476 0.00000220 1.00000000 |
| 15247 | | Axis point 421.79193136 -120.11254061 0.00000000 |
| 15248 | | Rotation angle (degrees) 6.40480277 |
| 15249 | | Shift along axis -19.31144274 |
| 15250 | | |
| 15251 | | |
| 15252 | | > ui mousemode right "translate selected models" |
| 15253 | | |
| 15254 | | > select add #2 |
| 15255 | | |
| 15256 | | 2 models selected |
| 15257 | | |
| 15258 | | > view matrix models |
| 15259 | | > #2,0.99376,-0.11155,2.7502e-07,-11.795,0.11155,0.99376,-5.1762e-07,-47.624,-2.1556e-07,5.4507e-07,1,-24.513 |
| 15260 | | |
| 15261 | | > fitmap #2 inMap #4 |
| 15262 | | |
| 15263 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 15264 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 15265 | | correlation = 0.7977, correlation about mean = 0.4343, overlap = 9400 |
| 15266 | | steps = 52, shift = 1.05, angle = 2.41 degrees |
| 15267 | | |
| 15268 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 15269 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15270 | | Matrix rotation and translation |
| 15271 | | 0.98818765 -0.15324874 -0.00001319 -2.91633276 |
| 15272 | | 0.15324874 0.98818765 0.00003953 -53.80778401 |
| 15273 | | 0.00000698 -0.00004108 1.00000000 -24.56492507 |
| 15274 | | Axis -0.00026301 -0.00006579 0.99999996 |
| 15275 | | Axis point 347.58938165 -45.86426754 0.00000000 |
| 15276 | | Rotation angle (degrees) 8.81524335 |
| 15277 | | Shift along axis -24.56061713 |
| 15278 | | |
| 15279 | | |
| 15280 | | > fitmap #2 inMap #4 |
| 15281 | | |
| 15282 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 15283 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 15284 | | correlation = 0.7978, correlation about mean = 0.4346, overlap = 9399 |
| 15285 | | steps = 28, shift = 0.0128, angle = 0.0117 degrees |
| 15286 | | |
| 15287 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 15288 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15289 | | Matrix rotation and translation |
| 15290 | | 0.98820444 -0.15314043 0.00002484 -2.94424105 |
| 15291 | | 0.15314043 0.98820442 0.00020825 -53.83277594 |
| 15292 | | -0.00005644 -0.00020199 0.99999998 -24.52054178 |
| 15293 | | Axis -0.00133940 0.00026538 0.99999907 |
| 15294 | | Axis point 347.92153726 -46.23879060 0.00000000 |
| 15295 | | Rotation angle (degrees) 8.80897147 |
| 15296 | | Shift along axis -24.53086153 |
| 15297 | | |
| 15298 | | |
| 15299 | | > fitmap #2 inMap #4 |
| 15300 | | |
| 15301 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 15302 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 15303 | | correlation = 0.7977, correlation about mean = 0.4344, overlap = 9399 |
| 15304 | | steps = 28, shift = 0.0249, angle = 0.0175 degrees |
| 15305 | | |
| 15306 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 15307 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15308 | | Matrix rotation and translation |
| 15309 | | 0.98818765 -0.15324869 -0.00001401 -2.91717649 |
| 15310 | | 0.15324869 0.98818765 -0.00007448 -53.77405078 |
| 15311 | | 0.00002526 0.00007146 1.00000000 -24.58443557 |
| 15312 | | Axis 0.00047616 -0.00012810 0.99999988 |
| 15313 | | Axis point 347.38927773 -45.73582655 0.00000000 |
| 15314 | | Rotation angle (degrees) 8.81524127 |
| 15315 | | Shift along axis -24.57893292 |
| 15316 | | |
| 15317 | | |
| 15318 | | > fitmap #2 inMap #4 |
| 15319 | | |
| 15320 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 15321 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 15322 | | correlation = 0.7977, correlation about mean = 0.4342, overlap = 9400 |
| 15323 | | steps = 28, shift = 0.0238, angle = 0.0117 degrees |
| 15324 | | |
| 15325 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 15326 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15327 | | Matrix rotation and translation |
| 15328 | | 0.98819279 -0.15321558 0.00001681 -2.92875908 |
| 15329 | | 0.15321558 0.98819278 0.00012401 -53.82757865 |
| 15330 | | -0.00003561 -0.00011997 0.99999999 -24.54710902 |
| 15331 | | Axis -0.00079623 0.00017109 0.99999967 |
| 15332 | | Axis point 347.74376502 -46.04097101 0.00000000 |
| 15333 | | Rotation angle (degrees) 8.81332330 |
| 15334 | | Shift along axis -24.55397823 |
| 15335 | | |
| 15336 | | |
| 15337 | | > fitmap #2 inMap #4 |
| 15338 | | |
| 15339 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 15340 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 15341 | | correlation = 0.7977, correlation about mean = 0.4343, overlap = 9400 |
| 15342 | | steps = 28, shift = 0.0192, angle = 0.0169 degrees |
| 15343 | | |
| 15344 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 15345 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15346 | | Matrix rotation and translation |
| 15347 | | 0.98817382 -0.15333789 -0.00003155 -2.89687419 |
| 15348 | | 0.15333789 0.98817381 -0.00014023 -53.77928061 |
| 15349 | | 0.00005268 0.00013373 0.99999999 -24.60237157 |
| 15350 | | Axis 0.00089333 -0.00027464 0.99999956 |
| 15351 | | Axis point 347.25648168 -45.53099217 0.00000000 |
| 15352 | | Rotation angle (degrees) 8.82041603 |
| 15353 | | Shift along axis -24.59017848 |
| 15354 | | |
| 15355 | | |
| 15356 | | > fitmap #2 inMap #4 |
| 15357 | | |
| 15358 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 15359 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 15360 | | correlation = 0.7977, correlation about mean = 0.4343, overlap = 9400 |
| 15361 | | steps = 28, shift = 0.0169, angle = 0.0176 degrees |
| 15362 | | |
| 15363 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 15364 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15365 | | Matrix rotation and translation |
| 15366 | | 0.98819147 -0.15322408 0.00003637 -2.93189198 |
| 15367 | | 0.15322408 0.98819146 0.00013666 -53.82867247 |
| 15368 | | -0.00005688 -0.00012947 0.99999999 -24.54071807 |
| 15369 | | Axis -0.00086845 0.00030429 0.99999958 |
| 15370 | | Axis point 347.70758821 -46.07064477 0.00000000 |
| 15371 | | Rotation angle (degrees) 8.81381691 |
| 15372 | | Shift along axis -24.55454091 |
| 15373 | | |
| 15374 | | |
| 15375 | | > fitmap #2 inMap #4 |
| 15376 | | |
| 15377 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 15378 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 15379 | | correlation = 0.7977, correlation about mean = 0.4343, overlap = 9400 |
| 15380 | | steps = 28, shift = 0.0188, angle = 0.0188 degrees |
| 15381 | | |
| 15382 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 15383 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15384 | | Matrix rotation and translation |
| 15385 | | 0.98818347 -0.15327568 -0.00005338 -2.90418622 |
| 15386 | | 0.15327567 0.98818345 -0.00017497 -53.76265079 |
| 15387 | | 0.00007957 0.00016472 0.99999998 -24.61228059 |
| 15388 | | Axis 0.00110808 -0.00043368 0.99999929 |
| 15389 | | Axis point 347.31622728 -45.54545153 0.00000000 |
| 15390 | | Rotation angle (degrees) 8.81681081 |
| 15391 | | Shift along axis -24.59216570 |
| 15392 | | |
| 15393 | | |
| 15394 | | > fitmap #2 inMap #4 |
| 15395 | | |
| 15396 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 15397 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 59871 points |
| 15398 | | correlation = 0.7977, correlation about mean = 0.4343, overlap = 9400 |
| 15399 | | steps = 28, shift = 0.0181, angle = 0.0203 degrees |
| 15400 | | |
| 15401 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 15402 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15403 | | Matrix rotation and translation |
| 15404 | | 0.98818815 -0.15324549 0.00005404 -2.93138323 |
| 15405 | | 0.15324548 0.98818814 0.00016195 -53.83536495 |
| 15406 | | -0.00007822 -0.00015176 0.99999999 -24.53354912 |
| 15407 | | Axis -0.00102356 0.00043154 0.99999938 |
| 15408 | | Axis point 347.67973248 -46.09112360 0.00000000 |
| 15409 | | Rotation angle (degrees) 8.81505972 |
| 15410 | | Shift along axis -24.55376555 |
| 15411 | | |
| 15412 | | |
| 15413 | | > hide #!4 models |
| 15414 | | |
| 15415 | | > show #!4 models |
| 15416 | | |
| 15417 | | > hide #!4 models |
| 15418 | | |
| 15419 | | > show #!4 models |
| 15420 | | |
| 15421 | | > hide #!4 models |
| 15422 | | |
| 15423 | | > show #!4 models |
| 15424 | | |
| 15425 | | > show #!5 models |
| 15426 | | |
| 15427 | | > hide #!4 models |
| 15428 | | |
| 15429 | | > select add #5 |
| 15430 | | |
| 15431 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 4 models selected |
| 15432 | | |
| 15433 | | > select subtract #2 |
| 15434 | | |
| 15435 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 15436 | | |
| 15437 | | > view matrix models |
| 15438 | | > #5,0.99373,-0.11176,-0.00012186,-11.019,0.11176,0.99373,0.00016946,-47.643,0.00010216,-0.00018202,1,-24.338 |
| 15439 | | |
| 15440 | | > fitmap #5 inMap #2 |
| 15441 | | |
| 15442 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15443 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15444 | | average map value = 0.2284, steps = 60 |
| 15445 | | shifted from previous position = 0.452 |
| 15446 | | rotated from previous position = 2.41 degrees |
| 15447 | | atoms outside contour = 5356, contour level = 0.1711 |
| 15448 | | |
| 15449 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15450 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15451 | | Matrix rotation and translation |
| 15452 | | 0.99999996 -0.00021074 -0.00016970 0.07238469 |
| 15453 | | 0.00021077 0.99999996 0.00016371 -0.07138205 |
| 15454 | | 0.00016966 -0.00016374 0.99999997 0.00694157 |
| 15455 | | Axis -0.51770589 -0.53653725 0.66641458 |
| 15456 | | Axis point 324.86323121 356.81695742 0.00000000 |
| 15457 | | Rotation angle (degrees) 0.01811964 |
| 15458 | | Shift along axis 0.00545111 |
| 15459 | | |
| 15460 | | |
| 15461 | | > fitmap #5 inMap #2 |
| 15462 | | |
| 15463 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15464 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15465 | | average map value = 0.2284, steps = 28 |
| 15466 | | shifted from previous position = 0.0211 |
| 15467 | | rotated from previous position = 0.0294 degrees |
| 15468 | | atoms outside contour = 5354, contour level = 0.1711 |
| 15469 | | |
| 15470 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15471 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15472 | | Matrix rotation and translation |
| 15473 | | 0.99999997 -0.00020951 0.00011873 0.01027086 |
| 15474 | | 0.00020954 0.99999994 -0.00026022 0.01778974 |
| 15475 | | -0.00011868 0.00026024 0.99999996 -0.01565642 |
| 15476 | | Axis 0.73395412 0.33479756 0.59095004 |
| 15477 | | Axis point 0.00000000 69.80422519 62.89242260 |
| 15478 | | Rotation angle (degrees) 0.02031458 |
| 15479 | | Shift along axis 0.00424214 |
| 15480 | | |
| 15481 | | |
| 15482 | | > fitmap #5 inMap #2 |
| 15483 | | |
| 15484 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15485 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15486 | | average map value = 0.2284, steps = 28 |
| 15487 | | shifted from previous position = 0.0163 |
| 15488 | | rotated from previous position = 0.0283 degrees |
| 15489 | | atoms outside contour = 5354, contour level = 0.1711 |
| 15490 | | |
| 15491 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15492 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15493 | | Matrix rotation and translation |
| 15494 | | 0.99999998 -0.00021033 -0.00007050 0.04966735 |
| 15495 | | 0.00021034 0.99999996 0.00019580 -0.07470012 |
| 15496 | | 0.00007046 -0.00019582 0.99999998 0.02866905 |
| 15497 | | Axis -0.66177070 -0.23819746 0.71085970 |
| 15498 | | Axis point 349.17968536 252.79222498 0.00000000 |
| 15499 | | Rotation angle (degrees) 0.01695312 |
| 15500 | | Shift along axis 0.00530465 |
| 15501 | | |
| 15502 | | |
| 15503 | | > fitmap #5 inMap #2 |
| 15504 | | |
| 15505 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15506 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15507 | | average map value = 0.2284, steps = 28 |
| 15508 | | shifted from previous position = 0.0154 |
| 15509 | | rotated from previous position = 0.0276 degrees |
| 15510 | | atoms outside contour = 5357, contour level = 0.1711 |
| 15511 | | |
| 15512 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15513 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15514 | | Matrix rotation and translation |
| 15515 | | 0.99999998 -0.00020991 0.00003113 0.02842084 |
| 15516 | | 0.00020992 0.99999994 -0.00027567 0.02057250 |
| 15517 | | -0.00003107 0.00027567 0.99999996 -0.03276678 |
| 15518 | | Axis 0.79241126 0.08939270 0.60340148 |
| 15519 | | Axis point 0.00000000 128.91410776 73.11186893 |
| 15520 | | Rotation angle (degrees) 0.01993256 |
| 15521 | | Shift along axis 0.00458850 |
| 15522 | | |
| 15523 | | |
| 15524 | | > fitmap #5 inMap #2 |
| 15525 | | |
| 15526 | | Fit molecule 231030_From192-coot-1_real_space_refined_193.pdb (#5) to map |
| 15527 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 15528 | | average map value = 0.2284, steps = 28 |
| 15529 | | shifted from previous position = 0.015 |
| 15530 | | rotated from previous position = 0.0273 degrees |
| 15531 | | atoms outside contour = 5355, contour level = 0.1711 |
| 15532 | | |
| 15533 | | Position of 231030_From192-coot-1_real_space_refined_193.pdb (#5) relative to |
| 15534 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 15535 | | Matrix rotation and translation |
| 15536 | | 0.99999998 -0.00021041 -0.00000490 0.03644027 |
| 15537 | | 0.00021041 0.99999996 0.00019976 -0.07532447 |
| 15538 | | 0.00000485 -0.00019976 0.99999998 0.04018941 |
| 15539 | | Axis -0.68841918 -0.01680260 0.72511841 |
| 15540 | | Axis point 357.59543022 190.55764034 0.00000000 |
| 15541 | | Rotation angle (degrees) 0.01662598 |
| 15542 | | Shift along axis 0.00532155 |
| 15543 | | |
| 15544 | | |
| 15545 | | > select clear |
| 15546 | | |
| 15547 | | > show #!4 models |
| 15548 | | |
| 15549 | | > hide #!4 models |
| 15550 | | |
| 15551 | | > show #!4 models |
| 15552 | | |
| 15553 | | > hide #!4 models |
| 15554 | | |
| 15555 | | > show #!1 models |
| 15556 | | |
| 15557 | | > hide #!1 models |
| 15558 | | |
| 15559 | | > show #!1 models |
| 15560 | | |
| 15561 | | > hide #!1 models |
| 15562 | | |
| 15563 | | > fitmap #1 inMap #4 |
| 15564 | | |
| 15565 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 15566 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 15567 | | correlation = 0.8992, correlation about mean = 0.7269, overlap = 1.915e+04 |
| 15568 | | steps = 40, shift = 0.0125, angle = 0.0131 degrees |
| 15569 | | |
| 15570 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 15571 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15572 | | Matrix rotation and translation |
| 15573 | | -0.99998895 0.00470055 -0.00013319 304.49497925 |
| 15574 | | 0.00470054 0.99998895 0.00005329 -34.72075898 |
| 15575 | | 0.00013343 0.00005267 -0.99999999 314.55266232 |
| 15576 | | Axis -0.00234941 -0.99999724 -0.00002632 |
| 15577 | | Axis point 152.27779302 0.00000000 157.28693878 |
| 15578 | | Rotation angle (degrees) 179.99236191 |
| 15579 | | Shift along axis 33.99700250 |
| 15580 | | |
| 15581 | | |
| 15582 | | > fitmap #1 inMap #4 |
| 15583 | | |
| 15584 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 15585 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 15586 | | correlation = 0.8993, correlation about mean = 0.7271, overlap = 1.912e+04 |
| 15587 | | steps = 40, shift = 0.0076, angle = 0.00897 degrees |
| 15588 | | |
| 15589 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 15590 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15591 | | Matrix rotation and translation |
| 15592 | | -0.99998841 0.00481501 -0.00007573 304.46888613 |
| 15593 | | 0.00481501 0.99998841 -0.00003675 -34.73167129 |
| 15594 | | 0.00007555 -0.00003712 -1.00000000 314.57608646 |
| 15595 | | Axis -0.00240597 -0.99999711 0.00001877 |
| 15596 | | Axis point 152.27027635 0.00000000 157.29347626 |
| 15597 | | Rotation angle (degrees) 179.99566621 |
| 15598 | | Shift along axis 34.00493175 |
| 15599 | | |
| 15600 | | |
| 15601 | | > fitmap #1 inMap #4 |
| 15602 | | |
| 15603 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 15604 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 15605 | | correlation = 0.8993, correlation about mean = 0.7271, overlap = 1.913e+04 |
| 15606 | | steps = 40, shift = 0.0104, angle = 0.0115 degrees |
| 15607 | | |
| 15608 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 15609 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15610 | | Matrix rotation and translation |
| 15611 | | -0.99998875 0.00474356 0.00008163 304.46294376 |
| 15612 | | 0.00474357 0.99998875 0.00006541 -34.73061521 |
| 15613 | | -0.00008132 0.00006580 -1.00000000 314.58474910 |
| 15614 | | Axis 0.00237322 0.99999718 0.00003308 |
| 15615 | | Axis point 152.27909143 0.00000000 157.28674586 |
| 15616 | | Rotation angle (degrees) 179.99533181 |
| 15617 | | Shift along axis -33.99755239 |
| 15618 | | |
| 15619 | | |
| 15620 | | > show #!1 models |
| 15621 | | |
| 15622 | | > hide #!1 models |
| 15623 | | |
| 15624 | | > show #!1 models |
| 15625 | | |
| 15626 | | > fitmap #1 inMap #4 |
| 15627 | | |
| 15628 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 15629 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 15630 | | correlation = 0.8992, correlation about mean = 0.727, overlap = 1.915e+04 |
| 15631 | | steps = 28, shift = 0.00769, angle = 0.0114 degrees |
| 15632 | | |
| 15633 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 15634 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15635 | | Matrix rotation and translation |
| 15636 | | -0.99998940 0.00460468 0.00001870 304.49407752 |
| 15637 | | 0.00460468 0.99998938 0.00019319 -34.72168970 |
| 15638 | | -0.00001781 0.00019327 -0.99999998 314.55177304 |
| 15639 | | Axis 0.00230873 0.99999733 0.00009787 |
| 15640 | | Axis point 152.28855580 0.00000000 157.27619573 |
| 15641 | | Rotation angle (degrees) 179.99895414 |
| 15642 | | Shift along axis -33.98781751 |
| 15643 | | |
| 15644 | | |
| 15645 | | > fitmap #1 inMap #4 |
| 15646 | | |
| 15647 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 15648 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 15649 | | correlation = 0.8992, correlation about mean = 0.727, overlap = 1.914e+04 |
| 15650 | | steps = 40, shift = 0.0185, angle = 0.0142 degrees |
| 15651 | | |
| 15652 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 15653 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15654 | | Matrix rotation and translation |
| 15655 | | -0.99998888 0.00471655 0.00001423 304.47872034 |
| 15656 | | 0.00471655 0.99998888 -0.00002802 -34.72149125 |
| 15657 | | -0.00001436 -0.00002795 -1.00000000 314.59040507 |
| 15658 | | Axis 0.00236643 0.99999720 -0.00001239 |
| 15659 | | Axis point 152.28156737 0.00000000 157.29389922 |
| 15660 | | Rotation angle (degrees) 179.99918108 |
| 15661 | | Shift along axis -34.00476345 |
| 15662 | | |
| 15663 | | |
| 15664 | | > fitmap #1 inMap #4 |
| 15665 | | |
| 15666 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 15667 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 15668 | | correlation = 0.8993, correlation about mean = 0.7271, overlap = 1.913e+04 |
| 15669 | | steps = 40, shift = 0.00573, angle = 0.00724 degrees |
| 15670 | | |
| 15671 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 15672 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15673 | | Matrix rotation and translation |
| 15674 | | -0.99998841 0.00481459 -0.00003161 304.46591032 |
| 15675 | | 0.00481459 0.99998841 -0.00009315 -34.72283856 |
| 15676 | | 0.00003116 -0.00009330 -1.00000000 314.59322984 |
| 15677 | | Axis -0.00240359 -0.99999711 0.00004734 |
| 15678 | | Axis point 152.27221686 0.00000000 157.29818237 |
| 15679 | | Rotation angle (degrees) 179.99820189 |
| 15680 | | Shift along axis 34.00581997 |
| 15681 | | |
| 15682 | | |
| 15683 | | > select clear |
| 15684 | | |
| 15685 | | > hide #!1 models |
| 15686 | | |
| 15687 | | > hide #!2 models |
| 15688 | | |
| 15689 | | > show #!8 models |
| 15690 | | |
| 15691 | | > morph #5,8 |
| 15692 | | |
| 15693 | | Computed 51 frame morph #6 |
| 15694 | | |
| 15695 | | > coordset #6 1,51 |
| 15696 | | |
| 15697 | | > close #6 |
| 15698 | | |
| 15699 | | > show #!5 models |
| 15700 | | |
| 15701 | | > show #!8 models |
| 15702 | | |
| 15703 | | > hide #!8 models |
| 15704 | | |
| 15705 | | > hide #!5 models |
| 15706 | | |
| 15707 | | > show #!4 models |
| 15708 | | |
| 15709 | | > show #!2 models |
| 15710 | | |
| 15711 | | > hide #!2 models |
| 15712 | | |
| 15713 | | > show #!2 models |
| 15714 | | |
| 15715 | | > open C:/Users/OJS/Downloads/cryosparc_P76_J135_008_volume_map_sharp.mrc |
| 15716 | | |
| 15717 | | Opened cryosparc_P76_J135_008_volume_map_sharp.mrc as #6, grid size |
| 15718 | | 400,400,400, pixel 0.848, shown at level 0.0461, step 2, values float32 |
| 15719 | | |
| 15720 | | > volume #3 level 0.1022 |
| 15721 | | |
| 15722 | | > volume #6 step 1 |
| 15723 | | |
| 15724 | | > volume #6 level 0.07767 |
| 15725 | | |
| 15726 | | > ui mousemode right "translate selected models" |
| 15727 | | |
| 15728 | | > select add #6 |
| 15729 | | |
| 15730 | | 2 models selected |
| 15731 | | |
| 15732 | | > view matrix models #6,1,0,0,-39.453,0,1,0,-27.667,0,0,1,-33.689 |
| 15733 | | |
| 15734 | | > ui mousemode right "rotate selected models" |
| 15735 | | |
| 15736 | | > view matrix models |
| 15737 | | > #6,0.99164,0.1112,0.0654,-68.169,-0.097986,0.97899,-0.1788,23.338,-0.083908,0.1709,0.98171,-45.29 |
| 15738 | | |
| 15739 | | > view matrix models |
| 15740 | | > #6,0.94968,0.11921,0.28966,-101.07,-0.064557,0.97939,-0.1914,19.773,-0.30651,0.16307,0.9378,1.3609 |
| 15741 | | |
| 15742 | | > view matrix models |
| 15743 | | > #6,0.85961,0.16001,0.48525,-126.43,-0.041873,0.96857,-0.2452,27.036,-0.50924,0.19046,0.83929,48.081 |
| 15744 | | |
| 15745 | | > view matrix models |
| 15746 | | > #6,0.80071,0.36496,0.47504,-149.44,-0.30761,0.93095,-0.19673,70.128,-0.51404,0.011397,0.85769,76.091 |
| 15747 | | |
| 15748 | | > view matrix models |
| 15749 | | > #6,0.91093,0.34002,0.23364,-122.29,-0.32518,0.94029,-0.10056,54.946,-0.25388,0.015625,0.96711,12.389 |
| 15750 | | |
| 15751 | | > volume #6 level 0.09737 |
| 15752 | | |
| 15753 | | > fitmap #1 inMap #4 |
| 15754 | | |
| 15755 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 15756 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 15757 | | correlation = 0.8992, correlation about mean = 0.727, overlap = 1.914e+04 |
| 15758 | | steps = 40, shift = 0.000567, angle = 0.00546 degrees |
| 15759 | | |
| 15760 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 15761 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15762 | | Matrix rotation and translation |
| 15763 | | -0.99998885 0.00472315 -0.00002432 304.48029040 |
| 15764 | | 0.00472315 0.99998885 -0.00006736 -34.71120322 |
| 15765 | | 0.00002400 -0.00006748 -1.00000000 314.59022304 |
| 15766 | | Axis -0.00235676 -0.99999722 0.00003466 |
| 15767 | | Axis point 152.27914824 0.00000000 157.29634953 |
| 15768 | | Rotation angle (degrees) 179.99861576 |
| 15769 | | Shift along axis 34.00442230 |
| 15770 | | |
| 15771 | | |
| 15772 | | > fitmap #1 inMap #4 |
| 15773 | | |
| 15774 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 15775 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 15776 | | correlation = 0.8992, correlation about mean = 0.7271, overlap = 1.914e+04 |
| 15777 | | steps = 40, shift = 0.00339, angle = 0.00484 degrees |
| 15778 | | |
| 15779 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 15780 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15781 | | Matrix rotation and translation |
| 15782 | | -0.99998883 0.00472713 0.00005684 304.46930163 |
| 15783 | | 0.00472712 0.99998883 -0.00009019 -34.70775778 |
| 15784 | | -0.00005726 -0.00008992 -1.00000000 314.60742556 |
| 15785 | | Axis 0.00236561 0.99999720 -0.00004463 |
| 15786 | | Axis point 152.28019057 0.00000000 157.29859461 |
| 15787 | | Rotation angle (degrees) 179.99673123 |
| 15788 | | Shift along axis -34.00144521 |
| 15789 | | |
| 15790 | | |
| 15791 | | > fitmap #1 inMap #4 |
| 15792 | | |
| 15793 | | Fit map WT_PIP2_P68_J150_009_volume_map_sharp.mrc in map |
| 15794 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 103096 points |
| 15795 | | correlation = 0.8992, correlation about mean = 0.727, overlap = 1.914e+04 |
| 15796 | | steps = 28, shift = 0.0114, angle = 0.0116 degrees |
| 15797 | | |
| 15798 | | Position of WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) relative to |
| 15799 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15800 | | Matrix rotation and translation |
| 15801 | | -0.99998928 0.00462477 0.00023004 304.46844668 |
| 15802 | | 0.00462475 0.99998930 -0.00010477 -34.69040278 |
| 15803 | | -0.00023052 -0.00010370 -0.99999997 314.63689599 |
| 15804 | | Axis 0.00231289 0.99999732 -0.00005202 |
| 15805 | | Axis point 152.29245488 0.00000000 157.30001267 |
| 15806 | | Rotation angle (degrees) 179.98680574 |
| 15807 | | Shift along axis -34.00247377 |
| 15808 | | |
| 15809 | | |
| 15810 | | > fitmap #6 inMap #4 |
| 15811 | | |
| 15812 | | Fit map cryosparc_P76_J135_008_volume_map_sharp.mrc in map |
| 15813 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 91413 points |
| 15814 | | correlation = 0.4511, correlation about mean = 0.094, overlap = 2583 |
| 15815 | | steps = 152, shift = 6.83, angle = 15.3 degrees |
| 15816 | | |
| 15817 | | Position of cryosparc_P76_J135_008_volume_map_sharp.mrc (#6) relative to |
| 15818 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15819 | | Matrix rotation and translation |
| 15820 | | 0.96270926 0.27053813 -0.00011286 -73.45605821 |
| 15821 | | -0.27053813 0.96270926 -0.00002954 18.28747820 |
| 15822 | | 0.00010066 0.00005897 0.99999999 -33.03040016 |
| 15823 | | Axis 0.00016358 -0.00039463 -0.99999991 |
| 15824 | | Axis point 29.65283524 275.62560509 0.00000000 |
| 15825 | | Rotation angle (degrees) 15.69629254 |
| 15826 | | Shift along axis 33.01116459 |
| 15827 | | |
| 15828 | | |
| 15829 | | > fitmap #6 inMap #4 |
| 15830 | | |
| 15831 | | Fit map cryosparc_P76_J135_008_volume_map_sharp.mrc in map |
| 15832 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 91413 points |
| 15833 | | correlation = 0.4513, correlation about mean = 0.09398, overlap = 2583 |
| 15834 | | steps = 28, shift = 0.0171, angle = 0.0122 degrees |
| 15835 | | |
| 15836 | | Position of cryosparc_P76_J135_008_volume_map_sharp.mrc (#6) relative to |
| 15837 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15838 | | Matrix rotation and translation |
| 15839 | | 0.96274285 0.27041858 0.00005394 -73.47718548 |
| 15840 | | -0.27041859 0.96274285 0.00001683 18.26922421 |
| 15841 | | -0.00004738 -0.00003079 1.00000000 -32.98864058 |
| 15842 | | Axis -0.00008804 0.00018734 -0.99999998 |
| 15843 | | Axis point 29.54095112 275.77576545 0.00000000 |
| 15844 | | Rotation angle (degrees) 15.68917694 |
| 15845 | | Shift along axis 32.99853146 |
| 15846 | | |
| 15847 | | |
| 15848 | | > fitmap #6 inMap #4 |
| 15849 | | |
| 15850 | | Fit map cryosparc_P76_J135_008_volume_map_sharp.mrc in map |
| 15851 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 91413 points |
| 15852 | | correlation = 0.4511, correlation about mean = 0.094, overlap = 2583 |
| 15853 | | steps = 28, shift = 0.0129, angle = 0.00847 degrees |
| 15854 | | |
| 15855 | | Position of cryosparc_P76_J135_008_volume_map_sharp.mrc (#6) relative to |
| 15856 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 15857 | | Matrix rotation and translation |
| 15858 | | 0.96274853 0.27039835 -0.00008476 -73.44570568 |
| 15859 | | -0.27039836 0.96274853 -0.00002995 18.26113349 |
| 15860 | | 0.00007350 0.00005176 1.00000000 -33.02480113 |
| 15861 | | Axis 0.00015109 -0.00029265 -0.99999995 |
| 15862 | | Axis point 29.58602593 275.71475425 0.00000000 |
| 15863 | | Rotation angle (degrees) 15.68797362 |
| 15864 | | Shift along axis 33.00835839 |
| 15865 | | |
| 15866 | | |
| 15867 | | > select clear |
| 15868 | | |
| 15869 | | > volume #6 level 0.114 |
| 15870 | | |
| 15871 | | > hide #!4 models |
| 15872 | | |
| 15873 | | > show #!4 models |
| 15874 | | |
| 15875 | | > hide #!4 models |
| 15876 | | |
| 15877 | | > hide #!3 models |
| 15878 | | |
| 15879 | | > transparency 0 |
| 15880 | | |
| 15881 | | > show #!4 models |
| 15882 | | |
| 15883 | | > hide #!6 models |
| 15884 | | |
| 15885 | | > hide #!4 models |
| 15886 | | |
| 15887 | | > show #!4 models |
| 15888 | | |
| 15889 | | > hide #!4 models |
| 15890 | | |
| 15891 | | > show #!4 models |
| 15892 | | |
| 15893 | | > hide #!4 models |
| 15894 | | |
| 15895 | | > show #!6 models |
| 15896 | | |
| 15897 | | > hide #!2 models |
| 15898 | | |
| 15899 | | > show #!4 models |
| 15900 | | |
| 15901 | | > hide #!4 models |
| 15902 | | |
| 15903 | | > show #!4 models |
| 15904 | | |
| 15905 | | > volume #6 level 0.1291 |
| 15906 | | |
| 15907 | | > volume #6 level 0.1032 |
| 15908 | | |
| 15909 | | > volume #4 level 0.2084 |
| 15910 | | |
| 15911 | | > hide #!6 models |
| 15912 | | |
| 15913 | | > show #!6 models |
| 15914 | | |
| 15915 | | > hide #!6 models |
| 15916 | | |
| 15917 | | > show #!6 models |
| 15918 | | |
| 15919 | | > hide #!6 models |
| 15920 | | |
| 15921 | | > show #!6 models |
| 15922 | | |
| 15923 | | > hide #!6 models |
| 15924 | | |
| 15925 | | > show #!6 models |
| 15926 | | |
| 15927 | | > hide #!6 models |
| 15928 | | |
| 15929 | | > show #!6 models |
| 15930 | | |
| 15931 | | > hide #!6 models |
| 15932 | | |
| 15933 | | > show #!6 models |
| 15934 | | |
| 15935 | | > hide #!6 models |
| 15936 | | |
| 15937 | | > hide #!4 models |
| 15938 | | |
| 15939 | | > show #!5 models |
| 15940 | | |
| 15941 | | > show #!8 models |
| 15942 | | |
| 15943 | | > show #!6 models |
| 15944 | | |
| 15945 | | > hide #!8 models |
| 15946 | | |
| 15947 | | > hide #!6 models |
| 15948 | | |
| 15949 | | > show #!8 models |
| 15950 | | |
| 15951 | | > hide #!8 models |
| 15952 | | |
| 15953 | | > show #!8 models |
| 15954 | | |
| 15955 | | > show #!6 models |
| 15956 | | |
| 15957 | | > hide #!6 models |
| 15958 | | |
| 15959 | | > hide #!8 models |
| 15960 | | |
| 15961 | | > show #!8 models |
| 15962 | | |
| 15963 | | > show #!6 models |
| 15964 | | |
| 15965 | | > hide #!6 models |
| 15966 | | |
| 15967 | | > transparency 50 |
| 15968 | | |
| 15969 | | > hide #!5 models |
| 15970 | | |
| 15971 | | > show #!4 models |
| 15972 | | |
| 15973 | | > volume #4 level 0.3736 |
| 15974 | | |
| 15975 | | > volume #4 level 0.2414 |
| 15976 | | |
| 15977 | | > hide #!8 models |
| 15978 | | |
| 15979 | | > show #!6 models |
| 15980 | | |
| 15981 | | > hide #!4 models |
| 15982 | | |
| 15983 | | > show #!8 models |
| 15984 | | |
| 15985 | | > volume #6 level 0.09835 |
| 15986 | | |
| 15987 | | > hide #!6 models |
| 15988 | | |
| 15989 | | > show #!2 models |
| 15990 | | |
| 15991 | | > hide #!2 models |
| 15992 | | |
| 15993 | | > show #!27 models |
| 15994 | | |
| 15995 | | > hide #!27 models |
| 15996 | | |
| 15997 | | > show #!6 models |
| 15998 | | |
| 15999 | | > hide #!6 models |
| 16000 | | |
| 16001 | | > show #!5 models |
| 16002 | | |
| 16003 | | > hide #!5 models |
| 16004 | | |
| 16005 | | > rename #5 231030_N55H_Chol_193 |
| 16006 | | |
| 16007 | | > rename #5 id #20 |
| 16008 | | |
| 16009 | | > rename #6 id #5 |
| 16010 | | |
| 16011 | | > show #!20 models |
| 16012 | | |
| 16013 | | > hide #!20 models |
| 16014 | | |
| 16015 | | > show #!20 models |
| 16016 | | |
| 16017 | | > hide #!20 models |
| 16018 | | |
| 16019 | | > show #!4 models |
| 16020 | | |
| 16021 | | > show #!2 models |
| 16022 | | |
| 16023 | | > hide #!4 models |
| 16024 | | |
| 16025 | | > show #!4 models |
| 16026 | | |
| 16027 | | > hide #!2 models |
| 16028 | | |
| 16029 | | > hide #!4 models |
| 16030 | | |
| 16031 | | > show #!20 models |
| 16032 | | |
| 16033 | | > show #!5 models |
| 16034 | | |
| 16035 | | > show #!4 models |
| 16036 | | |
| 16037 | | > hide #!4 models |
| 16038 | | |
| 16039 | | > show #!1 models |
| 16040 | | |
| 16041 | | > hide #!20 models |
| 16042 | | |
| 16043 | | > hide #!8 models |
| 16044 | | |
| 16045 | | > hide #!5 models |
| 16046 | | |
| 16047 | | > show #!5 models |
| 16048 | | |
| 16049 | | > hide #!5 models |
| 16050 | | |
| 16051 | | > show #!5 models |
| 16052 | | |
| 16053 | | > hide #!5 models |
| 16054 | | |
| 16055 | | > hide #!1 models |
| 16056 | | |
| 16057 | | > show #!2 models |
| 16058 | | |
| 16059 | | > hide #!2 models |
| 16060 | | |
| 16061 | | > show #!4 models |
| 16062 | | |
| 16063 | | > show #!20 models |
| 16064 | | |
| 16065 | | > hide #!4 models |
| 16066 | | |
| 16067 | | > show #!8 models |
| 16068 | | |
| 16069 | | > hide #!8 models |
| 16070 | | |
| 16071 | | > view 1 |
| 16072 | | |
| 16073 | | > view 2 |
| 16074 | | |
| 16075 | | Expected an objects specifier or a view name or a keyword |
| 16076 | | |
| 16077 | | > show #!8 models |
| 16078 | | |
| 16079 | | > hide #!20 models |
| 16080 | | |
| 16081 | | > show #!20 models |
| 16082 | | |
| 16083 | | > hide #!20 models |
| 16084 | | |
| 16085 | | > show #!20 models |
| 16086 | | |
| 16087 | | > hide #!20 models |
| 16088 | | |
| 16089 | | > show #!20 models |
| 16090 | | |
| 16091 | | > hide #!20 models |
| 16092 | | |
| 16093 | | > show #!20 models |
| 16094 | | |
| 16095 | | > hide #!20 models |
| 16096 | | |
| 16097 | | > show #!20 models |
| 16098 | | |
| 16099 | | > hide #!20 models |
| 16100 | | |
| 16101 | | > show #!20 models |
| 16102 | | |
| 16103 | | > hide #!20 models |
| 16104 | | |
| 16105 | | > show #!20 models |
| 16106 | | |
| 16107 | | > hide #!20 models |
| 16108 | | |
| 16109 | | > view orient |
| 16110 | | |
| 16111 | | > turn x 90 |
| 16112 | | |
| 16113 | | [Repeated 2 time(s)] |
| 16114 | | |
| 16115 | | > show #!4 models |
| 16116 | | |
| 16117 | | > view orient |
| 16118 | | |
| 16119 | | [Repeated 3 time(s)] |
| 16120 | | |
| 16121 | | > turn x 90 |
| 16122 | | |
| 16123 | | [Repeated 2 time(s)] |
| 16124 | | |
| 16125 | | > hide #!8 models |
| 16126 | | |
| 16127 | | > view name 1 |
| 16128 | | |
| 16129 | | > save "C:/Users/OJS/OneDrive - |
| 16130 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 16131 | | |
| 16132 | | > show #!8 models |
| 16133 | | |
| 16134 | | > hide #!4 models |
| 16135 | | |
| 16136 | | > select |
| 16137 | | |
| 16138 | | 46296 atoms, 47094 bonds, 18 pseudobonds, 3702 residues, 16 models selected |
| 16139 | | |
| 16140 | | > ribbon style thickness 0.6 |
| 16141 | | |
| 16142 | | > select clear |
| 16143 | | |
| 16144 | | > show #!20 models |
| 16145 | | |
| 16146 | | > ui tool show "Selection Inspector" |
| 16147 | | |
| 16148 | | > select add #8 |
| 16149 | | |
| 16150 | | 11646 atoms, 11886 bonds, 6 pseudobonds, 1230 residues, 2 models selected |
| 16151 | | |
| 16152 | | > select add #20 |
| 16153 | | |
| 16154 | | 22158 atoms, 22722 bonds, 12 pseudobonds, 2418 residues, 4 models selected |
| 16155 | | |
| 16156 | | > ui tool show "Selection Inspector" |
| 16157 | | |
| 16158 | | > setattr =sel p display false |
| 16159 | | |
| 16160 | | Assigning display attribute to 12 items |
| 16161 | | |
| 16162 | | > size =sel stickRadius 0.3 |
| 16163 | | |
| 16164 | | Changed 22722 bond radii |
| 16165 | | |
| 16166 | | > select clear |
| 16167 | | |
| 16168 | | > hide #!20 models |
| 16169 | | |
| 16170 | | > select ::name="CLR" |
| 16171 | | |
| 16172 | | 504 atoms, 558 bonds, 18 residues, 1 model selected |
| 16173 | | |
| 16174 | | > color sel yellow |
| 16175 | | |
| 16176 | | > select ::name="Y01" |
| 16177 | | |
| 16178 | | 1008 atoms, 1044 bonds, 12 residues, 1 model selected |
| 16179 | | |
| 16180 | | > select ::name="6OU" |
| 16181 | | |
| 16182 | | 2352 atoms, 2304 bonds, 48 residues, 2 models selected |
| 16183 | | |
| 16184 | | > select clear |
| 16185 | | |
| 16186 | | > hide #!8 models |
| 16187 | | |
| 16188 | | > show #!8 models |
| 16189 | | |
| 16190 | | > show #!4 models |
| 16191 | | |
| 16192 | | > clip front 0 |
| 16193 | | |
| 16194 | | > volume #4 level 0.1753 |
| 16195 | | |
| 16196 | | > hide #!4 models |
| 16197 | | |
| 16198 | | > show #!1 models |
| 16199 | | |
| 16200 | | > hide #!1 models |
| 16201 | | |
| 16202 | | > show #!3 models |
| 16203 | | |
| 16204 | | > volume #3 level 0.05069 |
| 16205 | | |
| 16206 | | > close #3 |
| 16207 | | |
| 16208 | | > show #!5 models |
| 16209 | | |
| 16210 | | > volume #5 level 0.07195 |
| 16211 | | |
| 16212 | | > hide #!5 models |
| 16213 | | |
| 16214 | | > hide #!8 models |
| 16215 | | |
| 16216 | | > show #!2 models |
| 16217 | | |
| 16218 | | > show #!20 models |
| 16219 | | |
| 16220 | | > volume #2 level 0.146 |
| 16221 | | |
| 16222 | | > volume #2 level 0.1385 |
| 16223 | | |
| 16224 | | > volume #2 level 0.1084 |
| 16225 | | |
| 16226 | | > hide #!2 models |
| 16227 | | |
| 16228 | | > show #!4 models |
| 16229 | | |
| 16230 | | > hide #!20 models |
| 16231 | | |
| 16232 | | > show #!8 models |
| 16233 | | |
| 16234 | | > select |
| 16235 | | |
| 16236 | | 46296 atoms, 47094 bonds, 18 pseudobonds, 3702 residues, 15 models selected |
| 16237 | | |
| 16238 | | > style sel stick |
| 16239 | | |
| 16240 | | Changed 46296 atom styles |
| 16241 | | |
| 16242 | | > select clear |
| 16243 | | |
| 16244 | | > hide #!8 models |
| 16245 | | |
| 16246 | | > show #!8 models |
| 16247 | | |
| 16248 | | > hide #!8 models |
| 16249 | | |
| 16250 | | > hide #!4 models |
| 16251 | | |
| 16252 | | > show #!2 models |
| 16253 | | |
| 16254 | | > volume #2 level 0.09581 |
| 16255 | | |
| 16256 | | > surface dust #2 size 8.3 |
| 16257 | | |
| 16258 | | > hide #!2 models |
| 16259 | | |
| 16260 | | > show #!4 models |
| 16261 | | |
| 16262 | | > show #!8 models |
| 16263 | | |
| 16264 | | > show #!20 models |
| 16265 | | |
| 16266 | | > hide #!20 models |
| 16267 | | |
| 16268 | | > show #!20 models |
| 16269 | | |
| 16270 | | > hide #!20 models |
| 16271 | | |
| 16272 | | > surface dust #4 size 8.48 |
| 16273 | | |
| 16274 | | > volume #4 level 0.1478 |
| 16275 | | |
| 16276 | | > show #!20 models |
| 16277 | | |
| 16278 | | > show #!2 models |
| 16279 | | |
| 16280 | | > hide #!4 models |
| 16281 | | |
| 16282 | | > hide #!8 models |
| 16283 | | |
| 16284 | | > hide #!2 models |
| 16285 | | |
| 16286 | | > hide #!20 models |
| 16287 | | |
| 16288 | | > show #!27 models |
| 16289 | | |
| 16290 | | > hide #!27 models |
| 16291 | | |
| 16292 | | > show #!27 models |
| 16293 | | |
| 16294 | | > hide #!27 models |
| 16295 | | |
| 16296 | | > show #!5 models |
| 16297 | | |
| 16298 | | > volume #5 level 0.07977 |
| 16299 | | |
| 16300 | | > volume #5 level 0.07195 |
| 16301 | | |
| 16302 | | > surface dust #5 size 8.48 |
| 16303 | | |
| 16304 | | > volume #5 level 0.06021 |
| 16305 | | |
| 16306 | | > show #!20 models |
| 16307 | | |
| 16308 | | > hide #!20 models |
| 16309 | | |
| 16310 | | > show #!20 models |
| 16311 | | |
| 16312 | | > hide #!20 models |
| 16313 | | |
| 16314 | | > clip front 1 |
| 16315 | | |
| 16316 | | [Repeated 28 time(s)] |
| 16317 | | |
| 16318 | | > ui tool show "Hide Dust" |
| 16319 | | |
| 16320 | | > surface dust #5 size 0.85 |
| 16321 | | |
| 16322 | | > show #!20 models |
| 16323 | | |
| 16324 | | > hide #!20 models |
| 16325 | | |
| 16326 | | > show #!20 models |
| 16327 | | |
| 16328 | | > hide #!20 models |
| 16329 | | |
| 16330 | | > show #!20 models |
| 16331 | | |
| 16332 | | > volume #5 level 0.06852 |
| 16333 | | |
| 16334 | | > hide #!20 models |
| 16335 | | |
| 16336 | | > show #!20 models |
| 16337 | | |
| 16338 | | > hide #!5 models |
| 16339 | | |
| 16340 | | > show #!5 models |
| 16341 | | |
| 16342 | | > ~clip |
| 16343 | | |
| 16344 | | > view 1 |
| 16345 | | |
| 16346 | | > clip front t0 |
| 16347 | | |
| 16348 | | Invalid "front" argument: Expected 'off' or a number |
| 16349 | | |
| 16350 | | > clip front 0 |
| 16351 | | |
| 16352 | | > clip front -1 |
| 16353 | | |
| 16354 | | [Repeated 7 time(s)] |
| 16355 | | |
| 16356 | | > hide #!20 models |
| 16357 | | |
| 16358 | | > clip front -1 |
| 16359 | | |
| 16360 | | [Repeated 2 time(s)] |
| 16361 | | |
| 16362 | | > volume #5 level 0.06168 |
| 16363 | | |
| 16364 | | > show #!20 models |
| 16365 | | |
| 16366 | | > hide #!5 models |
| 16367 | | |
| 16368 | | > select #20/D:166 |
| 16369 | | |
| 16370 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 16371 | | |
| 16372 | | > select #20/D:167 |
| 16373 | | |
| 16374 | | 7 atoms, 6 bonds, 1 residue, 1 model selected |
| 16375 | | |
| 16376 | | > show #!27 models |
| 16377 | | |
| 16378 | | > hide #!27 models |
| 16379 | | |
| 16380 | | > show #!5 models |
| 16381 | | |
| 16382 | | > clip front -1 |
| 16383 | | |
| 16384 | | [Repeated 14 time(s)] |
| 16385 | | |
| 16386 | | > clip front 1 |
| 16387 | | |
| 16388 | | [Repeated 30 time(s)] |
| 16389 | | |
| 16390 | | > hide #!20 models |
| 16391 | | |
| 16392 | | > show #!20 models |
| 16393 | | |
| 16394 | | > hide #!20 models |
| 16395 | | |
| 16396 | | > show #!20 models |
| 16397 | | |
| 16398 | | > hide #!20 models |
| 16399 | | |
| 16400 | | > hide #!5 models |
| 16401 | | |
| 16402 | | > show #!5 models |
| 16403 | | |
| 16404 | | > show #!20 models |
| 16405 | | |
| 16406 | | > hide #!5 models |
| 16407 | | |
| 16408 | | > select #20/D:34 |
| 16409 | | |
| 16410 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 16411 | | |
| 16412 | | > select #20/D:33 |
| 16413 | | |
| 16414 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 16415 | | |
| 16416 | | > show sel atoms |
| 16417 | | |
| 16418 | | > show #!5 models |
| 16419 | | |
| 16420 | | > hide #!5 models |
| 16421 | | |
| 16422 | | > show #!27 models |
| 16423 | | |
| 16424 | | > hide #!27 models |
| 16425 | | |
| 16426 | | > show #!5 models |
| 16427 | | |
| 16428 | | > select clear |
| 16429 | | |
| 16430 | | > close #5 |
| 16431 | | |
| 16432 | | > ~clip |
| 16433 | | |
| 16434 | | > select clear |
| 16435 | | |
| 16436 | | > save "C:/Users/OJS/OneDrive - |
| 16437 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 16438 | | |
| 16439 | | ——— End of log from Mon Oct 30 21:11:50 2023 ——— |
| 16440 | | |
| 16441 | | opened ChimeraX session |
| 16442 | | |
| 16443 | | > open "C:/Users/OJS/OneDrive - |
| 16444 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/N55H_CBX_P52_J662_003_volume_map_sharp.mrc" |
| 16445 | | |
| 16446 | | Opened N55H_CBX_P52_J662_003_volume_map_sharp.mrc as #3, grid size |
| 16447 | | 400,400,400, pixel 0.83, shown at level 0.0457, step 2, values float32 |
| 16448 | | |
| 16449 | | > volume #3 step 1 |
| 16450 | | |
| 16451 | | > volume #3 level 0.06665 |
| 16452 | | |
| 16453 | | > volume #3 level 0.08886 |
| 16454 | | |
| 16455 | | > hide #!20 models |
| 16456 | | |
| 16457 | | > color #3 #aa55ffff models |
| 16458 | | |
| 16459 | | > show #!2 models |
| 16460 | | |
| 16461 | | > ui mousemode right "rotate selected models" |
| 16462 | | |
| 16463 | | > select add #3 |
| 16464 | | |
| 16465 | | 2 models selected |
| 16466 | | |
| 16467 | | > view matrix models |
| 16468 | | > #3,-0.96397,0.26452,0.028123,277.58,0.18689,0.7487,-0.63601,113.02,-0.18929,-0.60784,-0.77117,417.28 |
| 16469 | | |
| 16470 | | > view matrix models |
| 16471 | | > #3,-0.49517,0.86868,0.014237,101.71,0.86795,0.49535,-0.035848,-54.541,-0.038192,-0.0053939,-0.99926,328.89 |
| 16472 | | |
| 16473 | | > ui mousemode right "translate selected models" |
| 16474 | | |
| 16475 | | > view matrix models |
| 16476 | | > #3,-0.49517,0.86868,0.014237,74.202,0.86795,0.49535,-0.035848,-86.042,-0.038192,-0.0053939,-0.99926,328.36 |
| 16477 | | |
| 16478 | | > view matrix models |
| 16479 | | > #3,-0.49517,0.86868,0.014237,71.067,0.86795,0.49535,-0.035848,-80.683,-0.038192,-0.0053939,-0.99926,317.9 |
| 16480 | | |
| 16481 | | > ui tool show "Fit in Map" |
| 16482 | | |
| 16483 | | > fitmap #3 inMap #4 |
| 16484 | | |
| 16485 | | Fit map N55H_CBX_P52_J662_003_volume_map_sharp.mrc in map |
| 16486 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 134279 points |
| 16487 | | correlation = 0.2432, correlation about mean = 0.03021, overlap = 1539 |
| 16488 | | steps = 132, shift = 4.26, angle = 7.25 degrees |
| 16489 | | |
| 16490 | | Position of N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) relative to |
| 16491 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 16492 | | Matrix rotation and translation |
| 16493 | | -0.44604297 0.89482100 -0.01846751 64.39154222 |
| 16494 | | 0.89197825 0.44613399 0.07307023 -91.25133189 |
| 16495 | | 0.07362376 0.01611985 -0.99715580 292.00912683 |
| 16496 | | Axis -0.52578281 -0.85021387 -0.02624503 |
| 16497 | | Axis point 55.74258392 0.00000000 148.74132017 |
| 16498 | | Rotation angle (degrees) 176.89547290 |
| 16499 | | Shift along axis 36.06339263 |
| 16500 | | |
| 16501 | | |
| 16502 | | > fitmap #3 inMap #4 |
| 16503 | | |
| 16504 | | Fit map N55H_CBX_P52_J662_003_volume_map_sharp.mrc in map |
| 16505 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 134279 points |
| 16506 | | correlation = 0.2432, correlation about mean = 0.03011, overlap = 1539 |
| 16507 | | steps = 80, shift = 0.0127, angle = 0.00985 degrees |
| 16508 | | |
| 16509 | | Position of N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) relative to |
| 16510 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 16511 | | Matrix rotation and translation |
| 16512 | | -0.44616793 0.89475962 -0.01842279 64.42342060 |
| 16513 | | 0.89191112 0.44625383 0.07315792 -91.26458030 |
| 16514 | | 0.07367999 0.01620922 -0.99715020 291.98732223 |
| 16515 | | Axis -0.52572327 -0.85024912 -0.02629605 |
| 16516 | | Axis point 55.75838081 0.00000000 148.73372482 |
| 16517 | | Rotation angle (degrees) 176.89521338 |
| 16518 | | Shift along axis 36.05062428 |
| 16519 | | |
| 16520 | | |
| 16521 | | > show #!4 models |
| 16522 | | |
| 16523 | | > view matrix models |
| 16524 | | > #3,-0.44617,0.89476,-0.018423,63.377,0.89191,0.44625,0.073158,-98.021,0.07368,0.016209,-0.99715,290.08 |
| 16525 | | |
| 16526 | | > fitmap #3 inMap #4 |
| 16527 | | |
| 16528 | | Fit map N55H_CBX_P52_J662_003_volume_map_sharp.mrc in map |
| 16529 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 134279 points |
| 16530 | | correlation = 0.418, correlation about mean = 0.1586, overlap = 3516 |
| 16531 | | steps = 160, shift = 1.28, angle = 13.4 degrees |
| 16532 | | |
| 16533 | | Position of N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) relative to |
| 16534 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 16535 | | Matrix rotation and translation |
| 16536 | | -0.23929892 0.97094594 -0.00000769 14.23169189 |
| 16537 | | 0.97094594 0.23929892 -0.00001506 -65.21440691 |
| 16538 | | -0.00001278 -0.00001107 -1.00000000 306.49998235 |
| 16539 | | Axis 0.61675619 0.78715424 0.00000366 |
| 16540 | | Axis point 32.66476800 -0.00000000 153.25010137 |
| 16541 | | Rotation angle (degrees) 179.99981485 |
| 16542 | | Shift along axis -42.55519001 |
| 16543 | | |
| 16544 | | |
| 16545 | | > fitmap #3 inMap #4 |
| 16546 | | |
| 16547 | | Fit map N55H_CBX_P52_J662_003_volume_map_sharp.mrc in map |
| 16548 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 134279 points |
| 16549 | | correlation = 0.418, correlation about mean = 0.1586, overlap = 3516 |
| 16550 | | steps = 40, shift = 0.0107, angle = 0.00686 degrees |
| 16551 | | |
| 16552 | | Position of N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) relative to |
| 16553 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 16554 | | Matrix rotation and translation |
| 16555 | | -0.23930124 0.97094536 -0.00012351 14.24102859 |
| 16556 | | 0.97094537 0.23930124 -0.00004533 -65.21501984 |
| 16557 | | -0.00001446 -0.00013077 -0.99999999 306.52005132 |
| 16558 | | Axis -0.61672329 -0.78718002 0.00005649 |
| 16559 | | Axis point 32.66041922 0.00000000 153.25857649 |
| 16560 | | Rotation angle (degrees) 179.99603111 |
| 16561 | | Shift along axis 42.57050201 |
| 16562 | | |
| 16563 | | |
| 16564 | | > fitmap #3 inMap #4 |
| 16565 | | |
| 16566 | | Fit map N55H_CBX_P52_J662_003_volume_map_sharp.mrc in map |
| 16567 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 134279 points |
| 16568 | | correlation = 0.418, correlation about mean = 0.1586, overlap = 3516 |
| 16569 | | steps = 28, shift = 0.0173, angle = 0.0103 degrees |
| 16570 | | |
| 16571 | | Position of N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) relative to |
| 16572 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 16573 | | Matrix rotation and translation |
| 16574 | | -0.23927644 0.97095148 0.00004723 14.22615967 |
| 16575 | | 0.97095148 0.23927644 0.00000312 -65.21953843 |
| 16576 | | -0.00000827 0.00004661 -1.00000000 306.49099554 |
| 16577 | | Axis 0.61673757 0.78716883 0.00001691 |
| 16578 | | Axis point 32.66588431 0.00000000 153.24574506 |
| 16579 | | Rotation angle (degrees) 179.99798008 |
| 16580 | | Shift along axis -42.55979828 |
| 16581 | | |
| 16582 | | |
| 16583 | | > select clear |
| 16584 | | |
| 16585 | | > volume #3 level 0.1096 |
| 16586 | | |
| 16587 | | > hide #!2 models |
| 16588 | | |
| 16589 | | > hide #!4 models |
| 16590 | | |
| 16591 | | > volume #3 level 0.09196 |
| 16592 | | |
| 16593 | | > show #!4 models |
| 16594 | | |
| 16595 | | > hide #!4 models |
| 16596 | | |
| 16597 | | > show #!4 models |
| 16598 | | |
| 16599 | | > hide #!4 models |
| 16600 | | |
| 16601 | | > open C:/Users/OJS/Downloads/cryosparc_P76_J149_007_volume_map_sharp.mrc |
| 16602 | | |
| 16603 | | Opened cryosparc_P76_J149_007_volume_map_sharp.mrc as #5, grid size |
| 16604 | | 400,400,400, pixel 0.848, shown at level 0.0458, step 2, values float32 |
| 16605 | | |
| 16606 | | > open "C:/Users/OJS/OneDrive - |
| 16607 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/Maps/N55H_MBCD_100_P76_J149_007_volume_map_sharp.mrc" |
| 16608 | | |
| 16609 | | Opened N55H_MBCD_100_P76_J149_007_volume_map_sharp.mrc as #6, grid size |
| 16610 | | 400,400,400, pixel 0.848, shown at level 0.0458, step 2, values float32 |
| 16611 | | |
| 16612 | | > volume #5 step 1 |
| 16613 | | |
| 16614 | | > volume #5 level 0.07407 |
| 16615 | | |
| 16616 | | > close #5 |
| 16617 | | |
| 16618 | | > volume #6 step 1 |
| 16619 | | |
| 16620 | | > volume #6 level 0.08068 |
| 16621 | | |
| 16622 | | > combine #8 |
| 16623 | | |
| 16624 | | > hide #!3 models |
| 16625 | | |
| 16626 | | > select add #5 |
| 16627 | | |
| 16628 | | 11646 atoms, 11886 bonds, 6 pseudobonds, 1230 residues, 2 models selected |
| 16629 | | |
| 16630 | | > ui mousemode right "rotate selected models" |
| 16631 | | |
| 16632 | | > ui mousemode right "translate selected models" |
| 16633 | | |
| 16634 | | > view matrix models #5,1,0,0,-4.9462,0,1,0,-3.9886,0,0,1,42.353 |
| 16635 | | |
| 16636 | | > view matrix models #5,1,0,0,30.084,0,1,0,26.161,0,0,1,65.47 |
| 16637 | | |
| 16638 | | > view matrix models #5,1,0,0,36.794,0,1,0,36.679,0,0,1,37.125 |
| 16639 | | |
| 16640 | | > fitmap #3 inMap #4 |
| 16641 | | |
| 16642 | | Fit map N55H_CBX_P52_J662_003_volume_map_sharp.mrc in map |
| 16643 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 125306 points |
| 16644 | | correlation = 0.4197, correlation about mean = 0.1503, overlap = 3455 |
| 16645 | | steps = 28, shift = 0.0224, angle = 0.00731 degrees |
| 16646 | | |
| 16647 | | Position of N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) relative to |
| 16648 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 16649 | | Matrix rotation and translation |
| 16650 | | -0.23915853 0.97098053 0.00000838 14.18614503 |
| 16651 | | 0.97098053 0.23915853 0.00000156 -65.20234225 |
| 16652 | | -0.00000049 0.00000851 -1.00000000 306.49087191 |
| 16653 | | Axis 0.61680007 0.78711986 0.00001024 |
| 16654 | | Axis point 32.64043520 0.00000000 153.24578786 |
| 16655 | | Rotation angle (degrees) 179.99967701 |
| 16656 | | Shift along axis -42.56890343 |
| 16657 | | |
| 16658 | | |
| 16659 | | > fitmap #5 inMap #6 |
| 16660 | | |
| 16661 | | Fit molecule copy of 231026_N55H_MBCD_37_wo_water.pdb (#5) to map |
| 16662 | | N55H_MBCD_100_P76_J149_007_volume_map_sharp.mrc (#6) using 11646 atoms |
| 16663 | | average map value = 0.05277, steps = 64 |
| 16664 | | shifted from previous position = 2.77 |
| 16665 | | rotated from previous position = 1.52 degrees |
| 16666 | | atoms outside contour = 8707, contour level = 0.080676 |
| 16667 | | |
| 16668 | | Position of copy of 231026_N55H_MBCD_37_wo_water.pdb (#5) relative to |
| 16669 | | N55H_MBCD_100_P76_J149_007_volume_map_sharp.mrc (#6) coordinates: |
| 16670 | | Matrix rotation and translation |
| 16671 | | 0.99964939 -0.02562452 -0.00666868 44.03985194 |
| 16672 | | 0.02560856 0.99966900 -0.00246779 33.65444613 |
| 16673 | | 0.00672971 0.00229615 0.99997472 35.80800107 |
| 16674 | | Axis 0.08959827 -0.25199179 0.96357267 |
| 16675 | | Axis point -1587.94456601 1635.59892115 0.00000000 |
| 16676 | | Rotation angle (degrees) 1.52338536 |
| 16677 | | Shift along axis 29.96886153 |
| 16678 | | |
| 16679 | | |
| 16680 | | > ui mousemode right "rotate selected models" |
| 16681 | | |
| 16682 | | > view matrix models |
| 16683 | | > #5,0.9691,-0.2398,0.057887,68.083,0.24218,0.96947,-0.038392,13.465,-0.046914,0.051225,0.99758,36.787 |
| 16684 | | |
| 16685 | | > view matrix models |
| 16686 | | > #5,0.93896,-0.30018,-0.16806,112.43,0.28755,0.95298,-0.095592,17.663,0.18885,0.041432,0.98113,8.4619 |
| 16687 | | |
| 16688 | | > fitmap #5 inMap #6 |
| 16689 | | |
| 16690 | | Fit molecule copy of 231026_N55H_MBCD_37_wo_water.pdb (#5) to map |
| 16691 | | N55H_MBCD_100_P76_J149_007_volume_map_sharp.mrc (#6) using 11646 atoms |
| 16692 | | average map value = 0.1001, steps = 100 |
| 16693 | | shifted from previous position = 7.45 |
| 16694 | | rotated from previous position = 11.2 degrees |
| 16695 | | atoms outside contour = 4675, contour level = 0.080676 |
| 16696 | | |
| 16697 | | Position of copy of 231026_N55H_MBCD_37_wo_water.pdb (#5) relative to |
| 16698 | | N55H_MBCD_100_P76_J149_007_volume_map_sharp.mrc (#6) coordinates: |
| 16699 | | Matrix rotation and translation |
| 16700 | | 0.96129828 -0.27550972 -0.00010971 76.57346047 |
| 16701 | | 0.27550973 0.96129828 0.00001137 1.78781713 |
| 16702 | | 0.00010233 -0.00004116 0.99999999 32.69883001 |
| 16703 | | Axis -0.00009533 -0.00038480 0.99999992 |
| 16704 | | Axis point 31.87995845 273.46681803 0.00000000 |
| 16705 | | Rotation angle (degrees) 15.99239409 |
| 16706 | | Shift along axis 32.69083949 |
| 16707 | | |
| 16708 | | |
| 16709 | | > fitmap #5 inMap #6 |
| 16710 | | |
| 16711 | | Fit molecule copy of 231026_N55H_MBCD_37_wo_water.pdb (#5) to map |
| 16712 | | N55H_MBCD_100_P76_J149_007_volume_map_sharp.mrc (#6) using 11646 atoms |
| 16713 | | average map value = 0.1001, steps = 28 |
| 16714 | | shifted from previous position = 0.0158 |
| 16715 | | rotated from previous position = 0.00847 degrees |
| 16716 | | atoms outside contour = 4672, contour level = 0.080676 |
| 16717 | | |
| 16718 | | Position of copy of 231026_N55H_MBCD_37_wo_water.pdb (#5) relative to |
| 16719 | | N55H_MBCD_100_P76_J149_007_volume_map_sharp.mrc (#6) coordinates: |
| 16720 | | Matrix rotation and translation |
| 16721 | | 0.96129545 -0.27551960 0.00001678 76.55526910 |
| 16722 | | 0.27551961 0.96129545 -0.00006451 1.79606625 |
| 16723 | | 0.00000164 0.00006664 1.00000000 32.68225057 |
| 16724 | | Axis 0.00023800 0.00002748 0.99999997 |
| 16725 | | Axis point 31.88426499 273.35049465 0.00000000 |
| 16726 | | Rotation angle (degrees) 15.99298207 |
| 16727 | | Shift along axis 32.70051946 |
| 16728 | | |
| 16729 | | |
| 16730 | | > fitmap #5 inMap #6 |
| 16731 | | |
| 16732 | | Fit molecule copy of 231026_N55H_MBCD_37_wo_water.pdb (#5) to map |
| 16733 | | N55H_MBCD_100_P76_J149_007_volume_map_sharp.mrc (#6) using 11646 atoms |
| 16734 | | average map value = 0.1001, steps = 28 |
| 16735 | | shifted from previous position = 0.0127 |
| 16736 | | rotated from previous position = 0.00241 degrees |
| 16737 | | atoms outside contour = 4673, contour level = 0.080676 |
| 16738 | | |
| 16739 | | Position of copy of 231026_N55H_MBCD_37_wo_water.pdb (#5) relative to |
| 16740 | | N55H_MBCD_100_P76_J149_007_volume_map_sharp.mrc (#6) coordinates: |
| 16741 | | Matrix rotation and translation |
| 16742 | | 0.96129634 -0.27551649 0.00003465 76.55119499 |
| 16743 | | 0.27551649 0.96129634 -0.00002657 1.79103887 |
| 16744 | | -0.00002599 0.00003509 1.00000000 32.70297024 |
| 16745 | | Axis 0.00011188 0.00011004 0.99999999 |
| 16746 | | Axis point 31.91172062 273.35000767 0.00000000 |
| 16747 | | Rotation angle (degrees) 15.99279622 |
| 16748 | | Shift along axis 32.71173181 |
| 16749 | | |
| 16750 | | |
| 16751 | | > transparency 60 |
| 16752 | | |
| 16753 | | > save |
| 16754 | | > C:/Users/OJS/Desktop/Phenix/230901_MBCD_Chol_N55H/231030_MBCD_37_Fit_P76_J149.pdb |
| 16755 | | > models #5 |
| 16756 | | |
| 16757 | | > hide #!5 models |
| 16758 | | |
| 16759 | | > hide #!6 models |
| 16760 | | |
| 16761 | | > select subtract #5 |
| 16762 | | |
| 16763 | | Nothing selected |
| 16764 | | |
| 16765 | | > show #!3 models |
| 16766 | | |
| 16767 | | > open |
| 16768 | | > C:/Users/OJS/Desktop/Phenix/220302_Cx43_N55H_CBX/RealSpaceRefine_197/MBCD_37_N55H_CBX_P52_J660_Fit_delLipid_real_space_refined_196-coot-4_real_space_refined_197.pdb |
| 16769 | | |
| 16770 | | Chain information for |
| 16771 | | MBCD_37_N55H_CBX_P52_J660_Fit_delLipid_real_space_refined_196-coot-4_real_space_refined_197.pdb |
| 16772 | | #7 |
| 16773 | | --- |
| 16774 | | Chain | Description |
| 16775 | | A B C D E F | No description available |
| 16776 | | |
| 16777 | | |
| 16778 | | > color #7 #aa55ffff |
| 16779 | | |
| 16780 | | > select add #7 |
| 16781 | | |
| 16782 | | 9258 atoms, 9594 bonds, 6 pseudobonds, 1056 residues, 2 models selected |
| 16783 | | |
| 16784 | | > hide sel atoms |
| 16785 | | |
| 16786 | | > show sel cartoons |
| 16787 | | |
| 16788 | | > ui mousemode right "rotate selected models" |
| 16789 | | |
| 16790 | | > color #7 #aa55ffff |
| 16791 | | |
| 16792 | | > ui mousemode right "rotate selected models" |
| 16793 | | |
| 16794 | | > view matrix models |
| 16795 | | > #7,-0.90462,0.26174,0.33638,218.87,0.26974,0.96264,-0.023609,-34.793,-0.32999,0.06938,-0.94143,353.77 |
| 16796 | | |
| 16797 | | > ui mousemode right "translate selected models" |
| 16798 | | |
| 16799 | | > view matrix models |
| 16800 | | > #7,-0.90462,0.26174,0.33638,207.86,0.26974,0.96264,-0.023609,-67.644,-0.32999,0.06938,-0.94143,336.07 |
| 16801 | | |
| 16802 | | > view matrix models |
| 16803 | | > #7,-0.90462,0.26174,0.33638,192.22,0.26974,0.96264,-0.023609,-74.12,-0.32999,0.06938,-0.94143,337.79 |
| 16804 | | |
| 16805 | | > view matrix models |
| 16806 | | > #7,-0.90462,0.26174,0.33638,193.31,0.26974,0.96264,-0.023609,-66.927,-0.32999,0.06938,-0.94143,343.5 |
| 16807 | | |
| 16808 | | > fitmap #7 inMap #3 |
| 16809 | | |
| 16810 | | Fit molecule |
| 16811 | | MBCD_37_N55H_CBX_P52_J660_Fit_delLipid_real_space_refined_196-coot-4_real_space_refined_197.pdb |
| 16812 | | (#7) to map N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) using 9258 atoms |
| 16813 | | average map value = 0.1253, steps = 152 |
| 16814 | | shifted from previous position = 5.83 |
| 16815 | | rotated from previous position = 19.7 degrees |
| 16816 | | atoms outside contour = 3250, contour level = 0.091964 |
| 16817 | | |
| 16818 | | Position of |
| 16819 | | MBCD_37_N55H_CBX_P52_J660_Fit_delLipid_real_space_refined_196-coot-4_real_space_refined_197.pdb |
| 16820 | | (#7) relative to N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) coordinates: |
| 16821 | | Matrix rotation and translation |
| 16822 | | 0.49990714 0.86607896 -0.00029547 -60.70579268 |
| 16823 | | -0.86607897 0.49990698 -0.00048555 226.85109909 |
| 16824 | | -0.00027282 0.00049863 0.99999984 -0.07794311 |
| 16825 | | Axis 0.00056818 -0.00001308 -0.99999984 |
| 16826 | | Axis point 166.08156441 165.99181723 0.00000000 |
| 16827 | | Rotation angle (degrees) 60.00615418 |
| 16828 | | Shift along axis 0.04048534 |
| 16829 | | |
| 16830 | | |
| 16831 | | > fitmap #7 inMap #3 |
| 16832 | | |
| 16833 | | Fit molecule |
| 16834 | | MBCD_37_N55H_CBX_P52_J660_Fit_delLipid_real_space_refined_196-coot-4_real_space_refined_197.pdb |
| 16835 | | (#7) to map N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) using 9258 atoms |
| 16836 | | average map value = 0.1253, steps = 40 |
| 16837 | | shifted from previous position = 0.0181 |
| 16838 | | rotated from previous position = 0.012 degrees |
| 16839 | | atoms outside contour = 3244, contour level = 0.091964 |
| 16840 | | |
| 16841 | | Position of |
| 16842 | | MBCD_37_N55H_CBX_P52_J660_Fit_delLipid_real_space_refined_196-coot-4_real_space_refined_197.pdb |
| 16843 | | (#7) relative to N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) coordinates: |
| 16844 | | Matrix rotation and translation |
| 16845 | | 0.50001920 0.86601422 -0.00040689 -60.70624634 |
| 16846 | | -0.86601426 0.50001894 -0.00060707 226.82632667 |
| 16847 | | -0.00032228 0.00065592 0.99999973 -0.09520959 |
| 16848 | | Axis 0.00072920 -0.00004884 -0.99999973 |
| 16849 | | Axis point 166.08921718 165.98768378 0.00000000 |
| 16850 | | Rotation angle (degrees) 59.99874720 |
| 16851 | | Shift along axis 0.03986346 |
| 16852 | | |
| 16853 | | |
| 16854 | | > hide #!7 models |
| 16855 | | |
| 16856 | | > show #!7 models |
| 16857 | | |
| 16858 | | > hide #!3 models |
| 16859 | | |
| 16860 | | > hide #!7 models |
| 16861 | | |
| 16862 | | > show #!5 models |
| 16863 | | |
| 16864 | | > hide #!5 models |
| 16865 | | |
| 16866 | | > show #!5 models |
| 16867 | | |
| 16868 | | > hide #!5 models |
| 16869 | | |
| 16870 | | > show #!4 models |
| 16871 | | |
| 16872 | | > hide #!4 models |
| 16873 | | |
| 16874 | | > show #!6 models |
| 16875 | | |
| 16876 | | > hide #!6 models |
| 16877 | | |
| 16878 | | > show #!7 models |
| 16879 | | |
| 16880 | | > hide #!7 models |
| 16881 | | |
| 16882 | | > show #!8 models |
| 16883 | | |
| 16884 | | > hide #!8 models |
| 16885 | | |
| 16886 | | > show #!8 models |
| 16887 | | |
| 16888 | | > hide #!8 models |
| 16889 | | |
| 16890 | | > show #!7 models |
| 16891 | | |
| 16892 | | > show #!3 models |
| 16893 | | |
| 16894 | | > show #!20 models |
| 16895 | | |
| 16896 | | > hide #!20 models |
| 16897 | | |
| 16898 | | > select ::name="CBO" |
| 16899 | | |
| 16900 | | 738 atoms, 810 bonds, 18 residues, 1 model selected |
| 16901 | | |
| 16902 | | > show sel atoms |
| 16903 | | |
| 16904 | | > color sel dark green |
| 16905 | | |
| 16906 | | > color sel byhetero |
| 16907 | | |
| 16908 | | > select clear |
| 16909 | | |
| 16910 | | > show #!20 models |
| 16911 | | |
| 16912 | | > hide #!3 models |
| 16913 | | |
| 16914 | | > select add #7 |
| 16915 | | |
| 16916 | | 9258 atoms, 9594 bonds, 6 pseudobonds, 1056 residues, 2 models selected |
| 16917 | | |
| 16918 | | > ui mousemode right "rotate selected models" |
| 16919 | | |
| 16920 | | > view matrix models |
| 16921 | | > #7,-0.94503,0.28835,0.1542,219.99,0.27573,0.9562,-0.098218,-53.126,-0.17577,-0.0503,-0.98315,341.37 |
| 16922 | | |
| 16923 | | > view matrix models |
| 16924 | | > #7,-0.96078,0.23433,0.14831,232.52,0.21903,0.96921,-0.11249,-43.593,-0.1701,-0.07559,-0.98252,344.54 |
| 16925 | | |
| 16926 | | > view matrix models |
| 16927 | | > #7,-0.96206,0.17524,0.20912,232.83,0.18137,0.98336,0.010329,-59.336,-0.20383,0.047864,-0.97784,328.87 |
| 16928 | | |
| 16929 | | > view matrix models |
| 16930 | | > #7,-0.79271,-0.59951,0.11046,349.26,-0.60848,0.76719,-0.20291,141.81,0.036901,-0.22806,-0.97295,333.98 |
| 16931 | | |
| 16932 | | > view matrix models |
| 16933 | | > #7,-0.70155,-0.66019,0.26827,318.98,-0.67909,0.73347,0.029129,122.03,-0.216,-0.16175,-0.9629,363.34 |
| 16934 | | |
| 16935 | | > view matrix models |
| 16936 | | > #7,-0.041437,-0.98909,0.14134,284.36,-0.99116,0.022846,-0.1307,317.5,0.12605,-0.1455,-0.9813,306.8 |
| 16937 | | |
| 16938 | | > view matrix models |
| 16939 | | > #7,0.085813,-0.97901,0.18485,254.6,-0.98241,-0.052267,0.17925,278.96,-0.16582,-0.19698,-0.96628,361.4 |
| 16940 | | |
| 16941 | | > view matrix models |
| 16942 | | > #7,0.23113,-0.96447,0.12795,237.16,-0.96683,-0.213,0.14095,309.21,-0.10869,-0.15628,-0.98171,347.62 |
| 16943 | | |
| 16944 | | > view matrix models |
| 16945 | | > #7,0.16688,-0.9799,0.10931,253.37,-0.9853,-0.16984,-0.018358,330.58,0.036555,-0.10464,-0.99384,316.87 |
| 16946 | | |
| 16947 | | > fitmap #7 inMap #3 |
| 16948 | | |
| 16949 | | Fit molecule |
| 16950 | | MBCD_37_N55H_CBX_P52_J660_Fit_delLipid_real_space_refined_196-coot-4_real_space_refined_197.pdb |
| 16951 | | (#7) to map N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) using 9258 atoms |
| 16952 | | average map value = 0.1254, steps = 72 |
| 16953 | | shifted from previous position = 0.281 |
| 16954 | | rotated from previous position = 7.54 degrees |
| 16955 | | atoms outside contour = 3246, contour level = 0.091964 |
| 16956 | | |
| 16957 | | Position of |
| 16958 | | MBCD_37_N55H_CBX_P52_J660_Fit_delLipid_real_space_refined_196-coot-4_real_space_refined_197.pdb |
| 16959 | | (#7) relative to N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) coordinates: |
| 16960 | | Matrix rotation and translation |
| 16961 | | -0.99999999 0.00005252 -0.00016020 332.01092919 |
| 16962 | | -0.00005262 -0.99999980 0.00063043 331.92708862 |
| 16963 | | -0.00016017 0.00063044 0.99999979 -0.11737608 |
| 16964 | | Axis 0.00007931 -0.00031509 -0.99999995 |
| 16965 | | Axis point 166.00982225 165.95919938 0.00000000 |
| 16966 | | Rotation angle (degrees) 179.99698799 |
| 16967 | | Shift along axis 0.03912311 |
| 16968 | | |
| 16969 | | |
| 16970 | | > select clear |
| 16971 | | |
| 16972 | | > morph #20,7 |
| 16973 | | |
| 16974 | | Computed 51 frame morph #9 |
| 16975 | | |
| 16976 | | > coordset #9 1,51 |
| 16977 | | |
| 16978 | | > hide #!9 models |
| 16979 | | |
| 16980 | | > show #!7 models |
| 16981 | | |
| 16982 | | > show #!3 models |
| 16983 | | |
| 16984 | | > close #9 |
| 16985 | | |
| 16986 | | > show #!5 models |
| 16987 | | |
| 16988 | | > hide #!3 models |
| 16989 | | |
| 16990 | | > hide #!7 models |
| 16991 | | |
| 16992 | | > show #!20 models |
| 16993 | | |
| 16994 | | > hide #!20 models |
| 16995 | | |
| 16996 | | > show #!27 models |
| 16997 | | |
| 16998 | | > hide #!27 models |
| 16999 | | |
| 17000 | | > show #!27 models |
| 17001 | | |
| 17002 | | > hide #!27 models |
| 17003 | | |
| 17004 | | > show #!20 models |
| 17005 | | |
| 17006 | | > hide #!20 models |
| 17007 | | |
| 17008 | | > show #!8 models |
| 17009 | | |
| 17010 | | > hide #!8 models |
| 17011 | | |
| 17012 | | > show #!6 models |
| 17013 | | |
| 17014 | | > show #!20 models |
| 17015 | | |
| 17016 | | > close #5 |
| 17017 | | |
| 17018 | | > hide #!6 models |
| 17019 | | |
| 17020 | | > show #!3 models |
| 17021 | | |
| 17022 | | > hide #!3 models |
| 17023 | | |
| 17024 | | > show #!3 models |
| 17025 | | |
| 17026 | | > show #!7 models |
| 17027 | | |
| 17028 | | > hide #!3 models |
| 17029 | | |
| 17030 | | > hide #!20 models |
| 17031 | | |
| 17032 | | > open |
| 17033 | | > C:/Users/OJS/Desktop/Phenix/220302_Cx43_N55H_CBX/RealSpaceRefine_199/231031_From197_CBX_Re_real_space_refined_199.pdb |
| 17034 | | |
| 17035 | | Chain information for 231031_From197_CBX_Re_real_space_refined_199.pdb #5 |
| 17036 | | --- |
| 17037 | | Chain | Description |
| 17038 | | A B C D E F | No description available |
| 17039 | | |
| 17040 | | |
| 17041 | | > color #5 #aa55ffff |
| 17042 | | |
| 17043 | | > select add #5 |
| 17044 | | |
| 17045 | | 9138 atoms, 9474 bonds, 6 pseudobonds, 1038 residues, 2 models selected |
| 17046 | | |
| 17047 | | > hide sel atoms |
| 17048 | | |
| 17049 | | > show sel cartoons |
| 17050 | | |
| 17051 | | > close #7 |
| 17052 | | |
| 17053 | | > show #!3 models |
| 17054 | | |
| 17055 | | > ui mousemode right "rotate selected models" |
| 17056 | | |
| 17057 | | > select add #3 |
| 17058 | | |
| 17059 | | 9138 atoms, 9474 bonds, 6 pseudobonds, 1038 residues, 4 models selected |
| 17060 | | |
| 17061 | | > select subtract #3 |
| 17062 | | |
| 17063 | | 9138 atoms, 9474 bonds, 6 pseudobonds, 1038 residues, 2 models selected |
| 17064 | | |
| 17065 | | > select add #3 |
| 17066 | | |
| 17067 | | 9138 atoms, 9474 bonds, 6 pseudobonds, 1038 residues, 4 models selected |
| 17068 | | |
| 17069 | | > select subtract #3 |
| 17070 | | |
| 17071 | | 9138 atoms, 9474 bonds, 6 pseudobonds, 1038 residues, 2 models selected |
| 17072 | | |
| 17073 | | > select add #3 |
| 17074 | | |
| 17075 | | 9138 atoms, 9474 bonds, 6 pseudobonds, 1038 residues, 4 models selected |
| 17076 | | |
| 17077 | | > select subtract #5 |
| 17078 | | |
| 17079 | | 2 models selected |
| 17080 | | |
| 17081 | | > select add #5 |
| 17082 | | |
| 17083 | | 9138 atoms, 9474 bonds, 6 pseudobonds, 1038 residues, 4 models selected |
| 17084 | | |
| 17085 | | > select subtract #5 |
| 17086 | | |
| 17087 | | 2 models selected |
| 17088 | | |
| 17089 | | > select subtract #3 |
| 17090 | | |
| 17091 | | Nothing selected |
| 17092 | | |
| 17093 | | > select add #5 |
| 17094 | | |
| 17095 | | 9138 atoms, 9474 bonds, 6 pseudobonds, 1038 residues, 2 models selected |
| 17096 | | |
| 17097 | | > ui mousemode right "rotate selected models" |
| 17098 | | |
| 17099 | | > view matrix models |
| 17100 | | > #5,-0.96358,0.1145,0.24166,267.87,0.086972,0.98875,-0.12169,6.9483,-0.25288,-0.09624,-0.9627,372.46 |
| 17101 | | |
| 17102 | | > ui mousemode right "translate selected models" |
| 17103 | | |
| 17104 | | > view matrix models |
| 17105 | | > #5,-0.96358,0.1145,0.24166,256.79,0.086972,0.98875,-0.12169,-28.917,-0.25288,-0.09624,-0.9627,365.03 |
| 17106 | | |
| 17107 | | > view matrix models |
| 17108 | | > #5,-0.96358,0.1145,0.24166,242.84,0.086972,0.98875,-0.12169,-26.393,-0.25288,-0.09624,-0.9627,366.4 |
| 17109 | | |
| 17110 | | > hide #!3 models |
| 17111 | | |
| 17112 | | > show #!2 models |
| 17113 | | |
| 17114 | | > hide #!2 models |
| 17115 | | |
| 17116 | | > show #!20 models |
| 17117 | | |
| 17118 | | > view matrix models |
| 17119 | | > #5,-0.96358,0.1145,0.24166,237.12,0.086972,0.98875,-0.12169,-24.387,-0.25288,-0.09624,-0.9627,367.88 |
| 17120 | | |
| 17121 | | > ui mousemode right "rotate selected models" |
| 17122 | | |
| 17123 | | > view matrix models |
| 17124 | | > #5,-0.79417,0.01023,0.60761,167.71,-0.04077,0.99671,-0.070069,-12.799,-0.60633,-0.080419,-0.79114,396.37 |
| 17125 | | |
| 17126 | | > view matrix models |
| 17127 | | > #5,-0.72493,-0.66024,0.19636,333.54,-0.49714,0.6988,0.51432,18.728,-0.47679,0.27523,-0.83481,322.79 |
| 17128 | | |
| 17129 | | > view matrix models |
| 17130 | | > #5,-0.59238,-0.79109,0.15252,340.33,-0.79422,0.6052,0.054284,157.27,-0.13525,-0.088977,-0.98681,351.03 |
| 17131 | | |
| 17132 | | > view matrix models |
| 17133 | | > #5,-0.12581,-0.9832,-0.13226,340.51,-0.95848,0.086078,0.27188,235.9,-0.25592,0.16097,-0.9532,324.12 |
| 17134 | | |
| 17135 | | > view matrix models |
| 17136 | | > #5,0.17479,-0.98339,0.048893,261.67,-0.96772,-0.18074,-0.17566,353.48,0.18158,-0.016611,-0.98324,285.89 |
| 17137 | | |
| 17138 | | > view matrix models |
| 17139 | | > #5,0.15462,-0.96258,-0.22257,305.06,-0.96174,-0.19821,0.18914,296.94,-0.22617,0.18481,-0.9564,315.74 |
| 17140 | | |
| 17141 | | > ui mousemode right "translate selected models" |
| 17142 | | |
| 17143 | | > view matrix models |
| 17144 | | > #5,0.15462,-0.96258,-0.22257,305.73,-0.96174,-0.19821,0.18914,294.39,-0.22617,0.18481,-0.9564,312.68 |
| 17145 | | |
| 17146 | | > view matrix models |
| 17147 | | > #5,0.15462,-0.96258,-0.22257,303.9,-0.96174,-0.19821,0.18914,302.4,-0.22617,0.18481,-0.9564,307.25 |
| 17148 | | |
| 17149 | | > ui mousemode right "rotate selected models" |
| 17150 | | |
| 17151 | | > view matrix models |
| 17152 | | > #5,0.36632,-0.92449,-0.10553,243.71,-0.93047,-0.36463,-0.035584,360.88,-0.0055839,0.11123,-0.99378,288.89 |
| 17153 | | |
| 17154 | | > ui tool show "Fit in Map" |
| 17155 | | |
| 17156 | | > fitmap #5 inMap #3 |
| 17157 | | |
| 17158 | | Fit molecule 231031_From197_CBX_Re_real_space_refined_199.pdb (#5) to map |
| 17159 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) using 9138 atoms |
| 17160 | | average map value = 0.1236, steps = 96 |
| 17161 | | shifted from previous position = 4.87 |
| 17162 | | rotated from previous position = 10 degrees |
| 17163 | | atoms outside contour = 3321, contour level = 0.091964 |
| 17164 | | |
| 17165 | | Position of 231031_From197_CBX_Re_real_space_refined_199.pdb (#5) relative to |
| 17166 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#3) coordinates: |
| 17167 | | Matrix rotation and translation |
| 17168 | | -0.99999977 0.00060890 0.00030273 331.82330838 |
| 17169 | | -0.00060883 -0.99999979 0.00021698 332.09983698 |
| 17170 | | 0.00030286 0.00021679 0.99999993 -0.13959914 |
| 17171 | | Axis -0.00015151 -0.00010807 -0.99999998 |
| 17172 | | Axis point 165.96221555 165.99941734 0.00000000 |
| 17173 | | Rotation angle (degrees) 179.96511475 |
| 17174 | | Shift along axis 0.05343415 |
| 17175 | | |
| 17176 | | |
| 17177 | | > select clear |
| 17178 | | |
| 17179 | | > hide #!5 models |
| 17180 | | |
| 17181 | | > show #!4 models |
| 17182 | | |
| 17183 | | > hide #!4 models |
| 17184 | | |
| 17185 | | > show #!4 models |
| 17186 | | |
| 17187 | | > hide #!4 models |
| 17188 | | |
| 17189 | | > show #!5 models |
| 17190 | | |
| 17191 | | > hide #!5 models |
| 17192 | | |
| 17193 | | > show #!5 models |
| 17194 | | |
| 17195 | | > hide #!20 models |
| 17196 | | |
| 17197 | | > show #!3 models |
| 17198 | | |
| 17199 | | > select |
| 17200 | | > ::name="6OU"::name="CBO"::name="CLR"::name="MC3"::name="PTY"::name="Y01" |
| 17201 | | |
| 17202 | | 8340 atoms, 8370 bonds, 180 residues, 4 models selected |
| 17203 | | |
| 17204 | | > show sel atoms |
| 17205 | | |
| 17206 | | > select ::name="CBO" |
| 17207 | | |
| 17208 | | 738 atoms, 810 bonds, 18 residues, 1 model selected |
| 17209 | | |
| 17210 | | > color sel green |
| 17211 | | |
| 17212 | | > color sel byhetero |
| 17213 | | |
| 17214 | | > hide #!3 models |
| 17215 | | |
| 17216 | | > select #5:155-140 |
| 17217 | | |
| 17218 | | Nothing selected |
| 17219 | | |
| 17220 | | > select #5:140-155 |
| 17221 | | |
| 17222 | | 324 atoms, 324 bonds, 42 residues, 1 model selected |
| 17223 | | |
| 17224 | | > ui tool show "Selection Inspector" |
| 17225 | | |
| 17226 | | > setattr sel r ss_type 0 |
| 17227 | | |
| 17228 | | Assigning ss_type attribute to 42 items |
| 17229 | | |
| 17230 | | > select clear |
| 17231 | | |
| 17232 | | > show #!2 models |
| 17233 | | |
| 17234 | | > hide #!2 models |
| 17235 | | |
| 17236 | | > show #!1 models |
| 17237 | | |
| 17238 | | > hide #!1 models |
| 17239 | | |
| 17240 | | > show #!4 models |
| 17241 | | |
| 17242 | | > hide #!4 models |
| 17243 | | |
| 17244 | | > show #!8 models |
| 17245 | | |
| 17246 | | > select #5:74-105 |
| 17247 | | |
| 17248 | | 1686 atoms, 1740 bonds, 192 residues, 1 model selected |
| 17249 | | |
| 17250 | | > ui tool show "Selection Inspector" |
| 17251 | | |
| 17252 | | > setattr sel r ss_type 1 |
| 17253 | | |
| 17254 | | Assigning ss_type attribute to 192 items |
| 17255 | | |
| 17256 | | > hide #!8 models |
| 17257 | | |
| 17258 | | > close #5 |
| 17259 | | |
| 17260 | | > show #!1 models |
| 17261 | | |
| 17262 | | > show #!2 models |
| 17263 | | |
| 17264 | | > show #!3 models |
| 17265 | | |
| 17266 | | > show #!4 models |
| 17267 | | |
| 17268 | | > hide #!4 models |
| 17269 | | |
| 17270 | | > select clear |
| 17271 | | |
| 17272 | | > open C:/Users/OJS/Downloads/cryosparc_P76_J149_007_volume_map_sharp.mrc |
| 17273 | | |
| 17274 | | Opened cryosparc_P76_J149_007_volume_map_sharp.mrc as #5, grid size |
| 17275 | | 400,400,400, pixel 0.848, shown at level 0.0458, step 2, values float32 |
| 17276 | | |
| 17277 | | > color #5 #ffaa7fff models |
| 17278 | | |
| 17279 | | > color #5 #00aa00ff models |
| 17280 | | |
| 17281 | | > volume #5 step 1 |
| 17282 | | |
| 17283 | | > volume #5 level 0.09652 |
| 17284 | | |
| 17285 | | > fitmap #5 inMap #4 |
| 17286 | | |
| 17287 | | Fit map cryosparc_P76_J149_007_volume_map_sharp.mrc in map |
| 17288 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 98567 points |
| 17289 | | correlation = 0.2527, correlation about mean = 0.02241, overlap = 561.2 |
| 17290 | | steps = 364, shift = 21, angle = 24.2 degrees |
| 17291 | | |
| 17292 | | Position of cryosparc_P76_J149_007_volume_map_sharp.mrc (#5) relative to |
| 17293 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 17294 | | Matrix rotation and translation |
| 17295 | | 0.95141879 -0.22381088 0.21144970 6.57927021 |
| 17296 | | 0.15530454 0.94182046 0.29808510 -76.16410678 |
| 17297 | | -0.26586234 -0.25076466 0.93082453 80.09211685 |
| 17298 | | Axis -0.66913428 0.58191854 0.46220140 |
| 17299 | | Axis point 0.00000000 262.64343872 283.92297177 |
| 17300 | | Rotation angle (degrees) 24.21232904 |
| 17301 | | Shift along axis -11.70503260 |
| 17302 | | |
| 17303 | | |
| 17304 | | > ui mousemode right "translate selected models" |
| 17305 | | |
| 17306 | | > select add #5 |
| 17307 | | |
| 17308 | | 2 models selected |
| 17309 | | |
| 17310 | | > view matrix models |
| 17311 | | > #5,0.95142,-0.22381,0.21145,-33.093,0.1553,0.94182,0.29809,-87.97,-0.26586,-0.25076,0.93082,62.631 |
| 17312 | | |
| 17313 | | > view matrix models |
| 17314 | | > #5,0.95142,-0.22381,0.21145,-32.402,0.1553,0.94182,0.29809,-104.64,-0.26586,-0.25076,0.93082,59.949 |
| 17315 | | |
| 17316 | | > view matrix models |
| 17317 | | > #5,0.95142,-0.22381,0.21145,-32.306,0.1553,0.94182,0.29809,-110.43,-0.26586,-0.25076,0.93082,62.718 |
| 17318 | | |
| 17319 | | > fitmap #5 inMap #4 |
| 17320 | | |
| 17321 | | Fit map cryosparc_P76_J149_007_volume_map_sharp.mrc in map |
| 17322 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 98567 points |
| 17323 | | correlation = 0.2402, correlation about mean = 0.01853, overlap = 958 |
| 17324 | | steps = 120, shift = 3.33, angle = 7.92 degrees |
| 17325 | | |
| 17326 | | Position of cryosparc_P76_J149_007_volume_map_sharp.mrc (#5) relative to |
| 17327 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 17328 | | Matrix rotation and translation |
| 17329 | | 0.95532275 -0.26807002 0.12448660 -7.95147118 |
| 17330 | | 0.23765672 0.94709986 0.21568760 -108.94953107 |
| 17331 | | -0.17572062 -0.17646619 0.96849468 30.26096746 |
| 17332 | | Axis -0.55477314 0.42469793 0.71544282 |
| 17333 | | Axis point 391.86841253 -136.79522984 -0.00000000 |
| 17334 | | Rotation angle (degrees) 20.69763127 |
| 17335 | | Shift along axis -20.20938612 |
| 17336 | | |
| 17337 | | |
| 17338 | | > ui mousemode right "rotate selected models" |
| 17339 | | |
| 17340 | | > view matrix models |
| 17341 | | > #5,0.60862,-0.79271,0.034489,155.48,0.77347,0.60242,0.19704,-138.12,-0.17698,-0.093249,0.97979,14.397 |
| 17342 | | |
| 17343 | | > fitmap #5 inMap #4 |
| 17344 | | |
| 17345 | | Fit map cryosparc_P76_J149_007_volume_map_sharp.mrc in map |
| 17346 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc using 98567 points |
| 17347 | | correlation = 0.5725, correlation about mean = 0.2811, overlap = 3552 |
| 17348 | | steps = 132, shift = 7.76, angle = 14.2 degrees |
| 17349 | | |
| 17350 | | Position of cryosparc_P76_J149_007_volume_map_sharp.mrc (#5) relative to |
| 17351 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 17352 | | Matrix rotation and translation |
| 17353 | | 0.71853405 -0.69549178 -0.00001732 131.77493541 |
| 17354 | | 0.69549178 0.71853405 0.00000754 -104.14010617 |
| 17355 | | 0.00000720 -0.00001747 1.00000000 -32.71666577 |
| 17356 | | Axis -0.00001798 -0.00001763 1.00000000 |
| 17357 | | Axis point 194.55102977 110.73438714 0.00000000 |
| 17358 | | Rotation angle (degrees) 44.06641900 |
| 17359 | | Shift along axis -32.71719860 |
| 17360 | | |
| 17361 | | |
| 17362 | | > select clear |
| 17363 | | |
| 17364 | | > hide #!5 models |
| 17365 | | |
| 17366 | | > show #!5 models |
| 17367 | | |
| 17368 | | > show #!4 models |
| 17369 | | |
| 17370 | | > select clear |
| 17371 | | |
| 17372 | | > transparency 30 |
| 17373 | | |
| 17374 | | > select clear |
| 17375 | | |
| 17376 | | [Repeated 1 time(s)] |
| 17377 | | |
| 17378 | | > hide #!5 models |
| 17379 | | |
| 17380 | | > hide #!4 models |
| 17381 | | |
| 17382 | | > hide #!3 models |
| 17383 | | |
| 17384 | | > hide #!2 models |
| 17385 | | |
| 17386 | | > show #!2 models |
| 17387 | | |
| 17388 | | > hide #!1 models |
| 17389 | | |
| 17390 | | > volume #2 level 0.1542 |
| 17391 | | |
| 17392 | | > volume #2 level 0.1007 |
| 17393 | | |
| 17394 | | > volume #2 level 0.1153 |
| 17395 | | |
| 17396 | | > show #!20 models |
| 17397 | | |
| 17398 | | > hide #!20 models |
| 17399 | | |
| 17400 | | > hide #!2 models |
| 17401 | | |
| 17402 | | > show #!20 models |
| 17403 | | |
| 17404 | | > show #!8 models |
| 17405 | | |
| 17406 | | > hide #!20 models |
| 17407 | | |
| 17408 | | > show #!4 models |
| 17409 | | |
| 17410 | | > hide #!4 models |
| 17411 | | |
| 17412 | | > show #!4 models |
| 17413 | | |
| 17414 | | > hide #!4 models |
| 17415 | | |
| 17416 | | > show #!2 models |
| 17417 | | |
| 17418 | | > hide #!2 models |
| 17419 | | |
| 17420 | | > show #!4 models |
| 17421 | | |
| 17422 | | > show #!2 models |
| 17423 | | |
| 17424 | | > show #!5 models |
| 17425 | | |
| 17426 | | > hide #!5 models |
| 17427 | | |
| 17428 | | > hide #!4 models |
| 17429 | | |
| 17430 | | > hide #!2 models |
| 17431 | | |
| 17432 | | > show #!4 models |
| 17433 | | |
| 17434 | | > show #!2 models |
| 17435 | | |
| 17436 | | > hide #!2 models |
| 17437 | | |
| 17438 | | > hide #!8 models |
| 17439 | | |
| 17440 | | > hide #!4 models |
| 17441 | | |
| 17442 | | > show #!4 models |
| 17443 | | |
| 17444 | | > show #!5 models |
| 17445 | | |
| 17446 | | > hide #!4 models |
| 17447 | | |
| 17448 | | > open |
| 17449 | | > C:/Users/OJS/Desktop/Phenix/230901_MBCD_Chol_N55H/RealSpaceRefine_43/231031_From42_100_real_space_refined_043.pdb |
| 17450 | | |
| 17451 | | Chain information for 231031_From42_100_real_space_refined_043.pdb #7 |
| 17452 | | --- |
| 17453 | | Chain | Description |
| 17454 | | A B C D E F | No description available |
| 17455 | | |
| 17456 | | |
| 17457 | | > save "C:/Users/OJS/OneDrive - |
| 17458 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 17459 | | |
| 17460 | | ——— End of log from Tue Oct 31 06:40:42 2023 ——— |
| 17461 | | |
| 17462 | | opened ChimeraX session |
| 17463 | | |
| 17464 | | > color #7 #00aa00ff |
| 17465 | | |
| 17466 | | > select add #7 |
| 17467 | | |
| 17468 | | 9840 atoms, 10116 bonds, 6 pseudobonds, 1194 residues, 2 models selected |
| 17469 | | |
| 17470 | | > hide sel atoms |
| 17471 | | |
| 17472 | | > show sel cartoons |
| 17473 | | |
| 17474 | | > ui mousemode right "translate selected models" |
| 17475 | | |
| 17476 | | > view matrix models #7,1,0,0,-15.314,0,1,0,-37.392,0,0,1,-28.401 |
| 17477 | | |
| 17478 | | > view matrix models #7,1,0,0,-29.441,0,1,0,-34.915,0,0,1,-37.309 |
| 17479 | | |
| 17480 | | > ui tool show "Fit in Map" |
| 17481 | | |
| 17482 | | > color #7 #00aa00ff |
| 17483 | | |
| 17484 | | > hide #!7 models |
| 17485 | | |
| 17486 | | > show #!6 models |
| 17487 | | |
| 17488 | | > hide #!6 models |
| 17489 | | |
| 17490 | | > show #!6 models |
| 17491 | | |
| 17492 | | > hide #!5 models |
| 17493 | | |
| 17494 | | > show #!5 models |
| 17495 | | |
| 17496 | | > show #!2 models |
| 17497 | | |
| 17498 | | > hide #!2 models |
| 17499 | | |
| 17500 | | > close #6 |
| 17501 | | |
| 17502 | | > show #!27 models |
| 17503 | | |
| 17504 | | > show #!7 models |
| 17505 | | |
| 17506 | | > hide #!7 models |
| 17507 | | |
| 17508 | | > show #!2 models |
| 17509 | | |
| 17510 | | > hide #!2 models |
| 17511 | | |
| 17512 | | > hide #!5 models |
| 17513 | | |
| 17514 | | > select subtract #7 |
| 17515 | | |
| 17516 | | Nothing selected |
| 17517 | | |
| 17518 | | > show #!1 models |
| 17519 | | |
| 17520 | | > select add #27 |
| 17521 | | |
| 17522 | | 24138 atoms, 24372 bonds, 6 pseudobonds, 1284 residues, 2 models selected |
| 17523 | | |
| 17524 | | > view matrix models |
| 17525 | | > #27,0.97738,-0.2115,3.8748e-05,34.388,-0.2115,-0.97738,-0.00036461,289.61,0.00011499,0.00034817,-1,243.17 |
| 17526 | | |
| 17527 | | > ui mousemode right "rotate selected models" |
| 17528 | | |
| 17529 | | > view matrix models |
| 17530 | | > #27,0.62638,-0.7794,-0.013527,165.93,0.77756,0.6235,0.081532,-85.658,-0.055112,-0.061588,0.99658,62.894 |
| 17531 | | |
| 17532 | | > fitmap #27 inMap #1 |
| 17533 | | |
| 17534 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 17535 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 24138 atoms |
| 17536 | | average map value = 0.07242, steps = 108 |
| 17537 | | shifted from previous position = 5.5 |
| 17538 | | rotated from previous position = 3.09 degrees |
| 17539 | | atoms outside contour = 20290, contour level = 0.18061 |
| 17540 | | |
| 17541 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 17542 | | to WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 17543 | | Matrix rotation and translation |
| 17544 | | -0.63556945 0.77192317 0.01364193 144.09097523 |
| 17545 | | 0.77190158 0.63501421 0.03041234 -44.09645037 |
| 17546 | | 0.01481317 0.02985938 -0.99944434 265.84326946 |
| 17547 | | Axis -0.42686646 -0.90416110 -0.01666544 |
| 17548 | | Axis point 82.40721600 0.00000000 133.35183837 |
| 17549 | | Rotation angle (degrees) 179.96288970 |
| 17550 | | Shift along axis -26.06770453 |
| 17551 | | |
| 17552 | | |
| 17553 | | > ui mousemode right "rotate selected models" |
| 17554 | | |
| 17555 | | > view matrix models |
| 17556 | | > #27,0.98398,-0.15717,-0.084117,31.663,0.16206,0.98526,0.054716,-43.53,0.074277,-0.067471,0.99495,41.871 |
| 17557 | | |
| 17558 | | > ui mousemode right "translate selected models" |
| 17559 | | |
| 17560 | | > view matrix models |
| 17561 | | > #27,0.98398,-0.15717,-0.084117,27.233,0.16206,0.98526,0.054716,-31.429,0.074277,-0.067471,0.99495,40.137 |
| 17562 | | |
| 17563 | | > fitmap #27 inMap #1 |
| 17564 | | |
| 17565 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 17566 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 24138 atoms |
| 17567 | | average map value = 0.07706, steps = 100 |
| 17568 | | shifted from previous position = 2.16 |
| 17569 | | rotated from previous position = 1.38 degrees |
| 17570 | | atoms outside contour = 19450, contour level = 0.18061 |
| 17571 | | |
| 17572 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 17573 | | to WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 17574 | | Matrix rotation and translation |
| 17575 | | -0.98243372 0.15393199 0.10549374 275.45113856 |
| 17576 | | 0.15956975 0.98605686 0.04721614 5.52601659 |
| 17577 | | -0.09675475 0.06322034 -0.99329840 278.16442569 |
| 17578 | | Axis 0.07885433 0.99649907 0.02777782 |
| 17579 | | Axis point 144.58226323 0.00000000 132.04468496 |
| 17580 | | Rotation angle (degrees) 174.17562571 |
| 17581 | | Shift along axis 34.95398635 |
| 17582 | | |
| 17583 | | |
| 17584 | | > fitmap #27 inMap #1 |
| 17585 | | |
| 17586 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 17587 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 24138 atoms |
| 17588 | | average map value = 0.07705, steps = 60 |
| 17589 | | shifted from previous position = 0.0133 |
| 17590 | | rotated from previous position = 0.0158 degrees |
| 17591 | | atoms outside contour = 19454, contour level = 0.18061 |
| 17592 | | |
| 17593 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 17594 | | to WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 17595 | | Matrix rotation and translation |
| 17596 | | -0.98240200 0.15404638 0.10562214 275.42604932 |
| 17597 | | 0.15971223 0.98602422 0.04741572 5.48941627 |
| 17598 | | -0.09684176 0.06345044 -0.99327525 278.15199708 |
| 17599 | | Axis 0.07892003 0.99649084 0.02788628 |
| 17600 | | Axis point 144.57825473 0.00000000 132.03183308 |
| 17601 | | Rotation angle (degrees) 174.16935275 |
| 17602 | | Shift along axis 34.96341000 |
| 17603 | | |
| 17604 | | |
| 17605 | | > fitmap #27 inMap #1 |
| 17606 | | |
| 17607 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 17608 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 24138 atoms |
| 17609 | | average map value = 0.07706, steps = 40 |
| 17610 | | shifted from previous position = 0.0115 |
| 17611 | | rotated from previous position = 0.00694 degrees |
| 17612 | | atoms outside contour = 19458, contour level = 0.18061 |
| 17613 | | |
| 17614 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 17615 | | to WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 17616 | | Matrix rotation and translation |
| 17617 | | -0.98241835 0.15395951 0.10559672 275.43436205 |
| 17618 | | 0.15961670 0.98604300 0.04734686 5.50657099 |
| 17619 | | -0.09683341 0.06336942 -0.99328124 278.15557799 |
| 17620 | | Axis 0.07887370 0.99649556 0.02784843 |
| 17621 | | Axis point 144.58073530 0.00000000 132.03445805 |
| 17622 | | Rotation angle (degrees) 174.17035624 |
| 17623 | | Shift along axis 34.95799743 |
| 17624 | | |
| 17625 | | |
| 17626 | | > ui mousemode right "rotate selected models" |
| 17627 | | |
| 17628 | | > view matrix models |
| 17629 | | > #27,0.84569,-0.53058,-0.057287,97.825,0.53246,0.84612,0.023855,-59.229,0.035814,-0.050677,0.99807,42.817 |
| 17630 | | |
| 17631 | | > view matrix models |
| 17632 | | > #27,0.85363,-0.52067,-0.015064,91.117,0.52072,0.85228,0.049775,-61.007,-0.013078,-0.050334,0.99865,49.67 |
| 17633 | | |
| 17634 | | > view matrix models |
| 17635 | | > #27,0.89405,-0.44792,-0.0058662,74.171,0.44744,0.8923,0.059964,-57.298,-0.021625,-0.056236,0.99818,51.764 |
| 17636 | | |
| 17637 | | > view matrix models |
| 17638 | | > #27,0.87229,-0.48887,-0.011097,83.573,0.4887,0.87075,0.054382,-59.541,-0.016923,-0.052859,0.99846,50.592 |
| 17639 | | |
| 17640 | | > fitmap #27 inMap #1 |
| 17641 | | |
| 17642 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 17643 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 24138 atoms |
| 17644 | | average map value = 0.2203, steps = 80 |
| 17645 | | shifted from previous position = 3.42 |
| 17646 | | rotated from previous position = 7.17 degrees |
| 17647 | | atoms outside contour = 12646, contour level = 0.18061 |
| 17648 | | |
| 17649 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 17650 | | to WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 17651 | | Matrix rotation and translation |
| 17652 | | -0.91978532 0.39242192 0.00008501 244.35224554 |
| 17653 | | 0.39242191 0.91978518 0.00052114 -16.45218247 |
| 17654 | | 0.00012631 0.00051269 -0.99999986 272.60480377 |
| 17655 | | Axis -0.20026366 -0.97974201 -0.00025195 |
| 17656 | | Axis point 123.85610658 0.00000000 136.30579608 |
| 17657 | | Rotation angle (degrees) 179.99879237 |
| 17658 | | Shift along axis -32.88466289 |
| 17659 | | |
| 17660 | | |
| 17661 | | > fitmap #27 inMap #1 |
| 17662 | | |
| 17663 | | Fit molecule Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) to map |
| 17664 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 24138 atoms |
| 17665 | | average map value = 0.2203, steps = 24 |
| 17666 | | shifted from previous position = 0.00208 |
| 17667 | | rotated from previous position = 0.0043 degrees |
| 17668 | | atoms outside contour = 12641, contour level = 0.18061 |
| 17669 | | |
| 17670 | | Position of Cx43-nano-pope-chs-pH8-rs37-final-for-revision.pdb (#27) relative |
| 17671 | | to WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 17672 | | Matrix rotation and translation |
| 17673 | | -0.91981231 0.39235866 0.00005484 244.36904832 |
| 17674 | | 0.39235863 0.91981218 0.00052031 -16.44875633 |
| 17675 | | 0.00015370 0.00050010 -0.99999987 272.60239821 |
| 17676 | | Axis -0.20023259 -0.97974836 -0.00025543 |
| 17677 | | Axis point 123.86184296 0.00000000 136.30640440 |
| 17678 | | Rotation angle (degrees) 179.99710934 |
| 17679 | | Shift along axis -32.88463530 |
| 17680 | | |
| 17681 | | |
| 17682 | | > hide #!1 models |
| 17683 | | |
| 17684 | | > select clear |
| 17685 | | |
| 17686 | | > select #27:185,68,189 |
| 17687 | | |
| 17688 | | 402 atoms, 390 bonds, 18 residues, 1 model selected |
| 17689 | | |
| 17690 | | > show sel atoms |
| 17691 | | |
| 17692 | | > select #27/b,c,e,f |
| 17693 | | |
| 17694 | | 16092 atoms, 16248 bonds, 4 pseudobonds, 856 residues, 2 models selected |
| 17695 | | |
| 17696 | | > hide sel ribbons |
| 17697 | | |
| 17698 | | > hide sel atoms |
| 17699 | | |
| 17700 | | > select clear |
| 17701 | | |
| 17702 | | > hide #!27 models |
| 17703 | | |
| 17704 | | > open |
| 17705 | | > C:/Users/OJS/Desktop/Phenix/220302_Cx43_N55H_CBX/RealSpaceRefine_201/231031_From199_real_space_refined_201.pdb |
| 17706 | | |
| 17707 | | Chain information for 231031_From199_real_space_refined_201.pdb #6 |
| 17708 | | --- |
| 17709 | | Chain | Description |
| 17710 | | A B C D E F | No description available |
| 17711 | | |
| 17712 | | |
| 17713 | | > color #6 #aa55ffff |
| 17714 | | |
| 17715 | | > select add #6 |
| 17716 | | |
| 17717 | | 9138 atoms, 9474 bonds, 6 pseudobonds, 1038 residues, 2 models selected |
| 17718 | | |
| 17719 | | > hide sel atoms |
| 17720 | | |
| 17721 | | > hide sel cartoons |
| 17722 | | |
| 17723 | | > show sel cartoons |
| 17724 | | |
| 17725 | | > select #6:74-110 |
| 17726 | | |
| 17727 | | 1686 atoms, 1740 bonds, 192 residues, 1 model selected |
| 17728 | | |
| 17729 | | > lighting full |
| 17730 | | |
| 17731 | | > ui tool show "Selection Inspector" |
| 17732 | | |
| 17733 | | > setattr sel r ss_type 1 |
| 17734 | | |
| 17735 | | Assigning ss_type attribute to 192 items |
| 17736 | | |
| 17737 | | > close #6 |
| 17738 | | |
| 17739 | | > show #!7 models |
| 17740 | | |
| 17741 | | > open |
| 17742 | | > C:/Users/OJS/Desktop/Phenix/230320_Cx43_WT_POPE_PIP2/RealSpaceRefine_104/231026_From103_real_space_refined_104.pdb |
| 17743 | | |
| 17744 | | Chain information for 231026_From103_real_space_refined_104.pdb #6 |
| 17745 | | --- |
| 17746 | | Chain | Description |
| 17747 | | A B C D E F | No description available |
| 17748 | | |
| 17749 | | |
| 17750 | | > select add #6 |
| 17751 | | |
| 17752 | | 11616 atoms, 11814 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 17753 | | |
| 17754 | | > color #6 #ff557fff |
| 17755 | | |
| 17756 | | > hide sel atoms |
| 17757 | | |
| 17758 | | > show sel cartoons |
| 17759 | | |
| 17760 | | > color #6 #ff557fff |
| 17761 | | |
| 17762 | | > rename #7 id #10 |
| 17763 | | |
| 17764 | | > rename #20 id #7 |
| 17765 | | |
| 17766 | | > rename #8 id #9 |
| 17767 | | |
| 17768 | | > select clear |
| 17769 | | |
| 17770 | | > show #!1 models |
| 17771 | | |
| 17772 | | > hide #!10 models |
| 17773 | | |
| 17774 | | > ui tool show "Selection Inspector" |
| 17775 | | |
| 17776 | | > select add #6 |
| 17777 | | |
| 17778 | | 11616 atoms, 11814 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 17779 | | |
| 17780 | | > view matrix models |
| 17781 | | > #6,-0.47714,0.87235,0.10649,84.213,0.87429,0.48348,-0.043261,-53.22,-0.089226,0.072465,-0.99337,346.53 |
| 17782 | | |
| 17783 | | > ui mousemode right "translate selected models" |
| 17784 | | |
| 17785 | | > view matrix models |
| 17786 | | > #6,-0.47714,0.87235,0.10649,60.152,0.87429,0.48348,-0.043261,-94.031,-0.089226,0.072465,-0.99337,319.48 |
| 17787 | | |
| 17788 | | > view matrix models |
| 17789 | | > #6,-0.47714,0.87235,0.10649,53.576,0.87429,0.48348,-0.043261,-88.899,-0.089226,0.072465,-0.99337,314.23 |
| 17790 | | |
| 17791 | | > fitmap #6 inMap #1 |
| 17792 | | |
| 17793 | | Fit molecule 231026_From103_real_space_refined_104.pdb (#6) to map |
| 17794 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11616 atoms |
| 17795 | | average map value = 0.3596, steps = 80 |
| 17796 | | shifted from previous position = 4.03 |
| 17797 | | rotated from previous position = 6.66 degrees |
| 17798 | | atoms outside contour = 2608, contour level = 0.18061 |
| 17799 | | |
| 17800 | | Position of 231026_From103_real_space_refined_104.pdb (#6) relative to |
| 17801 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 17802 | | Matrix rotation and translation |
| 17803 | | 0.50016724 -0.86592883 0.00006158 231.63096687 |
| 17804 | | 0.86592883 0.50016724 -0.00001211 -62.09368508 |
| 17805 | | -0.00002032 0.00005938 1.00000000 -0.00634146 |
| 17806 | | Axis 0.00004128 0.00004729 1.00000000 |
| 17807 | | Axis point 169.60218583 169.59619934 0.00000000 |
| 17808 | | Rotation angle (degrees) 59.98893512 |
| 17809 | | Shift along axis 0.00028380 |
| 17810 | | |
| 17811 | | |
| 17812 | | > fitmap #6 inMap #1 |
| 17813 | | |
| 17814 | | Fit molecule 231026_From103_real_space_refined_104.pdb (#6) to map |
| 17815 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11616 atoms |
| 17816 | | average map value = 0.3596, steps = 24 |
| 17817 | | shifted from previous position = 0.000245 |
| 17818 | | rotated from previous position = 0.0022 degrees |
| 17819 | | atoms outside contour = 2612, contour level = 0.18061 |
| 17820 | | |
| 17821 | | Position of 231026_From103_real_space_refined_104.pdb (#6) relative to |
| 17822 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 17823 | | Matrix rotation and translation |
| 17824 | | 0.50015622 -0.86593519 0.00006368 231.63358895 |
| 17825 | | 0.86593519 0.50015622 -0.00004822 -62.08698308 |
| 17826 | | 0.00000991 0.00007926 1.00000000 -0.01491191 |
| 17827 | | Axis 0.00007361 0.00003105 1.00000000 |
| 17828 | | Axis point 169.59690203 169.59887491 0.00000000 |
| 17829 | | Rotation angle (degrees) 59.98966385 |
| 17830 | | Shift along axis 0.00021130 |
| 17831 | | |
| 17832 | | |
| 17833 | | > select clear |
| 17834 | | |
| 17835 | | > show #!2 models |
| 17836 | | |
| 17837 | | > hide #!2 models |
| 17838 | | |
| 17839 | | > show #!3 models |
| 17840 | | |
| 17841 | | > hide #!3 models |
| 17842 | | |
| 17843 | | > show #!7 models |
| 17844 | | |
| 17845 | | > hide #!1 models |
| 17846 | | |
| 17847 | | > view orient |
| 17848 | | |
| 17849 | | > turn x 90 |
| 17850 | | |
| 17851 | | [Repeated 2 time(s)] |
| 17852 | | |
| 17853 | | > hide #!7 models |
| 17854 | | |
| 17855 | | > show #!7 models |
| 17856 | | |
| 17857 | | > ui mousemode right "rotate selected models" |
| 17858 | | |
| 17859 | | > select add #7 |
| 17860 | | |
| 17861 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 17862 | | |
| 17863 | | > view matrix models |
| 17864 | | > #7,0.89733,-0.34666,-0.27317,90.911,0.35835,0.93356,-0.007586,-77.497,0.25765,-0.091084,0.96193,-45.715 |
| 17865 | | |
| 17866 | | > view matrix models |
| 17867 | | > #7,0.59925,-0.78087,0.1765,135.69,0.78974,0.61273,0.029557,-102.19,-0.13123,0.12167,0.98386,-20.222 |
| 17868 | | |
| 17869 | | > view matrix models |
| 17870 | | > #7,0.50313,-0.8642,-0.0037141,196.25,0.86301,0.5022,0.054821,-100.32,-0.045511,-0.030787,0.99849,-11.64 |
| 17871 | | |
| 17872 | | > view matrix models |
| 17873 | | > #7,0.41229,-0.90877,0.064485,207.08,0.90887,0.41517,0.039838,-90.928,-0.062976,0.042184,0.99712,-20.621 |
| 17874 | | |
| 17875 | | > fitmap #7 inMap #2 |
| 17876 | | |
| 17877 | | Fit molecule 231030_N55H_Chol_193 (#7) to map |
| 17878 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 17879 | | average map value = 0.2281, steps = 68 |
| 17880 | | shifted from previous position = 0.0364 |
| 17881 | | rotated from previous position = 5.45 degrees |
| 17882 | | atoms outside contour = 3303, contour level = 0.11528 |
| 17883 | | |
| 17884 | | Position of 231030_N55H_Chol_193 (#7) relative to |
| 17885 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 17886 | | Matrix rotation and translation |
| 17887 | | 0.49980992 -0.86613510 0.00014674 226.77994896 |
| 17888 | | 0.86613511 0.49980988 -0.00022848 -60.69966605 |
| 17889 | | 0.00012456 0.00024129 0.99999996 -0.05309330 |
| 17890 | | Axis 0.00027119 0.00001280 0.99999996 |
| 17891 | | Axis point 165.94411476 165.99759826 0.00000000 |
| 17892 | | Rotation angle (degrees) 60.01257709 |
| 17893 | | Shift along axis 0.00763043 |
| 17894 | | |
| 17895 | | |
| 17896 | | > select clear |
| 17897 | | |
| 17898 | | > show #!9 models |
| 17899 | | |
| 17900 | | > hide #!7 models |
| 17901 | | |
| 17902 | | > hide #!6 models |
| 17903 | | |
| 17904 | | > show #!7 models |
| 17905 | | |
| 17906 | | > show #!6 models |
| 17907 | | |
| 17908 | | > ui mousemode right "rotate selected models" |
| 17909 | | |
| 17910 | | > select add #9 |
| 17911 | | |
| 17912 | | 11646 atoms, 11886 bonds, 6 pseudobonds, 1230 residues, 2 models selected |
| 17913 | | |
| 17914 | | > view matrix models |
| 17915 | | > #9,0.92071,-0.25041,0.29931,2.26,0.27164,0.96191,-0.030827,-27.313,-0.28019,0.10969,0.95366,29.71 |
| 17916 | | |
| 17917 | | > view matrix models |
| 17918 | | > #9,0.70439,-0.68597,-0.18243,159.07,0.70888,0.69303,0.13119,-73.147,0.036434,-0.22173,0.97443,28.77 |
| 17919 | | |
| 17920 | | > view matrix models |
| 17921 | | > #9,0.53867,-0.84248,0.0076256,175.82,0.84247,0.53852,-0.015423,-49.505,0.0088871,0.014732,0.99985,-3.1837 |
| 17922 | | |
| 17923 | | > fitmap #9 inMap #4 |
| 17924 | | |
| 17925 | | Fit molecule 231026_N55H_MBCD_37_wo_water.pdb (#9) to map |
| 17926 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) using 11646 atoms |
| 17927 | | average map value = 0.5225, steps = 40 |
| 17928 | | shifted from previous position = 0.022 |
| 17929 | | rotated from previous position = 2.78 degrees |
| 17930 | | atoms outside contour = 1116, contour level = 0.14776 |
| 17931 | | |
| 17932 | | Position of 231026_N55H_MBCD_37_wo_water.pdb (#9) relative to |
| 17933 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#4) coordinates: |
| 17934 | | Matrix rotation and translation |
| 17935 | | 0.49997719 -0.86603857 -0.00008250 185.35752684 |
| 17936 | | 0.86603858 0.49997718 0.00009293 -49.67309697 |
| 17937 | | -0.00003923 -0.00011791 0.99999999 0.02568620 |
| 17938 | | Axis -0.00012172 -0.00002498 0.99999999 |
| 17939 | | Axis point 135.69562015 135.68289622 0.00000000 |
| 17940 | | Rotation angle (degrees) 60.00150983 |
| 17941 | | Shift along axis 0.00436499 |
| 17942 | | |
| 17943 | | |
| 17944 | | > select clear |
| 17945 | | |
| 17946 | | > show #!10 models |
| 17947 | | |
| 17948 | | > hide #!9 models |
| 17949 | | |
| 17950 | | > hide #!7 models |
| 17951 | | |
| 17952 | | > ui mousemode right "rotate selected models" |
| 17953 | | |
| 17954 | | > select add #10 |
| 17955 | | |
| 17956 | | 9840 atoms, 10116 bonds, 6 pseudobonds, 1194 residues, 2 models selected |
| 17957 | | |
| 17958 | | > view matrix models |
| 17959 | | > #10,0.91312,-0.37299,0.1646,19.791,0.36366,0.92767,0.084727,-99.166,-0.18429,-0.017509,0.98272,-0.045392 |
| 17960 | | |
| 17961 | | > view matrix models |
| 17962 | | > #10,0.90753,-0.4167,0.05243,47.75,0.40949,0.90567,0.10992,-107.62,-0.093288,-0.078287,0.99256,-6.9022 |
| 17963 | | |
| 17964 | | > view matrix models |
| 17965 | | > #10,0.87796,-0.46757,0.10283,52.59,0.4643,0.88396,0.055205,-103.67,-0.11671,-0.00072516,0.99317,-16.187 |
| 17966 | | |
| 17967 | | > view matrix models |
| 17968 | | > #10,0.76831,-0.63653,-0.067266,129.57,0.63983,0.76087,0.10812,-121.84,-0.017639,-0.12611,0.99186,-11.509 |
| 17969 | | |
| 17970 | | > view matrix models |
| 17971 | | > #10,0.78353,-0.61297,-0.10179,129.02,0.62126,0.77571,0.11092,-121.69,0.010971,-0.15014,0.9886,-11.719 |
| 17972 | | |
| 17973 | | > fitmap #10 inMap #5 |
| 17974 | | |
| 17975 | | Fit molecule 231031_From42_100_real_space_refined_043.pdb (#10) to map |
| 17976 | | cryosparc_P76_J149_007_volume_map_sharp.mrc (#5) using 9840 atoms |
| 17977 | | average map value = 0.1163, steps = 108 |
| 17978 | | shifted from previous position = 6.36 |
| 17979 | | rotated from previous position = 10.4 degrees |
| 17980 | | atoms outside contour = 3737, contour level = 0.096521 |
| 17981 | | |
| 17982 | | Position of 231031_From42_100_real_space_refined_043.pdb (#10) relative to |
| 17983 | | cryosparc_P76_J149_007_volume_map_sharp.mrc (#5) coordinates: |
| 17984 | | Matrix rotation and translation |
| 17985 | | 0.99999952 0.00037653 0.00090192 -0.26705915 |
| 17986 | | -0.00037607 0.99999980 -0.00050736 0.16111479 |
| 17987 | | -0.00090211 0.00050702 0.99999946 0.03662488 |
| 17988 | | Axis 0.46061308 0.81917577 -0.34174063 |
| 17989 | | Axis point 39.08113840 0.00000000 294.31032895 |
| 17990 | | Rotation angle (degrees) 0.06308991 |
| 17991 | | Shift along axis -0.00354582 |
| 17992 | | |
| 17993 | | |
| 17994 | | > fitmap #10 inMap #5 |
| 17995 | | |
| 17996 | | Fit molecule 231031_From42_100_real_space_refined_043.pdb (#10) to map |
| 17997 | | cryosparc_P76_J149_007_volume_map_sharp.mrc (#5) using 9840 atoms |
| 17998 | | average map value = 0.1163, steps = 28 |
| 17999 | | shifted from previous position = 0.0163 |
| 18000 | | rotated from previous position = 0.00457 degrees |
| 18001 | | atoms outside contour = 3729, contour level = 0.096521 |
| 18002 | | |
| 18003 | | Position of 231031_From42_100_real_space_refined_043.pdb (#10) relative to |
| 18004 | | cryosparc_P76_J149_007_volume_map_sharp.mrc (#5) coordinates: |
| 18005 | | Matrix rotation and translation |
| 18006 | | 0.99999958 0.00036020 0.00084182 -0.25183489 |
| 18007 | | -0.00035974 0.99999978 -0.00055715 0.16397195 |
| 18008 | | -0.00084202 0.00055684 0.99999949 0.00211135 |
| 18009 | | Axis 0.51970540 0.78555578 -0.33586963 |
| 18010 | | Axis point 1.21859449 0.00000000 297.43878773 |
| 18011 | | Rotation angle (degrees) 0.06140700 |
| 18012 | | Shift along axis -0.00277997 |
| 18013 | | |
| 18014 | | |
| 18015 | | > select clear |
| 18016 | | |
| 18017 | | > hide #!10 models |
| 18018 | | |
| 18019 | | > hide #!6 models |
| 18020 | | |
| 18021 | | > show #!6 models |
| 18022 | | |
| 18023 | | > show #!7 models |
| 18024 | | |
| 18025 | | > save "C:/Users/OJS/OneDrive - |
| 18026 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 18027 | | |
| 18028 | | > select ::name="PIO" |
| 18029 | | |
| 18030 | | 258 atoms, 258 bonds, 6 residues, 1 model selected |
| 18031 | | |
| 18032 | | > show sel atoms |
| 18033 | | |
| 18034 | | > color sel green |
| 18035 | | |
| 18036 | | > select clear |
| 18037 | | |
| 18038 | | > select |
| 18039 | | |
| 18040 | | 67752 atoms, 69024 bonds, 30 pseudobonds, 6162 residues, 20 models selected |
| 18041 | | |
| 18042 | | > ui tool show "Selection Inspector" |
| 18043 | | |
| 18044 | | > setattr =sel p display true |
| 18045 | | |
| 18046 | | Assigning display attribute to 30 items |
| 18047 | | |
| 18048 | | > setattr =sel p display false |
| 18049 | | |
| 18050 | | Assigning display attribute to 30 items |
| 18051 | | |
| 18052 | | > size =sel stickRadius 0.3 |
| 18053 | | |
| 18054 | | Changed 69024 bond radii |
| 18055 | | |
| 18056 | | > select clear |
| 18057 | | |
| 18058 | | > hide #!7 models |
| 18059 | | |
| 18060 | | > select |
| 18061 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 18062 | | |
| 18063 | | 9756 atoms, 9630 bonds, 252 residues, 5 models selected |
| 18064 | | |
| 18065 | | > show sel atoms |
| 18066 | | |
| 18067 | | > select ::name="MC3" |
| 18068 | | |
| 18069 | | 3456 atoms, 3336 bonds, 120 residues, 2 models selected |
| 18070 | | |
| 18071 | | > color sel gray |
| 18072 | | |
| 18073 | | > select ::name="6OU" |
| 18074 | | |
| 18075 | | 2940 atoms, 2880 bonds, 60 residues, 3 models selected |
| 18076 | | |
| 18077 | | > color sel gray |
| 18078 | | |
| 18079 | | > select ::name="PTY" |
| 18080 | | |
| 18081 | | 1590 atoms, 1554 bonds, 36 residues, 4 models selected |
| 18082 | | |
| 18083 | | > color sel gray |
| 18084 | | |
| 18085 | | > select |
| 18086 | | |
| 18087 | | 67752 atoms, 69024 bonds, 30 pseudobonds, 6162 residues, 20 models selected |
| 18088 | | |
| 18089 | | > color sel byhetero |
| 18090 | | |
| 18091 | | > select |
| 18092 | | |
| 18093 | | 67752 atoms, 69024 bonds, 30 pseudobonds, 6162 residues, 20 models selected |
| 18094 | | |
| 18095 | | > style sel stick |
| 18096 | | |
| 18097 | | Changed 67752 atom styles |
| 18098 | | |
| 18099 | | > select clear |
| 18100 | | |
| 18101 | | > save "C:/Users/OJS/OneDrive - |
| 18102 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 18103 | | |
| 18104 | | > show #!7 models |
| 18105 | | |
| 18106 | | > morph #6,7 |
| 18107 | | |
| 18108 | | Computed 51 frame morph #8 |
| 18109 | | |
| 18110 | | > coordset #8 1,51 |
| 18111 | | |
| 18112 | | > show #!2 models |
| 18113 | | |
| 18114 | | > hide #!2 models |
| 18115 | | |
| 18116 | | > morph #7,9 |
| 18117 | | |
| 18118 | | Computed 51 frame morph #11 |
| 18119 | | |
| 18120 | | > coordset #11 1,51 |
| 18121 | | |
| 18122 | | > close #8 |
| 18123 | | |
| 18124 | | > close #11 |
| 18125 | | |
| 18126 | | > morph #9,10 |
| 18127 | | |
| 18128 | | Computed 51 frame morph #8 |
| 18129 | | |
| 18130 | | > coordset #8 1,51 |
| 18131 | | |
| 18132 | | > show #!7 models |
| 18133 | | |
| 18134 | | > select |
| 18135 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 18136 | | |
| 18137 | | 9756 atoms, 9630 bonds, 252 residues, 5 models selected |
| 18138 | | |
| 18139 | | > hide sel atoms |
| 18140 | | |
| 18141 | | > select clear |
| 18142 | | |
| 18143 | | > show #!6 models |
| 18144 | | |
| 18145 | | > morph #8,6 |
| 18146 | | |
| 18147 | | Traceback (most recent call last): |
| 18148 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 18149 | | packages\chimerax\cmd_line\tool.py", line 319, in execute |
| 18150 | | cmd.run(cmd_text) |
| 18151 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 18152 | | packages\chimerax\core\commands\cli.py", line 2897, in run |
| 18153 | | result = ci.function(session, **kw_args) |
| 18154 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 18155 | | packages\chimerax\morph\morph.py", line 73, in morph |
| 18156 | | traj = compute_morph(structures, session.logger, method=method, rate=rate, |
| 18157 | | frames=frames, |
| 18158 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 18159 | | packages\chimerax\morph\motion.py", line 28, in compute_morph |
| 18160 | | motion.interpolate(res_groups, atom_map, res_interp) |
| 18161 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 18162 | | packages\chimerax\morph\motion.py", line 149, in interpolate |
| 18163 | | coords0[maindices] = matoms.coords |
| 18164 | | IndexError: index 9705 is out of bounds for axis 0 with size 9684 |
| 18165 | | |
| 18166 | | IndexError: index 9705 is out of bounds for axis 0 with size 9684 |
| 18167 | | |
| 18168 | | File "C:\Program Files\ChimeraX\bin\lib\site- |
| 18169 | | packages\chimerax\morph\motion.py", line 149, in interpolate |
| 18170 | | coords0[maindices] = matoms.coords |
| 18171 | | |
| 18172 | | See log for complete Python traceback. |
| 18173 | | |
| 18174 | | |
| 18175 | | > close #8 |
| 18176 | | |
| 18177 | | > morph #9,6 |
| 18178 | | |
| 18179 | | Computed 51 frame morph #8 |
| 18180 | | |
| 18181 | | > coordset #8 1,51 |
| 18182 | | |
| 18183 | | > hide #!7 models |
| 18184 | | |
| 18185 | | > show #!7 models |
| 18186 | | |
| 18187 | | > select #6,7,9,10:189 |
| 18188 | | |
| 18189 | | 264 atoms, 240 bonds, 24 residues, 4 models selected |
| 18190 | | |
| 18191 | | > show sel atoms |
| 18192 | | |
| 18193 | | > select clear |
| 18194 | | |
| 18195 | | > hide #!8 models |
| 18196 | | |
| 18197 | | > show #!8 models |
| 18198 | | |
| 18199 | | > select #6,7,9,10:189,185 |
| 18200 | | |
| 18201 | | 552 atoms, 528 bonds, 48 residues, 4 models selected |
| 18202 | | |
| 18203 | | > show sel atoms |
| 18204 | | |
| 18205 | | > hide #!8 models |
| 18206 | | |
| 18207 | | > show #!8 models |
| 18208 | | |
| 18209 | | > hide #!8 models |
| 18210 | | |
| 18211 | | > show #!9 models |
| 18212 | | |
| 18213 | | > show #!10 models |
| 18214 | | |
| 18215 | | > hide #!9 models |
| 18216 | | |
| 18217 | | > select clear |
| 18218 | | |
| 18219 | | > select |
| 18220 | | |
| 18221 | | 77358 atoms, 78900 bonds, 42 pseudobonds, 7344 residues, 22 models selected |
| 18222 | | |
| 18223 | | > ribbon style thickness 0.6 |
| 18224 | | |
| 18225 | | > select clear |
| 18226 | | |
| 18227 | | > show #!5 models |
| 18228 | | |
| 18229 | | > hide #!5 models |
| 18230 | | |
| 18231 | | > hide #!10 models |
| 18232 | | |
| 18233 | | > show #!9 models |
| 18234 | | |
| 18235 | | > hide #!7 models |
| 18236 | | |
| 18237 | | > show #!4 models |
| 18238 | | |
| 18239 | | > hide #!9 models |
| 18240 | | |
| 18241 | | > hide #!4 models |
| 18242 | | |
| 18243 | | > show #!2 models |
| 18244 | | |
| 18245 | | > hide #!2 models |
| 18246 | | |
| 18247 | | > show #!7 models |
| 18248 | | |
| 18249 | | > sel: 74-110 |
| 18250 | | |
| 18251 | | Unknown command: sel: 74-110 |
| 18252 | | |
| 18253 | | > sel:74-110 |
| 18254 | | |
| 18255 | | Unknown command: sel:74-110 |
| 18256 | | |
| 18257 | | > sel:74-110 |
| 18258 | | |
| 18259 | | Unknown command: sel:74-110 |
| 18260 | | |
| 18261 | | > sel: 74-110 |
| 18262 | | |
| 18263 | | Unknown command: sel: 74-110 |
| 18264 | | |
| 18265 | | > sel: 74-110 |
| 18266 | | |
| 18267 | | Unknown command: sel: 74-110 |
| 18268 | | |
| 18269 | | > select #6,7,9,10: 74-110 |
| 18270 | | |
| 18271 | | 7566 atoms, 7782 bonds, 864 residues, 4 models selected |
| 18272 | | |
| 18273 | | > ui tool show "Selection Inspector" |
| 18274 | | |
| 18275 | | > setattr sel r ss_type 1 |
| 18276 | | |
| 18277 | | Assigning ss_type attribute to 864 items |
| 18278 | | |
| 18279 | | > select clear |
| 18280 | | |
| 18281 | | > close #8 |
| 18282 | | |
| 18283 | | > morph #7,9 |
| 18284 | | |
| 18285 | | Computed 51 frame morph #8 |
| 18286 | | |
| 18287 | | > coordset #8 1,51 |
| 18288 | | |
| 18289 | | > select #6-10 |
| 18290 | | |
| 18291 | | 53034 atoms, 54354 bonds, 30 pseudobonds, 6036 residues, 10 models selected |
| 18292 | | |
| 18293 | | > select #6-10/b,c,e,f |
| 18294 | | |
| 18295 | | 35356 atoms, 36236 bonds, 20 pseudobonds, 4024 residues, 10 models selected |
| 18296 | | |
| 18297 | | > hide sel ribbons |
| 18298 | | |
| 18299 | | > hide sel atoms |
| 18300 | | |
| 18301 | | > select clear |
| 18302 | | |
| 18303 | | > hide #!8 models |
| 18304 | | |
| 18305 | | > show #!9 models |
| 18306 | | |
| 18307 | | > show #!6 models |
| 18308 | | |
| 18309 | | > close #8 |
| 18310 | | |
| 18311 | | > morph #7,9,10,6 |
| 18312 | | |
| 18313 | | Computed 151 frame morph #8 |
| 18314 | | |
| 18315 | | > coordset #8 1,151 |
| 18316 | | |
| 18317 | | > hide #!9 models |
| 18318 | | |
| 18319 | | > show #!6 models |
| 18320 | | |
| 18321 | | > hide #!8 models |
| 18322 | | |
| 18323 | | > hide #!6 models |
| 18324 | | |
| 18325 | | > show #!8 models |
| 18326 | | |
| 18327 | | > morph #9,10 |
| 18328 | | |
| 18329 | | Computed 51 frame morph #11 |
| 18330 | | |
| 18331 | | > coordset #11 1,51 |
| 18332 | | |
| 18333 | | > hide #!8 models |
| 18334 | | |
| 18335 | | > select #6-10 |
| 18336 | | |
| 18337 | | 53010 atoms, 54324 bonds, 30 pseudobonds, 6036 residues, 10 models selected |
| 18338 | | |
| 18339 | | > show sel ribbons |
| 18340 | | |
| 18341 | | > close #11 |
| 18342 | | |
| 18343 | | > show #!9 models |
| 18344 | | |
| 18345 | | > show #!8 models |
| 18346 | | |
| 18347 | | > hide #!9 models |
| 18348 | | |
| 18349 | | > select clear |
| 18350 | | |
| 18351 | | > close #8 |
| 18352 | | |
| 18353 | | > morph #9,10 |
| 18354 | | |
| 18355 | | Computed 51 frame morph #8 |
| 18356 | | |
| 18357 | | > coordset #8 1,51 |
| 18358 | | |
| 18359 | | > morph #10,6 |
| 18360 | | |
| 18361 | | Computed 51 frame morph #11 |
| 18362 | | |
| 18363 | | > coordset #11 1,51 |
| 18364 | | |
| 18365 | | > hide #!8 models |
| 18366 | | |
| 18367 | | > close #8,11 |
| 18368 | | |
| 18369 | | > show #!7 models |
| 18370 | | |
| 18371 | | > morph #7,9,10,6 |
| 18372 | | |
| 18373 | | Computed 151 frame morph #8 |
| 18374 | | |
| 18375 | | > coordset #8 1,151 |
| 18376 | | |
| 18377 | | > select #6-10 |
| 18378 | | |
| 18379 | | 53010 atoms, 54324 bonds, 30 pseudobonds, 6036 residues, 10 models selected |
| 18380 | | |
| 18381 | | > select #6-10:33 |
| 18382 | | |
| 18383 | | 330 atoms, 300 bonds, 30 residues, 5 models selected |
| 18384 | | |
| 18385 | | > hide sel atoms |
| 18386 | | |
| 18387 | | > select clear |
| 18388 | | |
| 18389 | | > hide #!8 models |
| 18390 | | |
| 18391 | | > show #!7 models |
| 18392 | | |
| 18393 | | > select |
| 18394 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 18395 | | |
| 18396 | | 9756 atoms, 9630 bonds, 252 residues, 5 models selected |
| 18397 | | |
| 18398 | | > show sel atoms |
| 18399 | | |
| 18400 | | > select clear |
| 18401 | | |
| 18402 | | > hide #!7 models |
| 18403 | | |
| 18404 | | > show #!9 models |
| 18405 | | |
| 18406 | | > show #!4 models |
| 18407 | | |
| 18408 | | > hide #!4 models |
| 18409 | | |
| 18410 | | > hide #!9 models |
| 18411 | | |
| 18412 | | > show #!8 models |
| 18413 | | |
| 18414 | | > select #8 |
| 18415 | | |
| 18416 | | 9396 atoms, 9672 bonds, 6 pseudobonds, 1158 residues, 2 models selected |
| 18417 | | |
| 18418 | | > show sel atoms |
| 18419 | | |
| 18420 | | > select clear |
| 18421 | | |
| 18422 | | > hide #!8 models |
| 18423 | | |
| 18424 | | > show #!6 models |
| 18425 | | |
| 18426 | | > mlp #!6 |
| 18427 | | |
| 18428 | | Map values for surface "231026_From103_real_space_refined_104.pdb_A SES |
| 18429 | | surface": minimum -27.83, mean 0.02625, maximum 26.49 |
| 18430 | | Map values for surface "231026_From103_real_space_refined_104.pdb_B SES |
| 18431 | | surface": minimum -27.45, mean 0.07152, maximum 26.11 |
| 18432 | | Map values for surface "231026_From103_real_space_refined_104.pdb_C SES |
| 18433 | | surface": minimum -27.25, mean -0.01701, maximum 23.5 |
| 18434 | | Map values for surface "231026_From103_real_space_refined_104.pdb_D SES |
| 18435 | | surface": minimum -27.72, mean 0.03478, maximum 26.1 |
| 18436 | | Map values for surface "231026_From103_real_space_refined_104.pdb_E SES |
| 18437 | | surface": minimum -27.16, mean 7.777e-05, maximum 26.13 |
| 18438 | | Map values for surface "231026_From103_real_space_refined_104.pdb_F SES |
| 18439 | | surface": minimum -28.3, mean -0.06602, maximum 23.46 |
| 18440 | | To also show corresponding color key, enter the above mlp command and add key |
| 18441 | | true |
| 18442 | | |
| 18443 | | > show #!7 models |
| 18444 | | |
| 18445 | | > hide #!6 models |
| 18446 | | |
| 18447 | | > mlp #!7 |
| 18448 | | |
| 18449 | | Map values for surface "231030_N55H_Chol_193_A SES surface": minimum -25.64, |
| 18450 | | mean 0.3385, maximum 25.03 |
| 18451 | | Map values for surface "231030_N55H_Chol_193_B SES surface": minimum -25.22, |
| 18452 | | mean 0.3385, maximum 24.84 |
| 18453 | | Map values for surface "231030_N55H_Chol_193_C SES surface": minimum -25.96, |
| 18454 | | mean 0.2875, maximum 24.31 |
| 18455 | | Map values for surface "231030_N55H_Chol_193_D SES surface": minimum -26.16, |
| 18456 | | mean 0.3782, maximum 24.07 |
| 18457 | | Map values for surface "231030_N55H_Chol_193_E SES surface": minimum -25.6, |
| 18458 | | mean 0.3232, maximum 25.35 |
| 18459 | | Map values for surface "231030_N55H_Chol_193_F SES surface": minimum -25.37, |
| 18460 | | mean 0.3887, maximum 24.67 |
| 18461 | | To also show corresponding color key, enter the above mlp command and add key |
| 18462 | | true |
| 18463 | | |
| 18464 | | > show #!8 models |
| 18465 | | |
| 18466 | | > hide #!7 models |
| 18467 | | |
| 18468 | | > hide #!8 models |
| 18469 | | |
| 18470 | | > show #!9 models |
| 18471 | | |
| 18472 | | > mlp #!9 |
| 18473 | | |
| 18474 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_A SES surface": |
| 18475 | | minimum -29.47, mean -0.08969, maximum 24.45 |
| 18476 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_B SES surface": |
| 18477 | | minimum -29.72, mean -0.01814, maximum 24.81 |
| 18478 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_C SES surface": |
| 18479 | | minimum -29.24, mean -0.03067, maximum 24.43 |
| 18480 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_D SES surface": |
| 18481 | | minimum -29.64, mean -0.07075, maximum 24.46 |
| 18482 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_E SES surface": |
| 18483 | | minimum -28.99, mean -0.05671, maximum 25.01 |
| 18484 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_F SES surface": |
| 18485 | | minimum -28.91, mean -0.05575, maximum 25.01 |
| 18486 | | To also show corresponding color key, enter the above mlp command and add key |
| 18487 | | true |
| 18488 | | |
| 18489 | | > show #!10 models |
| 18490 | | |
| 18491 | | > hide #!9 models |
| 18492 | | |
| 18493 | | > mlp #!10 |
| 18494 | | |
| 18495 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_A SES |
| 18496 | | surface": minimum -25.08, mean 0.5653, maximum 24.82 |
| 18497 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_B SES |
| 18498 | | surface": minimum -25.8, mean 0.4647, maximum 24.1 |
| 18499 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_C SES |
| 18500 | | surface": minimum -25.51, mean 0.4946, maximum 23.66 |
| 18501 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_D SES |
| 18502 | | surface": minimum -25.66, mean 0.537, maximum 24.14 |
| 18503 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_E SES |
| 18504 | | surface": minimum -25.48, mean 0.4144, maximum 23.57 |
| 18505 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_F SES |
| 18506 | | surface": minimum -25.12, mean 0.4616, maximum 24.27 |
| 18507 | | To also show corresponding color key, enter the above mlp command and add key |
| 18508 | | true |
| 18509 | | |
| 18510 | | > hide #!10 models |
| 18511 | | |
| 18512 | | > show #!7 models |
| 18513 | | |
| 18514 | | > show #!9 models |
| 18515 | | |
| 18516 | | > hide #!9 models |
| 18517 | | |
| 18518 | | > show #!9 models |
| 18519 | | |
| 18520 | | > hide #!9 models |
| 18521 | | |
| 18522 | | > show #!9 models |
| 18523 | | |
| 18524 | | > show #!10 models |
| 18525 | | |
| 18526 | | > hide #!10 models |
| 18527 | | |
| 18528 | | > show #!6 models |
| 18529 | | |
| 18530 | | > hide #!6 models |
| 18531 | | |
| 18532 | | > show #!6 models |
| 18533 | | |
| 18534 | | > hide #!7 models |
| 18535 | | |
| 18536 | | > hide #!6 models |
| 18537 | | |
| 18538 | | > show #!6 models |
| 18539 | | |
| 18540 | | > hide #!9 models |
| 18541 | | |
| 18542 | | > show #!9 models |
| 18543 | | |
| 18544 | | > hide #!6 models |
| 18545 | | |
| 18546 | | > show #!6 models |
| 18547 | | |
| 18548 | | > hide #!9 models |
| 18549 | | |
| 18550 | | > show #!7 models |
| 18551 | | |
| 18552 | | > hide #!6 models |
| 18553 | | |
| 18554 | | > show #!6 models |
| 18555 | | |
| 18556 | | > hide #!7 models |
| 18557 | | |
| 18558 | | > show #!7 models |
| 18559 | | |
| 18560 | | > hide #!7 models |
| 18561 | | |
| 18562 | | > show #!7 models |
| 18563 | | |
| 18564 | | > hide #!7 models |
| 18565 | | |
| 18566 | | > hide #!6 models |
| 18567 | | |
| 18568 | | > show #!7 models |
| 18569 | | |
| 18570 | | > show #!6 models |
| 18571 | | |
| 18572 | | > hide #!7 models |
| 18573 | | |
| 18574 | | > hide #!6 surfaces |
| 18575 | | |
| 18576 | | > show #!1 models |
| 18577 | | |
| 18578 | | > volume #1 level 0.1516 |
| 18579 | | |
| 18580 | | > hide #!6 models |
| 18581 | | |
| 18582 | | > show #!5 models |
| 18583 | | |
| 18584 | | > hide #!1 models |
| 18585 | | |
| 18586 | | > hide #!5 models |
| 18587 | | |
| 18588 | | > show #!4 models |
| 18589 | | |
| 18590 | | > show #!9 models |
| 18591 | | |
| 18592 | | > hide #!9 surfaces |
| 18593 | | |
| 18594 | | > show #!7 models |
| 18595 | | |
| 18596 | | > hide #!7 models |
| 18597 | | |
| 18598 | | > show #!7 models |
| 18599 | | |
| 18600 | | > hide #!7,9 surfaces |
| 18601 | | |
| 18602 | | > hide #!9 models |
| 18603 | | |
| 18604 | | > show #!2 models |
| 18605 | | |
| 18606 | | > hide #!4 models |
| 18607 | | |
| 18608 | | > show #!4 models |
| 18609 | | |
| 18610 | | > hide #!2 models |
| 18611 | | |
| 18612 | | > hide #!4 models |
| 18613 | | |
| 18614 | | > show #!9 models |
| 18615 | | |
| 18616 | | > show #!4 models |
| 18617 | | |
| 18618 | | > hide #!4 models |
| 18619 | | |
| 18620 | | > hide #!9 models |
| 18621 | | |
| 18622 | | > hide #!7 models |
| 18623 | | |
| 18624 | | > show #!7 models |
| 18625 | | |
| 18626 | | > select #7/A:189@NH2 |
| 18627 | | |
| 18628 | | 1 atom, 1 residue, 1 model selected |
| 18629 | | |
| 18630 | | > select add #7/B:301@N29 |
| 18631 | | |
| 18632 | | 2 atoms, 2 residues, 2 models selected |
| 18633 | | |
| 18634 | | > ui tool show Distances |
| 18635 | | |
| 18636 | | > distance #7/A:189@NH2 #7/B:301@N29 |
| 18637 | | |
| 18638 | | Distance between 231030_N55H_Chol_193 #7/A ARG 189 NH2 and /B 6OU 301 N29: |
| 18639 | | 3.9Å |
| 18640 | | |
| 18641 | | > select clear |
| 18642 | | |
| 18643 | | > show #!5 models |
| 18644 | | |
| 18645 | | > hide #!7 models |
| 18646 | | |
| 18647 | | > show #!10 models |
| 18648 | | |
| 18649 | | > hide #!10 surfaces |
| 18650 | | |
| 18651 | | > view orient |
| 18652 | | |
| 18653 | | > turn x 90 |
| 18654 | | |
| 18655 | | [Repeated 2 time(s)] |
| 18656 | | |
| 18657 | | > clip front 0 |
| 18658 | | |
| 18659 | | > ui tool show "Map Coordinates" |
| 18660 | | |
| 18661 | | > ui tool show "Volume Viewer" |
| 18662 | | |
| 18663 | | > volume #5 level 0.0662 |
| 18664 | | |
| 18665 | | > show #!8 models |
| 18666 | | |
| 18667 | | > hide #!8 models |
| 18668 | | |
| 18669 | | > show #!2 models |
| 18670 | | |
| 18671 | | > hide #!2 models |
| 18672 | | |
| 18673 | | > select #10 |
| 18674 | | |
| 18675 | | 9840 atoms, 10116 bonds, 6 pseudobonds, 1194 residues, 2 models selected |
| 18676 | | |
| 18677 | | > show sel atoms |
| 18678 | | |
| 18679 | | > select clear |
| 18680 | | |
| 18681 | | > hide #!10 models |
| 18682 | | |
| 18683 | | > hide #!5 models |
| 18684 | | |
| 18685 | | > show #!2 models |
| 18686 | | |
| 18687 | | > show #!8 models |
| 18688 | | |
| 18689 | | > volume #2 level 0.1497 |
| 18690 | | |
| 18691 | | > show #!1 models |
| 18692 | | |
| 18693 | | > hide #!2 models |
| 18694 | | |
| 18695 | | > hide #!1 models |
| 18696 | | |
| 18697 | | > show #!2 models |
| 18698 | | |
| 18699 | | > volume #2 level 0.1028 |
| 18700 | | |
| 18701 | | > volume #2 level 0.0871 |
| 18702 | | |
| 18703 | | > volume #2 level 0.1247 |
| 18704 | | |
| 18705 | | > ~clip |
| 18706 | | |
| 18707 | | > volume #2 level 0.1028 |
| 18708 | | |
| 18709 | | > view orient |
| 18710 | | |
| 18711 | | > view 1 |
| 18712 | | |
| 18713 | | > clip front 0 |
| 18714 | | |
| 18715 | | > volume #2 level 0.08084 |
| 18716 | | |
| 18717 | | > select |
| 18718 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 18719 | | |
| 18720 | | 9756 atoms, 9630 bonds, 252 residues, 5 models selected |
| 18721 | | |
| 18722 | | > show sel atoms |
| 18723 | | |
| 18724 | | > select clear |
| 18725 | | |
| 18726 | | > hide #!8 models |
| 18727 | | |
| 18728 | | > show #!7 models |
| 18729 | | |
| 18730 | | > volume #2 level 0.09649 |
| 18731 | | |
| 18732 | | > show #!6 models |
| 18733 | | |
| 18734 | | > hide #!7 models |
| 18735 | | |
| 18736 | | > hide #!6 models |
| 18737 | | |
| 18738 | | > show #!6 models |
| 18739 | | |
| 18740 | | > show #!1 models |
| 18741 | | |
| 18742 | | > hide #!2 models |
| 18743 | | |
| 18744 | | > hide #!1 models |
| 18745 | | |
| 18746 | | > show #!2 models |
| 18747 | | |
| 18748 | | > hide #!2 models |
| 18749 | | |
| 18750 | | > show #!4 models |
| 18751 | | |
| 18752 | | > hide #!6 models |
| 18753 | | |
| 18754 | | > show #!10 models |
| 18755 | | |
| 18756 | | > close #11 |
| 18757 | | |
| 18758 | | > hide #!10 models |
| 18759 | | |
| 18760 | | > show #!9 models |
| 18761 | | |
| 18762 | | > hide #!4 models |
| 18763 | | |
| 18764 | | > ~clip |
| 18765 | | |
| 18766 | | > show #!6 models |
| 18767 | | |
| 18768 | | > hide #!9 models |
| 18769 | | |
| 18770 | | > show #!9 models |
| 18771 | | |
| 18772 | | > hide #!9 models |
| 18773 | | |
| 18774 | | > mlp #!6 |
| 18775 | | |
| 18776 | | Map values for surface "231026_From103_real_space_refined_104.pdb_A SES |
| 18777 | | surface": minimum -27.83, mean 0.02625, maximum 26.49 |
| 18778 | | Map values for surface "231026_From103_real_space_refined_104.pdb_B SES |
| 18779 | | surface": minimum -27.45, mean 0.07152, maximum 26.11 |
| 18780 | | Map values for surface "231026_From103_real_space_refined_104.pdb_C SES |
| 18781 | | surface": minimum -27.25, mean -0.01701, maximum 23.5 |
| 18782 | | Map values for surface "231026_From103_real_space_refined_104.pdb_D SES |
| 18783 | | surface": minimum -27.72, mean 0.03478, maximum 26.1 |
| 18784 | | Map values for surface "231026_From103_real_space_refined_104.pdb_E SES |
| 18785 | | surface": minimum -27.16, mean 7.777e-05, maximum 26.13 |
| 18786 | | Map values for surface "231026_From103_real_space_refined_104.pdb_F SES |
| 18787 | | surface": minimum -28.3, mean -0.06602, maximum 23.46 |
| 18788 | | To also show corresponding color key, enter the above mlp command and add key |
| 18789 | | true |
| 18790 | | |
| 18791 | | > select #6:57,54,194,197 |
| 18792 | | |
| 18793 | | 198 atoms, 180 bonds, 24 residues, 1 model selected |
| 18794 | | |
| 18795 | | > color sel magenta |
| 18796 | | |
| 18797 | | > select clear |
| 18798 | | |
| 18799 | | > hide #!6 models |
| 18800 | | |
| 18801 | | > show #!7 models |
| 18802 | | |
| 18803 | | > mlp #!7 |
| 18804 | | |
| 18805 | | Map values for surface "231030_N55H_Chol_193_A SES surface": minimum -25.39, |
| 18806 | | mean 0.3403, maximum 25.18 |
| 18807 | | Map values for surface "231030_N55H_Chol_193_B SES surface": minimum -25.2, |
| 18808 | | mean 0.3412, maximum 24.75 |
| 18809 | | Map values for surface "231030_N55H_Chol_193_C SES surface": minimum -26.3, |
| 18810 | | mean 0.2841, maximum 24.44 |
| 18811 | | Map values for surface "231030_N55H_Chol_193_D SES surface": minimum -25.84, |
| 18812 | | mean 0.3776, maximum 24 |
| 18813 | | Map values for surface "231030_N55H_Chol_193_E SES surface": minimum -25.77, |
| 18814 | | mean 0.3259, maximum 24.92 |
| 18815 | | Map values for surface "231030_N55H_Chol_193_F SES surface": minimum -25.96, |
| 18816 | | mean 0.385, maximum 24.78 |
| 18817 | | To also show corresponding color key, enter the above mlp command and add key |
| 18818 | | true |
| 18819 | | |
| 18820 | | > select #6,7,9,10:57,54,194,197 |
| 18821 | | |
| 18822 | | 792 atoms, 720 bonds, 96 residues, 4 models selected |
| 18823 | | |
| 18824 | | > color sel magenta |
| 18825 | | |
| 18826 | | > save "C:/Users/OJS/OneDrive - |
| 18827 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 18828 | | |
| 18829 | | > select clear |
| 18830 | | |
| 18831 | | > show #!6 models |
| 18832 | | |
| 18833 | | > hide #!6 models |
| 18834 | | |
| 18835 | | > show #!6 models |
| 18836 | | |
| 18837 | | > hide #!6 models |
| 18838 | | |
| 18839 | | > show #!6 models |
| 18840 | | |
| 18841 | | > hide #!7 models |
| 18842 | | |
| 18843 | | > show #!7 models |
| 18844 | | |
| 18845 | | > hide #!6 models |
| 18846 | | |
| 18847 | | > show #!6 models |
| 18848 | | |
| 18849 | | > hide #!7 models |
| 18850 | | |
| 18851 | | > show #!7 models |
| 18852 | | |
| 18853 | | > hide #!7 models |
| 18854 | | |
| 18855 | | > show #!7 models |
| 18856 | | |
| 18857 | | > hide #!7 models |
| 18858 | | |
| 18859 | | > morph #6,7 |
| 18860 | | |
| 18861 | | Computed 51 frame morph #11 |
| 18862 | | |
| 18863 | | > coordset #11 1,51 |
| 18864 | | |
| 18865 | | > close #8 |
| 18866 | | |
| 18867 | | > close #11 |
| 18868 | | |
| 18869 | | > show #!6 models |
| 18870 | | |
| 18871 | | > show #!7 models |
| 18872 | | |
| 18873 | | > hide #!6-7 surfaces |
| 18874 | | |
| 18875 | | > show #!9 models |
| 18876 | | |
| 18877 | | > hide #!9 models |
| 18878 | | |
| 18879 | | > show #!1 models |
| 18880 | | |
| 18881 | | > hide #!1 models |
| 18882 | | |
| 18883 | | > hide #!6 models |
| 18884 | | |
| 18885 | | > show #!6 models |
| 18886 | | |
| 18887 | | > select add #6 |
| 18888 | | |
| 18889 | | 11616 atoms, 11814 bonds, 6 pseudobonds, 1266 residues, 2 models selected |
| 18890 | | |
| 18891 | | > view matrix models |
| 18892 | | > #6,0.24309,0.9047,0.34989,-119.3,0.93237,-0.31743,0.17299,1.5526,0.26757,0.28417,-0.92068,207.33 |
| 18893 | | |
| 18894 | | > view matrix models |
| 18895 | | > #6,0.43732,0.89814,0.045849,-98.713,0.88271,-0.43844,0.16908,31.173,0.17196,-0.03347,-0.98454,288.43 |
| 18896 | | |
| 18897 | | > view matrix models |
| 18898 | | > #6,0.45659,0.88856,0.044585,-100.14,0.88893,-0.45769,0.018212,59.391,0.036589,0.031317,-0.99884,302.86 |
| 18899 | | |
| 18900 | | > ui tool show "Fit in Map" |
| 18901 | | |
| 18902 | | > fitmap #6 inMap #1 |
| 18903 | | |
| 18904 | | Fit molecule 231026_From103_real_space_refined_104.pdb (#6) to map |
| 18905 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11616 atoms |
| 18906 | | average map value = 0.3596, steps = 68 |
| 18907 | | shifted from previous position = 0.128 |
| 18908 | | rotated from previous position = 4.08 degrees |
| 18909 | | atoms outside contour = 1850, contour level = 0.15164 |
| 18910 | | |
| 18911 | | Position of 231026_From103_real_space_refined_104.pdb (#6) relative to |
| 18912 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 18913 | | Matrix rotation and translation |
| 18914 | | -0.49985016 -0.86611183 -0.00033606 401.31679808 |
| 18915 | | 0.86611186 -0.49985021 0.00008093 107.46889385 |
| 18916 | | -0.00023807 -0.00025061 0.99999994 0.08322749 |
| 18917 | | Axis -0.00019140 -0.00005657 0.99999998 |
| 18918 | | Axis point 169.62861309 169.60776938 0.00000000 |
| 18919 | | Rotation angle (degrees) 119.99009069 |
| 18920 | | Shift along axis 0.00033738 |
| 18921 | | |
| 18922 | | |
| 18923 | | > select clear |
| 18924 | | |
| 18925 | | > morph #6,7 |
| 18926 | | |
| 18927 | | Computed 51 frame morph #8 |
| 18928 | | |
| 18929 | | > coordset #8 1,51 |
| 18930 | | |
| 18931 | | > mlp #!8 |
| 18932 | | |
| 18933 | | Map values for surface "Morph - 231026_From103_real_space_refined_104.pdb_A |
| 18934 | | SES surface": minimum -25.8, mean 0.3751, maximum 24.61 |
| 18935 | | Map values for surface "Morph - 231026_From103_real_space_refined_104.pdb_B |
| 18936 | | SES surface": minimum -25.56, mean 0.2898, maximum 24.95 |
| 18937 | | Map values for surface "Morph - 231026_From103_real_space_refined_104.pdb_C |
| 18938 | | SES surface": minimum -26.27, mean 0.2309, maximum 24.64 |
| 18939 | | Map values for surface "Morph - 231026_From103_real_space_refined_104.pdb_D |
| 18940 | | SES surface": minimum -26.69, mean 0.3794, maximum 24.33 |
| 18941 | | Map values for surface "Morph - 231026_From103_real_space_refined_104.pdb_E |
| 18942 | | SES surface": minimum -25.38, mean 0.239, maximum 25.27 |
| 18943 | | Map values for surface "Morph - 231026_From103_real_space_refined_104.pdb_F |
| 18944 | | SES surface": minimum -27.35, mean 0.2739, maximum 24.85 |
| 18945 | | To also show corresponding color key, enter the above mlp command and add key |
| 18946 | | true |
| 18947 | | |
| 18948 | | > select #8/b,c,e,f |
| 18949 | | |
| 18950 | | 6264 atoms, 6448 bonds, 4 pseudobonds, 772 residues, 2 models selected |
| 18951 | | |
| 18952 | | > hide sel atoms |
| 18953 | | |
| 18954 | | > hide sel ribbons |
| 18955 | | |
| 18956 | | > hide sel surfaces |
| 18957 | | |
| 18958 | | > close #8 |
| 18959 | | |
| 18960 | | > show #!6 models |
| 18961 | | |
| 18962 | | > mlp #!6 |
| 18963 | | |
| 18964 | | Map values for surface "231026_From103_real_space_refined_104.pdb_A SES |
| 18965 | | surface": minimum -27.53, mean 0.03269, maximum 26.46 |
| 18966 | | Map values for surface "231026_From103_real_space_refined_104.pdb_B SES |
| 18967 | | surface": minimum -27.21, mean 0.06696, maximum 26.08 |
| 18968 | | Map values for surface "231026_From103_real_space_refined_104.pdb_C SES |
| 18969 | | surface": minimum -27.6, mean -0.01504, maximum 23.57 |
| 18970 | | Map values for surface "231026_From103_real_space_refined_104.pdb_D SES |
| 18971 | | surface": minimum -27.49, mean 0.03672, maximum 26.33 |
| 18972 | | Map values for surface "231026_From103_real_space_refined_104.pdb_E SES |
| 18973 | | surface": minimum -27.25, mean -0.005369, maximum 26.02 |
| 18974 | | Map values for surface "231026_From103_real_space_refined_104.pdb_F SES |
| 18975 | | surface": minimum -28.6, mean -0.0675, maximum 23.74 |
| 18976 | | To also show corresponding color key, enter the above mlp command and add key |
| 18977 | | true |
| 18978 | | |
| 18979 | | > show #!7 models |
| 18980 | | |
| 18981 | | > hide #!6 models |
| 18982 | | |
| 18983 | | > mlp #!7 |
| 18984 | | |
| 18985 | | Map values for surface "231030_N55H_Chol_193_A SES surface": minimum -25.39, |
| 18986 | | mean 0.3403, maximum 25.18 |
| 18987 | | Map values for surface "231030_N55H_Chol_193_B SES surface": minimum -25.2, |
| 18988 | | mean 0.3412, maximum 24.75 |
| 18989 | | Map values for surface "231030_N55H_Chol_193_C SES surface": minimum -26.3, |
| 18990 | | mean 0.2841, maximum 24.44 |
| 18991 | | Map values for surface "231030_N55H_Chol_193_D SES surface": minimum -25.84, |
| 18992 | | mean 0.3776, maximum 24 |
| 18993 | | Map values for surface "231030_N55H_Chol_193_E SES surface": minimum -25.77, |
| 18994 | | mean 0.3259, maximum 24.92 |
| 18995 | | Map values for surface "231030_N55H_Chol_193_F SES surface": minimum -25.96, |
| 18996 | | mean 0.385, maximum 24.78 |
| 18997 | | To also show corresponding color key, enter the above mlp command and add key |
| 18998 | | true |
| 18999 | | |
| 19000 | | > show #!6 models |
| 19001 | | |
| 19002 | | > hide #!7 models |
| 19003 | | |
| 19004 | | > show #!27 models |
| 19005 | | |
| 19006 | | > hide #!27 models |
| 19007 | | |
| 19008 | | > show #!7 models |
| 19009 | | |
| 19010 | | > hide #!6 models |
| 19011 | | |
| 19012 | | > hide #!7 models |
| 19013 | | |
| 19014 | | > show #!6 models |
| 19015 | | |
| 19016 | | > show #!7 models |
| 19017 | | |
| 19018 | | > hide #!6 models |
| 19019 | | |
| 19020 | | > show #!6 models |
| 19021 | | |
| 19022 | | > hide #!7 models |
| 19023 | | |
| 19024 | | > show #!7 models |
| 19025 | | |
| 19026 | | > hide #!6 models |
| 19027 | | |
| 19028 | | > show #!6 models |
| 19029 | | |
| 19030 | | > hide #!7 models |
| 19031 | | |
| 19032 | | > show #!7 models |
| 19033 | | |
| 19034 | | > hide #!6 models |
| 19035 | | |
| 19036 | | > show #!6 models |
| 19037 | | |
| 19038 | | > hide #!7 models |
| 19039 | | |
| 19040 | | > hide #!6 models |
| 19041 | | |
| 19042 | | > show #!9 models |
| 19043 | | |
| 19044 | | > mlp #!9 |
| 19045 | | |
| 19046 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_A SES surface": |
| 19047 | | minimum -29.57, mean -0.08785, maximum 24.29 |
| 19048 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_B SES surface": |
| 19049 | | minimum -29.15, mean -0.01704, maximum 25.25 |
| 19050 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_C SES surface": |
| 19051 | | minimum -29.79, mean -0.03799, maximum 24.31 |
| 19052 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_D SES surface": |
| 19053 | | minimum -29.73, mean -0.06976, maximum 24.07 |
| 19054 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_E SES surface": |
| 19055 | | minimum -28.45, mean -0.05459, maximum 25.28 |
| 19056 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_F SES surface": |
| 19057 | | minimum -29.45, mean -0.06095, maximum 24.67 |
| 19058 | | To also show corresponding color key, enter the above mlp command and add key |
| 19059 | | true |
| 19060 | | |
| 19061 | | > show #!6 models |
| 19062 | | |
| 19063 | | > hide #!9 models |
| 19064 | | |
| 19065 | | > show #!9 models |
| 19066 | | |
| 19067 | | > hide #!6 models |
| 19068 | | |
| 19069 | | > show #!6 models |
| 19070 | | |
| 19071 | | > hide #!6 models |
| 19072 | | |
| 19073 | | > hide #!9 models |
| 19074 | | |
| 19075 | | > show #!10 models |
| 19076 | | |
| 19077 | | > mlp #!10 |
| 19078 | | |
| 19079 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_A SES |
| 19080 | | surface": minimum -25.08, mean 0.5653, maximum 24.82 |
| 19081 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_B SES |
| 19082 | | surface": minimum -25.8, mean 0.4647, maximum 24.1 |
| 19083 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_C SES |
| 19084 | | surface": minimum -25.51, mean 0.4946, maximum 23.66 |
| 19085 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_D SES |
| 19086 | | surface": minimum -25.66, mean 0.537, maximum 24.14 |
| 19087 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_E SES |
| 19088 | | surface": minimum -25.48, mean 0.4144, maximum 23.57 |
| 19089 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_F SES |
| 19090 | | surface": minimum -25.12, mean 0.4616, maximum 24.27 |
| 19091 | | To also show corresponding color key, enter the above mlp command and add key |
| 19092 | | true |
| 19093 | | |
| 19094 | | > show #!6 models |
| 19095 | | |
| 19096 | | > hide #!10 models |
| 19097 | | |
| 19098 | | > transparency 30 |
| 19099 | | |
| 19100 | | > select clear |
| 19101 | | |
| 19102 | | > show #!7 models |
| 19103 | | |
| 19104 | | > hide #!6 models |
| 19105 | | |
| 19106 | | > show #!6 models |
| 19107 | | |
| 19108 | | > hide #!7 models |
| 19109 | | |
| 19110 | | > transparency 10 |
| 19111 | | |
| 19112 | | > show #!7 models |
| 19113 | | |
| 19114 | | > hide #!7 models |
| 19115 | | |
| 19116 | | > show #!7 models |
| 19117 | | |
| 19118 | | > hide #!6 models |
| 19119 | | |
| 19120 | | > show #!6 models |
| 19121 | | |
| 19122 | | > hide #!7 models |
| 19123 | | |
| 19124 | | > show #!7 models |
| 19125 | | |
| 19126 | | > hide #!6 models |
| 19127 | | |
| 19128 | | > show #!9 models |
| 19129 | | |
| 19130 | | > hide #!7 models |
| 19131 | | |
| 19132 | | > hide #!9 models |
| 19133 | | |
| 19134 | | > show #!7 models |
| 19135 | | |
| 19136 | | > show #!9 models |
| 19137 | | |
| 19138 | | > hide #!9 models |
| 19139 | | |
| 19140 | | > show #!9 models |
| 19141 | | |
| 19142 | | > show #!10 models |
| 19143 | | |
| 19144 | | > hide #!7 models |
| 19145 | | |
| 19146 | | > hide #!9 models |
| 19147 | | |
| 19148 | | > show #!2 models |
| 19149 | | |
| 19150 | | > hide #!2 models |
| 19151 | | |
| 19152 | | > show #!6 models |
| 19153 | | |
| 19154 | | > hide #!10 models |
| 19155 | | |
| 19156 | | > hide #!6 models |
| 19157 | | |
| 19158 | | > show #!7 models |
| 19159 | | |
| 19160 | | > hide #!7 models |
| 19161 | | |
| 19162 | | > show #!10 models |
| 19163 | | |
| 19164 | | > show #!5 models |
| 19165 | | |
| 19166 | | > select add #10 |
| 19167 | | |
| 19168 | | 9840 atoms, 10116 bonds, 6 pseudobonds, 1194 residues, 2 models selected |
| 19169 | | |
| 19170 | | > hide sel surfaces |
| 19171 | | |
| 19172 | | > select clear |
| 19173 | | |
| 19174 | | > clip front 0 |
| 19175 | | |
| 19176 | | > volume #5 level 0.04884 |
| 19177 | | |
| 19178 | | > transparency 50 |
| 19179 | | |
| 19180 | | > hide #!5 models |
| 19181 | | |
| 19182 | | > show #!2 models |
| 19183 | | |
| 19184 | | > hide #!10 models |
| 19185 | | |
| 19186 | | > show #!7 models |
| 19187 | | |
| 19188 | | > volume #2 level 0.08321 |
| 19189 | | |
| 19190 | | > select add #7 |
| 19191 | | |
| 19192 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 4 models selected |
| 19193 | | |
| 19194 | | > hide sel surfaces |
| 19195 | | |
| 19196 | | > volume #2 level 0.09384 |
| 19197 | | |
| 19198 | | > hide #!2 models |
| 19199 | | |
| 19200 | | > ~clip |
| 19201 | | |
| 19202 | | > select clear |
| 19203 | | |
| 19204 | | > morph #7,9 |
| 19205 | | |
| 19206 | | Computed 51 frame morph #8 |
| 19207 | | |
| 19208 | | > coordset #8 1,51 |
| 19209 | | |
| 19210 | | > morph #9,10 |
| 19211 | | |
| 19212 | | Computed 51 frame morph #11 |
| 19213 | | |
| 19214 | | > coordset #11 1,51 |
| 19215 | | |
| 19216 | | > moreph #10,6 |
| 19217 | | |
| 19218 | | Unknown command: moreph #10,6 |
| 19219 | | |
| 19220 | | > hide #!11 models |
| 19221 | | |
| 19222 | | > select #8 |
| 19223 | | |
| 19224 | | 9420 atoms, 9702 bonds, 6 pseudobonds, 1158 residues, 2 models selected |
| 19225 | | |
| 19226 | | > show sel atoms |
| 19227 | | |
| 19228 | | > select clear |
| 19229 | | |
| 19230 | | > select #8/b,c,e,f |
| 19231 | | |
| 19232 | | 6280 atoms, 6468 bonds, 4 pseudobonds, 772 residues, 2 models selected |
| 19233 | | |
| 19234 | | > hide sel atoms |
| 19235 | | |
| 19236 | | > hide sel ribobn |
| 19237 | | |
| 19238 | | Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', |
| 19239 | | 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword |
| 19240 | | |
| 19241 | | > select #8/b,c,e,f |
| 19242 | | |
| 19243 | | 6280 atoms, 6468 bonds, 4 pseudobonds, 772 residues, 2 models selected |
| 19244 | | |
| 19245 | | > hide sel ribbons |
| 19246 | | |
| 19247 | | > close #8 |
| 19248 | | |
| 19249 | | > close #11 |
| 19250 | | |
| 19251 | | > show #!2 models |
| 19252 | | |
| 19253 | | > hide #!2 models |
| 19254 | | |
| 19255 | | > show #!7 models |
| 19256 | | |
| 19257 | | > show #!9 models |
| 19258 | | |
| 19259 | | > hide #!7 models |
| 19260 | | |
| 19261 | | > hide #!9 models |
| 19262 | | |
| 19263 | | > show #!10 models |
| 19264 | | |
| 19265 | | > show #!9 models |
| 19266 | | |
| 19267 | | > select |
| 19268 | | |
| 19269 | | 67752 atoms, 69024 bonds, 30 pseudobonds, 6162 residues, 20 models selected |
| 19270 | | |
| 19271 | | > hide sel atoms |
| 19272 | | |
| 19273 | | > select clear |
| 19274 | | |
| 19275 | | > hide #!9-10 surfaces |
| 19276 | | |
| 19277 | | > ui mousemode right "rotate selected models" |
| 19278 | | |
| 19279 | | > hide #!10 models |
| 19280 | | |
| 19281 | | > show #!10 models |
| 19282 | | |
| 19283 | | > select add #10 |
| 19284 | | |
| 19285 | | 9840 atoms, 10116 bonds, 6 pseudobonds, 1194 residues, 2 models selected |
| 19286 | | |
| 19287 | | > view matrix models |
| 19288 | | > #10,0.94001,-0.24775,0.23453,-22.755,0.30572,0.91682,-0.25686,-26.761,-0.15139,0.31315,0.93756,-49.266 |
| 19289 | | |
| 19290 | | > view matrix models |
| 19291 | | > #10,0.99817,-0.039611,0.045649,-34.914,0.039046,0.99915,0.013185,-42.656,-0.046132,-0.011378,0.99887,-22.809 |
| 19292 | | |
| 19293 | | > view matrix models |
| 19294 | | > #10,0.97412,0.17235,0.14623,-84.352,-0.15872,0.98221,-0.10035,13.617,-0.16092,0.074548,0.98415,-15.327 |
| 19295 | | |
| 19296 | | > view matrix models |
| 19297 | | > #10,0.97478,0.15251,0.1629,-84.012,-0.13308,0.98329,-0.12426,13.26,-0.17912,0.099445,0.97879,-15.524 |
| 19298 | | |
| 19299 | | > view matrix models |
| 19300 | | > #10,0.99153,0.080099,0.10225,-63.977,-0.070066,0.9927,-0.09821,-3.5797,-0.10937,0.090213,0.9899,-27.737 |
| 19301 | | |
| 19302 | | > fitmap #10 inMap #5 |
| 19303 | | |
| 19304 | | Fit molecule 231031_From42_100_real_space_refined_043.pdb (#10) to map |
| 19305 | | cryosparc_P76_J149_007_volume_map_sharp.mrc (#5) using 9840 atoms |
| 19306 | | average map value = 0.1163, steps = 128 |
| 19307 | | shifted from previous position = 0.237 |
| 19308 | | rotated from previous position = 14.2 degrees |
| 19309 | | atoms outside contour = 721, contour level = 0.048837 |
| 19310 | | |
| 19311 | | Position of 231031_From42_100_real_space_refined_043.pdb (#10) relative to |
| 19312 | | cryosparc_P76_J149_007_volume_map_sharp.mrc (#5) coordinates: |
| 19313 | | Matrix rotation and translation |
| 19314 | | 0.49968009 0.86621003 0.00002669 -62.08172788 |
| 19315 | | -0.86620967 0.49967991 -0.00089492 231.96297696 |
| 19316 | | -0.00078853 0.00042405 0.99999960 0.02925669 |
| 19317 | | Axis 0.00076135 0.00047057 -0.99999960 |
| 19318 | | Axis point 169.75931584 169.72294757 0.00000000 |
| 19319 | | Rotation angle (degrees) 60.02118225 |
| 19320 | | Shift along axis 0.03263136 |
| 19321 | | |
| 19322 | | |
| 19323 | | > fitmap #10 inMap #5 |
| 19324 | | |
| 19325 | | Fit molecule 231031_From42_100_real_space_refined_043.pdb (#10) to map |
| 19326 | | cryosparc_P76_J149_007_volume_map_sharp.mrc (#5) using 9840 atoms |
| 19327 | | average map value = 0.1163, steps = 40 |
| 19328 | | shifted from previous position = 0.0123 |
| 19329 | | rotated from previous position = 0.00102 degrees |
| 19330 | | atoms outside contour = 722, contour level = 0.048837 |
| 19331 | | |
| 19332 | | Position of 231031_From42_100_real_space_refined_043.pdb (#10) relative to |
| 19333 | | cryosparc_P76_J149_007_volume_map_sharp.mrc (#5) coordinates: |
| 19334 | | Matrix rotation and translation |
| 19335 | | 0.49968790 0.86620552 0.00002068 -62.07361016 |
| 19336 | | -0.86620517 0.49968772 -0.00088082 231.96257952 |
| 19337 | | -0.00077331 0.00042222 0.99999961 0.01823033 |
| 19338 | | Axis 0.00075216 0.00045831 -0.99999961 |
| 19339 | | Axis point 169.76511387 169.71628389 0.00000000 |
| 19340 | | Rotation angle (degrees) 60.02066491 |
| 19341 | | Shift along axis 0.04139216 |
| 19342 | | |
| 19343 | | |
| 19344 | | > select clear |
| 19345 | | |
| 19346 | | > morph #9,10 |
| 19347 | | |
| 19348 | | Computed 51 frame morph #8 |
| 19349 | | |
| 19350 | | > coordset #8 1,51 |
| 19351 | | |
| 19352 | | > morph #9,10,6 |
| 19353 | | |
| 19354 | | Computed 101 frame morph #11 |
| 19355 | | |
| 19356 | | > coordset #11 1,101 |
| 19357 | | |
| 19358 | | > hide #!8 models |
| 19359 | | |
| 19360 | | > morph #9,6 |
| 19361 | | |
| 19362 | | Computed 51 frame morph #12 |
| 19363 | | |
| 19364 | | > coordset #12 1,51 |
| 19365 | | |
| 19366 | | > hide #!11 models |
| 19367 | | |
| 19368 | | > hide #!12 models |
| 19369 | | |
| 19370 | | > show #!10 models |
| 19371 | | |
| 19372 | | > ui mousemode right rotate |
| 19373 | | |
| 19374 | | > mlp #!10 |
| 19375 | | |
| 19376 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_A SES |
| 19377 | | surface": minimum -24.91, mean 0.5673, maximum 24.64 |
| 19378 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_B SES |
| 19379 | | surface": minimum -25.68, mean 0.4686, maximum 24.05 |
| 19380 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_C SES |
| 19381 | | surface": minimum -26.02, mean 0.493, maximum 23.61 |
| 19382 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_D SES |
| 19383 | | surface": minimum -25.49, mean 0.5434, maximum 24.11 |
| 19384 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_E SES |
| 19385 | | surface": minimum -25.57, mean 0.4128, maximum 23.69 |
| 19386 | | Map values for surface "231031_From42_100_real_space_refined_043.pdb_F SES |
| 19387 | | surface": minimum -24.9, mean 0.4645, maximum 24 |
| 19388 | | To also show corresponding color key, enter the above mlp command and add key |
| 19389 | | true |
| 19390 | | |
| 19391 | | > hide #!10 models |
| 19392 | | |
| 19393 | | > show #!6 models |
| 19394 | | |
| 19395 | | > transparency 0 |
| 19396 | | |
| 19397 | | > select clear |
| 19398 | | |
| 19399 | | > show #!7 models |
| 19400 | | |
| 19401 | | > hide #!6 models |
| 19402 | | |
| 19403 | | > mlp #!7 |
| 19404 | | |
| 19405 | | Map values for surface "231030_N55H_Chol_193_A SES surface": minimum -25.39, |
| 19406 | | mean 0.3403, maximum 25.18 |
| 19407 | | Map values for surface "231030_N55H_Chol_193_B SES surface": minimum -25.2, |
| 19408 | | mean 0.3412, maximum 24.75 |
| 19409 | | Map values for surface "231030_N55H_Chol_193_C SES surface": minimum -26.3, |
| 19410 | | mean 0.2841, maximum 24.44 |
| 19411 | | Map values for surface "231030_N55H_Chol_193_D SES surface": minimum -25.84, |
| 19412 | | mean 0.3776, maximum 24 |
| 19413 | | Map values for surface "231030_N55H_Chol_193_E SES surface": minimum -25.77, |
| 19414 | | mean 0.3259, maximum 24.92 |
| 19415 | | Map values for surface "231030_N55H_Chol_193_F SES surface": minimum -25.96, |
| 19416 | | mean 0.385, maximum 24.78 |
| 19417 | | To also show corresponding color key, enter the above mlp command and add key |
| 19418 | | true |
| 19419 | | |
| 19420 | | > show #!6 models |
| 19421 | | |
| 19422 | | > hide #!6 models |
| 19423 | | |
| 19424 | | > show #!6 models |
| 19425 | | |
| 19426 | | > hide #!7 models |
| 19427 | | |
| 19428 | | > hide #!6 models |
| 19429 | | |
| 19430 | | > show #!7 models |
| 19431 | | |
| 19432 | | > show #!6 models |
| 19433 | | |
| 19434 | | > hide #!7 models |
| 19435 | | |
| 19436 | | > show #!7 models |
| 19437 | | |
| 19438 | | > hide #!6 models |
| 19439 | | |
| 19440 | | > show #!10 models |
| 19441 | | |
| 19442 | | > hide #!7 models |
| 19443 | | |
| 19444 | | > hide #!10 surfaces |
| 19445 | | |
| 19446 | | > show #!5 models |
| 19447 | | |
| 19448 | | > transparency 50 |
| 19449 | | |
| 19450 | | > volume #5 level 0.1053 |
| 19451 | | |
| 19452 | | > volume #5 level 0.09421 |
| 19453 | | |
| 19454 | | > volume #5 level 0.08379 |
| 19455 | | |
| 19456 | | > show #!11 models |
| 19457 | | |
| 19458 | | > hide #!11 models |
| 19459 | | |
| 19460 | | > hide #!10 models |
| 19461 | | |
| 19462 | | > show #!9 models |
| 19463 | | |
| 19464 | | > show #!10 models |
| 19465 | | |
| 19466 | | > hide #!5 models |
| 19467 | | |
| 19468 | | > close #12 |
| 19469 | | |
| 19470 | | > close #11 |
| 19471 | | |
| 19472 | | > morph #9,10 |
| 19473 | | |
| 19474 | | Computed 51 frame morph #11 |
| 19475 | | |
| 19476 | | > coordset #11 1,51 |
| 19477 | | |
| 19478 | | > view orient |
| 19479 | | |
| 19480 | | > turn x 90 |
| 19481 | | |
| 19482 | | > select #11/b,c,e,f |
| 19483 | | |
| 19484 | | 6456 atoms, 6644 bonds, 4 pseudobonds, 792 residues, 2 models selected |
| 19485 | | |
| 19486 | | > hide sel ribbons |
| 19487 | | |
| 19488 | | > select #11/b |
| 19489 | | |
| 19490 | | 1614 atoms, 1661 bonds, 1 pseudobond, 198 residues, 2 models selected |
| 19491 | | |
| 19492 | | > show sel ribbons |
| 19493 | | |
| 19494 | | > select clear |
| 19495 | | |
| 19496 | | > show #!7 models |
| 19497 | | |
| 19498 | | > hide #!11 models |
| 19499 | | |
| 19500 | | > select add #7 |
| 19501 | | |
| 19502 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 19503 | | |
| 19504 | | > hide sel surfaces |
| 19505 | | |
| 19506 | | > select clear |
| 19507 | | |
| 19508 | | > select #7 |
| 19509 | | |
| 19510 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 19511 | | |
| 19512 | | > show sel atoms |
| 19513 | | |
| 19514 | | > select #7/c-f |
| 19515 | | |
| 19516 | | 7008 atoms, 7224 bonds, 4 pseudobonds, 792 residues, 2 models selected |
| 19517 | | |
| 19518 | | > hide sel ribbons |
| 19519 | | |
| 19520 | | > hide sel atoms |
| 19521 | | |
| 19522 | | > show #!8 models |
| 19523 | | |
| 19524 | | > hide #!8 models |
| 19525 | | |
| 19526 | | > show #!8 models |
| 19527 | | |
| 19528 | | > hide #!8 models |
| 19529 | | |
| 19530 | | > show #!8 models |
| 19531 | | |
| 19532 | | > hide #!8 models |
| 19533 | | |
| 19534 | | > show #!8 models |
| 19535 | | |
| 19536 | | > hide #!8 models |
| 19537 | | |
| 19538 | | > show #!8 models |
| 19539 | | |
| 19540 | | > hide #!8 models |
| 19541 | | |
| 19542 | | > show #!8 models |
| 19543 | | |
| 19544 | | > hide #!8 models |
| 19545 | | |
| 19546 | | > show #!8 models |
| 19547 | | |
| 19548 | | > hide #!8 models |
| 19549 | | |
| 19550 | | > select |
| 19551 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 19552 | | |
| 19553 | | 9756 atoms, 9630 bonds, 252 residues, 5 models selected |
| 19554 | | |
| 19555 | | > show sel atoms |
| 19556 | | |
| 19557 | | > select clear |
| 19558 | | |
| 19559 | | > show #!8 models |
| 19560 | | |
| 19561 | | > hide #!7 models |
| 19562 | | |
| 19563 | | > select |
| 19564 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 19565 | | |
| 19566 | | 9756 atoms, 9630 bonds, 252 residues, 5 models selected |
| 19567 | | |
| 19568 | | > show sel atoms |
| 19569 | | |
| 19570 | | > show #!9 models |
| 19571 | | |
| 19572 | | > hide #!8 models |
| 19573 | | |
| 19574 | | > select add #7 |
| 19575 | | |
| 19576 | | 19176 atoms, 19332 bonds, 6 pseudobonds, 1410 residues, 6 models selected |
| 19577 | | |
| 19578 | | > select subtract #7 |
| 19579 | | |
| 19580 | | 8664 atoms, 8496 bonds, 222 residues, 10 models selected |
| 19581 | | |
| 19582 | | > select add #6 |
| 19583 | | |
| 19584 | | 18282 atoms, 18390 bonds, 6 pseudobonds, 1404 residues, 5 models selected |
| 19585 | | |
| 19586 | | > select subtract #6 |
| 19587 | | |
| 19588 | | 6666 atoms, 6576 bonds, 138 residues, 9 models selected |
| 19589 | | |
| 19590 | | > select add #10 |
| 19591 | | |
| 19592 | | 16350 atoms, 16542 bonds, 6 pseudobonds, 1326 residues, 4 models selected |
| 19593 | | |
| 19594 | | > select subtract #10 |
| 19595 | | |
| 19596 | | 6510 atoms, 6426 bonds, 132 residues, 8 models selected |
| 19597 | | |
| 19598 | | > select add #27 |
| 19599 | | |
| 19600 | | 26100 atoms, 26292 bonds, 6 pseudobonds, 1326 residues, 3 models selected |
| 19601 | | |
| 19602 | | > select subtract #27 |
| 19603 | | |
| 19604 | | 1962 atoms, 1920 bonds, 42 residues, 1 model selected |
| 19605 | | |
| 19606 | | > select clear |
| 19607 | | |
| 19608 | | > show #!7 models |
| 19609 | | |
| 19610 | | > hide #!7 models |
| 19611 | | |
| 19612 | | > show #!7 models |
| 19613 | | |
| 19614 | | > hide #!7 models |
| 19615 | | |
| 19616 | | > show #!7 models |
| 19617 | | |
| 19618 | | > hide #!7 models |
| 19619 | | |
| 19620 | | > hide #!9 models |
| 19621 | | |
| 19622 | | > show #!7 models |
| 19623 | | |
| 19624 | | > show #!8 models |
| 19625 | | |
| 19626 | | > hide #!8 models |
| 19627 | | |
| 19628 | | > show #!9 models |
| 19629 | | |
| 19630 | | > hide #!7 models |
| 19631 | | |
| 19632 | | > show #!7 models |
| 19633 | | |
| 19634 | | > select #7,9/c-f |
| 19635 | | |
| 19636 | | 14772 atoms, 15148 bonds, 8 pseudobonds, 1612 residues, 4 models selected |
| 19637 | | |
| 19638 | | > hide sel atoms |
| 19639 | | |
| 19640 | | > hide sel ribbons |
| 19641 | | |
| 19642 | | > select clear |
| 19643 | | |
| 19644 | | > select #9 |
| 19645 | | |
| 19646 | | 11646 atoms, 11886 bonds, 6 pseudobonds, 1230 residues, 2 models selected |
| 19647 | | |
| 19648 | | > show sel atoms |
| 19649 | | |
| 19650 | | > select #9/c-f |
| 19651 | | |
| 19652 | | 7764 atoms, 7924 bonds, 4 pseudobonds, 820 residues, 2 models selected |
| 19653 | | |
| 19654 | | > hide sel atoms |
| 19655 | | |
| 19656 | | > select clear |
| 19657 | | |
| 19658 | | > hide #!7 models |
| 19659 | | |
| 19660 | | > show #!7 models |
| 19661 | | |
| 19662 | | > hide #!7 models |
| 19663 | | |
| 19664 | | > show #!7 models |
| 19665 | | |
| 19666 | | > hide #!7 models |
| 19667 | | |
| 19668 | | > show #!7 models |
| 19669 | | |
| 19670 | | > hide #!7 models |
| 19671 | | |
| 19672 | | > show #!7 models |
| 19673 | | |
| 19674 | | > hide #!7 models |
| 19675 | | |
| 19676 | | > show #!7 models |
| 19677 | | |
| 19678 | | > hide #!7 models |
| 19679 | | |
| 19680 | | > show #!7 models |
| 19681 | | |
| 19682 | | > hide #!7 models |
| 19683 | | |
| 19684 | | > hide #!9 models |
| 19685 | | |
| 19686 | | > show #!9 models |
| 19687 | | |
| 19688 | | > show #!7 models |
| 19689 | | |
| 19690 | | > hide #!7 models |
| 19691 | | |
| 19692 | | > show #!4 models |
| 19693 | | |
| 19694 | | > volume #4 level 0.309 |
| 19695 | | |
| 19696 | | > volume #4 level 0.22 |
| 19697 | | |
| 19698 | | > hide #!4 models |
| 19699 | | |
| 19700 | | > show #!7 models |
| 19701 | | |
| 19702 | | > hide #!7 models |
| 19703 | | |
| 19704 | | > show #!7 models |
| 19705 | | |
| 19706 | | > hide #!9 models |
| 19707 | | |
| 19708 | | > show #!9 models |
| 19709 | | |
| 19710 | | > hide #!9 models |
| 19711 | | |
| 19712 | | > show #!9 models |
| 19713 | | |
| 19714 | | > hide #!9 models |
| 19715 | | |
| 19716 | | > show #!8 models |
| 19717 | | |
| 19718 | | > hide #!8 models |
| 19719 | | |
| 19720 | | > show #!9 models |
| 19721 | | |
| 19722 | | > hide #!9 models |
| 19723 | | |
| 19724 | | > show #!9 models |
| 19725 | | |
| 19726 | | > hide #!9 models |
| 19727 | | |
| 19728 | | > show #!9 models |
| 19729 | | |
| 19730 | | > hide #!7 models |
| 19731 | | |
| 19732 | | > show #!7 models |
| 19733 | | |
| 19734 | | > hide #!9 models |
| 19735 | | |
| 19736 | | > show #!9 models |
| 19737 | | |
| 19738 | | > hide #!9 models |
| 19739 | | |
| 19740 | | > show #!9 models |
| 19741 | | |
| 19742 | | > hide #!9 models |
| 19743 | | |
| 19744 | | > hide #!7 models |
| 19745 | | |
| 19746 | | > show #!9 models |
| 19747 | | |
| 19748 | | > show #!2 models |
| 19749 | | |
| 19750 | | > hide #!2 models |
| 19751 | | |
| 19752 | | > show #!4 models |
| 19753 | | |
| 19754 | | > hide #!9 models |
| 19755 | | |
| 19756 | | > clip front 0 |
| 19757 | | |
| 19758 | | > show #!9 models |
| 19759 | | |
| 19760 | | > show #!11 models |
| 19761 | | |
| 19762 | | > hide #!11 models |
| 19763 | | |
| 19764 | | > hide #!9 models |
| 19765 | | |
| 19766 | | > show #!9 models |
| 19767 | | |
| 19768 | | > show #!9 atoms |
| 19769 | | |
| 19770 | | > volume #4 level 0.1589 |
| 19771 | | |
| 19772 | | > show #!2 models |
| 19773 | | |
| 19774 | | > show #!7 models |
| 19775 | | |
| 19776 | | > hide #!9 models |
| 19777 | | |
| 19778 | | > show #!7 cartoons |
| 19779 | | |
| 19780 | | > show #!7 atoms |
| 19781 | | |
| 19782 | | > hide #!7 models |
| 19783 | | |
| 19784 | | > show #!7 models |
| 19785 | | |
| 19786 | | > hide #!4 models |
| 19787 | | |
| 19788 | | > volume #2 level 0.109 |
| 19789 | | |
| 19790 | | > volume #2 level 0.1065 |
| 19791 | | |
| 19792 | | > volume #2 level 0.09384 |
| 19793 | | |
| 19794 | | > save "C:/Users/OJS/OneDrive - |
| 19795 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 19796 | | |
| 19797 | | ——— End of log from Tue Oct 31 21:23:00 2023 ——— |
| 19798 | | |
| 19799 | | opened ChimeraX session |
| 19800 | | |
| 19801 | | > open |
| 19802 | | > C:/Users/OJS/Desktop/Phenix/220302_Cx43_N55H_CBX/RealSpaceRefine_204/231106_From203_real_space_refined_204.pdb |
| 19803 | | |
| 19804 | | Chain information for 231106_From203_real_space_refined_204.pdb #12 |
| 19805 | | --- |
| 19806 | | Chain | Description |
| 19807 | | A B C D E F | No description available |
| 19808 | | |
| 19809 | | |
| 19810 | | > color #12 #00aa00ff |
| 19811 | | |
| 19812 | | > select add #12 |
| 19813 | | |
| 19814 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 19815 | | |
| 19816 | | > hide sel atoms |
| 19817 | | |
| 19818 | | > show sel cartoons |
| 19819 | | |
| 19820 | | > ui mousemode right "translate selected models" |
| 19821 | | |
| 19822 | | > view matrix models #12,1,0,0,-31.962,0,1,0,-32.831,0,0,1,-26.213 |
| 19823 | | |
| 19824 | | > ui tool show "Fit in Map" |
| 19825 | | |
| 19826 | | > fitmap #12 inMap #2 |
| 19827 | | |
| 19828 | | Fit molecule 231106_From203_real_space_refined_204.pdb (#12) to map |
| 19829 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 19830 | | average map value = 0.2279, steps = 84 |
| 19831 | | shifted from previous position = 3.41 |
| 19832 | | rotated from previous position = 8.83 degrees |
| 19833 | | atoms outside contour = 2334, contour level = 0.093838 |
| 19834 | | |
| 19835 | | Position of 231106_From203_real_space_refined_204.pdb (#12) relative to |
| 19836 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 19837 | | Matrix rotation and translation |
| 19838 | | 0.99999994 -0.00024794 -0.00023259 0.08348348 |
| 19839 | | 0.00024801 0.99999992 0.00029823 -0.09746148 |
| 19840 | | 0.00023251 -0.00029829 0.99999993 0.01987940 |
| 19841 | | Axis -0.65950004 -0.51420733 0.54831608 |
| 19842 | | Axis point 0.00000000 55.61692139 316.54203033 |
| 19843 | | Rotation angle (degrees) 0.02591189 |
| 19844 | | Shift along axis 0.00595824 |
| 19845 | | |
| 19846 | | |
| 19847 | | > select clear |
| 19848 | | |
| 19849 | | > select |
| 19850 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 19851 | | |
| 19852 | | 10848 atoms, 10764 bonds, 282 residues, 6 models selected |
| 19853 | | |
| 19854 | | > show sel atoms |
| 19855 | | |
| 19856 | | > select clear |
| 19857 | | |
| 19858 | | > select ::name="6OU" |
| 19859 | | |
| 19860 | | 3528 atoms, 3456 bonds, 72 residues, 4 models selected |
| 19861 | | |
| 19862 | | > color sel gray |
| 19863 | | |
| 19864 | | > color sel byhetero |
| 19865 | | |
| 19866 | | > select ::name="CLR" |
| 19867 | | |
| 19868 | | 1008 atoms, 1116 bonds, 36 residues, 2 models selected |
| 19869 | | |
| 19870 | | > color sel yellow |
| 19871 | | |
| 19872 | | > color sel byhetero |
| 19873 | | |
| 19874 | | > select clear |
| 19875 | | |
| 19876 | | > hide #!7 models |
| 19877 | | |
| 19878 | | > volume #2 level 0.07333 |
| 19879 | | |
| 19880 | | > select add #12 |
| 19881 | | |
| 19882 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 19883 | | |
| 19884 | | > ui tool show "Selection Inspector" |
| 19885 | | |
| 19886 | | > size =sel stickRadius 0.3 |
| 19887 | | |
| 19888 | | Changed 10836 bond radii |
| 19889 | | |
| 19890 | | > select clear |
| 19891 | | |
| 19892 | | > close #8 |
| 19893 | | |
| 19894 | | > close #11 |
| 19895 | | |
| 19896 | | > volume #2 level 0.1015 |
| 19897 | | |
| 19898 | | > select #12 |
| 19899 | | |
| 19900 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 19901 | | |
| 19902 | | > show sel atoms |
| 19903 | | |
| 19904 | | > style sel stick |
| 19905 | | |
| 19906 | | Changed 10512 atom styles |
| 19907 | | |
| 19908 | | > color sequential lbyhetero |
| 19909 | | |
| 19910 | | Expected one of 'chains', 'polymers', 'residues', or 'structures' or a keyword |
| 19911 | | |
| 19912 | | > color sel byhetero |
| 19913 | | |
| 19914 | | > select clear |
| 19915 | | |
| 19916 | | > volume #2 level 0.08615 |
| 19917 | | |
| 19918 | | > mlp #!12 |
| 19919 | | |
| 19920 | | Map values for surface "231106_From203_real_space_refined_204.pdb_A SES |
| 19921 | | surface": minimum -25.04, mean 0.3091, maximum 25.3 |
| 19922 | | Map values for surface "231106_From203_real_space_refined_204.pdb_B SES |
| 19923 | | surface": minimum -25, mean 0.3561, maximum 25.35 |
| 19924 | | Map values for surface "231106_From203_real_space_refined_204.pdb_C SES |
| 19925 | | surface": minimum -25.7, mean 0.3617, maximum 25.14 |
| 19926 | | Map values for surface "231106_From203_real_space_refined_204.pdb_D SES |
| 19927 | | surface": minimum -25.81, mean 0.2966, maximum 24.44 |
| 19928 | | Map values for surface "231106_From203_real_space_refined_204.pdb_E SES |
| 19929 | | surface": minimum -25.23, mean 0.3748, maximum 25.49 |
| 19930 | | Map values for surface "231106_From203_real_space_refined_204.pdb_F SES |
| 19931 | | surface": minimum -26.28, mean 0.3046, maximum 24.61 |
| 19932 | | To also show corresponding color key, enter the above mlp command and add key |
| 19933 | | true |
| 19934 | | |
| 19935 | | > hide #!12 models |
| 19936 | | |
| 19937 | | > hide #!2 models |
| 19938 | | |
| 19939 | | > show #!4 models |
| 19940 | | |
| 19941 | | > show #!9 models |
| 19942 | | |
| 19943 | | > color #4 #00ff7f80 models |
| 19944 | | |
| 19945 | | > color #4 #00ff0080 models |
| 19946 | | |
| 19947 | | > color #4 #ff000080 models |
| 19948 | | |
| 19949 | | > color #4 #ffff7f80 models |
| 19950 | | |
| 19951 | | > lighting full |
| 19952 | | |
| 19953 | | [Repeated 1 time(s)] |
| 19954 | | |
| 19955 | | > lighting soft |
| 19956 | | |
| 19957 | | > lighting full |
| 19958 | | |
| 19959 | | > hide #!9 models |
| 19960 | | |
| 19961 | | > hide #!4 models |
| 19962 | | |
| 19963 | | > show #!2 models |
| 19964 | | |
| 19965 | | > show #!12 models |
| 19966 | | |
| 19967 | | > show #!9 models |
| 19968 | | |
| 19969 | | > hide #!9 models |
| 19970 | | |
| 19971 | | > show #!9 models |
| 19972 | | |
| 19973 | | > hide #!12 models |
| 19974 | | |
| 19975 | | > mlp #!9 |
| 19976 | | |
| 19977 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_A SES surface": |
| 19978 | | minimum -29.57, mean -0.08785, maximum 24.29 |
| 19979 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_B SES surface": |
| 19980 | | minimum -29.15, mean -0.01704, maximum 25.25 |
| 19981 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_C SES surface": |
| 19982 | | minimum -29.79, mean -0.03799, maximum 24.31 |
| 19983 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_D SES surface": |
| 19984 | | minimum -29.73, mean -0.06976, maximum 24.07 |
| 19985 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_E SES surface": |
| 19986 | | minimum -28.45, mean -0.05459, maximum 25.28 |
| 19987 | | Map values for surface "231026_N55H_MBCD_37_wo_water.pdb_F SES surface": |
| 19988 | | minimum -29.45, mean -0.06095, maximum 24.67 |
| 19989 | | To also show corresponding color key, enter the above mlp command and add key |
| 19990 | | true |
| 19991 | | |
| 19992 | | > hide #!2 models |
| 19993 | | |
| 19994 | | > show #!12 models |
| 19995 | | |
| 19996 | | > hide #!12 models |
| 19997 | | |
| 19998 | | > show #!12 models |
| 19999 | | |
| 20000 | | > hide #!12 models |
| 20001 | | |
| 20002 | | > show #!12 models |
| 20003 | | |
| 20004 | | > hide #!12 models |
| 20005 | | |
| 20006 | | > show #!12 models |
| 20007 | | |
| 20008 | | > hide #!12 models |
| 20009 | | |
| 20010 | | > show #!12 models |
| 20011 | | |
| 20012 | | > hide #!12 models |
| 20013 | | |
| 20014 | | > hide #!9 models |
| 20015 | | |
| 20016 | | > close #9 |
| 20017 | | |
| 20018 | | > show #!7 models |
| 20019 | | |
| 20020 | | > show #!10 models |
| 20021 | | |
| 20022 | | > hide #!10 models |
| 20023 | | |
| 20024 | | > show #!10 models |
| 20025 | | |
| 20026 | | > hide #!10 models |
| 20027 | | |
| 20028 | | > show #!12 models |
| 20029 | | |
| 20030 | | > hide #!7,12 atoms |
| 20031 | | |
| 20032 | | > show #!7,12 atoms |
| 20033 | | |
| 20034 | | > hide #!7 models |
| 20035 | | |
| 20036 | | > hide #!12 models |
| 20037 | | |
| 20038 | | > show #!12 models |
| 20039 | | |
| 20040 | | > show #!2 models |
| 20041 | | |
| 20042 | | > show #!7 models |
| 20043 | | |
| 20044 | | > hide #!7 models |
| 20045 | | |
| 20046 | | > hide #!12 models |
| 20047 | | |
| 20048 | | > hide #!2 models |
| 20049 | | |
| 20050 | | > show #!4 models |
| 20051 | | |
| 20052 | | > hide #!4 models |
| 20053 | | |
| 20054 | | > show #!5 models |
| 20055 | | |
| 20056 | | > hide #!5 models |
| 20057 | | |
| 20058 | | > show #!6 models |
| 20059 | | |
| 20060 | | > hide #!6 models |
| 20061 | | |
| 20062 | | > show #!10 models |
| 20063 | | |
| 20064 | | > hide #!10 models |
| 20065 | | |
| 20066 | | > show #!5 models |
| 20067 | | |
| 20068 | | > hide #!5 models |
| 20069 | | |
| 20070 | | > show #!4 models |
| 20071 | | |
| 20072 | | > color #4 #aaff7f80 models |
| 20073 | | |
| 20074 | | > color #4 #aaff0080 models |
| 20075 | | |
| 20076 | | > open |
| 20077 | | > C:/Users/OJS/Desktop/Phenix/230901_MBCD_Chol_N55H/RealSpaceRefine_44/231106_From39-coot-1_real_space_refined_044.pdb |
| 20078 | | |
| 20079 | | Chain information for 231106_From39-coot-1_real_space_refined_044.pdb #8 |
| 20080 | | --- |
| 20081 | | Chain | Description |
| 20082 | | A B C D E F | No description available |
| 20083 | | |
| 20084 | | |
| 20085 | | > volume #4 level 0.1926 |
| 20086 | | |
| 20087 | | > volume #4 level 0.142 |
| 20088 | | |
| 20089 | | > volume #4 level 0.1251 |
| 20090 | | |
| 20091 | | > close #10 |
| 20092 | | |
| 20093 | | > close #8 |
| 20094 | | |
| 20095 | | > hide #!4 models |
| 20096 | | |
| 20097 | | > color #2 #00aa0080 models |
| 20098 | | |
| 20099 | | > color #4 #00ff0080 models |
| 20100 | | |
| 20101 | | > color #5 #aaff0080 models |
| 20102 | | |
| 20103 | | > color #5 #aaff7f80 models |
| 20104 | | |
| 20105 | | > save "C:/Users/OJS/OneDrive - |
| 20106 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 20107 | | |
| 20108 | | ——— End of log from Tue Nov 7 00:43:02 2023 ——— |
| 20109 | | |
| 20110 | | opened ChimeraX session |
| 20111 | | |
| 20112 | | > show #!2 models |
| 20113 | | |
| 20114 | | > hide #!2 models |
| 20115 | | |
| 20116 | | > show #!4 models |
| 20117 | | |
| 20118 | | > open |
| 20119 | | > C:/Users/OJS/Desktop/Phenix/230901_MBCD_Chol_N55H/RealSpaceRefine_45/231106_From44-coot-2_real_space_refined_045.pdb |
| 20120 | | |
| 20121 | | Chain information for 231106_From44-coot-2_real_space_refined_045.pdb #8 |
| 20122 | | --- |
| 20123 | | Chain | Description |
| 20124 | | A B C D E F | No description available |
| 20125 | | |
| 20126 | | |
| 20127 | | > color #8 lime |
| 20128 | | |
| 20129 | | > hide #!8 atoms |
| 20130 | | |
| 20131 | | > show #!8 cartoons |
| 20132 | | |
| 20133 | | > select #8 |
| 20134 | | |
| 20135 | | 11718 atoms, 11976 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 20136 | | |
| 20137 | | > color #8 lime |
| 20138 | | |
| 20139 | | > ui tool show "Selection Inspector" |
| 20140 | | |
| 20141 | | > size =sel stickRadius 0.3 |
| 20142 | | |
| 20143 | | Changed 11976 bond radii |
| 20144 | | |
| 20145 | | > ui tool show "Selection Inspector" |
| 20146 | | |
| 20147 | | > setattr =sel p display false |
| 20148 | | |
| 20149 | | Assigning display attribute to 6 items |
| 20150 | | |
| 20151 | | > setattr =sel p display true |
| 20152 | | |
| 20153 | | Assigning display attribute to 6 items |
| 20154 | | |
| 20155 | | > setattr =sel p display false |
| 20156 | | |
| 20157 | | Assigning display attribute to 6 items |
| 20158 | | |
| 20159 | | > hide #!8 models |
| 20160 | | |
| 20161 | | > show #!8 models |
| 20162 | | |
| 20163 | | > select clear |
| 20164 | | |
| 20165 | | > select |
| 20166 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 20167 | | |
| 20168 | | 10764 atoms, 10704 bonds, 282 residues, 5 models selected |
| 20169 | | |
| 20170 | | > show sel atoms |
| 20171 | | |
| 20172 | | > color sel yellow |
| 20173 | | |
| 20174 | | > color sel byhetero |
| 20175 | | |
| 20176 | | > select clear |
| 20177 | | |
| 20178 | | > volume #4 level 0.1663 |
| 20179 | | |
| 20180 | | > volume #4 level 0.1457 |
| 20181 | | |
| 20182 | | > volume #4 level 0.1251 |
| 20183 | | |
| 20184 | | > close #8 |
| 20185 | | |
| 20186 | | > rename #3 id #30 |
| 20187 | | |
| 20188 | | > rename #4 id #3 |
| 20189 | | |
| 20190 | | > rename #5 id #4 |
| 20191 | | |
| 20192 | | > rename #4 N55H_MBCD_P76_J149_007_volume_map_sharp |
| 20193 | | |
| 20194 | | > select clear |
| 20195 | | |
| 20196 | | > rename #30 id #5 |
| 20197 | | |
| 20198 | | > color #2 #00aaff80 models |
| 20199 | | |
| 20200 | | > color #3 #00ffff80 models |
| 20201 | | |
| 20202 | | > color #4 #aaffff80 models |
| 20203 | | |
| 20204 | | > show #!4 models |
| 20205 | | |
| 20206 | | > hide #!4 models |
| 20207 | | |
| 20208 | | > show #!12 models |
| 20209 | | |
| 20210 | | > hide #!3 models |
| 20211 | | |
| 20212 | | > show #!2 models |
| 20213 | | |
| 20214 | | > volume #2 level 0.06737 |
| 20215 | | |
| 20216 | | > volume #2 level 0.0705 |
| 20217 | | |
| 20218 | | > close #7 |
| 20219 | | |
| 20220 | | > close #12 |
| 20221 | | |
| 20222 | | > show #!6 models |
| 20223 | | |
| 20224 | | > hide #!6 models |
| 20225 | | |
| 20226 | | > show #!6 models |
| 20227 | | |
| 20228 | | > close #6 |
| 20229 | | |
| 20230 | | > show #!3 models |
| 20231 | | |
| 20232 | | > hide #!2 models |
| 20233 | | |
| 20234 | | > show #!4 models |
| 20235 | | |
| 20236 | | > hide #!3 models |
| 20237 | | |
| 20238 | | > hide #!4 models |
| 20239 | | |
| 20240 | | > show #!2 models |
| 20241 | | |
| 20242 | | > open "C:/Users/OJS/OneDrive - |
| 20243 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231106_N55H_MBCD10_45.pdb" |
| 20244 | | |
| 20245 | | Chain information for 231106_N55H_MBCD10_45.pdb #6 |
| 20246 | | --- |
| 20247 | | Chain | Description |
| 20248 | | A B C D E F | No description available |
| 20249 | | |
| 20250 | | |
| 20251 | | > rename #5 id #8 |
| 20252 | | |
| 20253 | | > rename #8 id #5 |
| 20254 | | |
| 20255 | | > rename #6 id #8 |
| 20256 | | |
| 20257 | | > color #8 cyan |
| 20258 | | |
| 20259 | | > hide #!8 atoms |
| 20260 | | |
| 20261 | | > show #!8 cartoons |
| 20262 | | |
| 20263 | | > select clear |
| 20264 | | |
| 20265 | | > color #8 cyan |
| 20266 | | |
| 20267 | | > select clear |
| 20268 | | |
| 20269 | | > open "C:/Users/OJS/OneDrive - |
| 20270 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231106_N55H_Chol_204.pdb" |
| 20271 | | |
| 20272 | | Chain information for 231106_N55H_Chol_204.pdb #6 |
| 20273 | | --- |
| 20274 | | Chain | Description |
| 20275 | | A B C D E F | No description available |
| 20276 | | |
| 20277 | | |
| 20278 | | > color #6 #00aaffff |
| 20279 | | |
| 20280 | | > rename #6 id #7 |
| 20281 | | |
| 20282 | | > hide #!7-8 atoms |
| 20283 | | |
| 20284 | | > show #!7-8 cartoons |
| 20285 | | |
| 20286 | | > hide #!2 models |
| 20287 | | |
| 20288 | | > hide #!8 models |
| 20289 | | |
| 20290 | | > show #!2 models |
| 20291 | | |
| 20292 | | > ui mousemode right "translate selected models" |
| 20293 | | |
| 20294 | | > select add #2 |
| 20295 | | |
| 20296 | | 3 models selected |
| 20297 | | |
| 20298 | | > view matrix models |
| 20299 | | > #2,0.98819,-0.15325,5.4041e-05,1.1662,0.15325,0.98819,0.00016195,-58.513,-7.8221e-05,-0.00015176,1,-30.584 |
| 20300 | | |
| 20301 | | > ui tool show "Fit in Map" |
| 20302 | | |
| 20303 | | > fitmap #2 inMap #1 |
| 20304 | | |
| 20305 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 20306 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 20307 | | correlation = 0.348, correlation about mean = 0.05369, overlap = 2731 |
| 20308 | | steps = 120, shift = 3.5, angle = 3.12 degrees |
| 20309 | | |
| 20310 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 20311 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 20312 | | Matrix rotation and translation |
| 20313 | | -0.98835637 0.14298832 -0.05201950 312.93290407 |
| 20314 | | 0.14280008 0.98972436 0.00733679 -25.78332157 |
| 20315 | | 0.05253404 -0.00017703 -0.99861912 338.99681230 |
| 20316 | | Axis -0.07168074 -0.99742601 -0.00179579 |
| 20317 | | Axis point 152.93648426 0.00000000 173.63788206 |
| 20318 | | Rotation angle (degrees) 176.99565563 |
| 20319 | | Shift along axis 2.67692744 |
| 20320 | | |
| 20321 | | |
| 20322 | | > fitmap #2 inMap #1 |
| 20323 | | |
| 20324 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 20325 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 20326 | | correlation = 0.3481, correlation about mean = 0.05382, overlap = 2731 |
| 20327 | | steps = 48, shift = 0.017, angle = 0.00844 degrees |
| 20328 | | |
| 20329 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 20330 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 20331 | | Matrix rotation and translation |
| 20332 | | -0.98835260 0.14298090 -0.05211132 312.94449589 |
| 20333 | | 0.14278663 0.98972544 0.00745119 -25.79570256 |
| 20334 | | 0.05264128 -0.00007640 -0.99861348 338.97708414 |
| 20335 | | Axis -0.07167567 -0.99742628 -0.00184973 |
| 20336 | | Axis point 152.93442310 0.00000000 173.63672014 |
| 20337 | | Rotation angle (degrees) 176.98993098 |
| 20338 | | Shift along axis 2.67178853 |
| 20339 | | |
| 20340 | | |
| 20341 | | > fitmap #2 inMap #1 |
| 20342 | | |
| 20343 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 20344 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 20345 | | correlation = 0.348, correlation about mean = 0.05372, overlap = 2731 |
| 20346 | | steps = 40, shift = 0.0132, angle = 0.00563 degrees |
| 20347 | | |
| 20348 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 20349 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 20350 | | Matrix rotation and translation |
| 20351 | | -0.98835718 0.14296677 -0.05206314 312.94331226 |
| 20352 | | 0.14277695 0.98972747 0.00736629 -25.78425381 |
| 20353 | | 0.05258146 -0.00015289 -0.99861662 338.98826644 |
| 20354 | | Axis -0.07166956 -0.99742679 -0.00180925 |
| 20355 | | Axis point 152.93780867 0.00000000 173.63750346 |
| 20356 | | Rotation angle (degrees) 176.99303874 |
| 20357 | | Shift along axis 2.67608216 |
| 20358 | | |
| 20359 | | |
| 20360 | | > fitmap #2 inMap #1 |
| 20361 | | |
| 20362 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 20363 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 20364 | | correlation = 0.3481, correlation about mean = 0.05379, overlap = 2731 |
| 20365 | | steps = 44, shift = 0.00958, angle = 0.0191 degrees |
| 20366 | | |
| 20367 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 20368 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 20369 | | Matrix rotation and translation |
| 20370 | | -0.98836985 0.14285829 -0.05212050 312.97467309 |
| 20371 | | 0.14265229 0.98974314 0.00767047 -25.81854445 |
| 20372 | | 0.05268170 0.00014615 -0.99861134 338.93045550 |
| 20373 | | Axis -0.07161095 -0.99743071 -0.00196054 |
| 20374 | | Axis point 152.94802402 0.00000000 173.61717846 |
| 20375 | | Rotation angle (degrees) 176.98851788 |
| 20376 | | Shift along axis 2.67530786 |
| 20377 | | |
| 20378 | | |
| 20379 | | > show #!1 models |
| 20380 | | |
| 20381 | | > view matrix models |
| 20382 | | > #2,0.98903,-0.13828,0.051926,-14.26,0.13807,0.99039,0.007534,-58.041,-0.052469,-0.00028172,0.99862,-16.641 |
| 20383 | | |
| 20384 | | > fitmap #2 inMap #1 |
| 20385 | | |
| 20386 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 20387 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 20388 | | correlation = 0.8523, correlation about mean = 0.7042, overlap = 1.013e+04 |
| 20389 | | steps = 300, shift = 5.21, angle = 3.15 degrees |
| 20390 | | |
| 20391 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 20392 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 20393 | | Matrix rotation and translation |
| 20394 | | -0.98734240 0.15860323 -0.00001552 307.17409740 |
| 20395 | | 0.15860322 0.98734239 0.00011356 -20.65671480 |
| 20396 | | 0.00003333 0.00010966 -0.99999999 339.16336740 |
| 20397 | | Axis -0.07954955 -0.99683091 -0.00005347 |
| 20398 | | Axis point 154.40919289 0.00000000 169.58412329 |
| 20399 | | Rotation angle (degrees) 179.99859620 |
| 20400 | | Shift along axis -3.86244374 |
| 20401 | | |
| 20402 | | |
| 20403 | | > fitmap #2 inMap #1 |
| 20404 | | |
| 20405 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 20406 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 20407 | | correlation = 0.8523, correlation about mean = 0.7042, overlap = 1.013e+04 |
| 20408 | | steps = 28, shift = 0.0184, angle = 0.0101 degrees |
| 20409 | | |
| 20410 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 20411 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 20412 | | Matrix rotation and translation |
| 20413 | | -0.98734242 0.15860309 0.00000896 307.16852403 |
| 20414 | | 0.15860309 0.98734242 -0.00006158 -20.60892362 |
| 20415 | | -0.00001861 -0.00005938 -1.00000000 339.19999708 |
| 20416 | | Axis 0.07956113 0.99682999 -0.00002588 |
| 20417 | | Axis point 154.40788038 0.00000000 169.59866656 |
| 20418 | | Rotation angle (degrees) 179.99920752 |
| 20419 | | Shift along axis 3.88630187 |
| 20420 | | |
| 20421 | | |
| 20422 | | > fitmap #2 inMap #1 |
| 20423 | | |
| 20424 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 20425 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 20426 | | correlation = 0.8523, correlation about mean = 0.7042, overlap = 1.013e+04 |
| 20427 | | steps = 28, shift = 0.0149, angle = 8.02e-05 degrees |
| 20428 | | |
| 20429 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 20430 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 20431 | | Matrix rotation and translation |
| 20432 | | -0.98734237 0.15860337 0.00001031 307.16957946 |
| 20433 | | 0.15860337 0.98734237 -0.00006132 -20.62382759 |
| 20434 | | -0.00001990 -0.00005891 -1.00000000 339.20005486 |
| 20435 | | Axis 0.07956062 0.99683003 -0.00002609 |
| 20436 | | Axis point 154.40910999 0.00000000 169.59859144 |
| 20437 | | Rotation angle (degrees) 179.99913182 |
| 20438 | | Shift along axis 3.87130268 |
| 20439 | | |
| 20440 | | |
| 20441 | | > fitmap #2 inMap #1 |
| 20442 | | |
| 20443 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 20444 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 20445 | | correlation = 0.8523, correlation about mean = 0.7042, overlap = 1.013e+04 |
| 20446 | | steps = 28, shift = 0.0167, angle = 6.98e-06 degrees |
| 20447 | | |
| 20448 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 20449 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 20450 | | Matrix rotation and translation |
| 20451 | | -0.98734239 0.15860326 0.00001034 307.16794444 |
| 20452 | | 0.15860326 0.98734239 -0.00006134 -20.60719415 |
| 20453 | | -0.00001994 -0.00005892 -1.00000000 339.20016961 |
| 20454 | | Axis 0.07956055 0.99683004 -0.00002610 |
| 20455 | | Axis point 154.40763113 0.00000000 169.59864596 |
| 20456 | | Rotation angle (degrees) 179.99912966 |
| 20457 | | Shift along axis 3.88772456 |
| 20458 | | |
| 20459 | | |
| 20460 | | > fitmap #2 inMap #1 |
| 20461 | | |
| 20462 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 20463 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 20464 | | correlation = 0.8523, correlation about mean = 0.7042, overlap = 1.013e+04 |
| 20465 | | steps = 28, shift = 0.0175, angle = 5.09e-05 degrees |
| 20466 | | |
| 20467 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 20468 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 20469 | | Matrix rotation and translation |
| 20470 | | -0.98734235 0.15860352 0.00001117 307.16961111 |
| 20471 | | 0.15860352 0.98734235 -0.00006114 -20.62471232 |
| 20472 | | -0.00002072 -0.00005860 -1.00000000 339.20016224 |
| 20473 | | Axis 0.07956034 0.99683005 -0.00002618 |
| 20474 | | Axis point 154.40922992 0.00000000 169.59857927 |
| 20475 | | Rotation angle (degrees) 179.99908350 |
| 20476 | | Shift along axis 3.87030513 |
| 20477 | | |
| 20478 | | |
| 20479 | | > hide #!2 models |
| 20480 | | |
| 20481 | | > show #!2 models |
| 20482 | | |
| 20483 | | > hide #!1 models |
| 20484 | | |
| 20485 | | > select add #2 |
| 20486 | | |
| 20487 | | 3 models selected |
| 20488 | | |
| 20489 | | > select subtract #2 |
| 20490 | | |
| 20491 | | Nothing selected |
| 20492 | | |
| 20493 | | > select add #7 |
| 20494 | | |
| 20495 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 20496 | | |
| 20497 | | > view matrix models #7,1,0,0,-31.253,0,1,0,-31.648,0,0,1,-24.36 |
| 20498 | | |
| 20499 | | > fitmap #7 inMap #2 |
| 20500 | | |
| 20501 | | Fit molecule 231106_N55H_Chol_204.pdb (#7) to map |
| 20502 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 20503 | | average map value = 0.2279, steps = 84 |
| 20504 | | shifted from previous position = 1.64 |
| 20505 | | rotated from previous position = 8.88 degrees |
| 20506 | | atoms outside contour = 1328, contour level = 0.070496 |
| 20507 | | |
| 20508 | | Position of 231106_N55H_Chol_204.pdb (#7) relative to |
| 20509 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 20510 | | Matrix rotation and translation |
| 20511 | | 0.99999996 -0.00025799 -0.00014421 0.06780241 |
| 20512 | | 0.00025798 0.99999997 -0.00004992 -0.02957928 |
| 20513 | | 0.00014422 0.00004989 0.99999999 -0.02328160 |
| 20514 | | Axis 0.16649299 -0.48112773 0.86069518 |
| 20515 | | Axis point 104.46909328 259.25863117 0.00000000 |
| 20516 | | Rotation angle (degrees) 0.01717370 |
| 20517 | | Shift along axis 0.00548167 |
| 20518 | | |
| 20519 | | |
| 20520 | | > fitmap #7 inMap #2 |
| 20521 | | |
| 20522 | | Fit molecule 231106_N55H_Chol_204.pdb (#7) to map |
| 20523 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 20524 | | average map value = 0.2279, steps = 28 |
| 20525 | | shifted from previous position = 0.0149 |
| 20526 | | rotated from previous position = 0.0267 degrees |
| 20527 | | atoms outside contour = 1329, contour level = 0.070496 |
| 20528 | | |
| 20529 | | Position of 231106_N55H_Chol_204.pdb (#7) relative to |
| 20530 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 20531 | | Matrix rotation and translation |
| 20532 | | 0.99999996 -0.00024732 -0.00009620 0.05646554 |
| 20533 | | 0.00024736 0.99999988 0.00041352 -0.12155893 |
| 20534 | | 0.00009609 -0.00041354 0.99999991 0.06175906 |
| 20535 | | Axis -0.84161578 -0.19567378 0.50338320 |
| 20536 | | Axis point 0.00000000 140.32889418 290.52280633 |
| 20537 | | Rotation angle (degrees) 0.02815246 |
| 20538 | | Shift along axis 0.00735208 |
| 20539 | | |
| 20540 | | |
| 20541 | | > fitmap #7 inMap #2 |
| 20542 | | |
| 20543 | | Fit molecule 231106_N55H_Chol_204.pdb (#7) to map |
| 20544 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 20545 | | average map value = 0.2279, steps = 28 |
| 20546 | | shifted from previous position = 0.017 |
| 20547 | | rotated from previous position = 0.0275 degrees |
| 20548 | | atoms outside contour = 1331, contour level = 0.070496 |
| 20549 | | |
| 20550 | | Position of 231106_N55H_Chol_204.pdb (#7) relative to |
| 20551 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 20552 | | Matrix rotation and translation |
| 20553 | | 0.99999996 -0.00024835 -0.00009275 0.05549170 |
| 20554 | | 0.00024834 0.99999997 -0.00006693 -0.02291039 |
| 20555 | | 0.00009276 0.00006691 0.99999999 -0.01756373 |
| 20556 | | Axis 0.24475044 -0.33924523 0.90830055 |
| 20557 | | Axis point 84.90455329 218.10784854 0.00000000 |
| 20558 | | Rotation angle (degrees) 0.01566571 |
| 20559 | | Shift along axis 0.00540071 |
| 20560 | | |
| 20561 | | |
| 20562 | | > select clear |
| 20563 | | |
| 20564 | | > hide #!7 models |
| 20565 | | |
| 20566 | | > hide #!2 models |
| 20567 | | |
| 20568 | | > show #!3 models |
| 20569 | | |
| 20570 | | > show #!2 models |
| 20571 | | |
| 20572 | | > hide #!2 models |
| 20573 | | |
| 20574 | | > show #!2 models |
| 20575 | | |
| 20576 | | > hide #!3 models |
| 20577 | | |
| 20578 | | > show #!8 models |
| 20579 | | |
| 20580 | | > fitmap #8 inMap #3 |
| 20581 | | |
| 20582 | | Fit molecule 231106_N55H_MBCD10_45.pdb (#8) to map |
| 20583 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 20584 | | average map value = 0.5177, steps = 40 |
| 20585 | | shifted from previous position = 0.00869 |
| 20586 | | rotated from previous position = 0.0108 degrees |
| 20587 | | atoms outside contour = 925, contour level = 0.12512 |
| 20588 | | |
| 20589 | | Position of 231106_N55H_MBCD10_45.pdb (#8) relative to |
| 20590 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 20591 | | Matrix rotation and translation |
| 20592 | | 0.99999999 -0.00006288 0.00012727 -0.01526767 |
| 20593 | | 0.00006286 0.99999999 0.00012447 -0.03196747 |
| 20594 | | -0.00012728 -0.00012446 0.99999998 0.03769369 |
| 20595 | | Axis -0.65926622 0.67414923 0.33300281 |
| 20596 | | Axis point 293.34893546 0.00000000 114.46091765 |
| 20597 | | Rotation angle (degrees) 0.01081693 |
| 20598 | | Shift along axis 0.00106672 |
| 20599 | | |
| 20600 | | |
| 20601 | | > fitmap #8 inMap #3 |
| 20602 | | |
| 20603 | | Fit molecule 231106_N55H_MBCD10_45.pdb (#8) to map |
| 20604 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 20605 | | average map value = 0.5177, steps = 24 |
| 20606 | | shifted from previous position = 0.00493 |
| 20607 | | rotated from previous position = 0.00603 degrees |
| 20608 | | atoms outside contour = 923, contour level = 0.12512 |
| 20609 | | |
| 20610 | | Position of 231106_N55H_MBCD10_45.pdb (#8) relative to |
| 20611 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 20612 | | Matrix rotation and translation |
| 20613 | | 1.00000000 -0.00008633 0.00004328 0.00391074 |
| 20614 | | 0.00008632 0.99999998 0.00018329 -0.04646977 |
| 20615 | | -0.00004329 -0.00018329 0.99999998 0.03435429 |
| 20616 | | Axis -0.88471097 0.20893837 0.41669083 |
| 20617 | | Axis point 0.00000000 184.80317413 254.85541308 |
| 20618 | | Rotation angle (degrees) 0.01187027 |
| 20619 | | Shift along axis 0.00114592 |
| 20620 | | |
| 20621 | | |
| 20622 | | > fitmap #8 inMap #3 |
| 20623 | | |
| 20624 | | Fit molecule 231106_N55H_MBCD10_45.pdb (#8) to map |
| 20625 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 20626 | | average map value = 0.5176, steps = 24 |
| 20627 | | shifted from previous position = 0.00631 |
| 20628 | | rotated from previous position = 0.0067 degrees |
| 20629 | | atoms outside contour = 925, contour level = 0.12512 |
| 20630 | | |
| 20631 | | Position of 231106_N55H_MBCD10_45.pdb (#8) relative to |
| 20632 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 20633 | | Matrix rotation and translation |
| 20634 | | 0.99999999 -0.00008564 -0.00007185 0.02659363 |
| 20635 | | 0.00008565 0.99999998 0.00016305 -0.04334834 |
| 20636 | | 0.00007184 -0.00016306 0.99999998 0.01612981 |
| 20637 | | Axis -0.82477402 -0.36341905 0.43321406 |
| 20638 | | Axis point 0.00000000 96.74892212 264.06480695 |
| 20639 | | Rotation angle (degrees) 0.01132724 |
| 20640 | | Shift along axis 0.00080754 |
| 20641 | | |
| 20642 | | |
| 20643 | | > fitmap #8 inMap #3 |
| 20644 | | |
| 20645 | | Fit molecule 231106_N55H_MBCD10_45.pdb (#8) to map |
| 20646 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 20647 | | average map value = 0.5176, steps = 24 |
| 20648 | | shifted from previous position = 0.00606 |
| 20649 | | rotated from previous position = 0.00578 degrees |
| 20650 | | atoms outside contour = 928, contour level = 0.12512 |
| 20651 | | |
| 20652 | | Position of 231106_N55H_MBCD10_45.pdb (#8) relative to |
| 20653 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 20654 | | Matrix rotation and translation |
| 20655 | | 0.99999999 -0.00008718 -0.00014443 0.04170876 |
| 20656 | | 0.00008719 0.99999999 0.00009290 -0.02948309 |
| 20657 | | 0.00014442 -0.00009291 0.99999999 -0.00316916 |
| 20658 | | Axis -0.48239008 -0.74990770 0.45270106 |
| 20659 | | Axis point 23.71335425 0.00000000 290.63541470 |
| 20660 | | Rotation angle (degrees) 0.01103461 |
| 20661 | | Shift along axis 0.00055502 |
| 20662 | | |
| 20663 | | |
| 20664 | | > fitmap #8 inMap #3 |
| 20665 | | |
| 20666 | | Fit molecule 231106_N55H_MBCD10_45.pdb (#8) to map |
| 20667 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 20668 | | average map value = 0.5176, steps = 24 |
| 20669 | | shifted from previous position = 0.0084 |
| 20670 | | rotated from previous position = 0.00796 degrees |
| 20671 | | atoms outside contour = 926, contour level = 0.12512 |
| 20672 | | |
| 20673 | | Position of 231106_N55H_MBCD10_45.pdb (#8) relative to |
| 20674 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 20675 | | Matrix rotation and translation |
| 20676 | | 0.99999998 -0.00009096 -0.00016115 0.04577422 |
| 20677 | | 0.00009095 0.99999999 -0.00004499 -0.00194818 |
| 20678 | | 0.00016116 0.00004498 0.99999999 -0.02433268 |
| 20679 | | Axis 0.23621831 -0.84622718 0.47759864 |
| 20680 | | Axis point 153.49974540 0.00000000 282.79119049 |
| 20681 | | Rotation angle (degrees) 0.01091150 |
| 20682 | | Shift along axis 0.00084005 |
| 20683 | | |
| 20684 | | |
| 20685 | | > fitmap #8 inMap #3 |
| 20686 | | |
| 20687 | | Fit molecule 231106_N55H_MBCD10_45.pdb (#8) to map |
| 20688 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 20689 | | average map value = 0.5176, steps = 24 |
| 20690 | | shifted from previous position = 0.00429 |
| 20691 | | rotated from previous position = 0.00396 degrees |
| 20692 | | atoms outside contour = 927, contour level = 0.12512 |
| 20693 | | |
| 20694 | | Position of 231106_N55H_MBCD10_45.pdb (#8) relative to |
| 20695 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 20696 | | Matrix rotation and translation |
| 20697 | | 0.99999999 -0.00008963 -0.00012710 0.03864581 |
| 20698 | | 0.00008962 0.99999999 -0.00010507 0.01058368 |
| 20699 | | 0.00012711 0.00010506 0.99999999 -0.02783017 |
| 20700 | | Axis 0.55979164 -0.67721272 0.47751047 |
| 20701 | | Axis point 223.40305062 0.00000000 298.85697430 |
| 20702 | | Rotation angle (degrees) 0.01075359 |
| 20703 | | Shift along axis 0.00117701 |
| 20704 | | |
| 20705 | | |
| 20706 | | > fitmap #8 inMap #3 |
| 20707 | | |
| 20708 | | Fit molecule 231106_N55H_MBCD10_45.pdb (#8) to map |
| 20709 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 20710 | | average map value = 0.5176, steps = 24 |
| 20711 | | shifted from previous position = 0.00495 |
| 20712 | | rotated from previous position = 0.00428 degrees |
| 20713 | | atoms outside contour = 922, contour level = 0.12512 |
| 20714 | | |
| 20715 | | Position of 231106_N55H_MBCD10_45.pdb (#8) relative to |
| 20716 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 20717 | | Matrix rotation and translation |
| 20718 | | 0.99999999 -0.00008758 -0.00007074 0.02645884 |
| 20719 | | 0.00008757 0.99999998 -0.00015411 0.02099520 |
| 20720 | | 0.00007075 0.00015410 0.99999999 -0.02685333 |
| 20721 | | Axis 0.80748568 -0.37070285 0.45885321 |
| 20722 | | Axis point 0.00000000 178.02059677 139.24871691 |
| 20723 | | Rotation angle (degrees) 0.01093479 |
| 20724 | | Shift along axis 0.00126042 |
| 20725 | | |
| 20726 | | |
| 20727 | | > hide #!2 models |
| 20728 | | |
| 20729 | | > show #!7 models |
| 20730 | | |
| 20731 | | > hide #!8 models |
| 20732 | | |
| 20733 | | > show #!8 models |
| 20734 | | |
| 20735 | | > hide #!8 models |
| 20736 | | |
| 20737 | | > show #!8 models |
| 20738 | | |
| 20739 | | > select clear |
| 20740 | | |
| 20741 | | > save "C:/Users/OJS/OneDrive - |
| 20742 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 20743 | | |
| 20744 | | > show #!2 models |
| 20745 | | |
| 20746 | | > hide #!2 models |
| 20747 | | |
| 20748 | | > ~clip |
| 20749 | | |
| 20750 | | > show #!4 models |
| 20751 | | |
| 20752 | | > volume #3 level 0.1061 |
| 20753 | | |
| 20754 | | > volume #4 level 0.05646 |
| 20755 | | |
| 20756 | | > view orient |
| 20757 | | |
| 20758 | | > turn x 90 |
| 20759 | | |
| 20760 | | [Repeated 2 time(s)] |
| 20761 | | |
| 20762 | | > clip front 0 |
| 20763 | | |
| 20764 | | > volume #4 level 0.08309 |
| 20765 | | |
| 20766 | | > volume #4 level 0.07468 |
| 20767 | | |
| 20768 | | > volume #4 level 0.06627 |
| 20769 | | |
| 20770 | | > hide #!8 models |
| 20771 | | |
| 20772 | | > hide #!7 models |
| 20773 | | |
| 20774 | | > hide #!4 models |
| 20775 | | |
| 20776 | | > show #!8 models |
| 20777 | | |
| 20778 | | > show #!3 models |
| 20779 | | |
| 20780 | | > hide #!3 models |
| 20781 | | |
| 20782 | | > show #!4 models |
| 20783 | | |
| 20784 | | > select #8/b |
| 20785 | | |
| 20786 | | 1953 atoms, 1996 bonds, 1 pseudobond, 206 residues, 2 models selected |
| 20787 | | |
| 20788 | | > select #8/d |
| 20789 | | |
| 20790 | | 1953 atoms, 1996 bonds, 1 pseudobond, 206 residues, 2 models selected |
| 20791 | | |
| 20792 | | > select #8/e |
| 20793 | | |
| 20794 | | 1953 atoms, 1996 bonds, 1 pseudobond, 206 residues, 2 models selected |
| 20795 | | |
| 20796 | | > select #8/e:33 |
| 20797 | | |
| 20798 | | 11 atoms, 10 bonds, 1 residue, 1 model selected |
| 20799 | | |
| 20800 | | > select #8/e:31 |
| 20801 | | |
| 20802 | | 8 atoms, 7 bonds, 1 residue, 1 model selected |
| 20803 | | |
| 20804 | | > select #8/e:30 |
| 20805 | | |
| 20806 | | 11 atoms, 11 bonds, 1 residue, 1 model selected |
| 20807 | | |
| 20808 | | > show sel atoms |
| 20809 | | |
| 20810 | | > style sel stick |
| 20811 | | |
| 20812 | | Changed 11 atom styles |
| 20813 | | |
| 20814 | | > hide sel atoms |
| 20815 | | |
| 20816 | | > volume #4 level 0.04665 |
| 20817 | | |
| 20818 | | > hide #!8 models |
| 20819 | | |
| 20820 | | > volume #4 level 0.06417 |
| 20821 | | |
| 20822 | | > select clear |
| 20823 | | |
| 20824 | | > open |
| 20825 | | > C:/Users/OJS/Desktop/Phenix/230901_MBCD_Chol_N55H/RealSpaceRefine_46/231107_From43_real_space_refined_046.pdb |
| 20826 | | |
| 20827 | | Chain information for 231107_From43_real_space_refined_046.pdb #6 |
| 20828 | | --- |
| 20829 | | Chain | Description |
| 20830 | | A B C D E F | No description available |
| 20831 | | |
| 20832 | | |
| 20833 | | > select add #6 |
| 20834 | | |
| 20835 | | 10164 atoms, 10428 bonds, 6 pseudobonds, 1206 residues, 2 models selected |
| 20836 | | |
| 20837 | | > view matrix models #6,1,0,0,8.2564,0,1,0,-35.975,0,0,1,-0.34924 |
| 20838 | | |
| 20839 | | > view matrix models #6,1,0,0,-17.359,0,1,0,-37.252,0,0,1,-40.744 |
| 20840 | | |
| 20841 | | > view matrix models #6,1,0,0,-30.083,0,1,0,-37.062,0,0,1,-38.68 |
| 20842 | | |
| 20843 | | > fitmap #6 inMap #4 |
| 20844 | | |
| 20845 | | Fit molecule 231107_From43_real_space_refined_046.pdb (#6) to map |
| 20846 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) using 10164 atoms |
| 20847 | | average map value = 0.07039, steps = 112 |
| 20848 | | shifted from previous position = 5.12 |
| 20849 | | rotated from previous position = 13.8 degrees |
| 20850 | | atoms outside contour = 5249, contour level = 0.064171 |
| 20851 | | |
| 20852 | | Position of 231107_From43_real_space_refined_046.pdb (#6) relative to |
| 20853 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) coordinates: |
| 20854 | | Matrix rotation and translation |
| 20855 | | 0.53125879 0.84720919 -0.00083081 -64.02973600 |
| 20856 | | -0.84720944 0.53125903 0.00008376 223.21308758 |
| 20857 | | 0.00051234 0.00065937 0.99999965 -5.07318578 |
| 20858 | | Axis 0.00033971 -0.00079269 -0.99999963 |
| 20859 | | Axis point 169.70709224 169.47420038 0.00000000 |
| 20860 | | Rotation angle (degrees) 57.90945793 |
| 20861 | | Shift along axis 4.87449420 |
| 20862 | | |
| 20863 | | |
| 20864 | | > hide sel atoms |
| 20865 | | |
| 20866 | | > show sel cartoons |
| 20867 | | |
| 20868 | | > ui mousemode right "translate selected models" |
| 20869 | | |
| 20870 | | > view matrix models |
| 20871 | | > #6,0.97095,0.23926,-0.00067254,-69.824,-0.23926,0.97095,-0.00051009,10.463,0.00053096,0.00065619,1,-28.165 |
| 20872 | | |
| 20873 | | > fitmap #6 inMap #4 |
| 20874 | | |
| 20875 | | Fit molecule 231107_From43_real_space_refined_046.pdb (#6) to map |
| 20876 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) using 10164 atoms |
| 20877 | | average map value = 0.1139, steps = 64 |
| 20878 | | shifted from previous position = 4.96 |
| 20879 | | rotated from previous position = 2.09 degrees |
| 20880 | | atoms outside contour = 1724, contour level = 0.064171 |
| 20881 | | |
| 20882 | | Position of 231107_From43_real_space_refined_046.pdb (#6) relative to |
| 20883 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) coordinates: |
| 20884 | | Matrix rotation and translation |
| 20885 | | 0.49996032 0.86604831 -0.00004680 -62.05792169 |
| 20886 | | -0.86604796 0.49996006 -0.00093131 231.88463004 |
| 20887 | | -0.00078316 0.00050615 0.99999957 0.00753382 |
| 20888 | | Axis 0.00082989 0.00042513 -0.99999957 |
| 20889 | | Axis point 169.77837853 169.68323700 0.00000000 |
| 20890 | | Rotation angle (degrees) 60.00264811 |
| 20891 | | Shift along axis 0.03954545 |
| 20892 | | |
| 20893 | | |
| 20894 | | > select clear |
| 20895 | | |
| 20896 | | > select ::name="6OU"::name="CLR"::name="MC3"::name="PTY"::name="Y01" |
| 20897 | | |
| 20898 | | 8154 atoms, 8112 bonds, 186 residues, 4 models selected |
| 20899 | | |
| 20900 | | > show sel atoms |
| 20901 | | |
| 20902 | | > color sel byhetero |
| 20903 | | |
| 20904 | | > select clear |
| 20905 | | |
| 20906 | | > close #6 |
| 20907 | | |
| 20908 | | > open "C:/Users/OJS/OneDrive - |
| 20909 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231107_N55H_MBCD100_46.pdb" |
| 20910 | | |
| 20911 | | Chain information for 231107_N55H_MBCD100_46.pdb #6 |
| 20912 | | --- |
| 20913 | | Chain | Description |
| 20914 | | A B C D E F | No description available |
| 20915 | | |
| 20916 | | |
| 20917 | | > rename #6 id #9 |
| 20918 | | |
| 20919 | | > color #9 cyan |
| 20920 | | |
| 20921 | | > color #9 #aaffffff |
| 20922 | | |
| 20923 | | > select add #9 |
| 20924 | | |
| 20925 | | 10164 atoms, 10428 bonds, 6 pseudobonds, 1206 residues, 2 models selected |
| 20926 | | |
| 20927 | | > view matrix models #9,1,0,0,-35.89,0,1,0,2.2782,0,0,1,-30.318 |
| 20928 | | |
| 20929 | | > view matrix models #9,1,0,0,-35.48,0,1,0,-24.726,0,0,1,-28.732 |
| 20930 | | |
| 20931 | | > hide sel atoms |
| 20932 | | |
| 20933 | | > show sel cartoons |
| 20934 | | |
| 20935 | | > select clear |
| 20936 | | |
| 20937 | | > hide #!4 models |
| 20938 | | |
| 20939 | | > show #!8 models |
| 20940 | | |
| 20941 | | > fitmap #9 inMap #4 |
| 20942 | | |
| 20943 | | Fit molecule 231107_N55H_MBCD100_46.pdb (#9) to map |
| 20944 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) using 10164 atoms |
| 20945 | | average map value = 0.1139, steps = 128 |
| 20946 | | shifted from previous position = 10.1 |
| 20947 | | rotated from previous position = 15.9 degrees |
| 20948 | | atoms outside contour = 1730, contour level = 0.064171 |
| 20949 | | |
| 20950 | | Position of 231107_N55H_MBCD100_46.pdb (#9) relative to |
| 20951 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) coordinates: |
| 20952 | | Matrix rotation and translation |
| 20953 | | 0.50002530 0.86601078 -0.00017841 -62.03875912 |
| 20954 | | -0.86601064 0.50002508 -0.00070034 231.82881648 |
| 20955 | | -0.00051730 0.00050469 0.99999974 -0.02049358 |
| 20956 | | Axis 0.00069574 0.00019566 -0.99999974 |
| 20957 | | Axis point 169.75701519 169.64337069 0.00000000 |
| 20958 | | Rotation angle (degrees) 59.99834196 |
| 20959 | | Shift along axis 0.02269054 |
| 20960 | | |
| 20961 | | |
| 20962 | | > select ::name="6OU" |
| 20963 | | |
| 20964 | | 2058 atoms, 2016 bonds, 42 residues, 2 models selected |
| 20965 | | |
| 20966 | | > color sel gray |
| 20967 | | |
| 20968 | | > select ::name="MC3" |
| 20969 | | |
| 20970 | | 2784 atoms, 2712 bonds, 72 residues, 2 models selected |
| 20971 | | |
| 20972 | | > color sel dark gray |
| 20973 | | |
| 20974 | | > color sel gray |
| 20975 | | |
| 20976 | | > select ::name="6OU" |
| 20977 | | |
| 20978 | | 2058 atoms, 2016 bonds, 42 residues, 2 models selected |
| 20979 | | |
| 20980 | | > color sel dark gray |
| 20981 | | |
| 20982 | | > select ::name="PTY" |
| 20983 | | |
| 20984 | | 1632 atoms, 1596 bonds, 36 residues, 3 models selected |
| 20985 | | |
| 20986 | | > color sel dark gray |
| 20987 | | |
| 20988 | | > select ::name="CLR" |
| 20989 | | |
| 20990 | | 672 atoms, 744 bonds, 24 residues, 2 models selected |
| 20991 | | |
| 20992 | | > color sel yellow |
| 20993 | | |
| 20994 | | > select |
| 20995 | | |
| 20996 | | 56532 atoms, 57612 bonds, 24 pseudobonds, 4914 residues, 18 models selected |
| 20997 | | |
| 20998 | | > color sel byhetero |
| 20999 | | |
| 21000 | | > ribbon style thickness 0.6 |
| 21001 | | |
| 21002 | | > select clear |
| 21003 | | |
| 21004 | | > show #!7 models |
| 21005 | | |
| 21006 | | > select add #7 |
| 21007 | | |
| 21008 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 21009 | | |
| 21010 | | > select add #8 |
| 21011 | | |
| 21012 | | 22230 atoms, 22812 bonds, 12 pseudobonds, 2424 residues, 4 models selected |
| 21013 | | |
| 21014 | | > hide #!8 models |
| 21015 | | |
| 21016 | | > hide #!7 models |
| 21017 | | |
| 21018 | | > hide #!9 models |
| 21019 | | |
| 21020 | | > select add #9 |
| 21021 | | |
| 21022 | | 32394 atoms, 33240 bonds, 18 pseudobonds, 3630 residues, 6 models selected |
| 21023 | | |
| 21024 | | > ui tool show "Selection Inspector" |
| 21025 | | |
| 21026 | | > setattr =sel p display false |
| 21027 | | |
| 21028 | | Assigning display attribute to 18 items |
| 21029 | | |
| 21030 | | > size =sel stickRadius 0.3 |
| 21031 | | |
| 21032 | | Changed 33240 bond radii |
| 21033 | | |
| 21034 | | > show #!8 models |
| 21035 | | |
| 21036 | | > select subtract #8 |
| 21037 | | |
| 21038 | | 20676 atoms, 21264 bonds, 12 pseudobonds, 2394 residues, 4 models selected |
| 21039 | | |
| 21040 | | > show #!7 models |
| 21041 | | |
| 21042 | | > select subtract #9 |
| 21043 | | |
| 21044 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 21045 | | |
| 21046 | | > hide #!8 models |
| 21047 | | |
| 21048 | | > select clear |
| 21049 | | |
| 21050 | | > ~clip |
| 21051 | | |
| 21052 | | > select clear |
| 21053 | | |
| 21054 | | > show #!9 models |
| 21055 | | |
| 21056 | | > hide #!9 models |
| 21057 | | |
| 21058 | | > select #7: 74-103 |
| 21059 | | |
| 21060 | | 1578 atoms, 1632 bonds, 180 residues, 1 model selected |
| 21061 | | |
| 21062 | | > ui tool show "Selection Inspector" |
| 21063 | | |
| 21064 | | > setattr sel r ss_type 1 |
| 21065 | | |
| 21066 | | Assigning ss_type attribute to 180 items |
| 21067 | | |
| 21068 | | > select clear |
| 21069 | | |
| 21070 | | > hide #!7 models |
| 21071 | | |
| 21072 | | > show #!8 models |
| 21073 | | |
| 21074 | | > hide #!8 models |
| 21075 | | |
| 21076 | | > show #!9 models |
| 21077 | | |
| 21078 | | > hide #!9 models |
| 21079 | | |
| 21080 | | > show #!9 models |
| 21081 | | |
| 21082 | | > select ::name="6OU"::name="CLR"::name="MC3"::name="PTY"::name="Y01" |
| 21083 | | |
| 21084 | | 8154 atoms, 8112 bonds, 186 residues, 4 models selected |
| 21085 | | |
| 21086 | | > show sel atoms |
| 21087 | | |
| 21088 | | > select clear |
| 21089 | | |
| 21090 | | > save "C:/Users/OJS/OneDrive - |
| 21091 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 21092 | | |
| 21093 | | > morph #7,8,9 |
| 21094 | | |
| 21095 | | Computed 101 frame morph #6 |
| 21096 | | |
| 21097 | | > coordset #6 1,101 |
| 21098 | | |
| 21099 | | > close #6 |
| 21100 | | |
| 21101 | | > show #!9 models |
| 21102 | | |
| 21103 | | > show #!8 models |
| 21104 | | |
| 21105 | | > hide #!9 models |
| 21106 | | |
| 21107 | | > save "C:/Users/OJS/OneDrive - |
| 21108 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 21109 | | |
| 21110 | | ——— End of log from Tue Nov 7 22:27:07 2023 ——— |
| 21111 | | |
| 21112 | | opened ChimeraX session |
| 21113 | | |
| 21114 | | > show #!1 models |
| 21115 | | |
| 21116 | | > hide #!8 models |
| 21117 | | |
| 21118 | | > open |
| 21119 | | > C:/Users/OJS/Desktop/Phenix/230320_Cx43_WT_POPE_PIP2/RealSpaceRefine_107/231109_From104_real_space_refined_107.pdb |
| 21120 | | |
| 21121 | | Chain information for 231109_From104_real_space_refined_107.pdb #6 |
| 21122 | | --- |
| 21123 | | Chain | Description |
| 21124 | | A B C D E F | No description available |
| 21125 | | |
| 21126 | | |
| 21127 | | > ui mousemode right "rotate selected models" |
| 21128 | | |
| 21129 | | > select add #1 |
| 21130 | | |
| 21131 | | 2 models selected |
| 21132 | | |
| 21133 | | > select subtract #1 |
| 21134 | | |
| 21135 | | Nothing selected |
| 21136 | | |
| 21137 | | > select add #6 |
| 21138 | | |
| 21139 | | 11532 atoms, 11736 bonds, 6 pseudobonds, 1260 residues, 2 models selected |
| 21140 | | |
| 21141 | | > view matrix models |
| 21142 | | > #6,0.13237,-0.68327,0.71806,140.72,0.26252,0.72273,0.63933,-106.4,-0.9558,0.10388,0.27504,267.98 |
| 21143 | | |
| 21144 | | > view matrix models |
| 21145 | | > #6,0.77882,-0.080654,0.62205,-54.769,-0.25429,-0.94715,0.19557,340.05,0.5734,-0.31049,-0.75816,254.9 |
| 21146 | | |
| 21147 | | > view matrix models |
| 21148 | | > #6,0.74151,-0.66956,-0.042972,164.72,-0.64662,-0.69608,-0.31202,450.47,0.17901,0.25916,-0.9491,257.7 |
| 21149 | | |
| 21150 | | > ui mousemode right "translate selected models" |
| 21151 | | |
| 21152 | | > view matrix models |
| 21153 | | > #6,0.74151,-0.66956,-0.042972,122.47,-0.64662,-0.69608,-0.31202,442.06,0.17901,0.25916,-0.9491,261.11 |
| 21154 | | |
| 21155 | | > view matrix models |
| 21156 | | > #6,0.74151,-0.66956,-0.042972,123.55,-0.64662,-0.69608,-0.31202,417.94,0.17901,0.25916,-0.9491,254.71 |
| 21157 | | |
| 21158 | | > view matrix models |
| 21159 | | > #6,0.74151,-0.66956,-0.042972,132.96,-0.64662,-0.69608,-0.31202,415.62,0.17901,0.25916,-0.9491,223.09 |
| 21160 | | |
| 21161 | | > view matrix models |
| 21162 | | > #6,0.74151,-0.66956,-0.042972,132.51,-0.64662,-0.69608,-0.31202,407.23,0.17901,0.25916,-0.9491,230.03 |
| 21163 | | |
| 21164 | | > hide sel atoms |
| 21165 | | |
| 21166 | | > show sel cartoons |
| 21167 | | |
| 21168 | | > ui tool show "Fit in Map" |
| 21169 | | |
| 21170 | | > fitmap #6 inMap #1 |
| 21171 | | |
| 21172 | | Fit molecule 231109_From104_real_space_refined_107.pdb (#6) to map |
| 21173 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11532 atoms |
| 21174 | | average map value = 0.07971, steps = 188 |
| 21175 | | shifted from previous position = 2.87 |
| 21176 | | rotated from previous position = 8.36 degrees |
| 21177 | | atoms outside contour = 8809, contour level = 0.15164 |
| 21178 | | |
| 21179 | | Position of 231109_From104_real_space_refined_107.pdb (#6) relative to |
| 21180 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 21181 | | Matrix rotation and translation |
| 21182 | | -0.71748529 0.69480870 -0.04955538 181.17614317 |
| 21183 | | -0.67278798 -0.70966171 -0.20913295 432.88561805 |
| 21184 | | -0.18047496 -0.11670955 0.97663078 55.00374919 |
| 21185 | | Axis 0.06712163 0.09507911 -0.99320423 |
| 21186 | | Axis point 179.43580819 182.66068980 0.00000000 |
| 21187 | | Rotation angle (degrees) 136.49032364 |
| 21188 | | Shift along axis -1.31074062 |
| 21189 | | |
| 21190 | | |
| 21191 | | > view matrix models |
| 21192 | | > #6,0.71432,-0.69811,0.048812,122.56,-0.67608,-0.70643,-0.20946,399.92,0.18071,0.11662,-0.9766,258.75 |
| 21193 | | |
| 21194 | | > ui mousemode right "rotate selected models" |
| 21195 | | |
| 21196 | | > view matrix models |
| 21197 | | > #6,0.61384,-0.78772,0.051964,154.26,-0.76535,-0.60996,-0.20541,398,0.1935,0.086317,-0.9773,261.84 |
| 21198 | | |
| 21199 | | > view matrix models |
| 21200 | | > #6,0.61891,-0.78013,0.091404,145.31,-0.77448,-0.6255,-0.094467,383.05,0.13087,-0.012324,-0.99132,291.61 |
| 21201 | | |
| 21202 | | > view matrix models |
| 21203 | | > #6,0.60681,-0.79445,0.025187,161.21,-0.76988,-0.59533,-0.22992,400.51,0.19766,0.12013,-0.97288,254.64 |
| 21204 | | |
| 21205 | | > view matrix models |
| 21206 | | > #6,0.62666,-0.77592,0.072482,146.54,-0.75147,-0.6263,-0.20748,398.77,0.20638,0.075548,-0.97555,261.18 |
| 21207 | | |
| 21208 | | > fitmap #6 inMap #1 |
| 21209 | | |
| 21210 | | Fit molecule 231109_From104_real_space_refined_107.pdb (#6) to map |
| 21211 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11532 atoms |
| 21212 | | average map value = 0.3568, steps = 176 |
| 21213 | | shifted from previous position = 6.43 |
| 21214 | | rotated from previous position = 15.9 degrees |
| 21215 | | atoms outside contour = 1929, contour level = 0.15164 |
| 21216 | | |
| 21217 | | Position of 231109_From104_real_space_refined_107.pdb (#6) relative to |
| 21218 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 21219 | | Matrix rotation and translation |
| 21220 | | -0.50028589 0.86586026 0.00020476 107.56608506 |
| 21221 | | -0.86586028 -0.50028590 -0.00001700 401.30148644 |
| 21222 | | 0.00008772 -0.00018580 0.99999998 0.01309877 |
| 21223 | | Axis -0.00009748 0.00006758 -0.99999999 |
| 21224 | | Axis point 169.58464230 169.61092630 0.00000000 |
| 21225 | | Rotation angle (degrees) 120.01891703 |
| 21226 | | Shift along axis 0.00353785 |
| 21227 | | |
| 21228 | | |
| 21229 | | > fitmap #6 inMap #1 |
| 21230 | | |
| 21231 | | Fit molecule 231109_From104_real_space_refined_107.pdb (#6) to map |
| 21232 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11532 atoms |
| 21233 | | average map value = 0.3568, steps = 24 |
| 21234 | | shifted from previous position = 0.00614 |
| 21235 | | rotated from previous position = 0.00953 degrees |
| 21236 | | atoms outside contour = 1932, contour level = 0.15164 |
| 21237 | | |
| 21238 | | Position of 231109_From104_real_space_refined_107.pdb (#6) relative to |
| 21239 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 21240 | | Matrix rotation and translation |
| 21241 | | -0.50020698 0.86590587 0.00011095 107.56389557 |
| 21242 | | -0.86590588 -0.50020696 -0.00011983 401.30796047 |
| 21243 | | -0.00004827 -0.00015602 0.99999999 0.03112354 |
| 21244 | | Axis -0.00002089 0.00009194 -1.00000000 |
| 21245 | | Axis point 169.59760743 169.61152849 0.00000000 |
| 21246 | | Rotation angle (degrees) 120.01369424 |
| 21247 | | Shift along axis 0.00352389 |
| 21248 | | |
| 21249 | | |
| 21250 | | > fitmap #6 inMap #1 |
| 21251 | | |
| 21252 | | Fit molecule 231109_From104_real_space_refined_107.pdb (#6) to map |
| 21253 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11532 atoms |
| 21254 | | average map value = 0.3568, steps = 24 |
| 21255 | | shifted from previous position = 0.000462 |
| 21256 | | rotated from previous position = 0.00141 degrees |
| 21257 | | atoms outside contour = 1931, contour level = 0.15164 |
| 21258 | | |
| 21259 | | Position of 231109_From104_real_space_refined_107.pdb (#6) relative to |
| 21260 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 21261 | | Matrix rotation and translation |
| 21262 | | -0.50018665 0.86591761 0.00011759 107.55777922 |
| 21263 | | -0.86591762 -0.50018663 -0.00011681 401.30600788 |
| 21264 | | -0.00004233 -0.00016025 0.99999999 0.03075263 |
| 21265 | | Axis -0.00002509 0.00009234 -1.00000000 |
| 21266 | | Axis point 169.59712637 169.61147556 0.00000000 |
| 21267 | | Rotation angle (degrees) 120.01234886 |
| 21268 | | Shift along axis 0.00360584 |
| 21269 | | |
| 21270 | | |
| 21271 | | > select clear |
| 21272 | | |
| 21273 | | > color #6 #ff5500ff |
| 21274 | | |
| 21275 | | > color #6 #ff557fff |
| 21276 | | |
| 21277 | | > mlp #!6 |
| 21278 | | |
| 21279 | | Map values for surface "231109_From104_real_space_refined_107.pdb_A SES |
| 21280 | | surface": minimum -26.99, mean 0.04315, maximum 26.26 |
| 21281 | | Map values for surface "231109_From104_real_space_refined_107.pdb_B SES |
| 21282 | | surface": minimum -27.29, mean 0.03899, maximum 25.53 |
| 21283 | | Map values for surface "231109_From104_real_space_refined_107.pdb_C SES |
| 21284 | | surface": minimum -26.49, mean 0.01245, maximum 23.7 |
| 21285 | | Map values for surface "231109_From104_real_space_refined_107.pdb_D SES |
| 21286 | | surface": minimum -26.66, mean 0.07194, maximum 26.22 |
| 21287 | | Map values for surface "231109_From104_real_space_refined_107.pdb_E SES |
| 21288 | | surface": minimum -28.05, mean -0.02388, maximum 25.33 |
| 21289 | | Map values for surface "231109_From104_real_space_refined_107.pdb_F SES |
| 21290 | | surface": minimum -26.49, mean 0.05334, maximum 23.73 |
| 21291 | | To also show corresponding color key, enter the above mlp command and add key |
| 21292 | | true |
| 21293 | | |
| 21294 | | > select |
| 21295 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 21296 | | |
| 21297 | | 10068 atoms, 9954 bonds, 264 residues, 5 models selected |
| 21298 | | |
| 21299 | | > show sel atoms |
| 21300 | | |
| 21301 | | > color sel byhetero |
| 21302 | | |
| 21303 | | > select clear |
| 21304 | | |
| 21305 | | > select ::name="6OU" |
| 21306 | | |
| 21307 | | 2646 atoms, 2592 bonds, 54 residues, 3 models selected |
| 21308 | | |
| 21309 | | > color sel gray |
| 21310 | | |
| 21311 | | > color sel byhetero |
| 21312 | | |
| 21313 | | > select clear |
| 21314 | | |
| 21315 | | > hide #!1 models |
| 21316 | | |
| 21317 | | > open |
| 21318 | | > C:/Users/OJS/Desktop/Phenix/230320_Cx43_WT_POPE_PIP2/RealSpaceRefine_108/231109_From104_plus6OU_real_space_refined_108.pdb |
| 21319 | | |
| 21320 | | Chain information for 231109_From104_plus6OU_real_space_refined_108.pdb #10 |
| 21321 | | --- |
| 21322 | | Chain | Description |
| 21323 | | A B C D E F | No description available |
| 21324 | | |
| 21325 | | |
| 21326 | | > select add #10 |
| 21327 | | |
| 21328 | | 11658 atoms, 11868 bonds, 6 pseudobonds, 1254 residues, 2 models selected |
| 21329 | | |
| 21330 | | > hide sel atoms |
| 21331 | | |
| 21332 | | > show sel cartoons |
| 21333 | | |
| 21334 | | > color #10 springgreen |
| 21335 | | |
| 21336 | | > hide #!6 models |
| 21337 | | |
| 21338 | | > show #!1 models |
| 21339 | | |
| 21340 | | > ui mousemode right "rotate selected models" |
| 21341 | | |
| 21342 | | > view matrix models |
| 21343 | | > #10,-0.4459,-0.86958,-0.21212,429.28,-0.87295,0.37012,0.31775,200.1,-0.1978,0.32686,-0.92414,309.86 |
| 21344 | | |
| 21345 | | > ui mousemode right "translate selected models" |
| 21346 | | |
| 21347 | | > view matrix models |
| 21348 | | > #10,-0.4459,-0.86958,-0.21212,387.11,-0.87295,0.37012,0.31775,180.43,-0.1978,0.32686,-0.92414,279.45 |
| 21349 | | |
| 21350 | | > view matrix models |
| 21351 | | > #10,-0.4459,-0.86958,-0.21212,390.28,-0.87295,0.37012,0.31775,173.95,-0.1978,0.32686,-0.92414,282.7 |
| 21352 | | |
| 21353 | | > ui tool show "Fit in Map" |
| 21354 | | |
| 21355 | | > fitmap #10 inMap #1 |
| 21356 | | |
| 21357 | | Fit molecule 231109_From104_plus6OU_real_space_refined_108.pdb (#10) to map |
| 21358 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 21359 | | average map value = 0.07802, steps = 96 |
| 21360 | | shifted from previous position = 2.75 |
| 21361 | | rotated from previous position = 4.34 degrees |
| 21362 | | atoms outside contour = 9059, contour level = 0.15164 |
| 21363 | | |
| 21364 | | Position of 231109_From104_plus6OU_real_space_refined_108.pdb (#10) relative |
| 21365 | | to WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 21366 | | Matrix rotation and translation |
| 21367 | | 0.38069495 0.90299489 0.19917720 -78.95055282 |
| 21368 | | -0.90547157 0.32032996 0.27840604 227.36619818 |
| 21369 | | 0.18759681 -0.28633707 0.93958421 26.01609916 |
| 21370 | | Axis -0.29807580 0.00611222 -0.95452263 |
| 21371 | | Axis point 122.45512037 171.38612659 0.00000000 |
| 21372 | | Rotation angle (degrees) 71.31865537 |
| 21373 | | Shift along axis 0.09000606 |
| 21374 | | |
| 21375 | | |
| 21376 | | > view matrix models |
| 21377 | | > #10,-0.38484,-0.90157,-0.19767,383.78,-0.90372,0.32453,0.27923,190.14,-0.18759,0.2861,-0.93966,291.92 |
| 21378 | | |
| 21379 | | > fitmap #10 inMap #1 |
| 21380 | | |
| 21381 | | Fit molecule 231109_From104_plus6OU_real_space_refined_108.pdb (#10) to map |
| 21382 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 21383 | | average map value = 0.3546, steps = 252 |
| 21384 | | shifted from previous position = 6.91 |
| 21385 | | rotated from previous position = 21.8 degrees |
| 21386 | | atoms outside contour = 2009, contour level = 0.15164 |
| 21387 | | |
| 21388 | | Position of 231109_From104_plus6OU_real_space_refined_108.pdb (#10) relative |
| 21389 | | to WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 21390 | | Matrix rotation and translation |
| 21391 | | 0.49970300 0.86619679 0.00003886 -62.05998605 |
| 21392 | | -0.86619679 0.49970300 0.00000325 231.75675355 |
| 21393 | | -0.00001660 -0.00003529 0.99999999 0.00551060 |
| 21394 | | Axis -0.00002225 0.00003202 -1.00000000 |
| 21395 | | Axis point 169.59779534 169.60262675 0.00000000 |
| 21396 | | Rotation angle (degrees) 60.01964719 |
| 21397 | | Shift along axis 0.00329037 |
| 21398 | | |
| 21399 | | |
| 21400 | | > fitmap #10 inMap #1 |
| 21401 | | |
| 21402 | | Fit molecule 231109_From104_plus6OU_real_space_refined_108.pdb (#10) to map |
| 21403 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 21404 | | average map value = 0.3546, steps = 24 |
| 21405 | | shifted from previous position = 0.00432 |
| 21406 | | rotated from previous position = 0.00495 degrees |
| 21407 | | atoms outside contour = 2016, contour level = 0.15164 |
| 21408 | | |
| 21409 | | Position of 231109_From104_plus6OU_real_space_refined_108.pdb (#10) relative |
| 21410 | | to WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 21411 | | Matrix rotation and translation |
| 21412 | | 0.49977604 0.86615465 0.00004490 -62.06237052 |
| 21413 | | -0.86615465 0.49977604 -0.00001452 231.73836261 |
| 21414 | | -0.00003501 -0.00003164 0.99999999 0.00804593 |
| 21415 | | Axis -0.00000988 0.00004613 -1.00000000 |
| 21416 | | Axis point 169.60021437 169.60072652 0.00000000 |
| 21417 | | Rotation angle (degrees) 60.01481554 |
| 21418 | | Shift along axis 0.00325777 |
| 21419 | | |
| 21420 | | |
| 21421 | | > fitmap #10 inMap #1 |
| 21422 | | |
| 21423 | | Fit molecule 231109_From104_plus6OU_real_space_refined_108.pdb (#10) to map |
| 21424 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 21425 | | average map value = 0.3546, steps = 24 |
| 21426 | | shifted from previous position = 0.000227 |
| 21427 | | rotated from previous position = 0.00209 degrees |
| 21428 | | atoms outside contour = 2018, contour level = 0.15164 |
| 21429 | | |
| 21430 | | Position of 231109_From104_plus6OU_real_space_refined_108.pdb (#10) relative |
| 21431 | | to WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 21432 | | Matrix rotation and translation |
| 21433 | | 0.49979520 0.86614359 0.00007336 -62.06845979 |
| 21434 | | -0.86614359 0.49979520 -0.00002054 231.73443048 |
| 21435 | | -0.00005446 -0.00005328 0.99999998 0.01494287 |
| 21436 | | Axis -0.00001890 0.00007379 -1.00000000 |
| 21437 | | Axis point 169.59888920 169.60540510 0.00000000 |
| 21438 | | Rotation angle (degrees) 60.01354820 |
| 21439 | | Shift along axis 0.00332953 |
| 21440 | | |
| 21441 | | |
| 21442 | | > select clear |
| 21443 | | |
| 21444 | | > hide #!1 models |
| 21445 | | |
| 21446 | | > show #!1 models |
| 21447 | | |
| 21448 | | > hide #!1 models |
| 21449 | | |
| 21450 | | > select |
| 21451 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 21452 | | |
| 21453 | | 12108 atoms, 11928 bonds, 336 residues, 6 models selected |
| 21454 | | |
| 21455 | | > show sel atoms |
| 21456 | | |
| 21457 | | > select ::name="6OU" |
| 21458 | | |
| 21459 | | 3528 atoms, 3456 bonds, 72 residues, 4 models selected |
| 21460 | | |
| 21461 | | > color sel gray |
| 21462 | | |
| 21463 | | > color sel byhetero |
| 21464 | | |
| 21465 | | > select clear |
| 21466 | | |
| 21467 | | > select add #10 |
| 21468 | | |
| 21469 | | 11658 atoms, 11868 bonds, 6 pseudobonds, 1254 residues, 2 models selected |
| 21470 | | |
| 21471 | | > ui tool show "Selection Inspector" |
| 21472 | | |
| 21473 | | > setattr =sel p display false |
| 21474 | | |
| 21475 | | Assigning display attribute to 6 items |
| 21476 | | |
| 21477 | | > size =sel stickRadius 0.3 |
| 21478 | | |
| 21479 | | Changed 11868 bond radii |
| 21480 | | |
| 21481 | | > show #!1 models |
| 21482 | | |
| 21483 | | > mlp sel |
| 21484 | | |
| 21485 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_A |
| 21486 | | SES surface": minimum -27.13, mean 0.04459, maximum 26.25 |
| 21487 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_B |
| 21488 | | SES surface": minimum -27.26, mean 0.01529, maximum 25.51 |
| 21489 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_C |
| 21490 | | SES surface": minimum -26.61, mean 0.0247, maximum 23.59 |
| 21491 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_D |
| 21492 | | SES surface": minimum -26.58, mean 0.06535, maximum 26.34 |
| 21493 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_E |
| 21494 | | SES surface": minimum -26.27, mean 0.001931, maximum 25.13 |
| 21495 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_F |
| 21496 | | SES surface": minimum -26.63, mean 0.08962, maximum 23.51 |
| 21497 | | To also show corresponding color key, enter the above mlp command and add key |
| 21498 | | true |
| 21499 | | |
| 21500 | | > select clear |
| 21501 | | |
| 21502 | | > select |
| 21503 | | |
| 21504 | | 79722 atoms, 81216 bonds, 36 pseudobonds, 7428 residues, 22 models selected |
| 21505 | | |
| 21506 | | > hide sel surfaces |
| 21507 | | |
| 21508 | | > select clear |
| 21509 | | |
| 21510 | | > mlp #!10 |
| 21511 | | |
| 21512 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_A |
| 21513 | | SES surface": minimum -27.13, mean 0.04459, maximum 26.25 |
| 21514 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_B |
| 21515 | | SES surface": minimum -27.26, mean 0.01529, maximum 25.51 |
| 21516 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_C |
| 21517 | | SES surface": minimum -26.61, mean 0.0247, maximum 23.59 |
| 21518 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_D |
| 21519 | | SES surface": minimum -26.58, mean 0.06535, maximum 26.34 |
| 21520 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_E |
| 21521 | | SES surface": minimum -26.27, mean 0.001931, maximum 25.13 |
| 21522 | | Map values for surface "231109_From104_plus6OU_real_space_refined_108.pdb_F |
| 21523 | | SES surface": minimum -26.63, mean 0.08962, maximum 23.51 |
| 21524 | | To also show corresponding color key, enter the above mlp command and add key |
| 21525 | | true |
| 21526 | | |
| 21527 | | > volume #1 level 0.198 |
| 21528 | | |
| 21529 | | > volume #1 level 0.164 |
| 21530 | | |
| 21531 | | > surface dust #1 size 8.48 |
| 21532 | | |
| 21533 | | > show #!6 models |
| 21534 | | |
| 21535 | | > select add #6 |
| 21536 | | |
| 21537 | | 11532 atoms, 11736 bonds, 6 pseudobonds, 1260 residues, 2 models selected |
| 21538 | | |
| 21539 | | > select add #10 |
| 21540 | | |
| 21541 | | 23190 atoms, 23604 bonds, 12 pseudobonds, 2514 residues, 10 models selected |
| 21542 | | |
| 21543 | | > close #6 |
| 21544 | | |
| 21545 | | > close #10 |
| 21546 | | |
| 21547 | | > hide #!1 models |
| 21548 | | |
| 21549 | | > show #!8 models |
| 21550 | | |
| 21551 | | > save "C:/Users/OJS/OneDrive - |
| 21552 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 21553 | | |
| 21554 | | > show #!9 models |
| 21555 | | |
| 21556 | | > hide #!9 models |
| 21557 | | |
| 21558 | | > show #!7 models |
| 21559 | | |
| 21560 | | > hide #!7 models |
| 21561 | | |
| 21562 | | > show #!7 models |
| 21563 | | |
| 21564 | | > hide #!7 models |
| 21565 | | |
| 21566 | | > show #!7 models |
| 21567 | | |
| 21568 | | > hide #!7 models |
| 21569 | | |
| 21570 | | > show #!7 models |
| 21571 | | |
| 21572 | | > hide #!7 models |
| 21573 | | |
| 21574 | | > show #!7 models |
| 21575 | | |
| 21576 | | > hide #!7 models |
| 21577 | | |
| 21578 | | > hide #!8 models |
| 21579 | | |
| 21580 | | > show #!8 models |
| 21581 | | |
| 21582 | | > show #!7 models |
| 21583 | | |
| 21584 | | > hide #!8 models |
| 21585 | | |
| 21586 | | > open "C:/Users/OJS/OneDrive - |
| 21587 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231109_WT_PIP2_109.pdb" |
| 21588 | | |
| 21589 | | Chain information for 231109_WT_PIP2_109.pdb #6 |
| 21590 | | --- |
| 21591 | | Chain | Description |
| 21592 | | A B C D E F | No description available |
| 21593 | | |
| 21594 | | |
| 21595 | | > color #6 #ff557fff |
| 21596 | | |
| 21597 | | > color #6 #ff007fff |
| 21598 | | |
| 21599 | | > color #6 #ff557fff |
| 21600 | | |
| 21601 | | > select add #6 |
| 21602 | | |
| 21603 | | 11658 atoms, 11868 bonds, 6 pseudobonds, 1254 residues, 2 models selected |
| 21604 | | |
| 21605 | | > hide sel atoms |
| 21606 | | |
| 21607 | | > show sel cartoons |
| 21608 | | |
| 21609 | | > ui mousemode right "rotate selected models" |
| 21610 | | |
| 21611 | | > color #6 #ff557fff |
| 21612 | | |
| 21613 | | > view matrix models |
| 21614 | | > #6,0.26097,0.9267,-0.27041,14.791,0.94973,-0.19629,0.24389,-0.23198,0.17293,-0.32046,-0.93134,357.98 |
| 21615 | | |
| 21616 | | > ui mousemode right "translate selected models" |
| 21617 | | |
| 21618 | | > view matrix models |
| 21619 | | > #6,0.26097,0.9267,-0.27041,-28.919,0.94973,-0.19629,0.24389,-16.343,0.17293,-0.32046,-0.93134,338.77 |
| 21620 | | |
| 21621 | | > view matrix models |
| 21622 | | > #6,0.26097,0.9267,-0.27041,-23.946,0.94973,-0.19629,0.24389,-30.565,0.17293,-0.32046,-0.93134,342.72 |
| 21623 | | |
| 21624 | | > ui mousemode right "rotate selected models" |
| 21625 | | |
| 21626 | | > view matrix models |
| 21627 | | > #6,0.10939,0.97803,0.17743,-84.151,0.9828,-0.079712,-0.16656,14.814,-0.14875,0.1926,-0.96994,316.92 |
| 21628 | | |
| 21629 | | > ui mousemode right "translate selected models" |
| 21630 | | |
| 21631 | | > view matrix models |
| 21632 | | > #6,0.10939,0.97803,0.17743,-79.462,0.9828,-0.079712,-0.16656,20.055,-0.14875,0.1926,-0.96994,303.89 |
| 21633 | | |
| 21634 | | > view matrix models |
| 21635 | | > #6,0.10939,0.97803,0.17743,-80.805,0.9828,-0.079712,-0.16656,14.15,-0.14875,0.1926,-0.96994,308.76 |
| 21636 | | |
| 21637 | | > view matrix models |
| 21638 | | > #6,0.10939,0.97803,0.17743,-81.122,0.9828,-0.079712,-0.16656,14.141,-0.14875,0.1926,-0.96994,308.59 |
| 21639 | | |
| 21640 | | > fitmap #6 inMap #1 |
| 21641 | | |
| 21642 | | Fit molecule 231109_WT_PIP2_109.pdb (#6) to map |
| 21643 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 21644 | | average map value = 0.07403, steps = 76 |
| 21645 | | shifted from previous position = 2.43 |
| 21646 | | rotated from previous position = 3.87 degrees |
| 21647 | | atoms outside contour = 9248, contour level = 0.16402 |
| 21648 | | |
| 21649 | | Position of 231109_WT_PIP2_109.pdb (#6) relative to |
| 21650 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 21651 | | Matrix rotation and translation |
| 21652 | | -0.11341985 -0.98690128 -0.11472486 377.23606203 |
| 21653 | | 0.97790726 -0.09048019 -0.18844286 54.62798157 |
| 21654 | | 0.17559417 -0.13356344 0.97536018 -7.17037806 |
| 21655 | | Axis 0.02762063 -0.14611662 0.98888171 |
| 21656 | | Axis point 164.39853407 196.89912116 0.00000000 |
| 21657 | | Rotation angle (degrees) 96.56151736 |
| 21658 | | Shift along axis -4.65321313 |
| 21659 | | |
| 21660 | | |
| 21661 | | > ui mousemode right "rotate selected models" |
| 21662 | | |
| 21663 | | > view matrix models |
| 21664 | | > #6,0.36336,0.91529,0.17379,-112.36,0.93147,-0.35328,-0.086948,55.657,-0.018187,0.19347,-0.98094,285.85 |
| 21665 | | |
| 21666 | | > fitmap #6 inMap #1 |
| 21667 | | |
| 21668 | | Fit molecule 231109_WT_PIP2_109.pdb (#6) to map |
| 21669 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 21670 | | average map value = 0.3534, steps = 140 |
| 21671 | | shifted from previous position = 5.55 |
| 21672 | | rotated from previous position = 14.4 degrees |
| 21673 | | atoms outside contour = 2342, contour level = 0.16402 |
| 21674 | | |
| 21675 | | Position of 231109_WT_PIP2_109.pdb (#6) relative to |
| 21676 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 21677 | | Matrix rotation and translation |
| 21678 | | -0.49983934 -0.86611812 0.00015051 401.24689018 |
| 21679 | | 0.86611813 -0.49983935 0.00000125 107.47907192 |
| 21680 | | 0.00007415 0.00013098 0.99999998 -0.03909655 |
| 21681 | | Axis 0.00007489 0.00004408 1.00000000 |
| 21682 | | Axis point 169.59026523 169.59434710 0.00000000 |
| 21683 | | Rotation angle (degrees) 119.98937251 |
| 21684 | | Shift along axis -0.00430798 |
| 21685 | | |
| 21686 | | |
| 21687 | | > select clear |
| 21688 | | |
| 21689 | | > hide #!7 models |
| 21690 | | |
| 21691 | | > show #!9 models |
| 21692 | | |
| 21693 | | > select clear |
| 21694 | | |
| 21695 | | > select add #6 |
| 21696 | | |
| 21697 | | 11658 atoms, 11868 bonds, 6 pseudobonds, 1254 residues, 2 models selected |
| 21698 | | |
| 21699 | | > ui tool show "Selection Inspector" |
| 21700 | | |
| 21701 | | > setattr =sel p display false |
| 21702 | | |
| 21703 | | Assigning display attribute to 6 items |
| 21704 | | |
| 21705 | | > size =sel stickRadius 0.3 |
| 21706 | | |
| 21707 | | Changed 11868 bond radii |
| 21708 | | |
| 21709 | | > select clear |
| 21710 | | |
| 21711 | | > select |
| 21712 | | |
| 21713 | | 68190 atoms, 69480 bonds, 30 pseudobonds, 6168 residues, 20 models selected |
| 21714 | | |
| 21715 | | > ribbon style thickness 0.6 |
| 21716 | | |
| 21717 | | > select clear |
| 21718 | | |
| 21719 | | > graphics silhouettes true width 2.5 |
| 21720 | | |
| 21721 | | > graphics silhouettes true width 2 |
| 21722 | | |
| 21723 | | > select clear |
| 21724 | | |
| 21725 | | > lighting soft |
| 21726 | | |
| 21727 | | > graphics silhouettes true width 1 |
| 21728 | | |
| 21729 | | > graphics silhouettes true width 1.5 |
| 21730 | | |
| 21731 | | > graphics silhouettes true width 2 |
| 21732 | | |
| 21733 | | > select clear |
| 21734 | | |
| 21735 | | > save "C:/Users/OJS/OneDrive - |
| 21736 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231011_All_Align_wo_POPE.cxs" |
| 21737 | | |
| 21738 | | > save "C:/Users/OJS/OneDrive - |
| 21739 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/MBCD_Align.cxs" |
| 21740 | | |
| 21741 | | > preset cartoons/nucleotides cylinders/stubs |
| 21742 | | |
| 21743 | | Using preset: Cartoons/Nucleotides / Cylinders/Stubs |
| 21744 | | Changed 38395 atom styles |
| 21745 | | Preset expands to these ChimeraX commands: |
| 21746 | | |
| 21747 | | |
| 21748 | | |
| 21749 | | show nucleic |
| 21750 | | hide protein|solvent|H |
| 21751 | | surf hide |
| 21752 | | style (protein|nucleic|solvent) & @@draw_mode=0 stick |
| 21753 | | cartoon |
| 21754 | | cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 |
| 21755 | | cartoon style ~(nucleic|strand) x round |
| 21756 | | cartoon style (nucleic|strand) x rect |
| 21757 | | cartoon style protein modeh tube rad 2 sides 24 thick 0.6 |
| 21758 | | cartoon style nucleic x round width 1.6 thick 1.6 |
| 21759 | | nucleotides stubs |
| 21760 | | |
| 21761 | | |
| 21762 | | |
| 21763 | | > hide #!6 models |
| 21764 | | |
| 21765 | | > show #!6 models |
| 21766 | | |
| 21767 | | > hide #!6 models |
| 21768 | | |
| 21769 | | > show #!6 models |
| 21770 | | |
| 21771 | | > hide #!6 models |
| 21772 | | |
| 21773 | | > view orient |
| 21774 | | |
| 21775 | | > turn x 90 |
| 21776 | | |
| 21777 | | [Repeated 2 time(s)] |
| 21778 | | |
| 21779 | | > select #7,8,9 |
| 21780 | | |
| 21781 | | 32394 atoms, 33240 bonds, 18 pseudobonds, 3630 residues, 6 models selected |
| 21782 | | |
| 21783 | | > select #7,8,9/b,c,e,f |
| 21784 | | |
| 21785 | | 21596 atoms, 22160 bonds, 12 pseudobonds, 2420 residues, 6 models selected |
| 21786 | | |
| 21787 | | > hide sel ribbons |
| 21788 | | |
| 21789 | | > turn y 10 |
| 21790 | | |
| 21791 | | [Repeated 13 time(s)] |
| 21792 | | |
| 21793 | | > select clear |
| 21794 | | |
| 21795 | | > save "C:/Users/OJS/OneDrive - |
| 21796 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 21797 | | |
| 21798 | | > show #!7 models |
| 21799 | | |
| 21800 | | > hide #!7 models |
| 21801 | | |
| 21802 | | > show #!7 models |
| 21803 | | |
| 21804 | | > hide #!7 models |
| 21805 | | |
| 21806 | | > show #!8 models |
| 21807 | | |
| 21808 | | > hide #!8 models |
| 21809 | | |
| 21810 | | > hide #!9 models |
| 21811 | | |
| 21812 | | > show #!8 models |
| 21813 | | |
| 21814 | | > show #!7 models |
| 21815 | | |
| 21816 | | > hide #!8 models |
| 21817 | | |
| 21818 | | > show #!8 models |
| 21819 | | |
| 21820 | | > hide #!7 models |
| 21821 | | |
| 21822 | | > select #7,8,0/b,c,e,f |
| 21823 | | |
| 21824 | | 14820 atoms, 15208 bonds, 8 pseudobonds, 1616 residues, 4 models selected |
| 21825 | | |
| 21826 | | > hide sel atoms |
| 21827 | | |
| 21828 | | > hide #!8 models |
| 21829 | | |
| 21830 | | > show #!7 models |
| 21831 | | |
| 21832 | | > show #!8 models |
| 21833 | | |
| 21834 | | > show #!9 models |
| 21835 | | |
| 21836 | | > hide #!7 models |
| 21837 | | |
| 21838 | | > show #!7 models |
| 21839 | | |
| 21840 | | > hide #!8 models |
| 21841 | | |
| 21842 | | > hide #!9 models |
| 21843 | | |
| 21844 | | > lighting soft |
| 21845 | | |
| 21846 | | [Repeated 1 time(s)] |
| 21847 | | |
| 21848 | | > show #!8 models |
| 21849 | | |
| 21850 | | > show #!9 models |
| 21851 | | |
| 21852 | | > hide #!9 models |
| 21853 | | |
| 21854 | | > hide #!8 models |
| 21855 | | |
| 21856 | | > hide #!7 models |
| 21857 | | |
| 21858 | | > show #!8 models |
| 21859 | | |
| 21860 | | > select add #7 |
| 21861 | | |
| 21862 | | 18324 atoms, 18820 bonds, 10 pseudobonds, 2012 residues, 4 models selected |
| 21863 | | |
| 21864 | | > select add #8 |
| 21865 | | |
| 21866 | | 22230 atoms, 22812 bonds, 12 pseudobonds, 2424 residues, 4 models selected |
| 21867 | | |
| 21868 | | > select subtract #8 |
| 21869 | | |
| 21870 | | 10512 atoms, 10836 bonds, 6 pseudobonds, 1188 residues, 2 models selected |
| 21871 | | |
| 21872 | | > select subtract #7 |
| 21873 | | |
| 21874 | | Nothing selected |
| 21875 | | |
| 21876 | | > view name 1 |
| 21877 | | |
| 21878 | | > save "C:/Users/OJS/OneDrive - |
| 21879 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 21880 | | |
| 21881 | | > hide #!8 models |
| 21882 | | |
| 21883 | | > show #!9 models |
| 21884 | | |
| 21885 | | > select ::name="MC3" |
| 21886 | | |
| 21887 | | 3288 atoms, 3180 bonds, 108 residues, 3 models selected |
| 21888 | | |
| 21889 | | > color sel black |
| 21890 | | |
| 21891 | | > select clear |
| 21892 | | |
| 21893 | | > select ::name="MC3" |
| 21894 | | |
| 21895 | | 3288 atoms, 3180 bonds, 108 residues, 3 models selected |
| 21896 | | |
| 21897 | | > color sel dark gray |
| 21898 | | |
| 21899 | | > color sel light gray |
| 21900 | | |
| 21901 | | > select clear |
| 21902 | | |
| 21903 | | > color sel white |
| 21904 | | |
| 21905 | | > select ::name="MC3" |
| 21906 | | |
| 21907 | | 3288 atoms, 3180 bonds, 108 residues, 3 models selected |
| 21908 | | |
| 21909 | | > color sel white |
| 21910 | | |
| 21911 | | > select clear |
| 21912 | | |
| 21913 | | > select ::name="MC3" |
| 21914 | | |
| 21915 | | 3288 atoms, 3180 bonds, 108 residues, 3 models selected |
| 21916 | | |
| 21917 | | > color sel cyan |
| 21918 | | |
| 21919 | | > color sel orange |
| 21920 | | |
| 21921 | | > select clear |
| 21922 | | |
| 21923 | | > select ::name="6OU" |
| 21924 | | |
| 21925 | | 2940 atoms, 2880 bonds, 60 residues, 3 models selected |
| 21926 | | |
| 21927 | | > color sel orange |
| 21928 | | |
| 21929 | | > color sel byhetero |
| 21930 | | |
| 21931 | | > select ::name="PTY" |
| 21932 | | |
| 21933 | | 2028 atoms, 1980 bonds, 48 residues, 4 models selected |
| 21934 | | |
| 21935 | | > color sel orange |
| 21936 | | |
| 21937 | | > color sel byhetero |
| 21938 | | |
| 21939 | | > select ::name="MC3" |
| 21940 | | |
| 21941 | | 3288 atoms, 3180 bonds, 108 residues, 3 models selected |
| 21942 | | |
| 21943 | | > color sel gray |
| 21944 | | |
| 21945 | | > select clear |
| 21946 | | |
| 21947 | | > show #!7 models |
| 21948 | | |
| 21949 | | > hide #!9 models |
| 21950 | | |
| 21951 | | > show #!8 models |
| 21952 | | |
| 21953 | | > hide #!7 models |
| 21954 | | |
| 21955 | | > show #!7 models |
| 21956 | | |
| 21957 | | > hide #!8 models |
| 21958 | | |
| 21959 | | > show #!9 models |
| 21960 | | |
| 21961 | | > hide #!9 models |
| 21962 | | |
| 21963 | | > show #!8 models |
| 21964 | | |
| 21965 | | > hide #!8 models |
| 21966 | | |
| 21967 | | > hide #!7 models |
| 21968 | | |
| 21969 | | > show #!7 models |
| 21970 | | |
| 21971 | | > hide #!7 models |
| 21972 | | |
| 21973 | | > show #!8 models |
| 21974 | | |
| 21975 | | > hide #!8 models |
| 21976 | | |
| 21977 | | > show #!9 models |
| 21978 | | |
| 21979 | | > hide #!9 models |
| 21980 | | |
| 21981 | | > show #!1 models |
| 21982 | | |
| 21983 | | > hide #!1 models |
| 21984 | | |
| 21985 | | > show #!6 models |
| 21986 | | |
| 21987 | | > select #6/b,c,e,f |
| 21988 | | |
| 21989 | | 7772 atoms, 7912 bonds, 4 pseudobonds, 836 residues, 2 models selected |
| 21990 | | |
| 21991 | | > hide sel ribbons |
| 21992 | | |
| 21993 | | > select |
| 21994 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 21995 | | |
| 21996 | | 10194 atoms, 10086 bonds, 258 residues, 5 models selected |
| 21997 | | |
| 21998 | | > show sel atoms |
| 21999 | | |
| 22000 | | > select #6/b,c,e,f |
| 22001 | | |
| 22002 | | 7772 atoms, 7912 bonds, 4 pseudobonds, 836 residues, 2 models selected |
| 22003 | | |
| 22004 | | > hide sel atoms |
| 22005 | | |
| 22006 | | > select ::name="PIO" |
| 22007 | | |
| 22008 | | 258 atoms, 258 bonds, 6 residues, 1 model selected |
| 22009 | | |
| 22010 | | > color sel dark green |
| 22011 | | |
| 22012 | | > color sel byhetero |
| 22013 | | |
| 22014 | | > select clear |
| 22015 | | |
| 22016 | | > view 1 |
| 22017 | | |
| 22018 | | > save "C:/Users/OJS/OneDrive - |
| 22019 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/1a_Align.cxs" |
| 22020 | | |
| 22021 | | > hide #!6 models |
| 22022 | | |
| 22023 | | > show #!7 models |
| 22024 | | |
| 22025 | | > hide #!7 models |
| 22026 | | |
| 22027 | | > show #!7 models |
| 22028 | | |
| 22029 | | > view 1 |
| 22030 | | |
| 22031 | | > turn x 90 |
| 22032 | | |
| 22033 | | [Repeated 5 time(s)] |
| 22034 | | |
| 22035 | | > show #!8 models |
| 22036 | | |
| 22037 | | > hide #!8 models |
| 22038 | | |
| 22039 | | > select #6,7,8,9/b,c,e,f |
| 22040 | | |
| 22041 | | 29368 atoms, 30072 bonds, 16 pseudobonds, 3256 residues, 8 models selected |
| 22042 | | |
| 22043 | | > hide sel atoms |
| 22044 | | |
| 22045 | | > turn x 90 |
| 22046 | | |
| 22047 | | [Repeated 4 time(s)] |
| 22048 | | |
| 22049 | | > hide #!7 models |
| 22050 | | |
| 22051 | | > show #!6 models |
| 22052 | | |
| 22053 | | > hide #!6 models |
| 22054 | | |
| 22055 | | > show #!7 models |
| 22056 | | |
| 22057 | | > hide #!7 models |
| 22058 | | |
| 22059 | | > save "C:/Users/OJS/OneDrive - |
| 22060 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 22061 | | |
| 22062 | | ——— End of log from Thu Nov 9 05:24:54 2023 ——— |
| 22063 | | |
| 22064 | | opened ChimeraX session |
| 22065 | | |
| 22066 | | > show #!9 models |
| 22067 | | |
| 22068 | | > show #!8 models |
| 22069 | | |
| 22070 | | > show #!6 models |
| 22071 | | |
| 22072 | | > show #!7 models |
| 22073 | | |
| 22074 | | > select add #6 |
| 22075 | | |
| 22076 | | 33254 atoms, 34028 bonds, 18 pseudobonds, 3674 residues, 8 models selected |
| 22077 | | |
| 22078 | | > select add #7 |
| 22079 | | |
| 22080 | | 36758 atoms, 37640 bonds, 20 pseudobonds, 4070 residues, 8 models selected |
| 22081 | | |
| 22082 | | > select add #8 |
| 22083 | | |
| 22084 | | 40664 atoms, 41632 bonds, 22 pseudobonds, 4482 residues, 8 models selected |
| 22085 | | |
| 22086 | | > select add #9 |
| 22087 | | |
| 22088 | | 44052 atoms, 45108 bonds, 24 pseudobonds, 4884 residues, 8 models selected |
| 22089 | | |
| 22090 | | > select subtract #8 |
| 22091 | | |
| 22092 | | 32334 atoms, 33132 bonds, 18 pseudobonds, 3648 residues, 6 models selected |
| 22093 | | |
| 22094 | | > select subtract #7 |
| 22095 | | |
| 22096 | | 21822 atoms, 22296 bonds, 12 pseudobonds, 2460 residues, 4 models selected |
| 22097 | | |
| 22098 | | > select subtract #6 |
| 22099 | | |
| 22100 | | 10164 atoms, 10428 bonds, 6 pseudobonds, 1206 residues, 2 models selected |
| 22101 | | |
| 22102 | | > select subtract #9 |
| 22103 | | |
| 22104 | | Nothing selected |
| 22105 | | |
| 22106 | | > turn x 90 |
| 22107 | | |
| 22108 | | > select clear |
| 22109 | | |
| 22110 | | > hide #!7 models |
| 22111 | | |
| 22112 | | > hide #!6 models |
| 22113 | | |
| 22114 | | > show #!7 models |
| 22115 | | |
| 22116 | | > hide #!7 models |
| 22117 | | |
| 22118 | | > show #!7 models |
| 22119 | | |
| 22120 | | > hide #!8 models |
| 22121 | | |
| 22122 | | > hide #!9 models |
| 22123 | | |
| 22124 | | > view 1 |
| 22125 | | |
| 22126 | | > show #!2 models |
| 22127 | | |
| 22128 | | > hide #!2 models |
| 22129 | | |
| 22130 | | > show #!2 models |
| 22131 | | |
| 22132 | | > clip front 0 |
| 22133 | | |
| 22134 | | > clip back 0 |
| 22135 | | |
| 22136 | | clip back plane is in front of front plane |
| 22137 | | |
| 22138 | | > clip back 1 |
| 22139 | | |
| 22140 | | [Repeated 1 time(s)] |
| 22141 | | |
| 22142 | | > clip front -1 |
| 22143 | | |
| 22144 | | [Repeated 5 time(s)] |
| 22145 | | |
| 22146 | | > hide #!7 models |
| 22147 | | |
| 22148 | | > show #!7 models |
| 22149 | | |
| 22150 | | > ~clip |
| 22151 | | |
| 22152 | | > view 1 |
| 22153 | | |
| 22154 | | > volume zone #4 nearAtoms #7/a,d |
| 22155 | | |
| 22156 | | > volume zone #2 nearAtoms #7/a,d |
| 22157 | | |
| 22158 | | > transparency 50 |
| 22159 | | |
| 22160 | | > transparency 80 |
| 22161 | | |
| 22162 | | > transparency 90 |
| 22163 | | |
| 22164 | | > view 1 |
| 22165 | | |
| 22166 | | > transparency 50 |
| 22167 | | |
| 22168 | | > transparency 20 |
| 22169 | | |
| 22170 | | > transparency 75 |
| 22171 | | |
| 22172 | | > ~clip |
| 22173 | | |
| 22174 | | > ~zone |
| 22175 | | |
| 22176 | | Unknown command: ~zone |
| 22177 | | |
| 22178 | | > unzone |
| 22179 | | |
| 22180 | | Unknown command: unzone |
| 22181 | | |
| 22182 | | > ~zone |
| 22183 | | |
| 22184 | | Unknown command: ~zone |
| 22185 | | |
| 22186 | | > ~volume zome |
| 22187 | | |
| 22188 | | Unknown command: ~volume zome |
| 22189 | | |
| 22190 | | > ~volume zone |
| 22191 | | |
| 22192 | | Unknown command: ~volume zone |
| 22193 | | |
| 22194 | | > zone clear |
| 22195 | | |
| 22196 | | > clear zone |
| 22197 | | |
| 22198 | | Unknown command: clear zone |
| 22199 | | |
| 22200 | | > volume #2 level 0.1237 |
| 22201 | | |
| 22202 | | > volume #2 level 0.09867 |
| 22203 | | |
| 22204 | | > view 1 |
| 22205 | | |
| 22206 | | > hide #!2 models |
| 22207 | | |
| 22208 | | > show #!2 models |
| 22209 | | |
| 22210 | | > show #!8 models |
| 22211 | | |
| 22212 | | > hide #!8 models |
| 22213 | | |
| 22214 | | > show #!8 models |
| 22215 | | |
| 22216 | | > hide #!7 models |
| 22217 | | |
| 22218 | | > show #!3 models |
| 22219 | | |
| 22220 | | > hide #!2 models |
| 22221 | | |
| 22222 | | > show #!2 models |
| 22223 | | |
| 22224 | | > hide #!2 models |
| 22225 | | |
| 22226 | | > show #!2 models |
| 22227 | | |
| 22228 | | > hide #!2 models |
| 22229 | | |
| 22230 | | > hide #!8 models |
| 22231 | | |
| 22232 | | > show #!8 models |
| 22233 | | |
| 22234 | | > hide #!8 models |
| 22235 | | |
| 22236 | | > show #!7 models |
| 22237 | | |
| 22238 | | > hide #!3 models |
| 22239 | | |
| 22240 | | > show #!2 models |
| 22241 | | |
| 22242 | | > volume zone #2 nearAtoms #7/a,d:300-360 |
| 22243 | | |
| 22244 | | [Repeated 1 time(s)] |
| 22245 | | |
| 22246 | | > select clear |
| 22247 | | |
| 22248 | | > volume #2 level 0.09867 |
| 22249 | | |
| 22250 | | > select clear |
| 22251 | | |
| 22252 | | > view 1 |
| 22253 | | |
| 22254 | | > select clear |
| 22255 | | |
| 22256 | | > view 1 |
| 22257 | | |
| 22258 | | [Repeated 1 time(s)] |
| 22259 | | |
| 22260 | | > hide #!2 models |
| 22261 | | |
| 22262 | | > hide #!7 models |
| 22263 | | |
| 22264 | | > show #!3 models |
| 22265 | | |
| 22266 | | > show #!8 models |
| 22267 | | |
| 22268 | | > volume zone #3 nearAtoms #8/a,d:300-360 |
| 22269 | | |
| 22270 | | > volume #3 level 0.1267 |
| 22271 | | |
| 22272 | | > select clear |
| 22273 | | |
| 22274 | | > view 1 |
| 22275 | | |
| 22276 | | > hide #!8 models |
| 22277 | | |
| 22278 | | > hide #!3 models |
| 22279 | | |
| 22280 | | > show #!4 models |
| 22281 | | |
| 22282 | | > show #!9 models |
| 22283 | | |
| 22284 | | > volume zone #4 nearAtoms #9/a,d:300-360 |
| 22285 | | |
| 22286 | | [Repeated 1 time(s)] |
| 22287 | | |
| 22288 | | > volume #4 level 0.05053 |
| 22289 | | |
| 22290 | | > save "C:/Users/OJS/OneDrive - |
| 22291 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/b_lipids_position.cxs" |
| 22292 | | |
| 22293 | | > select #7,8,9/a,d:30 |
| 22294 | | |
| 22295 | | 66 atoms, 66 bonds, 6 residues, 3 models selected |
| 22296 | | |
| 22297 | | > show sel atoms |
| 22298 | | |
| 22299 | | > select clear |
| 22300 | | |
| 22301 | | > select #7,8,9/a,d:30 |
| 22302 | | |
| 22303 | | 66 atoms, 66 bonds, 6 residues, 3 models selected |
| 22304 | | |
| 22305 | | > color sel magenta |
| 22306 | | |
| 22307 | | > select clear |
| 22308 | | |
| 22309 | | > view 1 |
| 22310 | | |
| 22311 | | > volume zone #4 nearAtoms #9/a,d:300-360 |
| 22312 | | |
| 22313 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 3 |
| 22314 | | |
| 22315 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 5 |
| 22316 | | |
| 22317 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 4 |
| 22318 | | |
| 22319 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 2 |
| 22320 | | |
| 22321 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 3 |
| 22322 | | |
| 22323 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 2.5 |
| 22324 | | |
| 22325 | | [Repeated 2 time(s)] |
| 22326 | | |
| 22327 | | > hide #!9 models |
| 22328 | | |
| 22329 | | > show #!8 models |
| 22330 | | |
| 22331 | | > hide #!4 models |
| 22332 | | |
| 22333 | | > show #!3 models |
| 22334 | | |
| 22335 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2.5 |
| 22336 | | |
| 22337 | | [Repeated 1 time(s)] |
| 22338 | | |
| 22339 | | > hide #!3 models |
| 22340 | | |
| 22341 | | > show #!2 models |
| 22342 | | |
| 22343 | | > hide #!8 models |
| 22344 | | |
| 22345 | | > show #!7 models |
| 22346 | | |
| 22347 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2.5 |
| 22348 | | |
| 22349 | | [Repeated 1 time(s)] |
| 22350 | | |
| 22351 | | > show #!3 models |
| 22352 | | |
| 22353 | | > show #!4 models |
| 22354 | | |
| 22355 | | > hide #!4 models |
| 22356 | | |
| 22357 | | > hide #!3 models |
| 22358 | | |
| 22359 | | > hide #!7 models |
| 22360 | | |
| 22361 | | > hide #!2 models |
| 22362 | | |
| 22363 | | > show #!7 models |
| 22364 | | |
| 22365 | | > show #!8 models |
| 22366 | | |
| 22367 | | > show #!9 models |
| 22368 | | |
| 22369 | | > view name 1 |
| 22370 | | |
| 22371 | | > save "C:/Users/OJS/OneDrive - |
| 22372 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/b_lipids_position.cxs" |
| 22373 | | |
| 22374 | | ——— End of log from Thu Nov 9 07:14:57 2023 ——— |
| 22375 | | |
| 22376 | | opened ChimeraX session |
| 22377 | | |
| 22378 | | > show #!2 models |
| 22379 | | |
| 22380 | | > hide #!8 models |
| 22381 | | |
| 22382 | | > hide #!9 models |
| 22383 | | |
| 22384 | | > volume #2 level 0.0705 |
| 22385 | | |
| 22386 | | > show #!8 models |
| 22387 | | |
| 22388 | | > hide #!7 models |
| 22389 | | |
| 22390 | | > show #!7 models |
| 22391 | | |
| 22392 | | > hide #!7 models |
| 22393 | | |
| 22394 | | > show #!7 models |
| 22395 | | |
| 22396 | | > hide #!7 models |
| 22397 | | |
| 22398 | | > hide #!2 models |
| 22399 | | |
| 22400 | | > show #!3 models |
| 22401 | | |
| 22402 | | > volume #3 level 0.1335 |
| 22403 | | |
| 22404 | | > hide #!3 models |
| 22405 | | |
| 22406 | | > show #!4 models |
| 22407 | | |
| 22408 | | > hide #!8 models |
| 22409 | | |
| 22410 | | > show #!9 models |
| 22411 | | |
| 22412 | | > volume #4 level 0.05053 |
| 22413 | | |
| 22414 | | > volume #4 level 0.07251 |
| 22415 | | |
| 22416 | | > volume #4 level 0.0672 |
| 22417 | | |
| 22418 | | > volume #4 level 0.05129 |
| 22419 | | |
| 22420 | | > volume #4 level 0.05735 |
| 22421 | | |
| 22422 | | > volume #4 level 0.06569 |
| 22423 | | |
| 22424 | | > volume #4 level 0.06341 |
| 22425 | | |
| 22426 | | > volume zone #4 nearAtoms #7/a,d:300-360 range 3 |
| 22427 | | |
| 22428 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 3 |
| 22429 | | |
| 22430 | | [Repeated 1 time(s)] |
| 22431 | | |
| 22432 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 3.5 |
| 22433 | | |
| 22434 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 3 |
| 22435 | | |
| 22436 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 2.5 |
| 22437 | | |
| 22438 | | [Repeated 2 time(s)] |
| 22439 | | |
| 22440 | | > volume #4 level 0.06 |
| 22441 | | |
| 22442 | | > volume #4 level 0.07 |
| 22443 | | |
| 22444 | | > volume #4 level 0.05 |
| 22445 | | |
| 22446 | | > volume #4 level 0.04 |
| 22447 | | |
| 22448 | | > volume #4 level 0.055 |
| 22449 | | |
| 22450 | | > volume #4 level 0.052 |
| 22451 | | |
| 22452 | | > volume #4 level 0.053 |
| 22453 | | |
| 22454 | | > volume #4 level 0.056 |
| 22455 | | |
| 22456 | | > volume #4 level 0.057 |
| 22457 | | |
| 22458 | | > volume #4 level 0.058 |
| 22459 | | |
| 22460 | | > volume #4 level 0.056 |
| 22461 | | |
| 22462 | | > volume #4 level 0.054 |
| 22463 | | |
| 22464 | | > volume #4 level 0.055 |
| 22465 | | |
| 22466 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 3 |
| 22467 | | |
| 22468 | | [Repeated 1 time(s)] |
| 22469 | | |
| 22470 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 4 |
| 22471 | | |
| 22472 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 3 |
| 22473 | | |
| 22474 | | [Repeated 2 time(s)] |
| 22475 | | |
| 22476 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 1 |
| 22477 | | |
| 22478 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 2 |
| 22479 | | |
| 22480 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 3 |
| 22481 | | |
| 22482 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 2 |
| 22483 | | |
| 22484 | | > volume #4 level 0.0459 |
| 22485 | | |
| 22486 | | > volume zone #4 nearAtoms #9/a,d:300-360 range 2.5 |
| 22487 | | |
| 22488 | | > volume #4 level 0.05348 |
| 22489 | | |
| 22490 | | > volume #4 level 0.04894 |
| 22491 | | |
| 22492 | | > volume #4 level 0.05197 |
| 22493 | | |
| 22494 | | > volume #4 level 0.05348 |
| 22495 | | |
| 22496 | | > view 1 |
| 22497 | | |
| 22498 | | [Repeated 1 time(s)] |
| 22499 | | |
| 22500 | | > hide #!4 models |
| 22501 | | |
| 22502 | | > show #!3 models |
| 22503 | | |
| 22504 | | > show #!8 models |
| 22505 | | |
| 22506 | | > hide #!9 models |
| 22507 | | |
| 22508 | | > show #!7 models |
| 22509 | | |
| 22510 | | > hide #!8 models |
| 22511 | | |
| 22512 | | > show #!2 models |
| 22513 | | |
| 22514 | | > hide #!3 models |
| 22515 | | |
| 22516 | | > hide #!2 models |
| 22517 | | |
| 22518 | | > show #!3 models |
| 22519 | | |
| 22520 | | > hide #!7 models |
| 22521 | | |
| 22522 | | > show #!8 models |
| 22523 | | |
| 22524 | | > save "C:/Users/OJS/OneDrive - |
| 22525 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/b_lipids_position.cxs" |
| 22526 | | |
| 22527 | | > volume #3 level 0.1542 |
| 22528 | | |
| 22529 | | > volume #3 level 0.09919 |
| 22530 | | |
| 22531 | | > volume #3 level 0.08545 |
| 22532 | | |
| 22533 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 1 |
| 22534 | | |
| 22535 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2 |
| 22536 | | |
| 22537 | | > volume #3 level 0.08545 |
| 22538 | | |
| 22539 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2.2 |
| 22540 | | |
| 22541 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2.3 |
| 22542 | | |
| 22543 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2.1 |
| 22544 | | |
| 22545 | | > volume #3 level 0.09919 |
| 22546 | | |
| 22547 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2 |
| 22548 | | |
| 22549 | | [Repeated 2 time(s)] |
| 22550 | | |
| 22551 | | > select clear |
| 22552 | | |
| 22553 | | > volume #3 level 0.0717 |
| 22554 | | |
| 22555 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 1.5 |
| 22556 | | |
| 22557 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 1.8 |
| 22558 | | |
| 22559 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2.2 |
| 22560 | | |
| 22561 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2 |
| 22562 | | |
| 22563 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2.5 |
| 22564 | | |
| 22565 | | > volume #3 level 0.1198 |
| 22566 | | |
| 22567 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2.2 |
| 22568 | | |
| 22569 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2.3 |
| 22570 | | |
| 22571 | | > volume zone #3 nearAtoms #8/a,d:300-360 range 2.1 |
| 22572 | | |
| 22573 | | > volume #3 level 0.09919 |
| 22574 | | |
| 22575 | | > hide #!8 models |
| 22576 | | |
| 22577 | | > hide #!3 models |
| 22578 | | |
| 22579 | | > show #!2 models |
| 22580 | | |
| 22581 | | > show #!7 models |
| 22582 | | |
| 22583 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2.1 |
| 22584 | | |
| 22585 | | [Repeated 1 time(s)] |
| 22586 | | |
| 22587 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2.2 |
| 22588 | | |
| 22589 | | [Repeated 1 time(s)] |
| 22590 | | |
| 22591 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2.5 |
| 22592 | | |
| 22593 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2.3 |
| 22594 | | |
| 22595 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2.5 |
| 22596 | | |
| 22597 | | [Repeated 2 time(s)] |
| 22598 | | |
| 22599 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2.2 |
| 22600 | | |
| 22601 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2.1 |
| 22602 | | |
| 22603 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2 |
| 22604 | | |
| 22605 | | [Repeated 2 time(s)] |
| 22606 | | |
| 22607 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2.5 |
| 22608 | | |
| 22609 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 3 |
| 22610 | | |
| 22611 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2 |
| 22612 | | |
| 22613 | | > volume #2 level 0.07989 |
| 22614 | | |
| 22615 | | > volume #2 level 0.0705 |
| 22616 | | |
| 22617 | | > volume zone #2 nearAtoms #7/a,d:300-360 range 2.5 |
| 22618 | | |
| 22619 | | > volume #2 level 0.0705 |
| 22620 | | |
| 22621 | | > volume #2 level 0.07989 |
| 22622 | | |
| 22623 | | > volume #2 level 0.09241 |
| 22624 | | |
| 22625 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 2.5 |
| 22626 | | |
| 22627 | | > volume #2 level 0.07989 |
| 22628 | | |
| 22629 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 2 |
| 22630 | | |
| 22631 | | > volume #2 level 0.05171 |
| 22632 | | |
| 22633 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 1.5 |
| 22634 | | |
| 22635 | | > volume #2 level 0.07676 |
| 22636 | | |
| 22637 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 2 |
| 22638 | | |
| 22639 | | > volume #2 level 0.07989 |
| 22640 | | |
| 22641 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 2.5 |
| 22642 | | |
| 22643 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 2.6 |
| 22644 | | |
| 22645 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 2.7 |
| 22646 | | |
| 22647 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 2.8 |
| 22648 | | |
| 22649 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 2.9 |
| 22650 | | |
| 22651 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 3 |
| 22652 | | |
| 22653 | | [Repeated 1 time(s)] |
| 22654 | | |
| 22655 | | > volume #2 level 0.09554 |
| 22656 | | |
| 22657 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 2 |
| 22658 | | |
| 22659 | | [Repeated 2 time(s)] |
| 22660 | | |
| 22661 | | > volume #2 level 0.07989 |
| 22662 | | |
| 22663 | | > volume zone #2 nearAtoms #7/a,d:30,300-360 range 2.5 |
| 22664 | | |
| 22665 | | > hide #!2 models |
| 22666 | | |
| 22667 | | > show #!3 models |
| 22668 | | |
| 22669 | | > hide #!7 models |
| 22670 | | |
| 22671 | | > show #!8 models |
| 22672 | | |
| 22673 | | > volume zone #3 nearAtoms #8/a,d:30,300-360 range 2.5 |
| 22674 | | |
| 22675 | | [Repeated 1 time(s)] |
| 22676 | | |
| 22677 | | > volume #3 level 0.1198 |
| 22678 | | |
| 22679 | | > volume zone #3 nearAtoms #8/a,d:30,300-360 range 2 |
| 22680 | | |
| 22681 | | [Repeated 1 time(s)] |
| 22682 | | |
| 22683 | | > volume zone #3 nearAtoms #8/a,d:30,300-360 range 2.2 |
| 22684 | | |
| 22685 | | > volume zone #3 nearAtoms #8/a,d:30,300-360 range 2.3 |
| 22686 | | |
| 22687 | | > volume zone #3 nearAtoms #8/a,d:30,300-360 range 2.5 |
| 22688 | | |
| 22689 | | > volume zone #3 nearAtoms #8/a,d:30,300-360 range 3 |
| 22690 | | |
| 22691 | | > volume zone #3 nearAtoms #8/a,d:30,300-360 range 2.5 |
| 22692 | | |
| 22693 | | > volume #3 level 0.1542 |
| 22694 | | |
| 22695 | | > hide #!3 models |
| 22696 | | |
| 22697 | | > show #!4 models |
| 22698 | | |
| 22699 | | > hide #!8 models |
| 22700 | | |
| 22701 | | > show #!9 models |
| 22702 | | |
| 22703 | | > volume zone #4 nearAtoms #9/a,d:30,300-360 range 2.5 |
| 22704 | | |
| 22705 | | > volume #4 level 0.04211 |
| 22706 | | |
| 22707 | | > volume zone #4 nearAtoms #9/a,d:30,300-360 range 2 |
| 22708 | | |
| 22709 | | > volume zone #4 nearAtoms #9/a,d:30,300-360 range 3 |
| 22710 | | |
| 22711 | | > volume zone #4 nearAtoms #9/a,d:30,300-360 range 2 |
| 22712 | | |
| 22713 | | > .5 |
| 22714 | | |
| 22715 | | Unknown command: .5 |
| 22716 | | |
| 22717 | | > volume zone #4 nearAtoms #9/a,d:30,300-360 range 2.5 |
| 22718 | | |
| 22719 | | [Repeated 1 time(s)] |
| 22720 | | |
| 22721 | | > volume #4 level 0.04894 |
| 22722 | | |
| 22723 | | > volume #4 level 0.04969 |
| 22724 | | |
| 22725 | | > volume #4 level 0.05197 |
| 22726 | | |
| 22727 | | > volume #4 level 0.07622 |
| 22728 | | |
| 22729 | | > volume #4 level 0.05652 |
| 22730 | | |
| 22731 | | > volume zone #4 nearAtoms #9/a,d:2-5,30,300-360 range 2.5 |
| 22732 | | |
| 22733 | | > volume zone #4 nearAtoms #9/a,d:30,300-360 range 2.5 |
| 22734 | | |
| 22735 | | > view 1 |
| 22736 | | |
| 22737 | | > save "C:/Users/OJS/OneDrive - |
| 22738 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/b_lipids_position.cxs" |
| 22739 | | |
| 22740 | | > hide #!4 models |
| 22741 | | |
| 22742 | | > show #!3 models |
| 22743 | | |
| 22744 | | > hide #!9 models |
| 22745 | | |
| 22746 | | > show #!8 models |
| 22747 | | |
| 22748 | | > hide #!8 models |
| 22749 | | |
| 22750 | | > show #!7 models |
| 22751 | | |
| 22752 | | > hide #!3 models |
| 22753 | | |
| 22754 | | > show #!2 models |
| 22755 | | |
| 22756 | | > show #!8 models |
| 22757 | | |
| 22758 | | > hide #!7 models |
| 22759 | | |
| 22760 | | > show #!3 models |
| 22761 | | |
| 22762 | | > hide #!2 models |
| 22763 | | |
| 22764 | | > save "C:/Users/OJS/OneDrive - |
| 22765 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/b_lipids_position.cxs" |
| 22766 | | |
| 22767 | | > turn x 180 |
| 22768 | | |
| 22769 | | > save "C:/Users/OJS/OneDrive - korea.ac.kr/MCSB/논문/230801_Re/MBCD/c_F30.cxs" |
| 22770 | | |
| 22771 | | ——— End of log from Thu Nov 9 08:38:33 2023 ——— |
| 22772 | | |
| 22773 | | opened ChimeraX session |
| 22774 | | |
| 22775 | | > hide #!3 models |
| 22776 | | |
| 22777 | | > show #!2 models |
| 22778 | | |
| 22779 | | > hide #!2 models |
| 22780 | | |
| 22781 | | > view 1 |
| 22782 | | |
| 22783 | | > turn y 10 |
| 22784 | | |
| 22785 | | [Repeated 2 time(s)] |
| 22786 | | |
| 22787 | | > select #7,8,9/d |
| 22788 | | |
| 22789 | | 5399 atoms, 5540 bonds, 3 pseudobonds, 605 residues, 6 models selected |
| 22790 | | |
| 22791 | | > hide sel ribbons |
| 22792 | | |
| 22793 | | > hide sel atoms |
| 22794 | | |
| 22795 | | > select clear |
| 22796 | | |
| 22797 | | > turn y 10 |
| 22798 | | |
| 22799 | | [Repeated 5 time(s)] |
| 22800 | | |
| 22801 | | > view 1 |
| 22802 | | |
| 22803 | | > turn y 90 |
| 22804 | | |
| 22805 | | > show #!3 models |
| 22806 | | |
| 22807 | | > hide #!3 models |
| 22808 | | |
| 22809 | | > volume zone #3 nearAtoms #8/d:30,306 range 2.5 |
| 22810 | | |
| 22811 | | > show #!3 models |
| 22812 | | |
| 22813 | | > volume zone #3 nearAtoms #8/a:30,306 range 2.5 |
| 22814 | | |
| 22815 | | > select clear |
| 22816 | | |
| 22817 | | > volume zone #3 nearAtoms #8/a:30,306 range 2.4 |
| 22818 | | |
| 22819 | | > volume zone #3 nearAtoms #8/a:30,306 range 2.3 |
| 22820 | | |
| 22821 | | [Repeated 1 time(s)] |
| 22822 | | |
| 22823 | | > volume zone #3 nearAtoms #8/a:30,306 range 2.2 |
| 22824 | | |
| 22825 | | > volume zone #3 nearAtoms #8/a:30,306 range 2.1 |
| 22826 | | |
| 22827 | | > volume zone #3 nearAtoms #8/a:30,306 range 2. |
| 22828 | | |
| 22829 | | > volume zone #3 nearAtoms #8/a:30,306 range 2.2 |
| 22830 | | |
| 22831 | | > volume zone #3 nearAtoms #8/a:30,306 range 2.4 |
| 22832 | | |
| 22833 | | > volume zone #3 nearAtoms #8/a:30,306 range 2.5 |
| 22834 | | |
| 22835 | | > save "C:/Users/OJS/OneDrive - korea.ac.kr/MCSB/논문/230801_Re/MBCD/c_F30.cxs" |
| 22836 | | |
| 22837 | | ——— End of log from Thu Nov 9 16:49:07 2023 ——— |
| 22838 | | |
| 22839 | | opened ChimeraX session |
| 22840 | | |
| 22841 | | > view 2 |
| 22842 | | |
| 22843 | | Expected an objects specifier or a view name or a keyword |
| 22844 | | |
| 22845 | | > view 1 |
| 22846 | | |
| 22847 | | > turn y 90 |
| 22848 | | |
| 22849 | | > view 2 |
| 22850 | | |
| 22851 | | Expected an objects specifier or a view name or a keyword |
| 22852 | | |
| 22853 | | > view 1 |
| 22854 | | |
| 22855 | | > turn x 90 |
| 22856 | | |
| 22857 | | [Repeated 1 time(s)] |
| 22858 | | |
| 22859 | | > view 1 |
| 22860 | | |
| 22861 | | > turn y 90 |
| 22862 | | |
| 22863 | | > show #!7 models |
| 22864 | | |
| 22865 | | > hide #!8 models |
| 22866 | | |
| 22867 | | > hide #!3 models |
| 22868 | | |
| 22869 | | > show #!2 models |
| 22870 | | |
| 22871 | | > volume zone #2 nearAtoms #7/a:30,305 range 2.5 |
| 22872 | | |
| 22873 | | > volume #2 level 0.0705 |
| 22874 | | |
| 22875 | | > volume zone #2 nearAtoms #7/a:30,305 range 2.4 |
| 22876 | | |
| 22877 | | > volume zone #2 nearAtoms #7/a:30,305 range 2.3 |
| 22878 | | |
| 22879 | | > volume zone #2 nearAtoms #7/a:30,305 range 2.2 |
| 22880 | | |
| 22881 | | > hide #!7 models |
| 22882 | | |
| 22883 | | > show #!8 models |
| 22884 | | |
| 22885 | | > hide #!2 models |
| 22886 | | |
| 22887 | | > show #!3 models |
| 22888 | | |
| 22889 | | > volume #3 level 0.1816 |
| 22890 | | |
| 22891 | | > volume zone #3 nearAtoms #8/a:30,306 range 2.2 |
| 22892 | | |
| 22893 | | [Repeated 1 time(s)] |
| 22894 | | |
| 22895 | | > volume #3 level 0.1679 |
| 22896 | | |
| 22897 | | > hide #!8 models |
| 22898 | | |
| 22899 | | > show #!9 models |
| 22900 | | |
| 22901 | | > hide #!3 models |
| 22902 | | |
| 22903 | | > show #!4 models |
| 22904 | | |
| 22905 | | > volume zone #4 nearAtoms #9/a:30,302 range 2.2 |
| 22906 | | |
| 22907 | | > volume zone #4 nearAtoms #9/a:30,302 range 2.5 |
| 22908 | | |
| 22909 | | > volume zone #4 nearAtoms #9/a:30,302 range 3 |
| 22910 | | |
| 22911 | | > volume zone #4 nearAtoms #9/a:30,302 range 2.7 |
| 22912 | | |
| 22913 | | > volume zone #4 nearAtoms #9/a:30,302 range 2.6 |
| 22914 | | |
| 22915 | | > volume zone #4 nearAtoms #9/a:30,302 range 2.5 |
| 22916 | | |
| 22917 | | > select clear |
| 22918 | | |
| 22919 | | > save "C:/Users/OJS/OneDrive - korea.ac.kr/MCSB/논문/230801_Re/MBCD/c_F30.cxs" |
| 22920 | | |
| 22921 | | > view 2 |
| 22922 | | |
| 22923 | | Expected an objects specifier or a view name or a keyword |
| 22924 | | |
| 22925 | | > view 1 |
| 22926 | | |
| 22927 | | > turn y 90 |
| 22928 | | |
| 22929 | | > hide #!4 models |
| 22930 | | |
| 22931 | | > show #!3 models |
| 22932 | | |
| 22933 | | > hide #!3 models |
| 22934 | | |
| 22935 | | > show #!3 models |
| 22936 | | |
| 22937 | | > hide #!3 models |
| 22938 | | |
| 22939 | | > show #!4 models |
| 22940 | | |
| 22941 | | > hide #!4 models |
| 22942 | | |
| 22943 | | > show #!3 models |
| 22944 | | |
| 22945 | | > hide #!9 models |
| 22946 | | |
| 22947 | | > show #!8 models |
| 22948 | | |
| 22949 | | > select #8/d |
| 22950 | | |
| 22951 | | 1953 atoms, 1996 bonds, 1 pseudobond, 206 residues, 2 models selected |
| 22952 | | |
| 22953 | | > select #8/a |
| 22954 | | |
| 22955 | | 1953 atoms, 1996 bonds, 1 pseudobond, 206 residues, 2 models selected |
| 22956 | | |
| 22957 | | > select #8/a:227 |
| 22958 | | |
| 22959 | | 9 atoms, 8 bonds, 1 residue, 1 model selected |
| 22960 | | |
| 22961 | | > show sel atoms |
| 22962 | | |
| 22963 | | > select clear |
| 22964 | | |
| 22965 | | > open "C:/Users/OJS/OneDrive - |
| 22966 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231109_N55H_MBCD10_49.pdb" |
| 22967 | | |
| 22968 | | Chain information for 231109_N55H_MBCD10_49.pdb #10 |
| 22969 | | --- |
| 22970 | | Chain | Description |
| 22971 | | A B C D E F | No description available |
| 22972 | | |
| 22973 | | |
| 22974 | | > color #10 cyan |
| 22975 | | |
| 22976 | | > select add #10 |
| 22977 | | |
| 22978 | | 11730 atoms, 11976 bonds, 6 pseudobonds, 1248 residues, 2 models selected |
| 22979 | | |
| 22980 | | > hide sel atoms |
| 22981 | | |
| 22982 | | > show sel cartoons |
| 22983 | | |
| 22984 | | > preset cartoons/nucleotides cylinders/stubs |
| 22985 | | |
| 22986 | | Using preset: Cartoons/Nucleotides / Cylinders/Stubs |
| 22987 | | Changed 9684 atom styles |
| 22988 | | Preset expands to these ChimeraX commands: |
| 22989 | | |
| 22990 | | |
| 22991 | | |
| 22992 | | show nucleic |
| 22993 | | hide protein|solvent|H |
| 22994 | | surf hide |
| 22995 | | style (protein|nucleic|solvent) & @@draw_mode=0 stick |
| 22996 | | cartoon |
| 22997 | | cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 |
| 22998 | | cartoon style ~(nucleic|strand) x round |
| 22999 | | cartoon style (nucleic|strand) x rect |
| 23000 | | cartoon style protein modeh tube rad 2 sides 24 thick 0.6 |
| 23001 | | cartoon style nucleic x round width 1.6 thick 1.6 |
| 23002 | | nucleotides stubs |
| 23003 | | |
| 23004 | | |
| 23005 | | |
| 23006 | | > hide #!10 models |
| 23007 | | |
| 23008 | | > show #!10 models |
| 23009 | | |
| 23010 | | > hide #!10 models |
| 23011 | | |
| 23012 | | > show #!10 models |
| 23013 | | |
| 23014 | | > hide #!10 models |
| 23015 | | |
| 23016 | | > show #!10 models |
| 23017 | | |
| 23018 | | > hide #!10 models |
| 23019 | | |
| 23020 | | > show #!10 models |
| 23021 | | |
| 23022 | | > hide #!10 models |
| 23023 | | |
| 23024 | | > show #!10 models |
| 23025 | | |
| 23026 | | > hide #!10 models |
| 23027 | | |
| 23028 | | > show #!10 models |
| 23029 | | |
| 23030 | | > hide #!10 models |
| 23031 | | |
| 23032 | | > close #8 |
| 23033 | | |
| 23034 | | > show #!10 models |
| 23035 | | |
| 23036 | | > rename #10 id #8 |
| 23037 | | |
| 23038 | | > ui tool show "Selection Inspector" |
| 23039 | | |
| 23040 | | > setattr =sel p display false |
| 23041 | | |
| 23042 | | Assigning display attribute to 6 items |
| 23043 | | |
| 23044 | | > size =sel stickRadius 0.3 |
| 23045 | | |
| 23046 | | Changed 11976 bond radii |
| 23047 | | |
| 23048 | | > select clear |
| 23049 | | |
| 23050 | | > view 1 |
| 23051 | | |
| 23052 | | > save "C:/Users/OJS/OneDrive - |
| 23053 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 23054 | | |
| 23055 | | > show #!7 models |
| 23056 | | |
| 23057 | | > hide #!8 models |
| 23058 | | |
| 23059 | | > view 1 |
| 23060 | | |
| 23061 | | > show #!9 models |
| 23062 | | |
| 23063 | | > hide #!7 models |
| 23064 | | |
| 23065 | | > show #!4 models |
| 23066 | | |
| 23067 | | > show #!2 models |
| 23068 | | |
| 23069 | | > show #!1 models |
| 23070 | | |
| 23071 | | > show #!6 models |
| 23072 | | |
| 23073 | | > show #!7 models |
| 23074 | | |
| 23075 | | > show #!8 models |
| 23076 | | |
| 23077 | | > view orient |
| 23078 | | |
| 23079 | | > turn x 90 |
| 23080 | | |
| 23081 | | [Repeated 2 time(s)] |
| 23082 | | |
| 23083 | | > hide #!1 models |
| 23084 | | |
| 23085 | | > hide #!2 models |
| 23086 | | |
| 23087 | | > hide #!4 models |
| 23088 | | |
| 23089 | | > hide #!3 models |
| 23090 | | |
| 23091 | | > hide #!6 models |
| 23092 | | |
| 23093 | | > hide #!8 models |
| 23094 | | |
| 23095 | | > hide #!9 models |
| 23096 | | |
| 23097 | | > hide #!7 models |
| 23098 | | |
| 23099 | | > show #!7 models |
| 23100 | | |
| 23101 | | > select #6,7,8,9/a,b,c,d,e |
| 23102 | | |
| 23103 | | 36720 atoms, 37590 bonds, 20 pseudobonds, 4080 residues, 8 models selected |
| 23104 | | |
| 23105 | | > select #6,7,8,9/a,b,c,e,f |
| 23106 | | |
| 23107 | | 36720 atoms, 37590 bonds, 20 pseudobonds, 4080 residues, 8 models selected |
| 23108 | | |
| 23109 | | > hide sel ribbons |
| 23110 | | |
| 23111 | | > hide sel atoms |
| 23112 | | |
| 23113 | | > select |
| 23114 | | > ::name="6OU"::name="CLR"::name="HOH"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 23115 | | |
| 23116 | | 10206 atoms, 10086 bonds, 270 residues, 5 models selected |
| 23117 | | |
| 23118 | | > show sel atoms |
| 23119 | | |
| 23120 | | > select #6,7,8,9/d:30 |
| 23121 | | |
| 23122 | | 44 atoms, 44 bonds, 4 residues, 4 models selected |
| 23123 | | |
| 23124 | | > show sel atoms |
| 23125 | | |
| 23126 | | > select clear |
| 23127 | | |
| 23128 | | > select #6,7,8,9/a,b,c,e,f |
| 23129 | | |
| 23130 | | 36720 atoms, 37590 bonds, 20 pseudobonds, 4080 residues, 8 models selected |
| 23131 | | |
| 23132 | | > hide sel atoms |
| 23133 | | |
| 23134 | | > select clear |
| 23135 | | |
| 23136 | | > save "C:/Users/OJS/OneDrive - korea.ac.kr/MCSB/논문/230801_Re/MBCD/c_F30.cxs" |
| 23137 | | |
| 23138 | | > hide #!7 models |
| 23139 | | |
| 23140 | | > show #!7 models |
| 23141 | | |
| 23142 | | > show #!6 models |
| 23143 | | |
| 23144 | | > hide #!7 models |
| 23145 | | |
| 23146 | | > show #!7 models |
| 23147 | | |
| 23148 | | > show #!6-7 atoms |
| 23149 | | |
| 23150 | | > view 1 |
| 23151 | | |
| 23152 | | > hide #!6-7 atoms |
| 23153 | | |
| 23154 | | > select #6,7,8,9 |
| 23155 | | |
| 23156 | | 44064 atoms, 45108 bonds, 24 pseudobonds, 4896 residues, 8 models selected |
| 23157 | | |
| 23158 | | > select #6,7,8,9/a,d |
| 23159 | | |
| 23160 | | 14688 atoms, 15036 bonds, 8 pseudobonds, 1632 residues, 8 models selected |
| 23161 | | |
| 23162 | | > show sel ribbons |
| 23163 | | |
| 23164 | | > select clear |
| 23165 | | |
| 23166 | | > select |
| 23167 | | > ::name="6OU"::name="CLR"::name="HOH"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 23168 | | |
| 23169 | | 10206 atoms, 10086 bonds, 270 residues, 5 models selected |
| 23170 | | |
| 23171 | | > show sel atoms |
| 23172 | | |
| 23173 | | > select clear |
| 23174 | | |
| 23175 | | > hide #!7 models |
| 23176 | | |
| 23177 | | > hide #!6 models |
| 23178 | | |
| 23179 | | > show #!6 models |
| 23180 | | |
| 23181 | | > hide #!6 models |
| 23182 | | |
| 23183 | | > show #!8 models |
| 23184 | | |
| 23185 | | > select ::name="HOH" |
| 23186 | | |
| 23187 | | 12 atoms, 12 residues, 1 model selected |
| 23188 | | |
| 23189 | | > color sel red |
| 23190 | | |
| 23191 | | > view 1 |
| 23192 | | |
| 23193 | | > select ::name="HOH" |
| 23194 | | |
| 23195 | | 12 atoms, 12 residues, 1 model selected |
| 23196 | | |
| 23197 | | > hide sel atoms |
| 23198 | | |
| 23199 | | > select ::name="MC3" |
| 23200 | | |
| 23201 | | 3288 atoms, 3180 bonds, 108 residues, 3 models selected |
| 23202 | | |
| 23203 | | > select ::name="6OU" |
| 23204 | | |
| 23205 | | 2940 atoms, 2880 bonds, 60 residues, 3 models selected |
| 23206 | | |
| 23207 | | > color sel orange |
| 23208 | | |
| 23209 | | > color sel byhetero |
| 23210 | | |
| 23211 | | > select #8 |
| 23212 | | |
| 23213 | | 11730 atoms, 11976 bonds, 6 pseudobonds, 1248 residues, 2 models selected |
| 23214 | | |
| 23215 | | > color sel byhetero |
| 23216 | | |
| 23217 | | > select ::name="PTY" |
| 23218 | | |
| 23219 | | 2028 atoms, 1980 bonds, 48 residues, 4 models selected |
| 23220 | | |
| 23221 | | > color sel orange |
| 23222 | | |
| 23223 | | > color sel byhetero |
| 23224 | | |
| 23225 | | > select ::name="CLR" |
| 23226 | | |
| 23227 | | 672 atoms, 744 bonds, 24 residues, 2 models selected |
| 23228 | | |
| 23229 | | > color sel yellow |
| 23230 | | |
| 23231 | | > color sel byhetero |
| 23232 | | |
| 23233 | | > select clear |
| 23234 | | |
| 23235 | | > ui tool show "Model Panel" |
| 23236 | | |
| 23237 | | > view 1 |
| 23238 | | |
| 23239 | | > save "C:/Users/OJS/OneDrive - |
| 23240 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 23241 | | |
| 23242 | | [Repeated 1 time(s)] |
| 23243 | | |
| 23244 | | > save "C:/Users/OJS/OneDrive - korea.ac.kr/MCSB/논문/230801_Re/MBCD/c_F30.cxs" |
| 23245 | | |
| 23246 | | > show #!7 models |
| 23247 | | |
| 23248 | | > hide #!7 models |
| 23249 | | |
| 23250 | | > show #!7 models |
| 23251 | | |
| 23252 | | > hide #!7 models |
| 23253 | | |
| 23254 | | > select #7,8,9/b,c,e,f |
| 23255 | | |
| 23256 | | 21604 atoms, 22160 bonds, 12 pseudobonds, 2428 residues, 6 models selected |
| 23257 | | |
| 23258 | | > hide sel atoms |
| 23259 | | |
| 23260 | | > select clear |
| 23261 | | |
| 23262 | | > save "C:/Users/OJS/OneDrive - korea.ac.kr/MCSB/논문/230801_Re/MBCD/c_F30.cxs" |
| 23263 | | |
| 23264 | | > select #7,8,9:30 |
| 23265 | | |
| 23266 | | 198 atoms, 198 bonds, 18 residues, 3 models selected |
| 23267 | | |
| 23268 | | > color sel magenta |
| 23269 | | |
| 23270 | | > select clear |
| 23271 | | |
| 23272 | | > select #7,8,9:30 |
| 23273 | | |
| 23274 | | 198 atoms, 198 bonds, 18 residues, 3 models selected |
| 23275 | | |
| 23276 | | > show sel atoms |
| 23277 | | |
| 23278 | | > select #7,8,9/b,c,e,f |
| 23279 | | |
| 23280 | | 21604 atoms, 22160 bonds, 12 pseudobonds, 2428 residues, 6 models selected |
| 23281 | | |
| 23282 | | > hide sel atoms |
| 23283 | | |
| 23284 | | > save "C:/Users/OJS/OneDrive - korea.ac.kr/MCSB/논문/230801_Re/MBCD/c_F30.cxs" |
| 23285 | | |
| 23286 | | > view 1 |
| 23287 | | |
| 23288 | | [Repeated 1 time(s)] |
| 23289 | | |
| 23290 | | > hide #!8 models |
| 23291 | | |
| 23292 | | > show #!8 models |
| 23293 | | |
| 23294 | | > hide #!8 models |
| 23295 | | |
| 23296 | | > show #!7 models |
| 23297 | | |
| 23298 | | > show #!2 models |
| 23299 | | |
| 23300 | | > hide #!2 models |
| 23301 | | |
| 23302 | | > show #!2 models |
| 23303 | | |
| 23304 | | > volume zone #2 nearAtoms #7/a:30,305 range 2.2 |
| 23305 | | |
| 23306 | | [Repeated 1 time(s)] |
| 23307 | | |
| 23308 | | > hide #!2 models |
| 23309 | | |
| 23310 | | > show #!3 models |
| 23311 | | |
| 23312 | | > hide #!7 models |
| 23313 | | |
| 23314 | | > show #!4 models |
| 23315 | | |
| 23316 | | > hide #!3 models |
| 23317 | | |
| 23318 | | > show #!9 models |
| 23319 | | |
| 23320 | | > hide #!4 models |
| 23321 | | |
| 23322 | | > show #!3 models |
| 23323 | | |
| 23324 | | > show #!8 models |
| 23325 | | |
| 23326 | | > hide #!9 models |
| 23327 | | |
| 23328 | | > hide #!3 models |
| 23329 | | |
| 23330 | | > volume zone #3 nearAtoms #8/a:30,227,306 range 2.2 |
| 23331 | | |
| 23332 | | > show #!3 models |
| 23333 | | |
| 23334 | | > select #8/a,d:227 |
| 23335 | | |
| 23336 | | 18 atoms, 16 bonds, 2 residues, 1 model selected |
| 23337 | | |
| 23338 | | > show sel atoms |
| 23339 | | |
| 23340 | | > close #8 |
| 23341 | | |
| 23342 | | > hide #!3 models |
| 23343 | | |
| 23344 | | > show #!3 models |
| 23345 | | |
| 23346 | | > show #!2 models |
| 23347 | | |
| 23348 | | > hide #!2 models |
| 23349 | | |
| 23350 | | > show #!2 models |
| 23351 | | |
| 23352 | | > hide #!3 models |
| 23353 | | |
| 23354 | | > show #!7 models |
| 23355 | | |
| 23356 | | > view 1 |
| 23357 | | |
| 23358 | | > save "C:/Users/OJS/OneDrive - |
| 23359 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 23360 | | |
| 23361 | | > view 1 |
| 23362 | | |
| 23363 | | > show #!1 models |
| 23364 | | |
| 23365 | | > hide #!1 models |
| 23366 | | |
| 23367 | | > show #!6 models |
| 23368 | | |
| 23369 | | > hide #!7 models |
| 23370 | | |
| 23371 | | > show #!7 models |
| 23372 | | |
| 23373 | | > hide #!7 models |
| 23374 | | |
| 23375 | | > show #!7 models |
| 23376 | | |
| 23377 | | > hide #!6 models |
| 23378 | | |
| 23379 | | > turn y 10 |
| 23380 | | |
| 23381 | | > turn y -10 |
| 23382 | | |
| 23383 | | [Repeated 1 time(s)] |
| 23384 | | |
| 23385 | | > turn x 90 |
| 23386 | | |
| 23387 | | > turn z 1 |
| 23388 | | |
| 23389 | | [Repeated 2 time(s)] |
| 23390 | | |
| 23391 | | > turn x 90 |
| 23392 | | |
| 23393 | | [Repeated 2 time(s)] |
| 23394 | | |
| 23395 | | > view 1 |
| 23396 | | |
| 23397 | | > turn x 90 |
| 23398 | | |
| 23399 | | > view 1 |
| 23400 | | |
| 23401 | | > select clear |
| 23402 | | |
| 23403 | | > turn z 1 |
| 23404 | | |
| 23405 | | [Repeated 2 time(s)] |
| 23406 | | |
| 23407 | | > turn z -1 |
| 23408 | | |
| 23409 | | > hide #!2 models |
| 23410 | | |
| 23411 | | > show #!2 models |
| 23412 | | |
| 23413 | | > hide #!2 models |
| 23414 | | |
| 23415 | | > show #!2 models |
| 23416 | | |
| 23417 | | > hide #!2 models |
| 23418 | | |
| 23419 | | > hide #!7 models |
| 23420 | | |
| 23421 | | > show #!2 models |
| 23422 | | |
| 23423 | | > hide #!2 models |
| 23424 | | |
| 23425 | | > show #!1 models |
| 23426 | | |
| 23427 | | > turn x 90 |
| 23428 | | |
| 23429 | | [Repeated 2 time(s)] |
| 23430 | | |
| 23431 | | > view orient |
| 23432 | | |
| 23433 | | [Repeated 2 time(s)] |
| 23434 | | |
| 23435 | | > show #!2 models |
| 23436 | | |
| 23437 | | > show #!3 models |
| 23438 | | |
| 23439 | | > show #!4 models |
| 23440 | | |
| 23441 | | > view orient |
| 23442 | | |
| 23443 | | [Repeated 3 time(s)] |
| 23444 | | |
| 23445 | | > show #!5 models |
| 23446 | | |
| 23447 | | > view orient |
| 23448 | | |
| 23449 | | [Repeated 4 time(s)] |
| 23450 | | |
| 23451 | | > hide #!4 models |
| 23452 | | |
| 23453 | | > hide #!3 models |
| 23454 | | |
| 23455 | | > hide #!2 models |
| 23456 | | |
| 23457 | | > hide #!5 models |
| 23458 | | |
| 23459 | | > show #!6 models |
| 23460 | | |
| 23461 | | > show #!7 models |
| 23462 | | |
| 23463 | | > show #!9 models |
| 23464 | | |
| 23465 | | > show #!27 models |
| 23466 | | |
| 23467 | | > hide #!1 models |
| 23468 | | |
| 23469 | | > hide #!27 models |
| 23470 | | |
| 23471 | | > view orient |
| 23472 | | |
| 23473 | | [Repeated 2 time(s)] |
| 23474 | | |
| 23475 | | > turn x 90 |
| 23476 | | |
| 23477 | | [Repeated 2 time(s)] |
| 23478 | | |
| 23479 | | > hide #!9 models |
| 23480 | | |
| 23481 | | > hide #!7 models |
| 23482 | | |
| 23483 | | > turn y 10 |
| 23484 | | |
| 23485 | | [Repeated 12 time(s)] |
| 23486 | | |
| 23487 | | > view 1 |
| 23488 | | |
| 23489 | | > hide #!6 models |
| 23490 | | |
| 23491 | | > show #!6 models |
| 23492 | | |
| 23493 | | > turn x 90 |
| 23494 | | |
| 23495 | | > turn z 1 |
| 23496 | | |
| 23497 | | > turn z -1 |
| 23498 | | |
| 23499 | | [Repeated 8 time(s)] |
| 23500 | | |
| 23501 | | > turn z 1 |
| 23502 | | |
| 23503 | | > turn x 90 |
| 23504 | | |
| 23505 | | [Repeated 2 time(s)] |
| 23506 | | |
| 23507 | | > view name 2 |
| 23508 | | |
| 23509 | | > view 1 |
| 23510 | | |
| 23511 | | > view 2 |
| 23512 | | |
| 23513 | | > view 1 |
| 23514 | | |
| 23515 | | > view 2 |
| 23516 | | |
| 23517 | | > view 1 |
| 23518 | | |
| 23519 | | > view 2 |
| 23520 | | |
| 23521 | | > view 1 |
| 23522 | | |
| 23523 | | > view name 3 |
| 23524 | | |
| 23525 | | > view 2 |
| 23526 | | |
| 23527 | | > view 3 |
| 23528 | | |
| 23529 | | > view 2 |
| 23530 | | |
| 23531 | | > view 3 |
| 23532 | | |
| 23533 | | > view 2 |
| 23534 | | |
| 23535 | | > turn x 90 |
| 23536 | | |
| 23537 | | > view 3 |
| 23538 | | |
| 23539 | | > turn x 90 |
| 23540 | | |
| 23541 | | > view 1 |
| 23542 | | |
| 23543 | | > turn x 90 |
| 23544 | | |
| 23545 | | > view orient |
| 23546 | | |
| 23547 | | [Repeated 6 time(s)] |
| 23548 | | |
| 23549 | | > view 1 |
| 23550 | | |
| 23551 | | > hide #!6 models |
| 23552 | | |
| 23553 | | > show #!7 models |
| 23554 | | |
| 23555 | | > open "C:/Users/OJS/OneDrive - |
| 23556 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231109_N55H_MBCD10_52.pdb" |
| 23557 | | |
| 23558 | | Chain information for 231109_N55H_MBCD10_52.pdb #8 |
| 23559 | | --- |
| 23560 | | Chain | Description |
| 23561 | | A B C D E F | No description available |
| 23562 | | |
| 23563 | | |
| 23564 | | > color #8 cyan |
| 23565 | | |
| 23566 | | > hide #!7-8 atoms |
| 23567 | | |
| 23568 | | > show #!7-8 cartoons |
| 23569 | | |
| 23570 | | > preset cartoons/nucleotides licorice/ovals |
| 23571 | | |
| 23572 | | Using preset: Cartoons/Nucleotides / Licorice/Ovals |
| 23573 | | Changed 9684 atom styles |
| 23574 | | Preset expands to these ChimeraX commands: |
| 23575 | | |
| 23576 | | |
| 23577 | | |
| 23578 | | show nucleic |
| 23579 | | hide protein|solvent|H |
| 23580 | | surf hide |
| 23581 | | style (protein|nucleic|solvent) & @@draw_mode=0 stick |
| 23582 | | cartoon |
| 23583 | | cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 |
| 23584 | | cartoon style ~(nucleic|strand) x round |
| 23585 | | cartoon style (nucleic|strand) x rect |
| 23586 | | cartoon style protein modeh default arrows f x round width 1 thick 1 |
| 23587 | | cartoon style nucleic x round width 1.6 thick 1.6 |
| 23588 | | nucleotides tube/slab shape ellipsoid |
| 23589 | | |
| 23590 | | |
| 23591 | | |
| 23592 | | > preset cartoons/nucleotides cylinders/stubs |
| 23593 | | |
| 23594 | | Using preset: Cartoons/Nucleotides / Cylinders/Stubs |
| 23595 | | Changed 0 atom styles |
| 23596 | | Preset expands to these ChimeraX commands: |
| 23597 | | |
| 23598 | | |
| 23599 | | |
| 23600 | | show nucleic |
| 23601 | | hide protein|solvent|H |
| 23602 | | surf hide |
| 23603 | | style (protein|nucleic|solvent) & @@draw_mode=0 stick |
| 23604 | | cartoon |
| 23605 | | cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 |
| 23606 | | cartoon style ~(nucleic|strand) x round |
| 23607 | | cartoon style (nucleic|strand) x rect |
| 23608 | | cartoon style protein modeh tube rad 2 sides 24 thick 0.6 |
| 23609 | | cartoon style nucleic x round width 1.6 thick 1.6 |
| 23610 | | nucleotides stubs |
| 23611 | | |
| 23612 | | |
| 23613 | | |
| 23614 | | > select clear |
| 23615 | | |
| 23616 | | > select add #8 |
| 23617 | | |
| 23618 | | 11718 atoms, 11976 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 23619 | | |
| 23620 | | > ui tool show "Selection Inspector" |
| 23621 | | |
| 23622 | | > setattr =sel p display false |
| 23623 | | |
| 23624 | | Assigning display attribute to 6 items |
| 23625 | | |
| 23626 | | > size =sel stickRadius 0.3 |
| 23627 | | |
| 23628 | | Changed 11976 bond radii |
| 23629 | | |
| 23630 | | > hide #!8 models |
| 23631 | | |
| 23632 | | > hide #!7 models |
| 23633 | | |
| 23634 | | > show #!7 models |
| 23635 | | |
| 23636 | | > show #!8 models |
| 23637 | | |
| 23638 | | > select clear |
| 23639 | | |
| 23640 | | > hide #!7 models |
| 23641 | | |
| 23642 | | > select ::name="6OU" |
| 23643 | | |
| 23644 | | 2940 atoms, 2880 bonds, 60 residues, 3 models selected |
| 23645 | | |
| 23646 | | > color sel orange |
| 23647 | | |
| 23648 | | > select ::name="CLR" |
| 23649 | | |
| 23650 | | 672 atoms, 744 bonds, 24 residues, 2 models selected |
| 23651 | | |
| 23652 | | > color sel yellow |
| 23653 | | |
| 23654 | | > select ::name="PTY" |
| 23655 | | |
| 23656 | | 2028 atoms, 1980 bonds, 48 residues, 4 models selected |
| 23657 | | |
| 23658 | | > color sel orange |
| 23659 | | |
| 23660 | | > select |
| 23661 | | |
| 23662 | | 68190 atoms, 69480 bonds, 30 pseudobonds, 6168 residues, 20 models selected |
| 23663 | | |
| 23664 | | > color sel byhetero |
| 23665 | | |
| 23666 | | > select #8 |
| 23667 | | |
| 23668 | | 11718 atoms, 11976 bonds, 6 pseudobonds, 1236 residues, 2 models selected |
| 23669 | | |
| 23670 | | > style sel stick |
| 23671 | | |
| 23672 | | Changed 11718 atom styles |
| 23673 | | |
| 23674 | | > select clear |
| 23675 | | |
| 23676 | | > ui tool show "Fit in Map" |
| 23677 | | |
| 23678 | | > fitmap #8 inMap #3 |
| 23679 | | |
| 23680 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 23681 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 23682 | | average map value = 0.5192, steps = 36 |
| 23683 | | shifted from previous position = 0.00599 |
| 23684 | | rotated from previous position = 0.00869 degrees |
| 23685 | | atoms outside contour = 1479, contour level = 0.1679 |
| 23686 | | |
| 23687 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 23688 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 23689 | | Matrix rotation and translation |
| 23690 | | 0.99999999 -0.00013403 0.00001380 0.01643959 |
| 23691 | | 0.00013403 0.99999999 -0.00006972 -0.00243968 |
| 23692 | | -0.00001379 0.00006972 1.00000000 -0.00600491 |
| 23693 | | Axis 0.45955465 0.09094620 0.88348079 |
| 23694 | | Axis point 19.58852543 115.70431409 0.00000000 |
| 23695 | | Rotation angle (degrees) 0.00869201 |
| 23696 | | Shift along axis 0.00202779 |
| 23697 | | |
| 23698 | | |
| 23699 | | > fitmap #8 inMap #3 |
| 23700 | | |
| 23701 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 23702 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 23703 | | average map value = 0.5192, steps = 24 |
| 23704 | | shifted from previous position = 0.00605 |
| 23705 | | rotated from previous position = 0.00409 degrees |
| 23706 | | atoms outside contour = 1484, contour level = 0.1679 |
| 23707 | | |
| 23708 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 23709 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 23710 | | Matrix rotation and translation |
| 23711 | | 0.99999999 -0.00012403 0.00008097 -0.00036396 |
| 23712 | | 0.00012403 0.99999999 -0.00004795 -0.00567708 |
| 23713 | | -0.00008096 0.00004796 1.00000000 0.00664741 |
| 23714 | | Axis 0.30801939 0.52004570 0.79666588 |
| 23715 | | Axis point 55.12496475 -8.48062774 0.00000000 |
| 23716 | | Rotation angle (degrees) 0.00892034 |
| 23717 | | Shift along axis 0.00223132 |
| 23718 | | |
| 23719 | | |
| 23720 | | > fitmap #8 inMap #3 |
| 23721 | | |
| 23722 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 23723 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 23724 | | average map value = 0.5192, steps = 24 |
| 23725 | | shifted from previous position = 0.00645 |
| 23726 | | rotated from previous position = 0.00454 degrees |
| 23727 | | atoms outside contour = 1478, contour level = 0.1679 |
| 23728 | | |
| 23729 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 23730 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 23731 | | Matrix rotation and translation |
| 23732 | | 0.99999999 -0.00012747 0.00010201 -0.00502389 |
| 23733 | | 0.00012747 0.99999999 0.00002828 -0.02314497 |
| 23734 | | -0.00010201 -0.00002827 0.99999999 0.01979076 |
| 23735 | | Axis -0.17063233 0.61564565 0.76932766 |
| 23736 | | Axis point 190.42711939 -36.97704378 0.00000000 |
| 23737 | | Rotation angle (degrees) 0.00949339 |
| 23738 | | Shift along axis 0.00183371 |
| 23739 | | |
| 23740 | | |
| 23741 | | > fitmap #8 inMap #3 |
| 23742 | | |
| 23743 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 23744 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 23745 | | average map value = 0.5192, steps = 24 |
| 23746 | | shifted from previous position = 0.00178 |
| 23747 | | rotated from previous position = 0.00118 degrees |
| 23748 | | atoms outside contour = 1477, contour level = 0.1679 |
| 23749 | | |
| 23750 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 23751 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 23752 | | Matrix rotation and translation |
| 23753 | | 0.99999999 -0.00012766 0.00009664 -0.00370260 |
| 23754 | | 0.00012766 0.99999999 0.00004820 -0.02771583 |
| 23755 | | -0.00009665 -0.00004819 0.99999999 0.02171490 |
| 23756 | | Axis -0.28820347 0.57799200 0.76345531 |
| 23757 | | Axis point 224.47142815 -25.35513328 0.00000000 |
| 23758 | | Rotation angle (degrees) 0.00958058 |
| 23759 | | Shift along axis 0.00162593 |
| 23760 | | |
| 23761 | | |
| 23762 | | > show #!7 models |
| 23763 | | |
| 23764 | | > hide #!7 models |
| 23765 | | |
| 23766 | | > fitmap #8 inMap #3 |
| 23767 | | |
| 23768 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 23769 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 23770 | | average map value = 0.5192, steps = 24 |
| 23771 | | shifted from previous position = 0.00097 |
| 23772 | | rotated from previous position = 0.00061 degrees |
| 23773 | | atoms outside contour = 1476, contour level = 0.1679 |
| 23774 | | |
| 23775 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 23776 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 23777 | | Matrix rotation and translation |
| 23778 | | 0.99999999 -0.00012720 0.00009194 -0.00265577 |
| 23779 | | 0.00012719 0.99999999 0.00005773 -0.02988222 |
| 23780 | | -0.00009194 -0.00005772 0.99999999 0.02240136 |
| 23781 | | Axis -0.34520647 0.54979793 0.76062786 |
| 23782 | | Axis point 241.53609750 -16.75914610 0.00000000 |
| 23783 | | Rotation angle (degrees) 0.00958118 |
| 23784 | | Shift along axis 0.00152670 |
| 23785 | | |
| 23786 | | |
| 23787 | | > fitmap #8 inMap #3 |
| 23788 | | |
| 23789 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 23790 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 23791 | | average map value = 0.5192, steps = 24 |
| 23792 | | shifted from previous position = 0.000903 |
| 23793 | | rotated from previous position = 0.000568 degrees |
| 23794 | | atoms outside contour = 1474, contour level = 0.1679 |
| 23795 | | |
| 23796 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 23797 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 23798 | | Matrix rotation and translation |
| 23799 | | 0.99999999 -0.00012697 0.00008713 -0.00153069 |
| 23800 | | 0.00012696 0.99999999 0.00006639 -0.03186105 |
| 23801 | | -0.00008714 -0.00006638 0.99999999 0.02292445 |
| 23802 | | Axis -0.39589018 0.51962851 0.75713749 |
| 23803 | | Axis point 256.71218612 -7.69262556 0.00000000 |
| 23804 | | Rotation angle (degrees) 0.00960780 |
| 23805 | | Shift along axis 0.00140704 |
| 23806 | | |
| 23807 | | |
| 23808 | | > select clear |
| 23809 | | |
| 23810 | | > view 1 |
| 23811 | | |
| 23812 | | > select #8/b,c,e,f |
| 23813 | | |
| 23814 | | 7812 atoms, 7984 bonds, 4 pseudobonds, 824 residues, 2 models selected |
| 23815 | | |
| 23816 | | > hide sel ribbons |
| 23817 | | |
| 23818 | | > select clear |
| 23819 | | |
| 23820 | | > turn y 1 |
| 23821 | | |
| 23822 | | [Repeated 156 time(s)] |
| 23823 | | |
| 23824 | | > view 1 |
| 23825 | | |
| 23826 | | > turn y -1 |
| 23827 | | |
| 23828 | | [Repeated 25 time(s)] |
| 23829 | | |
| 23830 | | > view name 1 |
| 23831 | | |
| 23832 | | > show #!9 models |
| 23833 | | |
| 23834 | | > hide #!9 models |
| 23835 | | |
| 23836 | | > save "C:/Users/OJS/OneDrive - |
| 23837 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 23838 | | |
| 23839 | | > hide #!8 models |
| 23840 | | |
| 23841 | | > show #!6 models |
| 23842 | | |
| 23843 | | > select #6,7,8,9 |
| 23844 | | |
| 23845 | | 44052 atoms, 45108 bonds, 24 pseudobonds, 4884 residues, 8 models selected |
| 23846 | | |
| 23847 | | > select #6,7,8,9/b,c,e,f |
| 23848 | | |
| 23849 | | 29368 atoms, 30072 bonds, 16 pseudobonds, 3256 residues, 8 models selected |
| 23850 | | |
| 23851 | | > hide sel ribbons |
| 23852 | | |
| 23853 | | > hide sel atoms |
| 23854 | | |
| 23855 | | > save "C:/Users/OJS/OneDrive - |
| 23856 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 23857 | | |
| 23858 | | > select add #6 |
| 23859 | | |
| 23860 | | 33254 atoms, 34028 bonds, 18 pseudobonds, 3674 residues, 8 models selected |
| 23861 | | |
| 23862 | | > select add #8 |
| 23863 | | |
| 23864 | | 37160 atoms, 38020 bonds, 20 pseudobonds, 4086 residues, 8 models selected |
| 23865 | | |
| 23866 | | > select add #7 |
| 23867 | | |
| 23868 | | 40664 atoms, 41632 bonds, 22 pseudobonds, 4482 residues, 8 models selected |
| 23869 | | |
| 23870 | | > show #!8 models |
| 23871 | | |
| 23872 | | > hide #!6 models |
| 23873 | | |
| 23874 | | > select |
| 23875 | | > ::name="6OU"::name="CLR"::name="MC3"::name="PIO"::name="PTY"::name="Y01" |
| 23876 | | |
| 23877 | | 10194 atoms, 10086 bonds, 258 residues, 5 models selected |
| 23878 | | |
| 23879 | | > show sel atoms |
| 23880 | | |
| 23881 | | > select #6,7,8,9 |
| 23882 | | |
| 23883 | | 44052 atoms, 45108 bonds, 24 pseudobonds, 4884 residues, 8 models selected |
| 23884 | | |
| 23885 | | > select #6,7,8,9/b,c,e,f |
| 23886 | | |
| 23887 | | 29368 atoms, 30072 bonds, 16 pseudobonds, 3256 residues, 8 models selected |
| 23888 | | |
| 23889 | | > hide sel atoms |
| 23890 | | |
| 23891 | | > save "C:/Users/OJS/OneDrive - |
| 23892 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 23893 | | |
| 23894 | | > hide #!8 models |
| 23895 | | |
| 23896 | | > show #!8 models |
| 23897 | | |
| 23898 | | > hide #!8 models |
| 23899 | | |
| 23900 | | > show #!8 models |
| 23901 | | |
| 23902 | | > show #!7 models |
| 23903 | | |
| 23904 | | > show #!6 models |
| 23905 | | |
| 23906 | | > show #!9 models |
| 23907 | | |
| 23908 | | > view name 1 |
| 23909 | | |
| 23910 | | > save "C:/Users/OJS/OneDrive - |
| 23911 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 23912 | | |
| 23913 | | > hide #!9 models |
| 23914 | | |
| 23915 | | > hide #!8 models |
| 23916 | | |
| 23917 | | > hide #!7 models |
| 23918 | | |
| 23919 | | > turn x 90 |
| 23920 | | |
| 23921 | | [Repeated 3 time(s)] |
| 23922 | | |
| 23923 | | > turn y 1 |
| 23924 | | |
| 23925 | | > turn y -1 |
| 23926 | | |
| 23927 | | [Repeated 2 time(s)] |
| 23928 | | |
| 23929 | | > turn y 3 |
| 23930 | | |
| 23931 | | > view 1 |
| 23932 | | |
| 23933 | | > save "C:/Users/OJS/OneDrive - |
| 23934 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 23935 | | |
| 23936 | | > view name 1 |
| 23937 | | |
| 23938 | | > hide #!6 models |
| 23939 | | |
| 23940 | | > show #!1 models |
| 23941 | | |
| 23942 | | > hide #!1 models |
| 23943 | | |
| 23944 | | > show #!2 models |
| 23945 | | |
| 23946 | | > hide #!2 models |
| 23947 | | |
| 23948 | | > show #!3 models |
| 23949 | | |
| 23950 | | > hide #!3 models |
| 23951 | | |
| 23952 | | > show #!6 models |
| 23953 | | |
| 23954 | | > show #!7 models |
| 23955 | | |
| 23956 | | > hide #!6 models |
| 23957 | | |
| 23958 | | > show #!9 models |
| 23959 | | |
| 23960 | | > show #!6 models |
| 23961 | | |
| 23962 | | > view orient |
| 23963 | | |
| 23964 | | > turn x 90 |
| 23965 | | |
| 23966 | | > turn y 10 |
| 23967 | | |
| 23968 | | [Repeated 5 time(s)] |
| 23969 | | |
| 23970 | | > turn x 90 |
| 23971 | | |
| 23972 | | [Repeated 1 time(s)] |
| 23973 | | |
| 23974 | | > select clear |
| 23975 | | |
| 23976 | | > hide #!7 models |
| 23977 | | |
| 23978 | | > hide #!6 models |
| 23979 | | |
| 23980 | | > show #!7 models |
| 23981 | | |
| 23982 | | > hide #!9 models |
| 23983 | | |
| 23984 | | > show #!6 models |
| 23985 | | |
| 23986 | | > hide #!7 models |
| 23987 | | |
| 23988 | | > view name 1 |
| 23989 | | |
| 23990 | | > hide #!6 models |
| 23991 | | |
| 23992 | | > show #!7 models |
| 23993 | | |
| 23994 | | > hide #!7 models |
| 23995 | | |
| 23996 | | > show #!8 models |
| 23997 | | |
| 23998 | | > hide #!8 models |
| 23999 | | |
| 24000 | | > show #!9 models |
| 24001 | | |
| 24002 | | > show #!8 models |
| 24003 | | |
| 24004 | | > hide #!9 models |
| 24005 | | |
| 24006 | | > hide #!8 models |
| 24007 | | |
| 24008 | | > show #!8 models |
| 24009 | | |
| 24010 | | > show #!9 models |
| 24011 | | |
| 24012 | | > hide #!8 models |
| 24013 | | |
| 24014 | | > save "C:/Users/OJS/OneDrive - |
| 24015 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 24016 | | |
| 24017 | | > show #!8 models |
| 24018 | | |
| 24019 | | > hide #!9 models |
| 24020 | | |
| 24021 | | > show #!7 models |
| 24022 | | |
| 24023 | | > hide #!8 models |
| 24024 | | |
| 24025 | | > show #!6 models |
| 24026 | | |
| 24027 | | > hide #!7 models |
| 24028 | | |
| 24029 | | > hide #!6 models |
| 24030 | | |
| 24031 | | > show #!7 models |
| 24032 | | |
| 24033 | | > show #!8 models |
| 24034 | | |
| 24035 | | > hide #!8 models |
| 24036 | | |
| 24037 | | > show #!8 models |
| 24038 | | |
| 24039 | | > hide #!8 models |
| 24040 | | |
| 24041 | | > show #!8 models |
| 24042 | | |
| 24043 | | > hide #!8 models |
| 24044 | | |
| 24045 | | > turn x 90 |
| 24046 | | |
| 24047 | | > turn z 10 |
| 24048 | | |
| 24049 | | > turn x 90 |
| 24050 | | |
| 24051 | | [Repeated 2 time(s)] |
| 24052 | | |
| 24053 | | > view 1 |
| 24054 | | |
| 24055 | | > view 2 |
| 24056 | | |
| 24057 | | > view 1 |
| 24058 | | |
| 24059 | | > show #!1 models |
| 24060 | | |
| 24061 | | > hide #!7 models |
| 24062 | | |
| 24063 | | > show #!6 models |
| 24064 | | |
| 24065 | | > fitmap #6 inMap #1 |
| 24066 | | |
| 24067 | | Fit molecule 231109_WT_PIP2_109.pdb (#6) to map |
| 24068 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 24069 | | average map value = 0.3534, steps = 24 |
| 24070 | | shifted from previous position = 0.00141 |
| 24071 | | rotated from previous position = 0.00355 degrees |
| 24072 | | atoms outside contour = 2345, contour level = 0.16402 |
| 24073 | | |
| 24074 | | Position of 231109_WT_PIP2_109.pdb (#6) relative to |
| 24075 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24076 | | Matrix rotation and translation |
| 24077 | | -0.49988470 -0.86609194 0.00015450 401.24999334 |
| 24078 | | 0.86609195 -0.49988471 -0.00003153 107.49548405 |
| 24079 | | 0.00010454 0.00011805 0.99999998 -0.04210626 |
| 24080 | | Axis 0.00008635 0.00002884 1.00000000 |
| 24081 | | Axis point 169.58895505 169.59644392 0.00000000 |
| 24082 | | Rotation angle (degrees) 119.99237305 |
| 24083 | | Shift along axis -0.00435630 |
| 24084 | | |
| 24085 | | |
| 24086 | | > fitmap #6 inMap #1 |
| 24087 | | |
| 24088 | | Fit molecule 231109_WT_PIP2_109.pdb (#6) to map |
| 24089 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 24090 | | average map value = 0.3534, steps = 24 |
| 24091 | | shifted from previous position = 0.000958 |
| 24092 | | rotated from previous position = 0.00131 degrees |
| 24093 | | atoms outside contour = 2345, contour level = 0.16402 |
| 24094 | | |
| 24095 | | Position of 231109_WT_PIP2_109.pdb (#6) relative to |
| 24096 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24097 | | Matrix rotation and translation |
| 24098 | | -0.49989583 -0.86608551 0.00017315 401.24856324 |
| 24099 | | 0.86608552 -0.49989584 -0.00002849 107.49805669 |
| 24100 | | 0.00011123 0.00013572 0.99999998 -0.04619046 |
| 24101 | | Axis 0.00009480 0.00003575 0.99999999 |
| 24102 | | Axis point 169.58795831 169.59559787 0.00000000 |
| 24103 | | Rotation angle (degrees) 119.99310973 |
| 24104 | | Shift along axis -0.00431031 |
| 24105 | | |
| 24106 | | |
| 24107 | | > fitmap #6 inMap #1 |
| 24108 | | |
| 24109 | | Fit molecule 231109_WT_PIP2_109.pdb (#6) to map |
| 24110 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 24111 | | average map value = 0.3534, steps = 24 |
| 24112 | | shifted from previous position = 0.000242 |
| 24113 | | rotated from previous position = 0.0013 degrees |
| 24114 | | atoms outside contour = 2345, contour level = 0.16402 |
| 24115 | | |
| 24116 | | Position of 231109_WT_PIP2_109.pdb (#6) relative to |
| 24117 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24118 | | Matrix rotation and translation |
| 24119 | | -0.49989858 -0.86608392 0.00019517 401.24523516 |
| 24120 | | 0.86608394 -0.49989859 -0.00003276 107.49944636 |
| 24121 | | 0.00012594 0.00015265 0.99999997 -0.05157584 |
| 24122 | | Axis 0.00010704 0.00003997 0.99999999 |
| 24123 | | Axis point 169.58600734 169.59490757 0.00000000 |
| 24124 | | Rotation angle (degrees) 119.99329163 |
| 24125 | | Shift along axis -0.00432936 |
| 24126 | | |
| 24127 | | |
| 24128 | | > fitmap #6 inMap #1 |
| 24129 | | |
| 24130 | | Fit molecule 231109_WT_PIP2_109.pdb (#6) to map |
| 24131 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 24132 | | average map value = 0.3534, steps = 24 |
| 24133 | | shifted from previous position = 0.000324 |
| 24134 | | rotated from previous position = 0.00132 degrees |
| 24135 | | atoms outside contour = 2345, contour level = 0.16402 |
| 24136 | | |
| 24137 | | Position of 231109_WT_PIP2_109.pdb (#6) relative to |
| 24138 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24139 | | Matrix rotation and translation |
| 24140 | | -0.49989845 -0.86608399 0.00021796 401.24165959 |
| 24141 | | 0.86608401 -0.49989847 -0.00003651 107.50000939 |
| 24142 | | 0.00014058 0.00017052 0.99999997 -0.05705838 |
| 24143 | | Axis 0.00011952 0.00004467 0.99999999 |
| 24144 | | Axis point 169.58405263 169.59417576 0.00000000 |
| 24145 | | Rotation angle (degrees) 119.99328369 |
| 24146 | | Shift along axis -0.00429959 |
| 24147 | | |
| 24148 | | |
| 24149 | | > fitmap #6 inMap #1 |
| 24150 | | |
| 24151 | | Fit molecule 231109_WT_PIP2_109.pdb (#6) to map |
| 24152 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 24153 | | average map value = 0.3534, steps = 24 |
| 24154 | | shifted from previous position = 0.000138 |
| 24155 | | rotated from previous position = 0.00139 degrees |
| 24156 | | atoms outside contour = 2348, contour level = 0.16402 |
| 24157 | | |
| 24158 | | Position of 231109_WT_PIP2_109.pdb (#6) relative to |
| 24159 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24160 | | Matrix rotation and translation |
| 24161 | | -0.49989523 -0.86608584 0.00024149 401.23754192 |
| 24162 | | 0.86608586 -0.49989525 -0.00004142 107.49993442 |
| 24163 | | 0.00015660 0.00018845 0.99999996 -0.06283297 |
| 24164 | | Axis 0.00013271 0.00004901 0.99999999 |
| 24165 | | Axis point 169.58188294 169.59344707 0.00000000 |
| 24166 | | Rotation angle (degrees) 119.99307074 |
| 24167 | | Shift along axis -0.00431744 |
| 24168 | | |
| 24169 | | |
| 24170 | | > fitmap #6 inMap #1 |
| 24171 | | |
| 24172 | | Fit molecule 231109_WT_PIP2_109.pdb (#6) to map |
| 24173 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 24174 | | average map value = 0.3534, steps = 24 |
| 24175 | | shifted from previous position = 0.00023 |
| 24176 | | rotated from previous position = 0.00161 degrees |
| 24177 | | atoms outside contour = 2346, contour level = 0.16402 |
| 24178 | | |
| 24179 | | Position of 231109_WT_PIP2_109.pdb (#6) relative to |
| 24180 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24181 | | Matrix rotation and translation |
| 24182 | | -0.49988537 -0.86609152 0.00026722 401.23266934 |
| 24183 | | 0.86609155 -0.49988540 -0.00004261 107.49755502 |
| 24184 | | 0.00017048 0.00021014 0.99999996 -0.06889645 |
| 24185 | | Axis 0.00014591 0.00005585 0.99999999 |
| 24186 | | Axis point 169.57972683 169.59237252 0.00000000 |
| 24187 | | Rotation angle (degrees) 119.99241907 |
| 24188 | | Shift along axis -0.00434834 |
| 24189 | | |
| 24190 | | |
| 24191 | | > fitmap #6 inMap #1 |
| 24192 | | |
| 24193 | | Fit molecule 231109_WT_PIP2_109.pdb (#6) to map |
| 24194 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 24195 | | average map value = 0.3534, steps = 24 |
| 24196 | | shifted from previous position = 0.000371 |
| 24197 | | rotated from previous position = 0.0025 degrees |
| 24198 | | atoms outside contour = 2349, contour level = 0.16402 |
| 24199 | | |
| 24200 | | Position of 231109_WT_PIP2_109.pdb (#6) relative to |
| 24201 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24202 | | Matrix rotation and translation |
| 24203 | | -0.49985838 -0.86610709 0.00029744 401.22594907 |
| 24204 | | 0.86610713 -0.49985841 -0.00004634 107.49093485 |
| 24205 | | 0.00018881 0.00023445 0.99999995 -0.07611221 |
| 24206 | | Axis 0.00016210 0.00006271 0.99999998 |
| 24207 | | Axis point 169.57716254 169.59129070 0.00000000 |
| 24208 | | Rotation angle (degrees) 119.99063375 |
| 24209 | | Shift along axis -0.00433253 |
| 24210 | | |
| 24211 | | |
| 24212 | | > fitmap #6 inMap #1 |
| 24213 | | |
| 24214 | | Fit molecule 231109_WT_PIP2_109.pdb (#6) to map |
| 24215 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) using 11658 atoms |
| 24216 | | average map value = 0.3534, steps = 24 |
| 24217 | | shifted from previous position = 0.000249 |
| 24218 | | rotated from previous position = 0.0115 degrees |
| 24219 | | atoms outside contour = 2345, contour level = 0.16402 |
| 24220 | | |
| 24221 | | Position of 231109_WT_PIP2_109.pdb (#6) relative to |
| 24222 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24223 | | Matrix rotation and translation |
| 24224 | | -0.49968995 -0.86620429 0.00025086 401.22205217 |
| 24225 | | 0.86620432 -0.49968997 -0.00003279 107.44352132 |
| 24226 | | 0.00015376 0.00020091 0.99999996 -0.06447214 |
| 24227 | | Axis 0.00013490 0.00005605 0.99999999 |
| 24228 | | Axis point 169.58193617 169.59247030 0.00000000 |
| 24229 | | Rotation angle (degrees) 119.97949137 |
| 24230 | | Shift along axis -0.00432436 |
| 24231 | | |
| 24232 | | |
| 24233 | | > hide #!1 models |
| 24234 | | |
| 24235 | | > show #!1 models |
| 24236 | | |
| 24237 | | > hide #!6 models |
| 24238 | | |
| 24239 | | > show #!2 models |
| 24240 | | |
| 24241 | | > hide #!1 models |
| 24242 | | |
| 24243 | | > hide #!2 models |
| 24244 | | |
| 24245 | | > show #!2 models |
| 24246 | | |
| 24247 | | > fitmap #2 inMap #1 |
| 24248 | | |
| 24249 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 24250 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 24251 | | correlation = 0.8523, correlation about mean = 0.7042, overlap = 1.013e+04 |
| 24252 | | steps = 28, shift = 0.0178, angle = 4.97e-05 degrees |
| 24253 | | |
| 24254 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 24255 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24256 | | Matrix rotation and translation |
| 24257 | | -0.98734238 0.15860331 0.00001034 307.16792534 |
| 24258 | | 0.15860331 0.98734238 -0.00006130 -20.60698729 |
| 24259 | | -0.00001993 -0.00005889 -1.00000000 339.20014011 |
| 24260 | | Axis 0.07956057 0.99683003 -0.00002609 |
| 24261 | | Axis point 154.40761331 0.00000000 169.59863167 |
| 24262 | | Rotation angle (degrees) 179.99912986 |
| 24263 | | Shift along axis 3.88794379 |
| 24264 | | |
| 24265 | | |
| 24266 | | > fitmap #2 inMap #1 |
| 24267 | | |
| 24268 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 24269 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 24270 | | correlation = 0.8523, correlation about mean = 0.7042, overlap = 1.013e+04 |
| 24271 | | steps = 28, shift = 0.018, angle = 3.13e-05 degrees |
| 24272 | | |
| 24273 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 24274 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24275 | | Matrix rotation and translation |
| 24276 | | -0.98734234 0.15860359 0.00001079 307.16963607 |
| 24277 | | 0.15860359 0.98734234 -0.00006117 -20.62500257 |
| 24278 | | -0.00002035 -0.00005868 -1.00000000 339.20012561 |
| 24279 | | Axis 0.07956053 0.99683004 -0.00002611 |
| 24280 | | Axis point 154.40922394 0.00000000 169.59859059 |
| 24281 | | Rotation angle (degrees) 179.99910507 |
| 24282 | | Shift along axis 3.87009853 |
| 24283 | | |
| 24284 | | |
| 24285 | | > fitmap #2 inMap #1 |
| 24286 | | |
| 24287 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 24288 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 24289 | | correlation = 0.8523, correlation about mean = 0.7042, overlap = 1.013e+04 |
| 24290 | | steps = 28, shift = 0.0181, angle = 3.86e-05 degrees |
| 24291 | | |
| 24292 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 24293 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24294 | | Matrix rotation and translation |
| 24295 | | -0.98734239 0.15860329 0.00001020 307.16797982 |
| 24296 | | 0.15860329 0.98734239 -0.00006128 -20.60696427 |
| 24297 | | -0.00001979 -0.00005889 -1.00000000 339.20014738 |
| 24298 | | Axis 0.07956063 0.99683003 -0.00002604 |
| 24299 | | Axis point 154.40762777 0.00000000 169.59864701 |
| 24300 | | Rotation angle (degrees) 179.99913825 |
| 24301 | | Shift along axis 3.88800315 |
| 24302 | | |
| 24303 | | |
| 24304 | | > fitmap #2 inMap #1 |
| 24305 | | |
| 24306 | | Fit map N55H_Chol_P52_J694_007_volume_map_sharp.mrc in map |
| 24307 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 271891 points |
| 24308 | | correlation = 0.8523, correlation about mean = 0.7042, overlap = 1.013e+04 |
| 24309 | | steps = 28, shift = 0.0179, angle = 4.7e-05 degrees |
| 24310 | | |
| 24311 | | Position of N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) relative to |
| 24312 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24313 | | Matrix rotation and translation |
| 24314 | | -0.98734235 0.15860351 0.00001097 307.16963007 |
| 24315 | | 0.15860351 0.98734235 -0.00006112 -20.62482499 |
| 24316 | | -0.00002052 -0.00005861 -1.00000000 339.20016084 |
| 24317 | | Axis 0.07956041 0.99683005 -0.00002613 |
| 24318 | | Axis point 154.40922767 0.00000000 169.59859451 |
| 24319 | | Rotation angle (degrees) 179.99909497 |
| 24320 | | Shift along axis 3.87023557 |
| 24321 | | |
| 24322 | | |
| 24323 | | > hide #!2 models |
| 24324 | | |
| 24325 | | > show #!3 models |
| 24326 | | |
| 24327 | | > show #!2 models |
| 24328 | | |
| 24329 | | > hide #!2 models |
| 24330 | | |
| 24331 | | > fitmap #3 inMap #1 |
| 24332 | | |
| 24333 | | Fit map N55H_MBCD_P74_J90_011_volume_map_sharp.mrc in map |
| 24334 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 140403 points |
| 24335 | | correlation = 0.9043, correlation about mean = 0.7568, overlap = 2.036e+04 |
| 24336 | | steps = 28, shift = 0.0163, angle = 0.0184 degrees |
| 24337 | | |
| 24338 | | Position of N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) relative to |
| 24339 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24340 | | Matrix rotation and translation |
| 24341 | | -0.99998844 0.00480713 0.00002027 304.62121878 |
| 24342 | | 0.00480713 0.99998844 -0.00001914 33.27435494 |
| 24343 | | -0.00002036 -0.00001904 -1.00000000 314.58917128 |
| 24344 | | Axis 0.00240930 0.99999710 -0.00000841 |
| 24345 | | Axis point 152.27212323 0.00000000 157.29317872 |
| 24346 | | Rotation angle (degrees) 179.99883586 |
| 24347 | | Shift along axis 34.00553625 |
| 24348 | | |
| 24349 | | |
| 24350 | | > hide #!3 models |
| 24351 | | |
| 24352 | | > show #!3 models |
| 24353 | | |
| 24354 | | > hide #!3 models |
| 24355 | | |
| 24356 | | > show #!3 models |
| 24357 | | |
| 24358 | | > hide #!3 models |
| 24359 | | |
| 24360 | | > show #!4 models |
| 24361 | | |
| 24362 | | > hide #!4 models |
| 24363 | | |
| 24364 | | > show #!5 models |
| 24365 | | |
| 24366 | | > fitmap #5 inMap #1 |
| 24367 | | |
| 24368 | | Fit map N55H_CBX_P52_J662_003_volume_map_sharp.mrc in map |
| 24369 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 125306 points |
| 24370 | | correlation = 0.6267, correlation about mean = 0.2509, overlap = 3741 |
| 24371 | | steps = 52, shift = 0.276, angle = 0.0835 degrees |
| 24372 | | |
| 24373 | | Position of N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) relative to |
| 24374 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24375 | | Matrix rotation and translation |
| 24376 | | 0.24505586 -0.96950895 0.00011868 289.85316834 |
| 24377 | | 0.96950895 0.24505586 0.00005219 -32.01759960 |
| 24378 | | -0.00007969 0.00010227 0.99999999 8.35986617 |
| 24379 | | Axis 0.00002583 0.00010230 0.99999999 |
| 24380 | | Axis point 165.48573196 170.10721464 0.00000000 |
| 24381 | | Rotation angle (degrees) 75.81486542 |
| 24382 | | Shift along axis 8.36407656 |
| 24383 | | |
| 24384 | | |
| 24385 | | > show #!4 models |
| 24386 | | |
| 24387 | | > hide #!5 models |
| 24388 | | |
| 24389 | | > fitmap #4 inMap #1 |
| 24390 | | |
| 24391 | | Fit map N55H_MBCD_P76_J149_007_volume_map_sharp in map |
| 24392 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc using 439920 points |
| 24393 | | correlation = 0.723, correlation about mean = 0.5277, overlap = 5275 |
| 24394 | | steps = 48, shift = 0.0163, angle = 0.0137 degrees |
| 24395 | | |
| 24396 | | Position of N55H_MBCD_P76_J149_007_volume_map_sharp (#4) relative to |
| 24397 | | WT_PIP2_P68_J150_009_volume_map_sharp.mrc (#1) coordinates: |
| 24398 | | Matrix rotation and translation |
| 24399 | | -0.71520638 0.69891332 -0.00004519 172.37039957 |
| 24400 | | 0.69891332 0.71520638 -0.00001187 -70.23268393 |
| 24401 | | 0.00002402 -0.00004007 -1.00000000 347.30147338 |
| 24402 | | Axis -0.37735395 -0.92606911 0.00001917 |
| 24403 | | Axis point 100.49087762 0.00000000 173.65174841 |
| 24404 | | Rotation angle (degrees) 179.99785921 |
| 24405 | | Shift along axis 0.00232522 |
| 24406 | | |
| 24407 | | |
| 24408 | | > hide #!4 models |
| 24409 | | |
| 24410 | | > show #!6 models |
| 24411 | | |
| 24412 | | > hide #!6 models |
| 24413 | | |
| 24414 | | > show #!7 models |
| 24415 | | |
| 24416 | | > fitmap #7 inMap #2 |
| 24417 | | |
| 24418 | | Fit molecule 231106_N55H_Chol_204.pdb (#7) to map |
| 24419 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 24420 | | average map value = 0.2279, steps = 28 |
| 24421 | | shifted from previous position = 0.0148 |
| 24422 | | rotated from previous position = 0.0275 degrees |
| 24423 | | atoms outside contour = 1329, contour level = 0.070496 |
| 24424 | | |
| 24425 | | Position of 231106_N55H_Chol_204.pdb (#7) relative to |
| 24426 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 24427 | | Matrix rotation and translation |
| 24428 | | 0.99999996 -0.00024998 -0.00010119 0.05775415 |
| 24429 | | 0.00025002 0.99999988 0.00041232 -0.11944318 |
| 24430 | | 0.00010108 -0.00041234 0.99999991 0.06066809 |
| 24431 | | Axis -0.83689197 -0.20527269 0.50741991 |
| 24432 | | Axis point 0.00000000 138.49201027 286.25667487 |
| 24433 | | Rotation angle (degrees) 0.02822923 |
| 24434 | | Shift along axis 0.00696863 |
| 24435 | | |
| 24436 | | |
| 24437 | | > fitmap #7 inMap #2 |
| 24438 | | |
| 24439 | | Fit molecule 231106_N55H_Chol_204.pdb (#7) to map |
| 24440 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 24441 | | average map value = 0.2279, steps = 28 |
| 24442 | | shifted from previous position = 0.0149 |
| 24443 | | rotated from previous position = 0.0275 degrees |
| 24444 | | atoms outside contour = 1331, contour level = 0.070496 |
| 24445 | | |
| 24446 | | Position of 231106_N55H_Chol_204.pdb (#7) relative to |
| 24447 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 24448 | | Matrix rotation and translation |
| 24449 | | 0.99999996 -0.00024832 -0.00009300 0.05553911 |
| 24450 | | 0.00024832 0.99999997 -0.00006746 -0.02252126 |
| 24451 | | 0.00009301 0.00006744 0.99999999 -0.01768566 |
| 24452 | | Axis 0.24653048 -0.33991958 0.90756675 |
| 24453 | | Axis point 83.47458033 218.38715308 0.00000000 |
| 24454 | | Rotation angle (degrees) 0.01567669 |
| 24455 | | Shift along axis 0.00529658 |
| 24456 | | |
| 24457 | | |
| 24458 | | > fitmap #7 inMap #2 |
| 24459 | | |
| 24460 | | Fit molecule 231106_N55H_Chol_204.pdb (#7) to map |
| 24461 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 24462 | | average map value = 0.2279, steps = 28 |
| 24463 | | shifted from previous position = 0.0149 |
| 24464 | | rotated from previous position = 0.0275 degrees |
| 24465 | | atoms outside contour = 1329, contour level = 0.070496 |
| 24466 | | |
| 24467 | | Position of 231106_N55H_Chol_204.pdb (#7) relative to |
| 24468 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 24469 | | Matrix rotation and translation |
| 24470 | | 0.99999996 -0.00024813 -0.00010501 0.05812458 |
| 24471 | | 0.00024818 0.99999988 0.00041172 -0.11897775 |
| 24472 | | 0.00010491 -0.00041175 0.99999991 0.05994352 |
| 24473 | | Axis -0.83676017 -0.21330005 0.50431686 |
| 24474 | | Axis point 0.00000000 136.98048713 285.40162883 |
| 24475 | | Rotation angle (degrees) 0.02819295 |
| 24476 | | Shift along axis 0.00697215 |
| 24477 | | |
| 24478 | | |
| 24479 | | > fitmap #7 inMap #2 |
| 24480 | | |
| 24481 | | Fit molecule 231106_N55H_Chol_204.pdb (#7) to map |
| 24482 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) using 10512 atoms |
| 24483 | | average map value = 0.2279, steps = 28 |
| 24484 | | shifted from previous position = 0.0149 |
| 24485 | | rotated from previous position = 0.0275 degrees |
| 24486 | | atoms outside contour = 1331, contour level = 0.070496 |
| 24487 | | |
| 24488 | | Position of 231106_N55H_Chol_204.pdb (#7) relative to |
| 24489 | | N55H_Chol_P52_J694_007_volume_map_sharp.mrc (#2) coordinates: |
| 24490 | | Matrix rotation and translation |
| 24491 | | 0.99999996 -0.00024830 -0.00009287 0.05551174 |
| 24492 | | 0.00024830 0.99999997 -0.00006741 -0.02249422 |
| 24493 | | 0.00009289 0.00006739 0.99999999 -0.01766191 |
| 24494 | | Axis 0.24640590 -0.33954546 0.90774061 |
| 24495 | | Axis point 83.39743478 218.30883530 0.00000000 |
| 24496 | | Rotation angle (degrees) 0.01567250 |
| 24497 | | Shift along axis 0.00528380 |
| 24498 | | |
| 24499 | | |
| 24500 | | > hide #!7 models |
| 24501 | | |
| 24502 | | > show #!8 models |
| 24503 | | |
| 24504 | | > fitmap #8 inMap #3 |
| 24505 | | |
| 24506 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 24507 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 24508 | | average map value = 0.5192, steps = 28 |
| 24509 | | shifted from previous position = 0.0261 |
| 24510 | | rotated from previous position = 0.029 degrees |
| 24511 | | atoms outside contour = 1475, contour level = 0.1679 |
| 24512 | | |
| 24513 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 24514 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 24515 | | Matrix rotation and translation |
| 24516 | | 0.99999998 -0.00013063 -0.00013229 0.03982865 |
| 24517 | | 0.00013062 0.99999999 -0.00004325 -0.01019724 |
| 24518 | | 0.00013230 0.00004323 0.99999999 -0.02201892 |
| 24519 | | Axis 0.22653616 -0.69308777 0.68433231 |
| 24520 | | Axis point 171.74089953 0.00000000 299.29036213 |
| 24521 | | Rotation angle (degrees) 0.01093660 |
| 24522 | | Shift along axis 0.00102195 |
| 24523 | | |
| 24524 | | |
| 24525 | | > fitmap #8 inMap #3 |
| 24526 | | |
| 24527 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 24528 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 24529 | | average map value = 0.5192, steps = 24 |
| 24530 | | shifted from previous position = 0.00215 |
| 24531 | | rotated from previous position = 0.00477 degrees |
| 24532 | | atoms outside contour = 1477, contour level = 0.1679 |
| 24533 | | |
| 24534 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 24535 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 24536 | | Matrix rotation and translation |
| 24537 | | 0.99999999 -0.00012898 -0.00007689 0.03138221 |
| 24538 | | 0.00012898 0.99999999 -0.00010535 0.00103765 |
| 24539 | | 0.00007690 0.00010534 0.99999999 -0.02284708 |
| 24540 | | Axis 0.57430657 -0.41921073 0.70316024 |
| 24541 | | Axis point -12.96954274 236.52290766 0.00000000 |
| 24542 | | Rotation angle (degrees) 0.01050974 |
| 24543 | | Shift along axis 0.00152286 |
| 24544 | | |
| 24545 | | |
| 24546 | | > fitmap #8 inMap #3 |
| 24547 | | |
| 24548 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 24549 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 24550 | | average map value = 0.5192, steps = 24 |
| 24551 | | shifted from previous position = 0.00467 |
| 24552 | | rotated from previous position = 0.00738 degrees |
| 24553 | | atoms outside contour = 1482, contour level = 0.1679 |
| 24554 | | |
| 24555 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 24556 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 24557 | | Matrix rotation and translation |
| 24558 | | 0.99999999 -0.00012443 0.00004758 0.00862741 |
| 24559 | | 0.00012444 0.99999998 -0.00013837 0.00812041 |
| 24560 | | -0.00004756 0.00013837 0.99999999 -0.01035449 |
| 24561 | | Axis 0.72039363 0.24766963 0.64783699 |
| 24562 | | Axis point 0.00000000 81.94413518 55.96033429 |
| 24563 | | Rotation angle (degrees) 0.01100496 |
| 24564 | | Shift along axis 0.00151829 |
| 24565 | | |
| 24566 | | |
| 24567 | | > fitmap #8 inMap #3 |
| 24568 | | |
| 24569 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 24570 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 24571 | | average map value = 0.5192, steps = 24 |
| 24572 | | shifted from previous position = 0.00721 |
| 24573 | | rotated from previous position = 0.00995 degrees |
| 24574 | | atoms outside contour = 1481, contour level = 0.1679 |
| 24575 | | |
| 24576 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 24577 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 24578 | | Matrix rotation and translation |
| 24579 | | 0.99999998 -0.00012429 0.00015262 -0.01140834 |
| 24580 | | 0.00012429 0.99999999 -0.00000005 -0.01685912 |
| 24581 | | -0.00015262 0.00000007 0.99999999 0.02272563 |
| 24582 | | Axis 0.00032438 0.77539907 0.63147144 |
| 24583 | | Axis point 143.62375916 0.00000000 74.77023465 |
| 24584 | | Rotation angle (degrees) 0.01127749 |
| 24585 | | Shift along axis 0.00127434 |
| 24586 | | |
| 24587 | | |
| 24588 | | > fitmap #8 inMap #3 |
| 24589 | | |
| 24590 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 24591 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 24592 | | average map value = 0.5192, steps = 24 |
| 24593 | | shifted from previous position = 0.00352 |
| 24594 | | rotated from previous position = 0.00474 degrees |
| 24595 | | atoms outside contour = 1477, contour level = 0.1679 |
| 24596 | | |
| 24597 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 24598 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 24599 | | Matrix rotation and translation |
| 24600 | | 0.99999998 -0.00012757 0.00013472 -0.00782614 |
| 24601 | | 0.00012756 0.99999999 0.00008069 -0.03233082 |
| 24602 | | -0.00013473 -0.00008067 0.99999999 0.03130024 |
| 24603 | | Axis -0.39878455 0.66588634 0.63052856 |
| 24604 | | Axis point 226.10426485 0.00000000 54.19131175 |
| 24605 | | Rotation angle (degrees) 0.01159202 |
| 24606 | | Shift along axis 0.00132799 |
| 24607 | | |
| 24608 | | |
| 24609 | | > fitmap #8 inMap #3 |
| 24610 | | |
| 24611 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 24612 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 24613 | | average map value = 0.5192, steps = 24 |
| 24614 | | shifted from previous position = 0.00109 |
| 24615 | | rotated from previous position = 0.00124 degrees |
| 24616 | | atoms outside contour = 1476, contour level = 0.1679 |
| 24617 | | |
| 24618 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 24619 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 24620 | | Matrix rotation and translation |
| 24621 | | 0.99999998 -0.00012698 0.00012149 -0.00544808 |
| 24622 | | 0.00012697 0.99999999 0.00009774 -0.03562280 |
| 24623 | | -0.00012150 -0.00009773 0.99999999 0.03179502 |
| 24624 | | Axis -0.48604991 0.60419044 0.63143440 |
| 24625 | | Axis point 286.28496774 -38.34141355 0.00000000 |
| 24626 | | Rotation angle (degrees) 0.01152126 |
| 24627 | | Shift along axis 0.00120156 |
| 24628 | | |
| 24629 | | |
| 24630 | | > fitmap #8 inMap #3 |
| 24631 | | |
| 24632 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 24633 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 24634 | | average map value = 0.5192, steps = 24 |
| 24635 | | shifted from previous position = 0.00162 |
| 24636 | | rotated from previous position = 0.00174 degrees |
| 24637 | | atoms outside contour = 1474, contour level = 0.1679 |
| 24638 | | |
| 24639 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 24640 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 24641 | | Matrix rotation and translation |
| 24642 | | 0.99999999 -0.00012651 0.00010009 -0.00140154 |
| 24643 | | 0.00012649 0.99999998 0.00011938 -0.03988496 |
| 24644 | | -0.00010011 -0.00011937 0.99999999 0.03182110 |
| 24645 | | Axis -0.59484355 0.49880708 0.63035914 |
| 24646 | | Axis point 319.24330215 -6.42126255 0.00000000 |
| 24647 | | Rotation angle (degrees) 0.01149809 |
| 24648 | | Shift along axis 0.00099751 |
| 24649 | | |
| 24650 | | |
| 24651 | | > fitmap #8 inMap #3 |
| 24652 | | |
| 24653 | | Fit molecule 231109_N55H_MBCD10_52.pdb (#8) to map |
| 24654 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) using 11718 atoms |
| 24655 | | average map value = 0.5192, steps = 24 |
| 24656 | | shifted from previous position = 0.00347 |
| 24657 | | rotated from previous position = 0.00345 degrees |
| 24658 | | atoms outside contour = 1479, contour level = 0.1679 |
| 24659 | | |
| 24660 | | Position of 231109_N55H_MBCD10_52.pdb (#8) relative to |
| 24661 | | N55H_MBCD_P74_J90_011_volume_map_sharp.mrc (#3) coordinates: |
| 24662 | | Matrix rotation and translation |
| 24663 | | 0.99999999 -0.00012532 0.00004860 0.00882473 |
| 24664 | | 0.00012531 0.99999998 0.00015048 -0.04588033 |
| 24665 | | -0.00004862 -0.00015047 0.99999999 0.02919503 |
| 24666 | | Axis -0.74578739 0.24092702 0.62109205 |
| 24667 | | Axis point 0.00000000 191.94584300 305.72176310 |
| 24668 | | Rotation angle (degrees) 0.01156025 |
| 24669 | | Shift along axis 0.00049762 |
| 24670 | | |
| 24671 | | |
| 24672 | | > hide #!8 models |
| 24673 | | |
| 24674 | | > show #!9 models |
| 24675 | | |
| 24676 | | > fitmap #9 inMap #4 |
| 24677 | | |
| 24678 | | Fit molecule 231107_N55H_MBCD100_46.pdb (#9) to map |
| 24679 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) using 10164 atoms |
| 24680 | | average map value = 0.1139, steps = 40 |
| 24681 | | shifted from previous position = 0.0206 |
| 24682 | | rotated from previous position = 0.0142 degrees |
| 24683 | | atoms outside contour = 1240, contour level = 0.056516 |
| 24684 | | |
| 24685 | | Position of 231107_N55H_MBCD100_46.pdb (#9) relative to |
| 24686 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) coordinates: |
| 24687 | | Matrix rotation and translation |
| 24688 | | 0.50005290 0.86599486 0.00002981 -62.07798969 |
| 24689 | | -0.86599457 0.50005276 -0.00079472 231.83874839 |
| 24690 | | -0.00070313 0.00037159 0.99999968 0.01986024 |
| 24691 | | Axis 0.00067339 0.00042318 -0.99999968 |
| 24692 | | Axis point 169.75340955 169.68430872 0.00000000 |
| 24693 | | Rotation angle (degrees) 59.99651510 |
| 24694 | | Shift along axis 0.03644650 |
| 24695 | | |
| 24696 | | |
| 24697 | | > fitmap #9 inMap #4 |
| 24698 | | |
| 24699 | | Fit molecule 231107_N55H_MBCD100_46.pdb (#9) to map |
| 24700 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) using 10164 atoms |
| 24701 | | average map value = 0.1139, steps = 40 |
| 24702 | | shifted from previous position = 0.0105 |
| 24703 | | rotated from previous position = 0.00569 degrees |
| 24704 | | atoms outside contour = 1243, contour level = 0.056516 |
| 24705 | | |
| 24706 | | Position of 231107_N55H_MBCD100_46.pdb (#9) relative to |
| 24707 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) coordinates: |
| 24708 | | Matrix rotation and translation |
| 24709 | | 0.50005024 0.86599639 -0.00003488 -62.06232893 |
| 24710 | | -0.86599608 0.50005003 -0.00086997 231.85077406 |
| 24711 | | -0.00073595 0.00046524 0.99999962 0.01909110 |
| 24712 | | Axis 0.00077091 0.00040477 -0.99999962 |
| 24713 | | Axis point 169.77094221 169.67656226 0.00000000 |
| 24714 | | Rotation angle (degrees) 59.99669553 |
| 24715 | | Shift along axis 0.02691118 |
| 24716 | | |
| 24717 | | |
| 24718 | | > fitmap #9 inMap #4 |
| 24719 | | |
| 24720 | | Fit molecule 231107_N55H_MBCD100_46.pdb (#9) to map |
| 24721 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) using 10164 atoms |
| 24722 | | average map value = 0.1139, steps = 40 |
| 24723 | | shifted from previous position = 0.00942 |
| 24724 | | rotated from previous position = 0.00352 degrees |
| 24725 | | atoms outside contour = 1240, contour level = 0.056516 |
| 24726 | | |
| 24727 | | Position of 231107_N55H_MBCD100_46.pdb (#9) relative to |
| 24728 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) coordinates: |
| 24729 | | Matrix rotation and translation |
| 24730 | | 0.50006364 0.86598866 0.00002291 -62.07738423 |
| 24731 | | -0.86598831 0.50006346 -0.00088376 231.85214555 |
| 24732 | | -0.00077678 0.00042210 0.99999961 0.02514406 |
| 24733 | | Axis 0.00075397 0.00046172 -0.99999961 |
| 24734 | | Axis point 169.76819315 169.69125613 0.00000000 |
| 24735 | | Rotation angle (degrees) 59.99580824 |
| 24736 | | Shift along axis 0.03510213 |
| 24737 | | |
| 24738 | | |
| 24739 | | > fitmap #9 inMap #4 |
| 24740 | | |
| 24741 | | Fit molecule 231107_N55H_MBCD100_46.pdb (#9) to map |
| 24742 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) using 10164 atoms |
| 24743 | | average map value = 0.1139, steps = 40 |
| 24744 | | shifted from previous position = 0.00767 |
| 24745 | | rotated from previous position = 0.00141 degrees |
| 24746 | | atoms outside contour = 1242, contour level = 0.056516 |
| 24747 | | |
| 24748 | | Position of 231107_N55H_MBCD100_46.pdb (#9) relative to |
| 24749 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) coordinates: |
| 24750 | | Matrix rotation and translation |
| 24751 | | 0.50004387 0.86600007 0.00002064 -62.07530718 |
| 24752 | | -0.86599972 0.50004369 -0.00089279 231.85827620 |
| 24753 | | -0.00078348 0.00042856 0.99999960 0.03281239 |
| 24754 | | Axis 0.00076291 0.00046427 -0.99999960 |
| 24755 | | Axis point 169.76925350 169.69110222 0.00000000 |
| 24756 | | Rotation angle (degrees) 59.99711671 |
| 24757 | | Shift along axis 0.02747439 |
| 24758 | | |
| 24759 | | |
| 24760 | | > fitmap #9 inMap #4 |
| 24761 | | |
| 24762 | | Fit molecule 231107_N55H_MBCD100_46.pdb (#9) to map |
| 24763 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) using 10164 atoms |
| 24764 | | average map value = 0.1139, steps = 40 |
| 24765 | | shifted from previous position = 0.005 |
| 24766 | | rotated from previous position = 0.0127 degrees |
| 24767 | | atoms outside contour = 1245, contour level = 0.056516 |
| 24768 | | |
| 24769 | | Position of 231107_N55H_MBCD100_46.pdb (#9) relative to |
| 24770 | | N55H_MBCD_P76_J149_007_volume_map_sharp (#4) coordinates: |
| 24771 | | Matrix rotation and translation |
| 24772 | | 0.50004182 0.86600125 -0.00011416 -62.04944727 |
| 24773 | | -0.86600108 0.50004162 -0.00071621 231.82313141 |
| 24774 | | -0.00056315 0.00045700 0.99999974 -0.00867578 |
| 24775 | | Axis 0.00067737 0.00025923 -0.99999974 |
| 24776 | | Axis point 169.75117402 169.65097181 0.00000000 |
| 24777 | | Rotation angle (degrees) 59.99724861 |
| 24778 | | Shift along axis 0.02674074 |
| 24779 | | |
| 24780 | | |
| 24781 | | > hide #!9 models |
| 24782 | | |
| 24783 | | > show #!8 models |
| 24784 | | |
| 24785 | | > show #!7 models |
| 24786 | | |
| 24787 | | > hide #!7 models |
| 24788 | | |
| 24789 | | > show #!7 models |
| 24790 | | |
| 24791 | | > hide #!7 models |
| 24792 | | |
| 24793 | | > view orient |
| 24794 | | |
| 24795 | | > show #!1 models |
| 24796 | | |
| 24797 | | > hide #!8 models |
| 24798 | | |
| 24799 | | > ui tool show "Side View" |
| 24800 | | |
| 24801 | | > view orient |
| 24802 | | |
| 24803 | | [Repeated 2 time(s)] |
| 24804 | | |
| 24805 | | > turn x 90 |
| 24806 | | |
| 24807 | | [Repeated 2 time(s)] |
| 24808 | | |
| 24809 | | > hide #!1 models |
| 24810 | | |
| 24811 | | > show #!7 models |
| 24812 | | |
| 24813 | | > turn y 15 |
| 24814 | | |
| 24815 | | > turn y -15 |
| 24816 | | |
| 24817 | | [Repeated 3 time(s)] |
| 24818 | | |
| 24819 | | > show #!1 models |
| 24820 | | |
| 24821 | | > hide #!1 models |
| 24822 | | |
| 24823 | | > show #!1 models |
| 24824 | | |
| 24825 | | > hide #!1 models |
| 24826 | | |
| 24827 | | > show #!1 models |
| 24828 | | |
| 24829 | | > hide #!7 models |
| 24830 | | |
| 24831 | | > view orient |
| 24832 | | |
| 24833 | | > turn x 90 |
| 24834 | | |
| 24835 | | [Repeated 2 time(s)] |
| 24836 | | |
| 24837 | | > view name 5 |
| 24838 | | |
| 24839 | | > hide #!1 models |
| 24840 | | |
| 24841 | | > show #!6 models |
| 24842 | | |
| 24843 | | > turn y 5 |
| 24844 | | |
| 24845 | | > turn y -5 |
| 24846 | | |
| 24847 | | [Repeated 12 time(s)] |
| 24848 | | |
| 24849 | | > turn y 5 |
| 24850 | | |
| 24851 | | [Repeated 1 time(s)] |
| 24852 | | |
| 24853 | | > turn y -5 |
| 24854 | | |
| 24855 | | [Repeated 1 time(s)] |
| 24856 | | |
| 24857 | | > turn y 5 |
| 24858 | | |
| 24859 | | > view orient |
| 24860 | | |
| 24861 | | > turn z 5 |
| 24862 | | |
| 24863 | | > turn z -5 |
| 24864 | | |
| 24865 | | [Repeated 10 time(s)] |
| 24866 | | |
| 24867 | | > turn z 5 |
| 24868 | | |
| 24869 | | > turn z 1 |
| 24870 | | |
| 24871 | | > turn z -1 |
| 24872 | | |
| 24873 | | [Repeated 4 time(s)] |
| 24874 | | |
| 24875 | | > turn x 90 |
| 24876 | | |
| 24877 | | [Repeated 2 time(s)] |
| 24878 | | |
| 24879 | | > view 1 |
| 24880 | | |
| 24881 | | > view 5 |
| 24882 | | |
| 24883 | | > turn y -10 |
| 24884 | | |
| 24885 | | [Repeated 6 time(s)] |
| 24886 | | |
| 24887 | | > turn y 10 |
| 24888 | | |
| 24889 | | > show #!1 models |
| 24890 | | |
| 24891 | | > hide #!6 models |
| 24892 | | |
| 24893 | | > show #!6 models |
| 24894 | | |
| 24895 | | > hide #!1 models |
| 24896 | | |
| 24897 | | > select #6 |
| 24898 | | |
| 24899 | | 11658 atoms, 11868 bonds, 6 pseudobonds, 1254 residues, 2 models selected |
| 24900 | | |
| 24901 | | > show sel ribbons |
| 24902 | | |
| 24903 | | > select clear |
| 24904 | | |
| 24905 | | > view orient |
| 24906 | | |
| 24907 | | [Repeated 2 time(s)] |
| 24908 | | |
| 24909 | | > turn x 90 |
| 24910 | | |
| 24911 | | [Repeated 2 time(s)] |
| 24912 | | |
| 24913 | | > turn y -10 |
| 24914 | | |
| 24915 | | [Repeated 1 time(s)] |
| 24916 | | |
| 24917 | | > view orient |
| 24918 | | |
| 24919 | | [Repeated 3 time(s)] |
| 24920 | | |
| 24921 | | > select #6/b,e, |
| 24922 | | |
| 24923 | | Expected an objects specifier or a keyword |
| 24924 | | |
| 24925 | | > select #6/b,e |
| 24926 | | |
| 24927 | | 3886 atoms, 3956 bonds, 2 pseudobonds, 418 residues, 2 models selected |
| 24928 | | |
| 24929 | | > hide sel ribbons |
| 24930 | | |
| 24931 | | > turn x 90 |
| 24932 | | |
| 24933 | | [Repeated 2 time(s)] |
| 24934 | | |
| 24935 | | > turn y -10 |
| 24936 | | |
| 24937 | | [Repeated 4 time(s)] |
| 24938 | | |
| 24939 | | > select #6/b,c,e,f, |
| 24940 | | |
| 24941 | | Expected an objects specifier or a keyword |
| 24942 | | |
| 24943 | | > select #6/b,c,e,f |
| 24944 | | |
| 24945 | | 7772 atoms, 7912 bonds, 4 pseudobonds, 836 residues, 2 models selected |
| 24946 | | |
| 24947 | | > hide sel ribbons |
| 24948 | | |
| 24949 | | > show #!7 models |
| 24950 | | |
| 24951 | | > hide #!6 models |
| 24952 | | |
| 24953 | | > show #!6 models |
| 24954 | | |
| 24955 | | > hide #!6 models |
| 24956 | | |
| 24957 | | > show #!6 models |
| 24958 | | |
| 24959 | | > hide #!6 models |
| 24960 | | |
| 24961 | | > show #!6 models |
| 24962 | | |
| 24963 | | > show #!8 models |
| 24964 | | |
| 24965 | | > hide #!7 models |
| 24966 | | |
| 24967 | | > hide #!6 models |
| 24968 | | |
| 24969 | | > view orient |
| 24970 | | |
| 24971 | | > show #!1 models |
| 24972 | | |
| 24973 | | > hide #!8 models |
| 24974 | | |
| 24975 | | > view orient |
| 24976 | | |
| 24977 | | [Repeated 2 time(s)] |
| 24978 | | |
| 24979 | | > turn x 90 |
| 24980 | | |
| 24981 | | [Repeated 2 time(s)] |
| 24982 | | |
| 24983 | | > show #!6 models |
| 24984 | | |
| 24985 | | > hide #!1 models |
| 24986 | | |
| 24987 | | > turn y -1 |
| 24988 | | |
| 24989 | | [Repeated 64 time(s)] |
| 24990 | | |
| 24991 | | > view name 1 |
| 24992 | | |
| 24993 | | > save "C:/Users/OJS/OneDrive - |
| 24994 | | > korea.ac.kr/MCSB/논문/230801_Re/MBCD/a_Align.cxs" |
| 24995 | | |
| 24996 | | ——— End of log from Fri Nov 10 19:29:33 2023 ——— |
| 24997 | | |
| 24998 | | opened ChimeraX session |
| 24999 | | |
| 25000 | | > view 1 |
| 25001 | | |
| 25002 | | > show #!5 models |
| 25003 | | |
| 25004 | | > hide #!6 models |
| 25005 | | |
| 25006 | | > hide #!5 models |
| 25007 | | |
| 25008 | | > show #!6 models |
| 25009 | | |
| 25010 | | > show #!5 models |
| 25011 | | |
| 25012 | | > hide #!6 models |
| 25013 | | |
| 25014 | | > select add #6 |
| 25015 | | |
| 25016 | | 11658 atoms, 11868 bonds, 6 pseudobonds, 1254 residues, 2 models selected |
| 25017 | | |
| 25018 | | > select subtract #6 |
| 25019 | | |
| 25020 | | Nothing selected |
| 25021 | | |
| 25022 | | > open "C:/Users/OJS/OneDrive - |
| 25023 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231112_N55H_CBX_208.pdb" |
| 25024 | | |
| 25025 | | Chain information for 231112_N55H_CBX_208.pdb #10 |
| 25026 | | --- |
| 25027 | | Chain | Description |
| 25028 | | A B C D E F | No description available |
| 25029 | | |
| 25030 | | |
| 25031 | | > color #10 #aa55ffff |
| 25032 | | |
| 25033 | | > select add #10 |
| 25034 | | |
| 25035 | | 8988 atoms, 9324 bonds, 6 pseudobonds, 1014 residues, 2 models selected |
| 25036 | | |
| 25037 | | > hide sel atoms |
| 25038 | | |
| 25039 | | > show sel cartoons |
| 25040 | | |
| 25041 | | > ui mousemode right "rotate selected models" |
| 25042 | | |
| 25043 | | > view matrix models |
| 25044 | | > #10,0.98905,0.12482,-0.078724,-6.4068,0.13112,-0.98808,0.080631,295.55,-0.067721,-0.09007,-0.99363,342.82 |
| 25045 | | |
| 25046 | | > view matrix models |
| 25047 | | > #10,0.99409,0.036615,-0.10223,11.139,0.049049,-0.99133,0.1219,303.16,-0.096885,-0.12619,-0.98726,352.65 |
| 25048 | | |
| 25049 | | > ui mousemode right "translate selected models" |
| 25050 | | |
| 25051 | | > view matrix models |
| 25052 | | > #10,0.99409,0.036615,-0.10223,-6.2414,0.049049,-0.99133,0.1219,265.88,-0.096885,-0.12619,-0.98726,340.63 |
| 25053 | | |
| 25054 | | > view matrix models |
| 25055 | | > #10,0.99409,0.036615,-0.10223,-18.488,0.049049,-0.99133,0.1219,273.42,-0.096885,-0.12619,-0.98726,344.84 |
| 25056 | | |
| 25057 | | > ui tool show "Fit in Map" |
| 25058 | | |
| 25059 | | > color #10 #aa55ffff |
| 25060 | | |
| 25061 | | > fitmap #10 inMap #5 |
| 25062 | | |
| 25063 | | Fit molecule 231112_N55H_CBX_208.pdb (#10) to map |
| 25064 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25065 | | average map value = 0.05229, steps = 76 |
| 25066 | | shifted from previous position = 1.36 |
| 25067 | | rotated from previous position = 2.86 degrees |
| 25068 | | atoms outside contour = 6633, contour level = 0.091964 |
| 25069 | | |
| 25070 | | Position of 231112_N55H_CBX_208.pdb (#10) relative to |
| 25071 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25072 | | Matrix rotation and translation |
| 25073 | | -0.20886552 -0.97214860 0.10631230 345.77099049 |
| 25074 | | 0.97604318 -0.21399935 -0.03929376 45.41569438 |
| 25075 | | 0.06095014 0.09555828 0.99355609 -29.24683860 |
| 25076 | | Axis 0.06903523 0.02322239 0.99734390 |
| 25077 | | Axis point 155.55023014 162.55197586 0.00000000 |
| 25078 | | Rotation angle (degrees) 102.39525192 |
| 25079 | | Shift along axis -4.24411640 |
| 25080 | | |
| 25081 | | |
| 25082 | | > fitmap #10 inMap #5 |
| 25083 | | |
| 25084 | | Fit molecule 231112_N55H_CBX_208.pdb (#10) to map |
| 25085 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25086 | | average map value = 0.05229, steps = 44 |
| 25087 | | shifted from previous position = 0.00754 |
| 25088 | | rotated from previous position = 0.0101 degrees |
| 25089 | | atoms outside contour = 6629, contour level = 0.091964 |
| 25090 | | |
| 25091 | | Position of 231112_N55H_CBX_208.pdb (#10) relative to |
| 25092 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25093 | | Matrix rotation and translation |
| 25094 | | -0.20876335 -0.97217049 0.10631280 345.76233444 |
| 25095 | | 0.97607359 -0.21388435 -0.03916422 45.37666669 |
| 25096 | | 0.06081294 0.09559306 0.99356115 -29.22904621 |
| 25097 | | Axis 0.06898499 0.02329230 0.99734575 |
| 25098 | | Axis point 155.55807858 162.54563981 0.00000000 |
| 25099 | | Rotation angle (degrees) 102.38873353 |
| 25100 | | Shift along axis -4.24212614 |
| 25101 | | |
| 25102 | | |
| 25103 | | > fitmap #10 inMap #5 |
| 25104 | | |
| 25105 | | Fit molecule 231112_N55H_CBX_208.pdb (#10) to map |
| 25106 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25107 | | average map value = 0.05229, steps = 44 |
| 25108 | | shifted from previous position = 0.0157 |
| 25109 | | rotated from previous position = 0.0149 degrees |
| 25110 | | atoms outside contour = 6627, contour level = 0.091964 |
| 25111 | | |
| 25112 | | Position of 231112_N55H_CBX_208.pdb (#10) relative to |
| 25113 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25114 | | Matrix rotation and translation |
| 25115 | | -0.20894586 -0.97214903 0.10615033 345.80229822 |
| 25116 | | 0.97604204 -0.21404751 -0.03905901 45.40142730 |
| 25117 | | 0.06069240 0.09544597 0.99358266 -29.18522003 |
| 25118 | | Axis 0.06885834 0.02327169 0.99735498 |
| 25119 | | Axis point 155.56804057 162.54804527 0.00000000 |
| 25120 | | Rotation angle (degrees) 102.39824161 |
| 25121 | | Shift along axis -4.24008321 |
| 25122 | | |
| 25123 | | |
| 25124 | | > fitmap #10 inMap #5 |
| 25125 | | |
| 25126 | | Fit molecule 231112_N55H_CBX_208.pdb (#10) to map |
| 25127 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25128 | | average map value = 0.05229, steps = 60 |
| 25129 | | shifted from previous position = 0.00856 |
| 25130 | | rotated from previous position = 0.00707 degrees |
| 25131 | | atoms outside contour = 6629, contour level = 0.091964 |
| 25132 | | |
| 25133 | | Position of 231112_N55H_CBX_208.pdb (#10) relative to |
| 25134 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25135 | | Matrix rotation and translation |
| 25136 | | -0.20892026 -0.97214689 0.10622037 345.78741076 |
| 25137 | | 0.97604062 -0.21403570 -0.03915901 45.40736979 |
| 25138 | | 0.06080327 0.09549428 0.99357124 -29.21223306 |
| 25139 | | Axis 0.06893407 0.02325072 0.99735024 |
| 25140 | | Axis point 155.55992351 162.54778672 0.00000000 |
| 25141 | | Rotation angle (degrees) 102.39747922 |
| 25142 | | Shift along axis -4.24253983 |
| 25143 | | |
| 25144 | | |
| 25145 | | > fitmap #10 inMap #5 |
| 25146 | | |
| 25147 | | Fit molecule 231112_N55H_CBX_208.pdb (#10) to map |
| 25148 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25149 | | average map value = 0.05229, steps = 44 |
| 25150 | | shifted from previous position = 0.0143 |
| 25151 | | rotated from previous position = 0.00423 degrees |
| 25152 | | atoms outside contour = 6629, contour level = 0.091964 |
| 25153 | | |
| 25154 | | Position of 231112_N55H_CBX_208.pdb (#10) relative to |
| 25155 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25156 | | Matrix rotation and translation |
| 25157 | | -0.20885622 -0.97216162 0.10621142 345.79404554 |
| 25158 | | 0.97605242 -0.21397465 -0.03919846 45.40640276 |
| 25159 | | 0.06083379 0.09548107 0.99357064 -29.21538882 |
| 25160 | | Axis 0.06894654 0.02323019 0.99734986 |
| 25161 | | Axis point 155.56276026 162.55887267 0.00000000 |
| 25162 | | Rotation angle (degrees) 102.39382798 |
| 25163 | | Shift along axis -4.24186313 |
| 25164 | | |
| 25165 | | |
| 25166 | | > ui mousemode right "rotate selected models" |
| 25167 | | |
| 25168 | | > view matrix models |
| 25169 | | > #10,0.97421,-0.020718,0.22471,-58.74,-0.032877,-0.99818,0.050507,299.33,0.22325,-0.056592,-0.97312,278.59 |
| 25170 | | |
| 25171 | | > view matrix models |
| 25172 | | > #10,0.9316,-0.329,0.15452,10.666,-0.33043,-0.94368,-0.017052,350.39,0.15142,-0.035172,-0.98784,289.29 |
| 25173 | | |
| 25174 | | > view matrix models |
| 25175 | | > #10,0.95087,-0.30658,-0.043102,35.133,-0.29884,-0.94528,0.13092,321.91,-0.080881,-0.11161,-0.99046,340.94 |
| 25176 | | |
| 25177 | | > fitmap #10 inMap #5 |
| 25178 | | |
| 25179 | | Fit molecule 231112_N55H_CBX_208.pdb (#10) to map |
| 25180 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25181 | | average map value = 0.1271, steps = 80 |
| 25182 | | shifted from previous position = 4.32 |
| 25183 | | rotated from previous position = 8.09 degrees |
| 25184 | | atoms outside contour = 3166, contour level = 0.091964 |
| 25185 | | |
| 25186 | | Position of 231112_N55H_CBX_208.pdb (#10) relative to |
| 25187 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25188 | | Matrix rotation and translation |
| 25189 | | -0.50014920 -0.86593925 -0.00000175 392.77434310 |
| 25190 | | 0.86593922 -0.50014919 -0.00023536 105.32271213 |
| 25191 | | 0.00020293 -0.00011923 0.99999998 -0.02430150 |
| 25192 | | Axis 0.00006705 -0.00011819 0.99999999 |
| 25193 | | Axis point 165.98917305 166.02298510 0.00000000 |
| 25194 | | Rotation angle (degrees) 120.00987203 |
| 25195 | | Shift along axis -0.01041286 |
| 25196 | | |
| 25197 | | |
| 25198 | | > fitmap #10 inMap #5 |
| 25199 | | |
| 25200 | | Fit molecule 231112_N55H_CBX_208.pdb (#10) to map |
| 25201 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25202 | | average map value = 0.1271, steps = 40 |
| 25203 | | shifted from previous position = 0.0131 |
| 25204 | | rotated from previous position = 0.00413 degrees |
| 25205 | | atoms outside contour = 3168, contour level = 0.091964 |
| 25206 | | |
| 25207 | | Position of 231112_N55H_CBX_208.pdb (#10) relative to |
| 25208 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25209 | | Matrix rotation and translation |
| 25210 | | -0.50009278 -0.86597183 -0.00000380 392.76558392 |
| 25211 | | 0.86597182 -0.50009277 -0.00020451 105.31511180 |
| 25212 | | 0.00017520 -0.00010557 0.99999998 -0.02176748 |
| 25213 | | Axis 0.00005713 -0.00010335 0.99999999 |
| 25214 | | Axis point 165.98469976 166.02518658 0.00000000 |
| 25215 | | Rotation angle (degrees) 120.00613886 |
| 25216 | | Shift along axis -0.01021414 |
| 25217 | | |
| 25218 | | |
| 25219 | | > fitmap #10 inMap #5 |
| 25220 | | |
| 25221 | | Fit molecule 231112_N55H_CBX_208.pdb (#10) to map |
| 25222 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25223 | | average map value = 0.1271, steps = 44 |
| 25224 | | shifted from previous position = 0.0145 |
| 25225 | | rotated from previous position = 0.00552 degrees |
| 25226 | | atoms outside contour = 3162, contour level = 0.091964 |
| 25227 | | |
| 25228 | | Position of 231112_N55H_CBX_208.pdb (#10) relative to |
| 25229 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25230 | | Matrix rotation and translation |
| 25231 | | -0.50001554 -0.86601644 0.00000746 392.76758969 |
| 25232 | | 0.86601642 -0.50001553 -0.00017002 105.27823512 |
| 25233 | | 0.00015097 -0.00007855 0.99999999 -0.02334997 |
| 25234 | | Axis 0.00005281 -0.00008285 1.00000000 |
| 25235 | | Axis point 165.99321652 166.01900515 0.00000000 |
| 25236 | | Rotation angle (degrees) 120.00102799 |
| 25237 | | Shift along axis -0.01133017 |
| 25238 | | |
| 25239 | | |
| 25240 | | > fitmap #10 inMap #5 |
| 25241 | | |
| 25242 | | Fit molecule 231112_N55H_CBX_208.pdb (#10) to map |
| 25243 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25244 | | average map value = 0.1271, steps = 28 |
| 25245 | | shifted from previous position = 0.0189 |
| 25246 | | rotated from previous position = 0.00582 degrees |
| 25247 | | atoms outside contour = 3165, contour level = 0.091964 |
| 25248 | | |
| 25249 | | Position of 231112_N55H_CBX_208.pdb (#10) relative to |
| 25250 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25251 | | Matrix rotation and translation |
| 25252 | | -0.49998350 -0.86603493 -0.00005049 392.76003543 |
| 25253 | | 0.86603493 -0.49998349 -0.00009527 105.27017299 |
| 25254 | | 0.00005726 -0.00009136 1.00000000 -0.00574925 |
| 25255 | | Axis 0.00000226 -0.00006221 1.00000000 |
| 25256 | | Axis point 165.99046786 166.01763736 0.00000000 |
| 25257 | | Rotation angle (degrees) 119.99890821 |
| 25258 | | Shift along axis -0.01141067 |
| 25259 | | |
| 25260 | | |
| 25261 | | > fitmap #10 inMap #5 |
| 25262 | | |
| 25263 | | Fit molecule 231112_N55H_CBX_208.pdb (#10) to map |
| 25264 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25265 | | average map value = 0.1271, steps = 28 |
| 25266 | | shifted from previous position = 0.0169 |
| 25267 | | rotated from previous position = 0.0132 degrees |
| 25268 | | atoms outside contour = 3161, contour level = 0.091964 |
| 25269 | | |
| 25270 | | Position of 231112_N55H_CBX_208.pdb (#10) relative to |
| 25271 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25272 | | Matrix rotation and translation |
| 25273 | | -0.49992679 -0.86606766 0.00010304 392.74586862 |
| 25274 | | 0.86606763 -0.49992680 -0.00025351 105.27116414 |
| 25275 | | 0.00027107 -0.00003750 0.99999997 -0.04922031 |
| 25276 | | Axis 0.00012471 -0.00009701 0.99999999 |
| 25277 | | Axis point 165.98080440 166.02261131 0.00000000 |
| 25278 | | Rotation angle (degrees) 119.99515818 |
| 25279 | | Shift along axis -0.01045285 |
| 25280 | | |
| 25281 | | |
| 25282 | | > select clear |
| 25283 | | |
| 25284 | | > hide #!5 models |
| 25285 | | |
| 25286 | | > open |
| 25287 | | > C:/Users/OJS/Desktop/Phenix/220302_Cx43_N55H_CBX/RealSpaceRefine_209/231112_From208_real_space_refined_209.pdb |
| 25288 | | |
| 25289 | | Chain information for 231112_From208_real_space_refined_209.pdb #11 |
| 25290 | | --- |
| 25291 | | Chain | Description |
| 25292 | | A B C D E F | No description available |
| 25293 | | |
| 25294 | | |
| 25295 | | > close #10 |
| 25296 | | |
| 25297 | | > color #11 #aa55ffff |
| 25298 | | |
| 25299 | | > show #!11 atoms |
| 25300 | | |
| 25301 | | > hide #!11 atoms |
| 25302 | | |
| 25303 | | > show #!11 cartoons |
| 25304 | | |
| 25305 | | > close #11 |
| 25306 | | |
| 25307 | | > open |
| 25308 | | > C:/Users/OJS/Desktop/Phenix/220302_Cx43_N55H_CBX/RealSpaceRefine_211/231112_From208_real_space_refined_209-coot-0_real_space_refined_211.pdb |
| 25309 | | |
| 25310 | | Chain information for |
| 25311 | | 231112_From208_real_space_refined_209-coot-0_real_space_refined_211.pdb #10 |
| 25312 | | --- |
| 25313 | | Chain | Description |
| 25314 | | A B C D E F | No description available |
| 25315 | | |
| 25316 | | |
| 25317 | | > color #10 #aa55ffff |
| 25318 | | |
| 25319 | | > hide #!10 atoms |
| 25320 | | |
| 25321 | | > show #!10 cartoons |
| 25322 | | |
| 25323 | | > color #10 #aa55ffff |
| 25324 | | |
| 25325 | | > select ::name="CBO" |
| 25326 | | |
| 25327 | | 738 atoms, 810 bonds, 18 residues, 1 model selected |
| 25328 | | |
| 25329 | | > show sel atoms |
| 25330 | | |
| 25331 | | > color sel green |
| 25332 | | |
| 25333 | | > color sel yellow |
| 25334 | | |
| 25335 | | > color sel byhetero |
| 25336 | | |
| 25337 | | > color sel lime |
| 25338 | | |
| 25339 | | > color sel byhetero |
| 25340 | | |
| 25341 | | > select clear |
| 25342 | | |
| 25343 | | > select #10:74-110 |
| 25344 | | |
| 25345 | | 1632 atoms, 1686 bonds, 186 residues, 1 model selected |
| 25346 | | |
| 25347 | | > select #10:74-103 |
| 25348 | | |
| 25349 | | 1578 atoms, 1632 bonds, 180 residues, 1 model selected |
| 25350 | | |
| 25351 | | > ui tool show "Selection Inspector" |
| 25352 | | |
| 25353 | | > setattr sel r ss_type 1 |
| 25354 | | |
| 25355 | | Assigning ss_type attribute to 180 items |
| 25356 | | |
| 25357 | | > select clear |
| 25358 | | |
| 25359 | | > ui tool show "Selection Inspector" |
| 25360 | | |
| 25361 | | > select add #10 |
| 25362 | | |
| 25363 | | 8988 atoms, 9324 bonds, 6 pseudobonds, 1014 residues, 2 models selected |
| 25364 | | |
| 25365 | | > ui tool show "Selection Inspector" |
| 25366 | | |
| 25367 | | > hide #!10 models |
| 25368 | | |
| 25369 | | > show #!9 models |
| 25370 | | |
| 25371 | | > show #!10 models |
| 25372 | | |
| 25373 | | > hide #!9 models |
| 25374 | | |
| 25375 | | > preset cartoons/nucleotides cylinders/stubs |
| 25376 | | |
| 25377 | | Using preset: Cartoons/Nucleotides / Cylinders/Stubs |
| 25378 | | Changed 8250 atom styles |
| 25379 | | Preset expands to these ChimeraX commands: |
| 25380 | | |
| 25381 | | |
| 25382 | | |
| 25383 | | show nucleic |
| 25384 | | hide protein|solvent|H |
| 25385 | | surf hide |
| 25386 | | style (protein|nucleic|solvent) & @@draw_mode=0 stick |
| 25387 | | cartoon |
| 25388 | | cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 |
| 25389 | | cartoon style ~(nucleic|strand) x round |
| 25390 | | cartoon style (nucleic|strand) x rect |
| 25391 | | cartoon style protein modeh tube rad 2 sides 24 thick 0.6 |
| 25392 | | cartoon style nucleic x round width 1.6 thick 1.6 |
| 25393 | | nucleotides stubs |
| 25394 | | |
| 25395 | | |
| 25396 | | |
| 25397 | | > select clear |
| 25398 | | |
| 25399 | | > select add #10 |
| 25400 | | |
| 25401 | | 8988 atoms, 9324 bonds, 6 pseudobonds, 1014 residues, 2 models selected |
| 25402 | | |
| 25403 | | > ui tool show "Selection Inspector" |
| 25404 | | |
| 25405 | | > setattr =sel p display false |
| 25406 | | |
| 25407 | | Assigning display attribute to 6 items |
| 25408 | | |
| 25409 | | > size =sel stickRadius 0.3 |
| 25410 | | |
| 25411 | | Changed 9324 bond radii |
| 25412 | | |
| 25413 | | > select clear |
| 25414 | | |
| 25415 | | > select #10:203-235 |
| 25416 | | |
| 25417 | | 1536 atoms, 1572 bonds, 186 residues, 1 model selected |
| 25418 | | |
| 25419 | | > ui tool show "Selection Inspector" |
| 25420 | | |
| 25421 | | > setattr sel r ss_type 1 |
| 25422 | | |
| 25423 | | Assigning ss_type attribute to 186 items |
| 25424 | | |
| 25425 | | > select clear |
| 25426 | | |
| 25427 | | > close #10 |
| 25428 | | |
| 25429 | | > open "C:/Users/OJS/OneDrive - |
| 25430 | | > korea.ac.kr/MCSB/논문/230801_Re/Map&Models/231112_N55H_CBX_211.pdb" |
| 25431 | | |
| 25432 | | Chain information for 231112_N55H_CBX_211.pdb #10 |
| 25433 | | --- |
| 25434 | | Chain | Description |
| 25435 | | A B C D E F | No description available |
| 25436 | | |
| 25437 | | |
| 25438 | | > color #10 #aa55ffff |
| 25439 | | |
| 25440 | | > show #!10 atoms |
| 25441 | | |
| 25442 | | > hide #!10 atoms |
| 25443 | | |
| 25444 | | > show #!10 cartoons |
| 25445 | | |
| 25446 | | > preset cartoons/nucleotides cylinders/stubs |
| 25447 | | |
| 25448 | | Using preset: Cartoons/Nucleotides / Cylinders/Stubs |
| 25449 | | Changed 8250 atom styles |
| 25450 | | Preset expands to these ChimeraX commands: |
| 25451 | | |
| 25452 | | |
| 25453 | | |
| 25454 | | show nucleic |
| 25455 | | hide protein|solvent|H |
| 25456 | | surf hide |
| 25457 | | style (protein|nucleic|solvent) & @@draw_mode=0 stick |
| 25458 | | cartoon |
| 25459 | | cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 |
| 25460 | | cartoon style ~(nucleic|strand) x round |
| 25461 | | cartoon style (nucleic|strand) x rect |
| 25462 | | cartoon style protein modeh tube rad 2 sides 24 thick 0.6 |
| 25463 | | cartoon style nucleic x round width 1.6 thick 1.6 |
| 25464 | | nucleotides stubs |
| 25465 | | |
| 25466 | | |
| 25467 | | |
| 25468 | | > color #10 #aa55ffff |
| 25469 | | |
| 25470 | | > rename #10:203-230 |
| 25471 | | |
| 25472 | | No name or id option specified for renaming |
| 25473 | | |
| 25474 | | > select #10:203-230 |
| 25475 | | |
| 25476 | | 1362 atoms, 1386 bonds, 168 residues, 1 model selected |
| 25477 | | |
| 25478 | | > select #10:203-235 |
| 25479 | | |
| 25480 | | 1536 atoms, 1572 bonds, 186 residues, 1 model selected |
| 25481 | | |
| 25482 | | > select #10:203-235, 74-103 |
| 25483 | | |
| 25484 | | 3114 atoms, 3204 bonds, 366 residues, 1 model selected |
| 25485 | | |
| 25486 | | > ui tool show "Selection Inspector" |
| 25487 | | |
| 25488 | | > setattr sel r ss_type 1 |
| 25489 | | |
| 25490 | | Assigning ss_type attribute to 366 items |
| 25491 | | |
| 25492 | | > ui tool show "Selection Inspector" |
| 25493 | | |
| 25494 | | > select clear |
| 25495 | | |
| 25496 | | > select add #10 |
| 25497 | | |
| 25498 | | 8988 atoms, 9324 bonds, 6 pseudobonds, 1014 residues, 2 models selected |
| 25499 | | |
| 25500 | | > ui tool show "Selection Inspector" |
| 25501 | | |
| 25502 | | > setattr =sel p display false |
| 25503 | | |
| 25504 | | Assigning display attribute to 6 items |
| 25505 | | |
| 25506 | | > size =sel stickRadius 0.3 |
| 25507 | | |
| 25508 | | Changed 9324 bond radii |
| 25509 | | |
| 25510 | | > ui mousemode right "rotate selected models" |
| 25511 | | |
| 25512 | | > show #!5 models |
| 25513 | | |
| 25514 | | > ui mousemode right "rotate selected models" |
| 25515 | | |
| 25516 | | > view matrix models |
| 25517 | | > #10,0.96209,0.14332,-0.23205,19.307,0.23467,-0.86853,0.43656,202.11,-0.13898,-0.47446,-0.86923,398.43 |
| 25518 | | |
| 25519 | | > ui mousemode right "translate selected models" |
| 25520 | | |
| 25521 | | > view matrix models |
| 25522 | | > #10,0.96209,0.14332,-0.23205,-13.646,0.23467,-0.86853,0.43656,179.06,-0.13898,-0.47446,-0.86923,383.18 |
| 25523 | | |
| 25524 | | > fitmap #10 inMap #5 |
| 25525 | | |
| 25526 | | Fit molecule 231112_N55H_CBX_211.pdb (#10) to map |
| 25527 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25528 | | average map value = 0.04985, steps = 104 |
| 25529 | | shifted from previous position = 3.53 |
| 25530 | | rotated from previous position = 9.71 degrees |
| 25531 | | atoms outside contour = 6910, contour level = 0.091964 |
| 25532 | | |
| 25533 | | Position of 231112_N55H_CBX_211.pdb (#10) relative to |
| 25534 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25535 | | Matrix rotation and translation |
| 25536 | | -0.12411431 -0.92048405 0.37054657 289.51364275 |
| 25537 | | 0.98605083 -0.15615162 -0.05762314 39.96927776 |
| 25538 | | 0.11090263 0.35822590 0.92702471 -62.21118018 |
| 25539 | | Axis 0.21124551 0.13189550 0.96849311 |
| 25540 | | Axis point 134.63185769 148.68995698 0.00000000 |
| 25541 | | Rotation angle (degrees) 100.17298124 |
| 25542 | | Shift along axis 6.17912602 |
| 25543 | | |
| 25544 | | |
| 25545 | | > view matrix models |
| 25546 | | > #10,0.98696,0.069915,-0.14497,-16.317,0.11674,-0.93104,0.34575,222.62,-0.1108,-0.35817,-0.92706,364.67 |
| 25547 | | |
| 25548 | | > fitmap #10 inMap #5 |
| 25549 | | |
| 25550 | | Fit molecule 231112_N55H_CBX_211.pdb (#10) to map |
| 25551 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25552 | | average map value = 0.04985, steps = 84 |
| 25553 | | shifted from previous position = 4.58 |
| 25554 | | rotated from previous position = 0.00725 degrees |
| 25555 | | atoms outside contour = 6913, contour level = 0.091964 |
| 25556 | | |
| 25557 | | Position of 231112_N55H_CBX_211.pdb (#10) relative to |
| 25558 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25559 | | Matrix rotation and translation |
| 25560 | | -0.12411325 -0.92047209 0.37057662 289.50228486 |
| 25561 | | 0.98606407 -0.15611017 -0.05750887 39.94403812 |
| 25562 | | 0.11078609 0.35827467 0.92701980 -62.20237392 |
| 25563 | | Axis 0.21121151 0.13196951 0.96849045 |
| 25564 | | Axis point 134.63464530 148.67742621 0.00000000 |
| 25565 | | Rotation angle (degrees) 100.17188722 |
| 25566 | | Shift along axis 6.17520629 |
| 25567 | | |
| 25568 | | |
| 25569 | | > fitmap #10 inMap #5 |
| 25570 | | |
| 25571 | | Fit molecule 231112_N55H_CBX_211.pdb (#10) to map |
| 25572 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25573 | | average map value = 0.04985, steps = 48 |
| 25574 | | shifted from previous position = 0.00471 |
| 25575 | | rotated from previous position = 0.00764 degrees |
| 25576 | | atoms outside contour = 6912, contour level = 0.091964 |
| 25577 | | |
| 25578 | | Position of 231112_N55H_CBX_211.pdb (#10) relative to |
| 25579 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25580 | | Matrix rotation and translation |
| 25581 | | -0.12411660 -0.92043705 0.37066254 289.48790830 |
| 25582 | | 0.98607297 -0.15608850 -0.05741506 39.92543657 |
| 25583 | | 0.11070310 0.35837414 0.92699126 -62.20014697 |
| 25584 | | Axis 0.21121458 0.13205543 0.96847806 |
| 25585 | | Axis point 134.63563545 148.66534541 0.00000000 |
| 25586 | | Rotation angle (degrees) 100.17218436 |
| 25587 | | Shift along axis 6.17696121 |
| 25588 | | |
| 25589 | | |
| 25590 | | > ui mousemode right "rotate selected models" |
| 25591 | | |
| 25592 | | > view matrix models |
| 25593 | | > #10,0.8314,-0.5417,-0.12381,107.64,-0.51534,-0.83501,0.19283,338.46,-0.20784,-0.096517,-0.97339,348.41 |
| 25594 | | |
| 25595 | | > fitmap #10 inMap #5 |
| 25596 | | |
| 25597 | | Fit molecule 231112_N55H_CBX_211.pdb (#10) to map |
| 25598 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25599 | | average map value = 0.1263, steps = 208 |
| 25600 | | shifted from previous position = 10 |
| 25601 | | rotated from previous position = 21 degrees |
| 25602 | | atoms outside contour = 3173, contour level = 0.091964 |
| 25603 | | |
| 25604 | | Position of 231112_N55H_CBX_211.pdb (#10) relative to |
| 25605 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25606 | | Matrix rotation and translation |
| 25607 | | -0.50004942 -0.86599687 0.00002654 392.76076694 |
| 25608 | | 0.86599687 -0.50004942 -0.00008829 105.28637156 |
| 25609 | | 0.00008973 -0.00002116 1.00000000 -0.01720079 |
| 25610 | | Axis 0.00003876 -0.00003648 1.00000000 |
| 25611 | | Axis point 165.98882916 166.01598164 0.00000000 |
| 25612 | | Rotation angle (degrees) 120.00326979 |
| 25613 | | Shift along axis -0.00581935 |
| 25614 | | |
| 25615 | | |
| 25616 | | > fitmap #10 inMap #5 |
| 25617 | | |
| 25618 | | Fit molecule 231112_N55H_CBX_211.pdb (#10) to map |
| 25619 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) using 8988 atoms |
| 25620 | | average map value = 0.1263, steps = 28 |
| 25621 | | shifted from previous position = 0.0217 |
| 25622 | | rotated from previous position = 0.0229 degrees |
| 25623 | | atoms outside contour = 3180, contour level = 0.091964 |
| 25624 | | |
| 25625 | | Position of 231112_N55H_CBX_211.pdb (#10) relative to |
| 25626 | | N55H_CBX_P52_J662_003_volume_map_sharp.mrc (#5) coordinates: |
| 25627 | | Matrix rotation and translation |
| 25628 | | -0.50027893 -0.86586427 0.00022924 392.75456944 |
| 25629 | | 0.86586430 -0.50027891 0.00013316 105.33071507 |
| 25630 | | -0.00000061 0.00026510 0.99999997 -0.04872020 |
| 25631 | | Axis 0.00007619 0.00013273 0.99999999 |
| 25632 | | Axis point 165.98223634 166.00167297 0.00000000 |
| 25633 | | Rotation angle (degrees) 120.01845611 |
| 25634 | | Shift along axis -0.00481482 |
| 25635 | | |
| 25636 | | |
| 25637 | | > show #!9 models |
| 25638 | | |
| 25639 | | > hide #!10 models |
| 25640 | | |
| 25641 | | > hide #!5 models |
| 25642 | | |
| 25643 | | > show #!10 models |
| 25644 | | |
| 25645 | | > select #6-10/b,c,e,f |
| 25646 | | |
| 25647 | | 35360 atoms, 36288 bonds, 20 pseudobonds, 3932 residues, 10 models selected |
| 25648 | | |
| 25649 | | > hide sel ribobn |
| 25650 | | |
| 25651 | | Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', |
| 25652 | | 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword |
| 25653 | | |
| 25654 | | > hide sel ribbons |
| 25655 | | |
| 25656 | | > view 1 |
| 25657 | | |
| 25658 | | > select add #6 |
| 25659 | | |
| 25660 | | 39246 atoms, 40244 bonds, 22 pseudobonds, 4350 residues, 10 models selected |
| 25661 | | |
| 25662 | | > select subtract #6 |
| 25663 | | |
| 25664 | | 27588 atoms, 28376 bonds, 16 pseudobonds, 3096 residues, 8 models selected |
| 25665 | | |
| 25666 | | > select add #7 |
| 25667 | | |
| 25668 | | 31092 atoms, 31988 bonds, 18 pseudobonds, 3492 residues, 8 models selected |
| 25669 | | |
| 25670 | | > select add #8 |
| 25671 | | |
| 25672 | | 34998 atoms, 35980 bonds, 20 pseudobonds, 3904 residues, 8 models selected |
| 25673 | | |
| 25674 | | > select subtract #8 |
| 25675 | | |
| 25676 | | 23280 atoms, 24004 bonds, 14 pseudobonds, 2668 residues, 6 models selected |
| 25677 | | |
| 25678 | | > select subtract #7 |
| 25679 | | |
| 25680 | | 12768 atoms, 13168 bonds, 8 pseudobonds, 1480 residues, 4 models selected |
| 25681 | | |
| 25682 | | > select add #7 |
| 25683 | | |
| 25684 | | 23280 atoms, 24004 bonds, 14 pseudobonds, 2668 residues, 6 models selected |
| 25685 | | |
| 25686 | | > select subtract #7 |
| 25687 | | |
| 25688 | | 12768 atoms, 13168 bonds, 8 pseudobonds, 1480 residues, 4 models selected |
| 25689 | | |
| 25690 | | > select add #9 |
| 25691 | | |
| 25692 | | 16156 atoms, 16644 bonds, 10 pseudobonds, 1882 residues, 4 models selected |
| 25693 | | |
| 25694 | | > select subtract #9 |
| 25695 | | |
| 25696 | | 5992 atoms, 6216 bonds, 4 pseudobonds, 676 residues, 2 models selected |
| 25697 | | |
| 25698 | | > select add #10 |
| 25699 | | |
| 25700 | | 8988 atoms, 9324 bonds, 6 pseudobonds, 1014 residues, 2 models selected |
| 25701 | | |
| 25702 | | > select subtract #10 |
| 25703 | | |
| 25704 | | Nothing selected |
| 25705 | | |
| 25706 | | > select add #10 |
| 25707 | | |
| 25708 | | 8988 atoms, 9324 bonds, 6 pseudobonds, 1014 residues, 2 models selected |
| | 2836 | |
| | 2837 | [had to delete a bunch of stuff to fit within ticket limits] |
| | 2838 | |
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
