| 1 | <!--
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| 2 | ChimeraX bundle names must start with "ChimeraX-"
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| 3 | to avoid clashes with package names in pypi.python.org.
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| 4 | When uploaded to the ChimeraX toolshed, the bundle
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| 5 | will be displayed without the ChimeraX- prefix.
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| 6 | -->
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| 7 |
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| 8 | <BundleInfo name="wiggle"
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| 9 | version="0.2.2" package="chimerax.wiggle"
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| 10 | minSessionVersion="1" maxSessionVersion="1">
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| 11 |
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| 12 | <!-- Additional information about bundle source -->
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| 13 | <Author>Charles Bayly-Jones</Author>
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| 14 | <Email>charles.bayly-jones@monash.edu</Email>
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| 15 | <URL>https://www.rbvi.ucsf.edu/chimerax/</URL>
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| 16 |
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| 17 | <!-- Synopsis is a one-line description
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| 18 | Description is a full multi-line description -->
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| 19 | <Synopsis>Interface for interpreting protein configurational space</Synopsis>
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| 20 | <Description>Wiggle is a fully integrated interface of cryoSPARC, cryoDRGN and ChimeraX. It performs
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| 21 | complex dimension reduction analyses, clustering and trajectory inference. These seemlessly interface
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| 22 | with ChimeraX to enable volumetric visualisation while navigating lower-dimensional embeddings of complex
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| 23 | protein conformational environments.
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| 24 | </Description>
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| 25 |
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| 26 | <!-- Categories is a list where this bundle should appear -->
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| 27 | <Categories>
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| 28 | <Category name="General"/>
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| 29 | </Categories>
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| 30 |
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| 31 | <!-- Dependencies on other ChimeraX/Python packages -->
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| 32 | <!-- This example uses functionality from the Tutorial_Command bundle -->
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| 33 | <Dependencies>
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| 34 | <Dependency name="ChimeraX-Core" version="~=1.3"/>
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| 35 | <Dependency name="ChimeraX-UI" version="~=1.0"/>
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| 36 | <Dependency name="mrcfile"/>
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| 37 | <Dependency name="phate"/>
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| 38 | <Dependency name="pyyaml"/>
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| 39 | <Dependency name="pyqtgraph"/>
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| 40 | <Dependency name="scikit-image"/>
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| 41 | <Dependency name="scikit-learn"/>
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| 42 | <Dependency name="torch"/>
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| 43 | <Dependency name="umap-learn"/>
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| 44 | </Dependencies>
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| 45 |
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| 46 | <!-- Non-Python files that are part of package -->
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| 47 | <DataFiles>
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| 48 | <DataFile>docs/user/tools/tutorial.html</DataFile>
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| 49 | <DataDir>deps</DataDir>
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| 50 | <DataDir>resources</DataDir>
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| 51 | </DataFiles>
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| 52 |
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| 53 | <Classifiers>
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| 54 | <!-- Development Status should be compatible with bundle version number -->
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| 55 | <PythonClassifier>Development Status :: 3 - Alpha</PythonClassifier>
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| 56 | <PythonClassifier>License :: Freeware</PythonClassifier>
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| 57 | <!-- ChimeraX classifiers describe supplied functionality -->
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| 58 | <!-- Register a graphical interface tool -->
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| 59 | <ChimeraXClassifier>ChimeraX :: Tool :: wiggle ::
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| 60 | General :: Protein conformational dynamics analysis</ChimeraXClassifier>
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| 61 | </Classifiers>
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| 62 |
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| 63 | </BundleInfo>
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