| 1 | close all
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| 2 |
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| 3 | open 5UH6
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| 4 | open 5UHG
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| 5 |
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| 6 | #match #2 to #1 showAli true
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| 7 | match #2 to #1
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| 8 |
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| 9 | # sets the preset to publication
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| 10 | set bg white
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| 11 | graphics silhouettes t
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| 12 | # Set a view
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| 13 | view name start
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| 14 | hide all
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| 15 | select nucleic-acid
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| 16 | show sel ribbon
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| 17 | show sel atoms
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| 18 | nucleotides stubs
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| 19 | # Sets the nuclotide selection
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| 20 | name frozen NN sel
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| 21 | sel ~sel
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| 22 | ~sel :RFP
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| 23 | # Sets the surface selection
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| 24 | name frozen SS sel
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| 25 | show SS surface
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| 26 | surface SS trans 0
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| 27 | #
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| 28 | sel #1.6
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| 29 | name frozen beta sel
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| 30 | sel clear
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| 31 |
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| 32 | # Set RFP name
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| 33 | sel :RFP
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| 34 | name frozen rfp sel
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| 35 |
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| 36 | sel #1.6; sel subtract /C:1036-1200; name frozen beta2 sel; sel clear
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| 37 | ## Scripts
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| 38 |
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| 39 | turn y 270
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| 40 | surface SS trans 70
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| 41 | show :MG atoms
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| 42 |
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| 43 | view name init1
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| 44 |
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| 45 | ###
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| 46 | turn y 50
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| 47 | turn x 10
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| 48 | zoom 2
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| 49 | view name rfp_s
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| 50 | ###
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| 51 | view rfp_s
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| 52 | cofr rfp
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| 53 | turn y -50
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| 54 | turn x -10
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| 55 | move y -10
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| 56 | zoom 4
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| 57 | move x 15
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| 58 | move y -4
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| 59 | view name rfp_f
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| 60 |
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| 61 | #new view
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| 62 | view rfp_f
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| 63 | zoom 0.6
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| 64 | turn y 30
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| 65 | view name rfp_fl
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| 66 | turn y -80
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| 67 | view name rfp_fr
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| 68 |
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| 69 | # Starting
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| 70 | view init1
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| 71 |
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| 72 |
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| 73 | #
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| 74 | view init1
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| 75 | zoom 1.4
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| 76 | move x 10
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| 77 | view name dna
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| 78 |
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| 79 | ####
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| 80 | split #1
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| 81 | close #1/A
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| 82 | close #1/B
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| 83 | close #1/C
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| 84 | close #1/D
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| 85 | close #1/E
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| 86 | close #1/F
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| 87 |
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| 88 | close #1/H
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| 89 |
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| 90 | #close real DNA
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| 91 | hide #2/G ribbon
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| 92 | hide #2/G atoms
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| 93 |
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| 94 | style rfp stick; hide rfp surface; show rfp atoms; color rfp yellow; color rfp byhetero
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| 95 |
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| 96 | nucleotides atoms
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| 97 | style nucleic stick
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| 98 |
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| 99 | view dna
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| 100 | turn y 180
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| 101 | move y 7
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| 102 | zoom 1.4
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| 103 | view name daap1
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| 104 |
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| 105 | ####
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| 106 |
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| 107 | view dna
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| 108 | wait 10
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| 109 |
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| 110 | crossfade 10;
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| 111 | col :88G hotpink; color :88G byhetero; show :88G atoms
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| 112 | wait 10;
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| 113 |
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| 114 | view daap1 frames 60
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| 115 | cofr :88G
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| 116 | wait 60
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| 117 |
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| 118 | turn y 1 50
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| 119 | wait 50
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| 120 |
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| 121 |
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| 122 | select /D:852
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| 123 |
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| 124 |
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| 125 |
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| 126 |
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| 127 |
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| 128 |
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