[Chimera-users] Question: PDB file creation

[Kenji MATSUI]

Dear Chimera company

Thank you for allowing me to use your software. I am Japanese, so I hope
you will understand that there are some inappropriate expressions. I would
like to ask you one question.


I would like to know how to overlay the docked protein (osh4)-ligand
(cholesterol) complex (the gray one in the figure) and the complex on the
PDB.



[image: image.png]


Aim

I would like to know how well the docked data matches the data in the PDB.


Methods I have tried


I did it based on the following link from Chimera.


https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/matchalign/matchalign.html
Thank you for your cooperation.
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松井 健治
 東京農工大学大学院 工学府産業技術専攻 修士
〒184-8588 東京都小金井市中町2-24-16
 Mail: s214903z at st.go.tuat.ac.jp

Kenji Matsui
 Graduate School of Tokyo University of Agriculture and Technology
2-24-16, Nakamachi, Koganei-shi, Tokyo 184-8588, Japan
 Mail: s214903z at st.go.tuat.ac.jp
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