<div dir="ltr"><div>Dear Chimera company</div><div><br></div><div><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><span style="background:transparent;margin-top:0pt;margin-bottom:0pt">Thank you for allowing me to use your software. I am Japanese, so I hope you will understand that there are some inappropriate expressions. I would like to ask you one question.</span></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><span style="background:transparent;margin-top:0pt;margin-bottom:0pt"><br></span></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><span style="background-color:transparent">I would like to know how to overlay the docked protein (osh4)-ligand (cholesterol) complex (the gray one in the figure) and the complex on the PDB.</span><br></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><span style="background:transparent;margin-top:0pt;margin-bottom:0pt"></span></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><br></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><span style="background:transparent;margin-top:0pt;margin-bottom:0pt"><br></span></p><img src="cid:ii_ky2agkv90" alt="image.png" width="412" height="233"><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><br></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><span style="background:transparent;margin-top:0pt;margin-bottom:0pt">Aim</span></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt">I would like to<span style="background-color:transparent"> know how well the docked data matches the data in the PDB.</span></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><br></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><span style="background:transparent;margin-top:0pt;margin-bottom:0pt">Methods I have tried</span></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><br></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt">I did it based on the following link from Chimera.<br></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><br></p><p style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt"><span style="color:rgb(34,34,34)"><a href="https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/matchalign/matchalign.html">https://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/matchalign/matchalign.html</a></span><br></p><h1 style="background:transparent;color:rgb(14,16,26);margin-top:0pt;margin-bottom:0pt;font-weight:normal"><span style="background:transparent;margin-top:0pt;margin-bottom:0pt"><font size="2">Thank you for your cooperation.</font></span></h1></div><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><span style="color:rgb(34,34,34)">------------------------------</span><span style="color:rgb(34,34,34)">------------------------------</span><span style="color:rgb(34,34,34)">---------------</span><br></div>松井　健治<div> 東京農工大学大学院 工学府産業技術専攻 修士 </div><div>〒184-8588 東京都小金井市中町2-24-16</div><div> Mail: <a href="mailto:s214903z@st.go.tuat.ac.jp" target="_blank">s214903z@st.go.tuat.ac.jp</a><br></div><div><br></div><div><span style="color:rgb(34,34,34)">Kenji Matsui</span><br style="color:rgb(34,34,34)"><span style="color:rgb(34,34,34)"> Graduate School of Tokyo University of Agriculture and Technology</span><br style="color:rgb(34,34,34)"><span style="color:rgb(34,34,34)">2-24-16, Nakamachi, Koganei-shi, Tokyo 184-8588, Japan</span><br style="color:rgb(34,34,34)"><div style="color:rgb(34,34,34)"> Mail: <a href="mailto:s214903z@st.go.tuat.ac.jp" style="color:rgb(17,85,204)" target="_blank">s214903z@st.go.tuat.ac.jp</a></div></div></div></div></div></div>