[Chimera-users] Chimera-users Digest, Vol 226, Issue 6

[Martti Tolvanen]

Hi Kaina and Elaine,

If the goal is just to demonstrate the similarities of the two domains in your proteins, you could also consider breaking the model in two and superimposing each domain separately. Another feasible but tedious approach for rotating bonds (which I do not recommend because it means altering the structure from what was observed) would be to measure torsion angles in the protein backbone of the "linker" region of one model and then set the torsion angles into the same values in the other model, using the command line or a script. 
Best,
-Martti

--
Martti Tolvanen
Lecturer in bioinformatics
U of Turku, Finland

-----Original Message-----
From: chimera-users-request at cgl.ucsf.edu [mailto:chimera-users-request at cgl.ucsf.edu] 
Sent: 11. helmikuutata 2022 23:31
To: chimera-users at cgl.ucsf.edu
Subject: Chimera-users Digest, Vol 226, Issue 6

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