[Chimera-users] questions

[ARLEY REY PAEZ]

Best regard,
My name is Arley, I am a postgraduate student at the federal university of
Lavras, Brazil.
I write this message because I have doubts about how to calculate the RMSD
between two ligands after docking and redocking. My question is if Chimera
works well to perform that calculation, since when for example I have two
structures (ligands) that are, visually well superimposed and I calculate
the value of RMSD with the use of the rmsd # 0 # 1 command, their value is
high when compared With a structure that is not visually superimposed, why
does that happen? Is it that chimera is not useful to carry out this task?
I appreciate you can help me with that concern.

Att;

Arley

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Este e-mail foi enviado por um estudante da Universidade Federal de Lavras 
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desconsiderá-la.
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