[Chimera-users] Making oligomers from Alphafold predictions

[tim smith]

Thank you, Elaine and Kevin, for your response.
The Rosetta Symmetry docking is up to 400 amino acids, and mine is 800. I
can't use it as it is. Wondering there is any other server for predicting
symmetry.

Thank you.

Best
Smith

On Tue, Aug 31, 2021 at 7:02 PM Kevin Jude <kjude at stanford.edu> wrote:

>  Hi Smith, you can use Rosetta Symmetric Docking. It's available on the
> ROSIE server
>
> https://rosie.rosettacommons.org/symmetric_docking
>
> --
> Kevin Jude, PhD (he/him/his)
> Structural Biology Research Specialist, Garcia Lab
> Howard Hughes Medical Institute
> Stanford University School of Medicine
> Beckman B177, 279 Campus Drive, Stanford CA 94305
> Phone: (650) 723-6431
>
> On Tue, Aug 31, 2021 at 4:30 AM tim smith via Chimera-users <
> chimera-users at cgl.ucsf.edu> wrote:
>
>> Hi All,
>> Apologies for the nonrelated question!!
>>
>> Wondering if there are any tools (can make in chimera/chimerax/Pymol)
>> that predict or build protein oligomers based on alphfold structure.
>>  Please let me know. I will be grateful for your kind responses. Thank you
>>
>> Best
>> Smith
>> _______________________________________________
>> Chimera-users mailing list: Chimera-users at cgl.ucsf.edu
>> Manage subscription:
>> https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20210901/46a55e9e/attachment.html>