[Chimera-users] Measuring rmsd without having exact number of atoms

[Ahmad Khalifa]

Hi,

Is there a work around measuring rmsd between two structures of the same
protein, with one of them missing some segments, without having to rebuild
/ model the missing parts?!

I'm thinking of writing a quick script to check for the matching segments,
calculate rmsd for those and take an average of these measurements, unless
there's a quicker way to do it!

Regards.
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