[Chimera-users] rmsd graph

SEFA ÇELİK scelik at istanbul.edu.tr
Sun Sep 30 23:28:51 PDT 2018


Dear Dr.

I am using Chimera software(windows platform). I tried to get rmsd graph(using
the plotting in the MD Movie trajectory viewer). And I got the result.
But, graph's x-axis "frame" and y-axis "rmsd" value. I want the x axis to
be the "time".  Briefly, I want to see how the value of rmsd changes with
time.
*I added files to the e-mail. Can you explain what "1001 frames" mean? And
how do I convert "1001 frames" to time. I want to see the RMSD change by
time.*
Can you help with this? Could you explain in detail?

Best regard

Assoc Prof. Dr. Sefa Celik
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