[Chimera-users] Extracting asymmetric unit

Tom Goddard goddard at sonic.net
Tue Jul 31 09:03:17 PDT 2018


Hi Martin,

  Fit an atomic model of the asymmetric unit then use volume zone (Volume Viewer menu entry Feature / Zone) then save the map (Volume Viewer / File / Same Map As…).  See the maskZone option description in the volume save command for details

	https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/volume.html#output <https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/volume.html#output>

  Tom

> On Jul 31, 2018, at 7:00 AM, Martin Moncrieffe <mcm35 at cam.ac.uk> wrote:
> 
> Hi Tom,
> 
> A quick question. I have a helical reconstruction (EM) and would like to extract  the density for the asymmetric unit from the map. How does one do this?
> 
> Best.
> 
> __martin
> 
> 

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