[Chimera-users] Clustering algorithm

[David Sáez]

Dear Elaine,

Thanks for your helpful answer.
Great software, very useful.

Regards.

David.

On Tue, Jul 10, 2018 at 5:12 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi David,
> The clustering description in the MD Movie (trajectory viewer) page says
> to see Ensemble Cluster for details:
> <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/movie/
> movie.html#clustering>
>
> Here is the Ensemble Cluster documentation, including literature reference
> for the method:
> <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/
> ensemblecluster/ensemblecluster.html>
>
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> > On Jul 10, 2018, at 1:29 PM, David Adrian Saez San Martin <
> davidsaez at udec.cl> wrote:
> >
> > Hello, I want to use Chimera to generate clusters of a molecular
> dynamics trajectory. I have been looking for info about the clustering
> algorithm it uses, but I was not able to find anything. I guess it employs
> a default technique, does anybody know which one?
> > Regards.
> > David-.
>
>
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