[Chimera-users] Problem running Modellerfrom Chimera (versión 1.11.2(build 41380) 2016-12-05 19:45 UTC. Platform Linux64)

[Sergio Garay]

Hi all

I've tried to run Modeller locally from Chimera (versión 1.11.2(build
41380) 2016-12-05 19:45 UTC. Platform Linux64. Windowing system: x11), but
when it finishes, the model is not loaded inside Chimera. The log window
give me the following output:

*Model 0 (model1.pdb) appears to be a protein without secondary structure
assignments.*
*Automatically computing assignments using 'ksdssp' and parameter values:*
*  energy cutoff -0.5*
*  minimum helix length 3*
*  minimum strand length 3*
*Use command 'help ksdssp' for more information.*
*seq (len 437): added*
*target (len 437): model1.pdb (#0) chain A*
*seq (len 437): model1.pdb (#0) chain A*
*target (len 437): added*
*Target seq: added*
*Template structures: *
* model1.pdb (#0)*
*Run locally, the Modeller binary location: /usr/bin/mod9.19*
*Now, modeller is running locally...*
*Wrote /tmp/tmp73g3JY/template_struc/model1.pdb_0_0.pdb*
*MODELLER process output*
*-----------------------*
*-----------------------*
*MODELLER process errors*
*-----------------------*
*Could not find platform independent libraries <prefix>*
*Could not find platform dependent libraries <exec_prefix>*
*Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]*
*'import site' failed; use -v for traceback*

The problem seems to be that Chimera can not load the models obtained
​. I
 can find
​the model​
inside the directory: /tmp/tmp73g3JY/template_struc/*model1.pdb_0_0.pdb*

Thank you in advance.

Sergio

-- 








*Sergio GarayDr. en Ciencias BiológicasFacultad de Bioquimica y Cs.
BiológicasUniversidad Nacional del LitoralSanta Fe - ArgentinaC.C. 242 -
Ciudad Universitaria - C.P. S3000ZAAArgentinaPh. +54 (342) 4575-213Fax. +54
(342) 4575-221 *
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