[Chimera-users] ConSurf script on ChimeraX

[Fabian Glaser]

Hi, 

I would like to use Chimera ConSurf scripts in ChimeraX, but I get the following error when I try to run the script on ChimeraX

ModuleNotFoundError: No module named 'cPickle'

File "consurf_final_zn.py", line 1, in 

See log for complete Python traceback.

If you wish to report this error, send mail to chimerax-bugs at cgl.ucsf.edu <mailto:chimerax-bugs at cgl.ucsf.edu> and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created.

Is this something that can be fixed or updated?

More generally I would like to update ConSurf with a version of the script for ChimeraX, can you help me with that?

Here is the beginning of the original chimera script

import cPickle, base64
try:
	from SimpleSession.versions.v65 import beginRestore,\
	    registerAfterModelsCB, reportRestoreError, checkVersion
except ImportError:
	from chimera import UserError
	raise UserError('Cannot open session that was saved in a'
	    ' newer version of Chimera; update your version')
checkVersion([1, 12, 41623])
import chimera
from chimera import replyobj
replyobj.status('Restoring session...', \
    blankAfter=0)
replyobj.status('Beginning session restore...', \
    blankAfter=0, secondary=True)
beginRestore()

def restoreCoreModels():
	from SimpleSession.versions.v65 import init, restoreViewer, \
	     restoreMolecules, restoreColors, restoreSurfaces, \
	     restoreVRML, restorePseudoBondGroups, restoreModelAssociations
	molInfo = 

Thanks a lot,

Best,

Fabian

Fabian Glaser PhD

Head of the Structural  Bioinformatics section 
Bioinformatics Knowledge Unit - BKU
The Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering
Technion - Israel Institute of Technology, Haifa, Israel
Web http://bku.technion.ac.il/ <http://bku.technion.ac.il/>
Tel +972 (0) 4 8293701
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