<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><span style="font-family: ArialMT; font-size: 14px;" class="">Hi, </span><div class="" style="font-family: ArialMT; font-size: 14px;"><br class=""></div><div class="" style="font-family: ArialMT; font-size: 14px;">I would like to use Chimera ConSurf scripts in ChimeraX, but I get the following error when I try to run the script on ChimeraX</div><div class="" style="font-family: ArialMT; font-size: 14px;"><br class=""></div><div class=""><div class="" style="font-family: ArialMT; font-size: 14px; margin: 0px;">ModuleNotFoundError: No module named 'cPickle'<br class=""><br class="">File "consurf_final_zn.py", line 1, in <br class=""><br class=""><span class="" style="font-style: italic;">See log for complete Python traceback.</span><br class=""><br class="">If you wish to report this error, send mail to <a href="mailto:chimerax-bugs@cgl.ucsf.edu" class="">chimerax-bugs@cgl.ucsf.edu</a> and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created.</div><div class="" style="font-family: ArialMT; font-size: 14px; margin: 0px;"><br class=""></div><div class="" style="font-family: ArialMT; font-size: 14px; margin: 0px;">Is this something that can be fixed or updated?</div><div class="" style="font-family: ArialMT; font-size: 14px; margin: 0px;"><br class=""></div><div class="" style="font-family: ArialMT; font-size: 14px; margin: 0px;">More generally I would like to update ConSurf with a version of the script for ChimeraX, can you help me with that?</div><div class="" style="font-family: ArialMT; font-size: 14px; margin: 0px;"><br class=""></div><div class="" style="font-family: ArialMT; font-size: 14px; margin: 0px;">Here is the beginning of the original chimera script</div><div class="" style="font-family: ArialMT; font-size: 14px; margin: 0px;"><br class=""></div><div class="" style="margin: 0px;"><font face="ArialMT" class=""><span style="font-size: 14px;" class="">import cPickle, base64<br class="">try:<br class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>from SimpleSession.versions.v65 import beginRestore,\<br class=""><span class="Apple-tab-span" style="white-space: pre;"> </span> registerAfterModelsCB, reportRestoreError, checkVersion<br class="">except ImportError:<br class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>from chimera import UserError<br class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>raise UserError('Cannot open session that was saved in a'<br class=""><span class="Apple-tab-span" style="white-space: pre;"> </span> ' newer version of Chimera; update your version')<br class="">checkVersion([1, 12, 41623])<br class="">import chimera<br class="">from chimera import replyobj<br class="">replyobj.status('Restoring session...', \<br class=""> blankAfter=0)<br class="">replyobj.status('Beginning session restore...', \<br class=""> blankAfter=0, secondary=True)<br class="">beginRestore()<br class=""><br class="">def restoreCoreModels():<br class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>from SimpleSession.versions.v65 import init, restoreViewer, \<br class=""><span class="Apple-tab-span" style="white-space: pre;"> </span> restoreMolecules, restoreColors, restoreSurfaces, \<br class=""><span class="Apple-tab-span" style="white-space: pre;"> </span> restoreVRML, restorePseudoBondGroups, restoreModelAssociations<br class=""><span class="Apple-tab-span" style="white-space: pre;"> </span>molInfo = </span></font></div><div class="" style="font-family: ArialMT; font-size: 14px; margin: 0px;"><br class=""></div><div class="" style="font-family: ArialMT; font-size: 14px; margin: 0px;">Thanks a lot,</div><div class="" style="font-family: ArialMT; font-size: 14px;"><div class="" style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;"><br class="">Best,<br class=""><br class="">Fabian<br class=""><br class="">Fabian Glaser PhD<br class=""><br class="">Head of the Structural Bioinformatics section <br class="">Bioinformatics Knowledge Unit - BKU<br class="">The Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering<br class="">Technion - Israel Institute of Technology, Haifa, Israel<br class="">Web <a href="http://bku.technion.ac.il/" class="">http://bku.technion.ac.il/</a><br class="">Tel +972 (0) 4 8293701</div></div></div></body></html>