[Chimera-users] Regarding generating a .pdb file of peptide (Diglycine)

[Dilip H N]

Hello,
I have installed chimera in ubuntu 14.04..
I am finding difficult to get the .pdb format for diglyicne peptide (and
further to create the topology and run the simulation in gromacs)...
1] If in Build Structure i select PubChem CID and type 11163 (Diglycine
PubChem CID) i am getting error as:-
Error fetching 11163:[Errno socket error] [SSL: CERTIFICATE_VERIFY_FAILED]
certificate verify failed (_ssi.c:590)
2] I even tried through File - Fetch by ID - Pubchem and typed 1163
(Diglycine PubChem CID).. but in vain..i am getting the same error..

So can anybody kindly help....i am a novice here..
Any suggestions are highly appreciated..

Thank you...



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On Sun, Aug 20, 2017 at 11:15 PM, Dilip H N <cy16f01.dilip at nitk.edu.in>
wrote:

> Hello,
> I have install chimers in ubuntu 14.04..
> I am finding difficult to get the .pdb format for diglyicne peptide...
> 1] If in Build Structure i select PubChem CID and type 11163 (Diglycine
> PubChem CID) i am getting error as:-
> Error fetching 11163:[Errno socket error] [SSL: CERTIFICATE_VERIFY_FAILED]
> certificate verify failed (_ssi.c:590)
> 2] I even tried through File - Fetch by ID - Pubchem and typed 1163
> (Diglycine PubChem CID).. but in vain..i am getting the same error..
>
> So can anybody kindly help....i am a novice here..
>
> Thank you...
> --
> With Best Regards,
>
> DILIP.H.N
> Ph.D Student
>
>
>
> <https://mailtrack.io/> Sent with Mailtrack
> <https://mailtrack.io/install?source=signature&lang=en&referral=cy16f01.dilip@nitk.edu.in&idSignature=22>
>



-- 
With Best Regards,

DILIP.H.N
Ph.D Student
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