[Chimera-users] Proposal to add ability to load CATH domains in Chimera

[Tony Lewis]

Dear Eric,

Thank you very much for adding this new feature and for doing it so
quickly. I'm both impressed and grateful.

Kind regards,

Tony

Dr Tony Lewis
Orengo Group
UCL


On 29 September 2014 20:54, Eric Pettersen <pett at cgl.ucsf.edu> wrote:

> Oh, and thanks for the info BTW.  Very happy to add this capability to
> Chimera.
>
> --Eric
>
> On Sep 29, 2014, at 11:59 AM, Eric Pettersen <pett at cgl.ucsf.edu> wrote:
>
> On Sep 29, 2014, at 7:27 AM, Tony Lewis <t.lewis at ucl.ac.uk> wrote:
>
> Dear Chimera people,
>
> Many thanks to all Chimera contributors.
>
> Please may I propose an addition to allow users to access our CATH domains
> in the same way that they can currently access SCOP domains (
> https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/scop.html )?
>
> PDBs for CATH domains can be loaded from URI's of the form:
> http://data.cathdb.info/latest_release/pdb/1cukA01
>
> For information, CATH domain IDs contain 7 digits:
>
>    - 1-4 : (eg 1cuk ) : PDB code
>    -   5 : (eg A    ) : chain code
>    - 6-7 : (eg 01   ) : 2-digit domain number ( '00' for whole chain
>    domains )
>
> We here at CATH would be very happy to provide any other information
> required to implement this.
>
>
> Hi Tony,
> I've added CATH fetching to Chimera and it will show up in the tonight's
> daily build.  Look for builds dated September 27 or later.  The above
> information was sufficient.  Let me know if you find any rough edges. :-)
>
> --Eric
>
>                         Eric Pettersen
>                         UCSF Computer Graphics Lab
>                         http://www.cgl.ucsf.edu
>
>
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>
>
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