[Chimera-users] warning: Ignored bad PDB record found on line

Xiao-Bo Li x22li at uwaterloo.ca
Thu Jun 5 05:30:49 PDT 2014


Hello,

This morning I kept getting this error

"warning:  Ignored bad PDB record found on line nnn"

whenever I use the python script to try to open a pdb file.  The python 
script I'm using is the usual "chimera.openModels.open(pdbID, 
type='PDB')[0]".  This function call is how I've always been using 
Chimera, and this morning is the first time I'm getting this issue.

I dont see a problem with my internet connection, and I can open the PDB 
file using File->Fetch by ID, so it doesn't seem like the pdb file has 
any problems.  Only the python script gives me problems. Is anyone else 
experiencing this problem?

Best,

XBL



More information about the Chimera-users mailing list