[Chimera-users] moving to coordinates
Sebastian Mock
basti.mock at gmail.com
Thu Feb 7 01:13:31 PST 2013
Hi,
I am using Patchdock Algorithm to dock two Enzymes.
I get the pdb's and can load them into Chimera without having problems.
Because Patchdock only performs a jigsaw puzzle with the two molecules, I
have to look at all the solutions it gave me and judge them by some
criteria.
This is very time consuming, as I have to match every single solution with
the appropriate molecules in chimera and I get tons of solutions.
I found the following two lists with imo coordinates of the dockings. Is it
possible to load these into Chimera or at least to enter the coordinates,
so that chimera moves the
docking partner and I can just look at it and discard or accept?
These are the example lists
http://bioinfo3d.cs.tau.ac.il/PatchDock/runs/1_Hexokinase_combined.pdb_2_G6PIsomerase_combined.pdb_37_58_16_6_1_113/trans.txt
http://bioinfo3d.cs.tau.ac.il/PatchDock/runs/1_Hexokinase_combined.pdb_2_G6PIsomerase_combined.pdb_37_58_16_6_1_113/docking.res
Thanks in advance
Sebastian
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