[Chimera-users] Generating trajectory of a user-defined plane

[Lili Peng]

Hi,

I am interested in measuring the deviation of an helical segment with
respect to the initial structure in a GROMACS trajectory.  I have already
uploaded my *.tpr and *.trr files into MD Movie and have defined a plane
through the helical segment within the initial structure.  Is it possible
to define another plane through the same helix and track the intersection
angle throughout the trajectory?

Thank you,
Lili
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