[Chimera-users] coloring 3D maps according to local cross-correlation fit of docked PDB structures

[Tom Goddard]

Hi J-F,

  Do you mean if the correlation of a molecular model with a map is 0.9 
then color the whole map blue?  Or do you want to color just the region 
of the map near the molecule blue.  Or do you wan the map be colored in 
different colors, each representing the local correlation of the 
molecule to the map near the point where that color is shown?  If this 
last case, how would you define the "local correlation"?  Probably you 
would want to color the molecule in that case not the map since it would 
give a better view of the whole volume rather than just its envelope.

     Tom


-------- Original Message --------
Subject: [Chimera-users] coloring 3D maps according to local 
cross-correlation fit of docked PDB structures
From: Jean-Francois Menetret
To: chimera-users at cgl.ucsf.edu
Date: 10/18/12 6:24 AM
> Dear users,
> we would like to color aCryo-EM map according to the cross-correlation 
> fit of docked PDB structures.
> Is that possible in Chimera ?
> Best wishes
> J-F Menetret

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