<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
<div class="moz-cite-prefix">Hi J-F,<br>
<br>
Do you mean if the correlation of a molecular model with a map is
0.9 then color the whole map blue? Or do you want to color just
the region of the map near the molecule blue. Or do you wan the
map be colored in different colors, each representing the local
correlation of the molecule to the map near the point where that
color is shown? If this last case, how would you define the
"local correlation"? Probably you would want to color the
molecule in that case not the map since it would give a better
view of the whole volume rather than just its envelope.<br>
<br>
Tom<br>
<br>
<br>
-------- Original Message --------<br>
Subject: [Chimera-users] coloring 3D maps according to local
cross-correlation fit of docked PDB structures<br>
From: Jean-Francois Menetret<br>
To: <a class="moz-txt-link-abbreviated" href="mailto:chimera-users@cgl.ucsf.edu">chimera-users@cgl.ucsf.edu</a><br>
Date: 10/18/12 6:24 AM<br>
</div>
<blockquote
cite="mid:CAD2A4EPKjv6Wt=NVuGh75-u7mw3nz2kdWxAjGaJD3GeqJEOCcw@mail.gmail.com"
type="cite"><font>Dear users,<br>
<font>we would like to </font></font><font><font><font>color a<font>
Cryo-EM map according to the c<font>ross-corr<font>elation
fit of docked PDB structure<font>s.</font><br>
<font>Is that po<font>s<font>sible in Chimera ?<br>
<font>Best wishes<br>
<font>J-F M<font>enetret</font></font></font></font></font></font></font></font></font></font></font>
</font><br>
</blockquote>
<br>
</body>
</html>