[Chimera-users] Regarding Bonding Pattern and all residue

[Vivek Keshri]

Dear Dr. Elaine,


Thank you very much for prompt reply and consideration of my request. I
received the all tutorial / manual which you have through link.

Yours sincerely,

Vivek Keshri



On Tue, Jan 31, 2012 at 12:16 AM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Dear Vivek,
> In general, you could use the FindHBond and Find Clashes/Contacts tools
> (or their command equivalents).
>
> <
> http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbond.html
> >
> <
> http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findclash/findclash.html
> >
>
> For example, see this tutorial:
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/squalene.html>
>
> There are several additional tutorials that may be useful for learning how
> to use Chimera:
> <http://www.cgl.ucsf.edu/Outreach/Tutorials/GettingStarted.html>
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/frametut.html>
>
> Best,
> Elaine
> ----------
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> On Jan 30, 2012, at 2:01 AM, Vivek Keshri wrote:
>
> > Dear Sir / Madam,
> >
> > I Vivek Keshri writing from Uttar Pradesh India, I am opening docked PDB
> file in Chimera 1.5.3 and want to identify all residue of receptor and
> ligand which are involved in binding.
> >
> > Waiting for favorable response...
> >
> > Yours Sincerely,
> >
> > Vivek Keshri
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20120131/1bf73330/attachment.html>