[Chimera-users] how to find

[Bishwajit Das]

Thanks for this information but when i try to find the distance between
GLU101 and ARG 165, with this command distance : 101 at ca :165 at ca,
then its select GLY101 and SER 165 and showing the distance.How can i
select specific atom.please help me.

On Thu, Feb 9, 2012 at 10:30 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Bishwajit,
> There are usually several ways to do the same thing. If you use the Find
> Clashes/Contacts or FindHBond tools mentioned in previous messages, they
> can report the distances to a file or the Reply Log. Or, you can pick two
> atoms from the screen and then measure distance, as in this tutorial,
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/squalene.html>
>
> ...or use the "Distances" tool or the "distance" command
> <
> http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/structuremeas/structuremeas.html#distances
> >
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/distance.html>
>
> ... how to specify atoms in commands (example: distance :144 at ca :188 at ca)
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/frameatom_spec.html
> >
>
> You should try the tutorials and use the Help in Chimera before sending
> questions to this list.  You can search for topics of interest from the
> Chimera menu, "Help... Search Documentation" -- for example, search for
> "distance"
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
> On Feb 9, 2012, at 6:30 AM, Bishwajit Das wrote:
>
> > suppose i want so select ARG 188 and TRP 144 and also want to see the
> distance between them ....how i do this in chimera..please help me.
>
>


-- 
BISHWAJIT DAS
KOLKATA,West Bengal
INDIA*
*
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