[Chimera-users] Incomplete chain contain many dotted lines while displaying

[Junfeng Huang]

Hi Elaine,

Thank you very much! It work!
I have to study more about Chimera.

Thanks again!

Junfeng

Sun Yat-sen University
Guangzhou, China


On Wed, Apr 25, 2012 at 12:23 AM, Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Junfeng,
> Use command: ~longbond
>
> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/longbond.html>
>
> (the command line can be shown using the menu: Favorites... Command Line)
>
> I hope this helps,
> Elaine
> ----------
> Elaine C. Meng, Ph.D.
> UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
> On Apr 23, 2012, at 7:58 PM, Junfeng Huang wrote:
>
> > Hello Everyone，
> >
> > I have a problem while display PDB file.
> >
> > I extract the residues from protein-protein interface by ligplus into a
> new PDB file, and want to display and analysis it. As the file contain only
> the residues form interface, they are discontinuous.
> >
> > While display with pymol, it is OK. However, While using Chimera, there
> are many dotted lines between the residues. I know what the dotted lines
> are, but I do want to hide all these lines, can somebody please give me
> some hints?
> >
> > I sent two figures in the attachment. It's the first time I used
> mail-list, if it doesn't support figures, please check here:
> >
> > Interface display by pymol
> > http://bbs.sysu.edu.cn/attach/Pictures/1335235173.JPG
> >
> > Interface display by Chimera
> > http://bbs.sysu.edu.cn/attach/Pictures/1335235254.JPG
> >
> > Thank you very much!
> > <interface_pymol.png><interface_Chimera.png>
>
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