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[Eric Pettersen]

Hi Zhaoyang,
	So far I have been unable to reproduce your problem here.  Could you  
please use the "Report A Bug" item (in the Help menu) to submit a bug  
report for this?  Using Report A Bug will provide me more information,  
such as what version of Chimera you're using and what version of  
Windows, that will help me track this down.  Thanks!

--Eric

                         Eric Pettersen
                         UCSF Computer Graphics Lab
                         http://www.cgl.ucsf.edu

On Mar 29, 2011, at 1:20 AM, ding kevin wrote:

> Hi, I am a freshman to use Chimera. When I run "add charge" of  
> ligand by the tutorial, and the error below appears. I would like to  
> know the reasons and how could I solve this problem.
>
> Thank you very much!
>
>
>
> Charge model: AMBER ff99SB
> Assigning partial charges to residue ARA (net charge +0) with am1- 
> bcc method
> Running ANTECHAMBER command: D:/drivers/Chimera 1.5.3rc/bin/amber11/ 
> bin\antechamber -ek qm_theory='AM1', grms_tol=0.02, tight_p_conv=0,  
> scfconv=1.d-10, -i c:\users\dingzh~1\appdata\local\temp\tmpkghulj 
> \ante.in.mol2 -fi mol2 -o c:\users\dingzh~1\appdata\local\temp 
> \tmpkghulj\ante.out.mol2 -fo mol2 -c bcc -nc 0 -j 5 -s 2
> (ARA) cygwin warning:
>
> (ARA)   MS-DOS style path detected: c:\users\dingzh~1\appdata\local 
> \temp\tmpkghulj\ante.in.mol2
>
> (ARA)   Preferred POSIX equivalent is: /cygdrive/c/users/dingzh~1/ 
> appdata/local/temp/tmpkghulj/ante.in.mol2
>
> (ARA)   CYGWIN environment variable option "nodosfilewarning" turns  
> off this warning.
>
> (ARA)   Consult the user's guide for more details about POSIX paths:
>
> (ARA)     http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
>
> (ARA) /usr/bin/antechamber.exe: error while loading shared  
> libraries: ?: cannot open shared object file: No such file or  
> directory
>
> (ARA) Error: cannot run ""D:/drivers/Chimera 1.5.3rc/bin/amber11/bin/ 
> bondtype" -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o  
> ANTECHAMBER_BOND_TYPE.AC -f ac" in judgebondtype() of antechamber.c  
> properly, exit
>
> (ARA) Running: "D:/drivers/Chimera 1.5.3rc/bin/amber11/bin/bondtype"  
> -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac
>
> Failure running ANTECHAMBER for residue ARA
> Check reply log for details
>
>
> -- 
> Zhaoyang Ding
> East China University of science and technology
> Shanghai China
>
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> Chimera-users at cgl.ucsf.edu
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