<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Zhaoyang,<div><span class="Apple-tab-span" style="white-space:pre"> </span>So far I have been unable to reproduce your problem here. Could you please use the "Report A Bug" item (in the Help menu) to submit a bug report for this? Using Report A Bug will provide me more information, such as what version of Chimera you're using and what version of Windows, that will help me track this down. Thanks!</div><div><br></div><div>--Eric</div><div><br></div><div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 16px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> Eric Pettersen</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 16px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> UCSF Computer Graphics Lab</font></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font-size: 16px; "><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "> <a href="http://www.cgl.ucsf.edu">http://www.cgl.ucsf.edu</a></font></div><div><font face="Helvetica" size="5" style="font: normal normal normal 16px/normal Helvetica; "><br></font></div><div><div>On Mar 29, 2011, at 1:20 AM, ding kevin wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi, I am a freshman to use Chimera. When I run "add charge" of ligand by the tutorial, and the error below appears. I would like to know the reasons and how could I solve this problem.</div><div><br></div><div> Thank you very much!</div><div><br></div><div><br></div><div><br></div><div>Charge model: AMBER ff99SB</div><div>Assigning partial charges to residue ARA (net charge +0) with am1-bcc method</div><div>Running ANTECHAMBER command: D:/drivers/Chimera 1.5.3rc/bin/amber11/bin\antechamber -ek qm_theory='AM1', grms_tol=0.02, tight_p_conv=0, scfconv=1.d-10, -i c:\users\dingzh~1\appdata\local\temp\tmpkghulj\ante.in.mol2 -fi mol2 -o c:\users\dingzh~1\appdata\local\temp\tmpkghulj\ante.out.mol2 -fo mol2 -c bcc -nc 0 -j 5 -s 2</div> <div>(ARA) cygwin warning:</div><div><br></div><div>(ARA) MS-DOS style path detected: c:\users\dingzh~1\appdata\local\temp\tmpkghulj\ante.in.mol2</div><div><br></div><div>(ARA) Preferred POSIX equivalent is: /cygdrive/c/users/dingzh~1/appdata/local/temp/tmpkghulj/ante.in.mol2</div> <div><br></div><div>(ARA) CYGWIN environment variable option "nodosfilewarning" turns off this warning.</div><div><br></div><div>(ARA) Consult the user's guide for more details about POSIX paths:</div><div> <br></div><div>(ARA) <a href="http://cygwin.com/cygwin-ug-net/using.html#using-pathnames">http://cygwin.com/cygwin-ug-net/using.html#using-pathnames</a></div><div><br></div><div>(ARA) /usr/bin/antechamber.exe: error while loading shared libraries: ?: cannot open shared object file: No such file or directory</div> <div><br></div><div>(ARA) Error: cannot run ""D:/drivers/Chimera 1.5.3rc/bin/amber11/bin/bondtype" -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o <a href="http://ANTECHAMBER_BOND_TYPE.AC">ANTECHAMBER_BOND_TYPE.AC</a> -f ac" in judgebondtype() of antechamber.c properly, exit</div> <div><br></div><div>(ARA) Running: "D:/drivers/Chimera 1.5.3rc/bin/amber11/bin/bondtype" -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o <a href="http://ANTECHAMBER_BOND_TYPE.AC">ANTECHAMBER_BOND_TYPE.AC</a> -f ac</div> <div><br></div><div>Failure running ANTECHAMBER for residue ARA</div><div>Check reply log for details</div><div><br></div><br>-- <br>Zhaoyang Ding<div>East China University of science and technology</div><div>Shanghai China</div> <div><br> </div> _______________________________________________<br>Chimera-users mailing list<br><a href="mailto:Chimera-users@cgl.ucsf.edu">Chimera-users@cgl.ucsf.edu</a><br>http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users<br></blockquote></div><br></div><br><br><div apple-content-edited="true"> </div><br></body></html>