[Chimera-users] defining attribute

[Bala subramanian]

Thank you Elaine and Eric,

I am downloading the latest version. I have two rna duplexes. For each of
them, i have calculated sasa values and i want to use this as my attribute
ie sasa1.txt for duplex 1 and sasa2.txt for duplex2. Can i tell this
catogorically to chimera. Im scared that chimera should nt interchange or
apply same .txt to both molecules.

Bala

On Fri, Sep 17, 2010 at 7:01 PM, Eric Pettersen <pett at cgl.ucsf.edu> wrote:

> Hi Bala,
> This problem was fixed about 5 weeks ago, so if you get a current daily
> build it will work (though you will also have to make the changes that
> Elaine suggests in her email).
>
> --Eric
>
>                         Eric Pettersen
>                         UCSF Computer Graphics Lab
>                         http://www.cgl.ucsf.edu
>
> On Sep 17, 2010, at 8:19 AM, Bala subramanian wrote:
>
> Friends,
>
> I want to define solvent accessibility as the attribute to create a worm
> representation. I used the template file 'percentExposed.txt' in the
> following link to create an attribute file. The sample file i creased is
> attached (exp.txt)
>
>
> http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/defineattrib/percentExposed.txt
>
> when i give the command: deffattr exp.txt
> I get the following error. How to resolve the problem.
>
> Traceback (most recent call last):
>   File
> "/usr/local/chimera_15/lib/python2.6/site-packages/Pmw/Pmw_1_3/lib/PmwBase.py",
> line 1747, in __call__
>     return apply(self.func, args)
>   File "/usr/local/chimera_15/share/Midas/midas_ui.py", line 260, in
> processCommand
>     midas_text.makeCommand(text)
>   File "/usr/local/chimera_15/share/Midas/midas_text.py", line 66, in
> makeCommand
>     f(c, args)
>   File "/usr/local/chimera_15/share/AddAttr/ChimeraExtension.py", line 33,
> in cmdAddAttr
>     specInfo=[("spec", "models", "molecules")])
>   File "/usr/local/chimera_15/share/Midas/midas_text.py", line 424, in
> doExtensionFunc
>     extFunc(*tuple(processedArgs), **kw)
>   File "/usr/local/chimera_15/share/AddAttr/__init__.py", line 77, in
> addAttributes
>     return _addAttr(attrFile, models, log, raiseTool)
>   File "/usr/local/chimera_15/share/AddAttr/__init__.py", line 239, in
> _addAttr
>     from ShowAttr import ShowAttrDialog, screenedAttrs
> ImportError: cannot import name screenedAttrs
> ImportError: cannot import name screenedAttrs
>
>   File "/usr/local/chimera_15/share/AddAttr/__init__.py", line 239, in
> _addAttr
>     from ShowAttr import ShowAttrDialog, screenedAttrs
>
>
> <exp.txt>_______________________________________________
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>
>
>
>
>
>
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