Thank you Elaine and Eric,<br><br>I am downloading the latest version. I have two rna duplexes. For each of them, i have calculated sasa values and i want to use this as my attribute ie sasa1.txt for duplex 1 and sasa2.txt for duplex2. Can i tell this catogorically to chimera. Im scared that chimera should nt interchange or apply same .txt to both molecules.<br>
<br>Bala<br><br><div class="gmail_quote">On Fri, Sep 17, 2010 at 7:01 PM, Eric Pettersen <span dir="ltr"><<a href="mailto:pett@cgl.ucsf.edu">pett@cgl.ucsf.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div style="">Hi Bala,<div><span style="white-space: pre-wrap;"> </span>This problem was fixed about 5 weeks ago, so if you get a current daily build it will work (though you will also have to make the changes that Elaine suggests in her email).</div>
<div><br></div><div>--Eric</div><div><br><div><div style="margin: 0px; font-size: 16px;"><font face="Helvetica" size="5"> Eric Pettersen</font></div><div style="margin: 0px; font-size: 16px;"><font face="Helvetica" size="5"> UCSF Computer Graphics Lab</font></div>
<div class="im"><div style="margin: 0px; font-size: 16px;"><font face="Helvetica" size="5"> <a href="http://www.cgl.ucsf.edu" target="_blank">http://www.cgl.ucsf.edu</a></font></div><div style="margin: 0px; font-size: 16px;">
<font face="Helvetica" size="5"><br></font></div></div><div><div></div><div class="h5"><div>On Sep 17, 2010, at 8:19 AM, Bala subramanian wrote:</div><br></div></div><blockquote type="cite"><div><div></div><div class="h5">
Friends,<br><br>I want to define solvent accessibility as the attribute to create a worm representation. I used the template file 'percentExposed.txt' in the following link to create an attribute file. The sample file i creased is attached (exp.txt)<br>
<br><a href="http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/defineattrib/percentExposed.txt" target="_blank">http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/defineattrib/percentExposed.txt</a><br><br>when i give the command: deffattr exp.txt <br>
I get the following error. How to resolve the problem.<br><br>Traceback (most recent call last):<br> File "/usr/local/chimera_15/lib/python2.6/site-packages/Pmw/Pmw_1_3/lib/PmwBase.py", line 1747, in __call__<br>
return apply(self.func, args)<br> File "/usr/local/chimera_15/share/Midas/midas_ui.py", line 260, in processCommand<br> midas_text.makeCommand(text)<br> File "/usr/local/chimera_15/share/Midas/midas_text.py", line 66, in makeCommand<br>
f(c, args)<br> File "/usr/local/chimera_15/share/AddAttr/ChimeraExtension.py", line 33, in cmdAddAttr<br> specInfo=[("spec", "models", "molecules")])<br> File "/usr/local/chimera_15/share/Midas/midas_text.py", line 424, in doExtensionFunc<br>
extFunc(*tuple(processedArgs), **kw)<br> File "/usr/local/chimera_15/share/AddAttr/__init__.py", line 77, in addAttributes<br> return _addAttr(attrFile, models, log, raiseTool)<br> File "/usr/local/chimera_15/share/AddAttr/__init__.py", line 239, in _addAttr<br>
from ShowAttr import ShowAttrDialog, screenedAttrs<br>ImportError: cannot import name screenedAttrs<br>ImportError: cannot import name screenedAttrs<br><br> File "/usr/local/chimera_15/share/AddAttr/__init__.py", line 239, in _addAttr<br>
from ShowAttr import ShowAttrDialog, screenedAttrs<br><br><br> </div></div><span><exp.txt></span>_______________________________________________<br>Chimera-users mailing list<br><a href="mailto:Chimera-users@cgl.ucsf.edu" target="_blank">Chimera-users@cgl.ucsf.edu</a><br>
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