[Chimera-users] adding pseudo bonds

[Elaine Meng]

Hi JD,
The "user interface" (i.e. no programming) way is to create a text  
file listing the desired pseudobonds and their colors and read it in  
with PseudoBond Reader.  The tool and file format are described here:
<http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/pbreader/pbreader.html 
 >

I don't know the python way, but perhaps looking in the code for  
PseudoBond Reader will help ( share/PBReader/ within your Chimera  
installation).
Best,
Elaine
-----
Elaine C. Meng, Ph.D.                          meng at cgl.ucsf.edu
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco
                      http://www.cgl.ucsf.edu/home/meng/index.html



On May 12, 2009, at 8:19 AM, Jean Didier Pie Marechal wrote:

> Dear all,
>
> what is the way to add pseubond between metal and chelating atoms?
> if you could tell me what are the "mouse driven" and "script driven"  
> manner I'll be very pleased....
> all the best,
> JD