[Chimera-users] adding pseudo bonds

[Jean Didier Pie Marechal]

Dear all,

what is the way to add pseubond between metal and chelating atoms?
if you could tell me what are the "mouse driven" and "script driven" manner I'll be very pleased....
all the best,
JD


Dr. Jean-Didier Maréchal
Lecturer
Computational Biotechnological Chemistry @ Transmet
Unitat de Química Física
Departament de Química
Universitat Autònoma de Barcelona
Edifici C.n.
08193 Cerdanyola (Barcelona)
Tel: +34.935814936
e-mail: JeanDidier.Marechal at uab.es

----- Missatge original -----
De: chimera-users-request at cgl.ucsf.edu
Data: Diumenge, Maig 10, 2009 9:00 pm
Assumpte: Chimera-users Digest, Vol 73, Issue 11

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>   1. Protonate heteroatoms only (Francesco Pietra)
>   2. Re: Protonate heteroatoms only (Eric Pettersen)
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> Message: 1
> Date: Sat, 9 May 2009 23:35:37 +0200
> From: Francesco Pietra <chiendarret at gmail.com>
> Subject: [Chimera-users] Protonate heteroatoms only
> To: chimera <chimera-users at cgl.ucsf.edu>
> Message-ID:
> 	<b87c422a0905091435q4a1671e2td61284cf092e7fb6 at mail.gmail.com>
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> Hi:
> Is there a command in Chimera to protonate (Sybyl-type) the
> heteroatoms only (or deprotonate the other elements from a fully
> protonated protein)?
> thanks
> francesco pietra
> 
> 
> ------------------------------
> 
> Message: 2
> Date: Sat, 9 May 2009 15:27:55 -0700
> From: Eric Pettersen <pett at cgl.ucsf.edu>
> Subject: Re: [Chimera-users] Protonate heteroatoms only
> To: Francesco Pietra <chiendarret at gmail.com>
> Cc: chimera <chimera-users at cgl.ucsf.edu>
> Message-ID: <67264749-1F9E-4B02-9B42-FF0A1DD99C30 at cgl.ucsf.edu>
> Content-Type: text/plain; charset=US-ASCII; format=flowed
> 
> del HC
> 
> will delete all hydrogens bonded to carbons (their IDATM types are 
> HC).
> --Eric
> 
> 	Eric Pettersen
> 	USCF Computer Graphics Lab
> 
> On May 9, 2009, at 2:35 PM, Francesco Pietra wrote:
> 
> > Hi:
> > Is there a command in Chimera to protonate (Sybyl-type) the
> > heteroatoms only (or deprotonate the other elements from a fully
> > protonated protein)?
> > thanks
> > francesco pietra
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> End of Chimera-users Digest, Vol 73, Issue 11
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