[Chimera-users] error running large iterative script (return code 3)

[Sumitro Harjanto]

Hi,

I was trying to run the following script (below), which calculates RMSDs
between 39 pdb models. Total iteration will be 741 with about 3000 match
commands. After it has run for about 10 mins chimera will crash with an
error: Chimera failed abnormally; the exit code was 3. I've printed the
debug lines below the script:

Any suggestions..?

Cheers,
Sumitro
--------------------------------------------------------
open d:\result\pdb\1B0G.pdb
open d:\result\pdb\1DUZ.pdb
match #0:1-9.C at ca #1:1-9.C at ca
match #0:1-9.C at n,ca,c,o #1:1-9.C at n,ca,c,o
match #0:1-2.C,8-9.C at ca #1:1-2.C,8-9.C at ca
match #0:1-2.C,8-9.C at n,ca,c,o #1:1-2.C,8-9.C at n,ca,c,o
close #1

open d:\result\pdb\1EEY.pdb
match #0:1-9.C at ca #1:1-9.C at ca
match #0:1-9.C at n,ca,c,o #1:1-9.C at n,ca,c,o
match #0:1-2.C,8-9.C at ca #1:1-2.C,8-9.C at ca
match #0:1-2.C,8-9.C at n,ca,c,o #1:1-2.C,8-9.C at n,ca,c,o
close #1

open d:\result\pdb\1EEZ.pdb
match #0:1-9.C at ca #1:1-9.C at ca
match #0:1-9.C at n,ca,c,o #1:1-9.C at n,ca,c,o
match #0:1-2.C,8-9.C at ca #1:1-2.C,8-9.C at ca
match #0:1-2.C,8-9.C at n,ca,c,o #1:1-2.C,8-9.C at n,ca,c,o
close #1

open d:\result\pdb\1HHG.pdb
match #0:1-9.C at ca #1:1-9.C at ca
match #0:1-9.C at n,ca,c,o #1:1-9.C at n,ca,c,o
match #0:1-2.C,8-9.C at ca #1:1-2.C,8-9.C at ca
match #0:1-2.C,8-9.C at n,ca,c,o #1:1-2.C,8-9.C at n,ca,c,o
close #1

open d:\result\pdb\1HHI.pdb
match #0:1-9.C at ca #1:1-9.C at ca
match #0:1-9.C at n,ca,c,o #1:1-9.C at n,ca,c,o
match #0:1-2.C,8-9.C at ca #1:1-2.C,8-9.C at ca
match #0:1-2.C,8-9.C at n,ca,c,o #1:1-2.C,8-9.C at n,ca,c,o
close #1

...
...
...

--------------------------------------------------------
initializing general preferences
loading Tix
initializing graphics
create application
loading Pmw
creating main window
creating menus
creating toolbar
creating viewer
initializing OpenGL
initializing preferences
initializing dialogs
initializing COM
initializing extensions
CloneMenu failed inside of MenuAddOrInsert.

This application has requested the Runtime to terminate it in an unusual
way.
Please contact the application's support team for more information.
Return code: 3
Press return or enter to to exit

--------------------------------------------------------

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