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<TITLE>error running large iterative script (return code 3)</TITLE>
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<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Book Antiqua">Hi,</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Book Antiqua">I was trying to run</FONT></SPAN><SPAN LANG="en-us"><FONT SIZE=2 FACE="Book Antiqua"> the following script</FONT></SPAN><SPAN LANG="en-us"><FONT SIZE=2 FACE="Book Antiqua"> (below)</FONT></SPAN><SPAN LANG="en-us"><FONT SIZE=2 FACE="Book Antiqua">,</FONT><FONT SIZE=2 FACE="Book Antiqua"></FONT></SPAN><SPAN LANG="en-us"> <FONT SIZE=2 FACE="Book Antiqua">which calculate</FONT></SPAN><SPAN LANG="en-us"><FONT SIZE=2 FACE="Book Antiqua">s</FONT></SPAN><SPAN LANG="en-us"><FONT SIZE=2 FACE="Book Antiqua"> RMSD</FONT></SPAN><SPAN LANG="en-us"><FONT SIZE=2 FACE="Book Antiqua">s</FONT></SPAN><SPAN LANG="en-us"><FONT SIZE=2 FACE="Book Antiqua"> between 39 pdb models.</FONT> <FONT SIZE=2 FACE="Book Antiqua">T</FONT><FONT SIZE=2 FACE="Book Antiqua">otal</FONT> <FONT SIZE=2 FACE="Book Antiqua">iteration will be 741 with about 3000 match commands.</FONT></SPAN><SPAN LANG="en-us"><FONT SIZE=2 FACE="Book Antiqua"></FONT> <FONT SIZE=2 FACE="Book Antiqua">A</FONT><FONT SIZE=2 FACE="Book Antiqua">fter</FONT> <FONT SIZE=2 FACE="Book Antiqua">it has run for about 10 mins chimera will crash with an error:</FONT></SPAN><SPAN LANG="en-us"><B> <FONT COLOR="#000000" SIZE=2 FACE="Arial">Chimera</FONT></B></SPAN><SPAN LANG="en-us"><U><FONT COLOR="#0000FF" SIZE=2 FACE="Arial"> </FONT></U></SPAN><SPAN LANG="en-us"><FONT COLOR="#000000" SIZE=2 FACE="Arial">failed abnormally; the exit code was 3</FONT></SPAN><SPAN LANG="en-us"><FONT COLOR="#000000" SIZE=2 FACE="Arial">.</FONT> <FONT COLOR="#000000" SIZE=2 FACE="Arial">I</FONT><FONT COLOR="#000000" SIZE=2 FACE="Arial">'ve printed the debug lines below the script:</FONT></SPAN><SPAN LANG="en-us"></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT COLOR="#000000" SIZE=2 FACE="Arial">Any suggestions..?</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT COLOR="#000000" SIZE=2 FACE="Arial">Cheers,</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT COLOR="#000000" SIZE=2 FACE="Arial">Sumitro</FONT></SPAN><SPAN LANG="en-us"></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">--------------------------------------------------------</FONT></SPAN><SPAN LANG="en-us"></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">open d:\result\pdb\1B0G.pdb</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">open d:\result\pdb\1DUZ.pdb</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-9.C@ca #1:1-9.C@ca</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-9.C@n,ca,c,o #1:1-9.C@n,ca,c,o</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-2.C,8-9.C@ca #1:1-2.C,8-9.C@ca</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-2.C,8-9.C@n,ca,c,o #1</FONT><FONT SIZE=2 FACE="Courier New">:1-2.C,8-9.C@n,ca,c,o</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">close #1</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">open d:\result\pdb\1EEY.pdb</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-9.C@ca #1:1-9.C@ca</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-9.C@n,ca,c,o #1:1-9.C@n,ca,c,o</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-2.C,8-9.C@ca #1:1-2.C,8-9.C@ca</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-2.C,8-9.C@n,ca,c,o #1:1-2.C,8-9.C@n,ca,c,o</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">close #1</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">open d:\result\pdb\</FONT><FONT SIZE=2 FACE="Courier New">1EEZ.pdb</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-9.C@ca #1:1-9.C@ca</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-9.C@n,ca,c,o #1:1-9.C@n,ca,c,o</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-2.C,8-9.C@ca #1:1-2.C,8-9.C@ca</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-2.C,8-9.C@n,ca,c,o #1:1-2.C,8-9.C@n,ca,c,o</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">close #1</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">open d:\result\pdb\1HHG.pdb</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-9.C@ca #1:1-9.C@ca</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-9.C@n,ca,c,o #1:1-9.C@n,ca,c,o</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-2.C,8-9.C@ca #1:1-2.C,8-9.C@ca</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-2.C,8-9.C@n,ca,c,o #1:1-2.C,8-9.C@n,ca,c,o</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">close #1</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">open d:\result\pdb\1HHI.pdb</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-9.C@ca #1:1-9.C@ca</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-9.C@n,ca,c,o #1:1-9.C@n,ca,c,o</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0</FONT><FONT SIZE=2 FACE="Courier New">:1-2.C,8-9.C@ca #1:1-2.C,8-9.C@ca</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">match #0:1-2.C,8-9.C@n,ca,c,o #1:1-2.C,8-9.C@n,ca,c,o</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">close #1</FONT></SPAN><SPAN LANG="en-us"></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">…</FONT></SPAN><SPAN LANG="en-us"></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">…</FONT></SPAN><SPAN LANG="en-us"></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">…</FONT></SPAN><SPAN LANG="en-us"></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">--------------------------------------------------------</FONT></SPAN><SPAN LANG="en-us"></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">initializing general preferences</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">loading Tix</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">initializing graphics</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">create application</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">loading Pmw</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">creating main window</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">creating menus</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">creating toolbar</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">creatin</FONT><FONT SIZE=2 FACE="Courier New">g viewer</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">initializing OpenGL</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">initializing preferences</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">initializing dialogs</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">initializing COM</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">initializing extensions</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">CloneMenu failed inside of MenuAddOrInsert.</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">This application has requested the Runtime to terminate it in an unusual way.</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">Please contact th</FONT><FONT SIZE=2 FACE="Courier New">e application's support team for more information.</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">Return code: 3</FONT></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">Press return or enter to to exit</FONT></SPAN><SPAN LANG="en-us"></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"><FONT SIZE=2 FACE="Courier New">-------------------------------------------------------</FONT><FONT SIZE=2 FACE="Courier New">-</FONT></SPAN><SPAN LANG="en-us"></SPAN></P>
<P DIR=LTR><SPAN LANG="en-us"></SPAN></P>
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