[Chimera-users] ‏ crystal contacts

Meital Bachar meitalbachar at tauex.tau.ac.il
Thu May 12 01:43:36 PDT 2022

Thank you so much
that helped me a lot!
and thank you for your quick response
מאת: Elaine Meng <meng at cgl.ucsf.edu>
‏‏נשלח: יום שני 09 מאי 2022 20:55
‏‏אל: Meital Bachar <meitalbachar at tauex.tau.ac.il>
עותק: chimera-users at cgl.ucsf.edu <chimera-users at cgl.ucsf.edu>
‏‏נושא: Re: [Chimera-users] crystal contacts

Hi Meital,
If you use the command "crystalcontacts" there is an option to list the residues in the Reply Log, for example, if your structure is open as model #0 and you want to use distance 2.5 Angstroms:

crystalcontacts #0 2.5 residueInfo true

See command help and list of options:

If you are considering switching to ChimeraX, note that ChimeraX also has a Crystal Contacts tool and a "crystalcontacts" command with the residueInfo option.

I hope this helps,
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On May 9, 2022, at 9:55 AM, Meital Bachar via Chimera-users <chimera-users at cgl.ucsf.edu> wrote:
> Hello,
> my name is Meital and I am a Ph.D. student at the school of chemistry at Tel-Aviv university.
> i am trying to identify the crystal contacts of a protein that I am studying.
> and I was wondering if it is possible to get an output for the calculated crystal contacts in a way that the actual residues are listed.
> appreciate a lot your response.
> Meital

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