[Chimera-users] Save reply log through chimera command line

Reeki Emrizal reeki at mfrlab.org
Tue May 10 16:34:53 PDT 2022


Hi

I working on an automated python script to calculate the rmsd between two
molecules using rmsd command. I'm using --nogui when running the script.
The standard output did not show the rmsd value.

When using the chimera gui, I noticed that the rmsd value is shown in the
reply log. Is there a way I could save the content of the reply log through
python script?

I found previous post with similar issue that use:

from chimera.tkgui import saveReplyLog
saveReplyLog(path)

 The solution does not work for me though as the text file is empty even
though there is content in the reply log.

Kind Regards
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