[Chimera-users] Blast not working

[Antonio Díaz Quintana]

Thank you, Elaine.

I fixed it already by using the 1.16 version instead of 1.15rc, upon 
advice from other colleagues.

Best,

Antonio

El 01/06/2022 a las 17:52, Elaine Meng escribió:
> At least in my own test case just now, I can confirm that running Blast from the Sequence tool works in both the 1.16 release and today's 1.17 daily build.
> Best,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
>> On May 31, 2022, at 10:07 PM, Tom Goddard via Chimera-users <chimera-users at cgl.ucsf.edu> wrote:
>>
>> Hi Antonio,
>>
>> The error "ImportError: No module named replyobj" means Chimera cannot find its message logging module called "replyobj".  That suggests that your Chimera installation is broken, and does not appear to be a problem specifically with BLAST.  I would suggest installing the current Chimera version 1.16.
>>
>> If that does not fix it, use the Report a Bug... button that should appear when this error message is shown.  Or if that button does not appear use Chimera menu entry Help / Report a Bug....
>>
>> 	Tom
>>
>>
>>> On May 31, 2022, at 8:05 AM, Antonio Díaz Quintana via Chimera-users <chimera-users at cgl.ucsf.edu> wrote:
>>>
>>> Dear all,
>>>
>>> Recently, I stopped being able to perform a BLAST search from the SEQUENCE tool in UCSF Chimera. Is there anything I could do to fix this?
>>>
>>> Log message follows:
>>>
>>> Web Service: BlastProtein2 is a Python wrapper that calls blastp to search nr or pdb for sequences similar to the given protein sequence
>>> Opal service URL: http://webservices.rbvi.ucsf.edu/opal2/services/BlastProtein2Service
>>> Opal job URL: http://webservices.rbvi.ucsf.edu/appBlastProtein2Service16540092552761301435050
>>> Traceback (most recent call last):
>>>    File "C:\Program Files\Chimera 1.15rc\share\chimera\tasks.py", line 179, in runStatusCB
>>>      task.statusCBList[0]()
>>>    File "C:\Program Files\Chimera 1.15rc\share\blastpdb\ParserBlastP.py", line 434, in _statusCB
>>>      self.finishCB(self.params, output)
>>>    File "C:\Program Files\Chimera 1.15rc\share\blastpdb\gui.py", line 424, in _finish
>>>      self.fetchColumnValues()
>>>    File "C:\Program Files\Chimera 1.15rc\share\blastpdb\gui.py", line 449, in fetchColumnValues
>>>      info = fetch_pdb_info(pdb_ids)
>>>    File "C:\Program Files\Chimera 1.15rc\share\blastpdb\pdbinfo.py", line 151, in fetch_pdb_info
>>>      import replyobj
>>> ImportError: No module named replyobj
>>>
>>> Best,
>>>
>>> Antonio
>>>
>>> -- 
>>> Dr. Antonio J. Díaz Quintana
>>> Instituto de Investigaciones Químicas
>>> Universidad de Sevilla - CSIC
>>> Avda. Americo Vespucio 49
>>> 41092 Sevilla
>>> Spain
>>>
>>> Phone: +34 954 48 9631
>>>
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>> _______________________________________________
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-- 
Dr. Antonio J. Díaz Quintana
Instituto de Investigaciones Químicas
Universidad de Sevilla - CSIC
Avda. Americo Vespucio 49
41092 Sevilla
Spain

Phone: +34 954 48 9631