[Chimera-users] Blast not working

[Tom Goddard]

Hi Antonio,

  Glad to hear the new Chimera 1.16 version is working.

	Tom


> On Jun 1, 2022, at 3:25 AM, Antonio Díaz Quintana <antonio.diaz at iiq.csic.es> wrote:
> 
> Hello Tom,
> 
> Thankyou. It worked.
> 
> Best,
> 
> Antonio
> 
> El 01/06/2022 a las 07:07, Tom Goddard escribió:
>> Hi Antonio,
>> 
>> The error "ImportError: No module named replyobj" means Chimera cannot find its message logging module called "replyobj".  That suggests that your Chimera installation is broken, and does not appear to be a problem specifically with BLAST.  I would suggest installing the current Chimera version 1.16.
>> 
>> If that does not fix it, use the Report a Bug... button that should appear when this error message is shown.  Or if that button does not appear use Chimera menu entry Help / Report a Bug....
>> 
>> 	Tom
>> 
>> 
>>> On May 31, 2022, at 8:05 AM, Antonio Díaz Quintana via Chimera-users <chimera-users at cgl.ucsf.edu <mailto:chimera-users at cgl.ucsf.edu>> wrote:
>>> 
>>> Dear all, 
>>> 
>>> Recently, I stopped being able to perform a BLAST search from the SEQUENCE tool in UCSF Chimera. Is there anything I could do to fix this?
>>> 
>>> Log message follows:
>>> 
>>> Web Service: BlastProtein2 is a Python wrapper that calls blastp to search nr or pdb for sequences similar to the given protein sequence
>>> Opal service URL: http://webservices.rbvi.ucsf.edu/opal2/services/BlastProtein2Service <http://webservices.rbvi.ucsf.edu/opal2/services/BlastProtein2Service>
>>> Opal job URL: http://webservices.rbvi.ucsf.edu/appBlastProtein2Service16540092552761301435050 <http://webservices.rbvi.ucsf.edu/appBlastProtein2Service16540092552761301435050>
>>> Traceback (most recent call last):
>>>   File "C:\Program Files\Chimera 1.15rc\share\chimera\tasks.py", line 179, in runStatusCB
>>>     task.statusCBList[0]()
>>>   File "C:\Program Files\Chimera 1.15rc\share\blastpdb\ParserBlastP.py", line 434, in _statusCB
>>>     self.finishCB(self.params, output)
>>>   File "C:\Program Files\Chimera 1.15rc\share\blastpdb\gui.py", line 424, in _finish
>>>     self.fetchColumnValues()
>>>   File "C:\Program Files\Chimera 1.15rc\share\blastpdb\gui.py", line 449, in fetchColumnValues
>>>     info = fetch_pdb_info(pdb_ids)
>>>   File "C:\Program Files\Chimera 1.15rc\share\blastpdb\pdbinfo.py", line 151, in fetch_pdb_info
>>>     import replyobj
>>> ImportError: No module named replyobj
>>> 
>>> Best,
>>> 
>>> Antonio
>>> 
>>> -- 
>>> Dr. Antonio J. Díaz Quintana
>>> Instituto de Investigaciones Químicas
>>> Universidad de Sevilla - CSIC
>>> Avda. Americo Vespucio 49
>>> 41092 Sevilla
>>> Spain
>>> 
>>> Phone: +34 954 48 9631
>>> _______________________________________________
>>> Chimera-users mailing list: Chimera-users at cgl.ucsf.edu <mailto:Chimera-users at cgl.ucsf.edu>
>>> Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users <https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users>
>> 
> -- 
> Dr. Antonio J. Díaz Quintana
> Instituto de Investigaciones Químicas
> Universidad de Sevilla - CSIC
> Avda. Americo Vespucio 49
> 41092 Sevilla
> Spain
> 
> Phone: +34 954 48 9631

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