[Chimera-users] the problem how to show distance

[Kenji MATSUI]

Dear Chimera X

Thank you very much for your kind answers.

I tried to find the distance between ligand(cluster14) and protein(TRP420)
by referring to the tutorial, but I could not do it, so I contacted you.

Detail
Objective: To display the distance between cluster14 and TRP420(The area
circled in yellow）.
[image: image.png]
I chose cluster 14 and TRP420 (shift+ctrl+click)→tool →structure Analysis
→distance

Refernece: Chimera tutorial
*To measure distances*:
・Select two atoms – press Shift + Control + Left click on the atoms in the
graphics window >>
・  Tools >> Structure Analysis >> Distances >> Create  - Distance reported
in graphics and new window

But, error is shown.  How to solve this problem?
[image: image.png]

[image: image.png]

What else I tried.

combine ligand and protein(OSBP)→But, I couldn't display.



---------------------------------------------------------------------------

Kenji Matsui
 Graduate School of Tokyo University of Agriculture and Technology
2-24-16, Nakamachi, Koganei-shi, Tokyo 184-8588, Japan
 Mail: s214903z at st.go.tuat.ac.jp
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20220128/c05baced/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image.png
Type: image/png
Size: 62515 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20220128/c05baced/attachment-0003.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image.png
Type: image/png
Size: 10122 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20220128/c05baced/attachment-0004.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image.png
Type: image/png
Size: 133252 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20220128/c05baced/attachment-0005.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: OSBP_OSW-1.pyc
Type: application/octet-stream
Size: 5442443 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20220128/c05baced/attachment-0001.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Chimera-tutorial.docx
Type: application/vnd.openxmlformats-officedocument.wordprocessingml.document
Size: 50805 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20220128/c05baced/attachment-0001.docx>