[Chimera-users] Molecular Dynamics

Edmund Marinelli edmundmarinelli at gmail.com
Thu Sep 17 19:11:03 PDT 2020


Very new to Chimera and to modeling in general.

1.) Does the Molecular Dynamics Tool allow simulation of a protein ligand

2.) Does a protein ligand docking pose generated by Autodock, for example,
qualify as a 'model' that can be read by the MD Tool and be employed in a
MD run?

Is there a comprehensive tutorial or manual discussing in detail the
setting of MD run within Chimera?

Any help would be appreciated. Thanks.

Edmund R Marinelli, PhD
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